Multiple sequence alignment - TraesCS2A01G130800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G130800 | chr2A | 100.000 | 5968 | 0 | 0 | 1 | 5968 | 78559529 | 78565496 | 0.000000e+00 | 11021.0 |
1 | TraesCS2A01G130800 | chr2B | 92.676 | 5161 | 228 | 77 | 693 | 5811 | 119634203 | 119629151 | 0.000000e+00 | 7299.0 |
2 | TraesCS2A01G130800 | chr2B | 87.440 | 1242 | 110 | 24 | 1122 | 2342 | 456699990 | 456698774 | 0.000000e+00 | 1387.0 |
3 | TraesCS2A01G130800 | chr2B | 87.279 | 1242 | 112 | 24 | 1122 | 2342 | 693044171 | 693042955 | 0.000000e+00 | 1376.0 |
4 | TraesCS2A01G130800 | chr2B | 87.925 | 1176 | 109 | 20 | 1189 | 2342 | 123135794 | 123136958 | 0.000000e+00 | 1354.0 |
5 | TraesCS2A01G130800 | chr2B | 86.591 | 440 | 34 | 14 | 7 | 446 | 119634917 | 119634503 | 4.210000e-126 | 462.0 |
6 | TraesCS2A01G130800 | chr2B | 84.559 | 136 | 3 | 10 | 311 | 446 | 120533454 | 120533337 | 1.050000e-22 | 119.0 |
7 | TraesCS2A01G130800 | chr2B | 95.918 | 49 | 2 | 0 | 405 | 453 | 120182630 | 120182582 | 4.960000e-11 | 80.5 |
8 | TraesCS2A01G130800 | chr2D | 91.671 | 4130 | 180 | 71 | 2 | 4056 | 77384399 | 77380359 | 0.000000e+00 | 5570.0 |
9 | TraesCS2A01G130800 | chr2D | 87.722 | 1686 | 126 | 39 | 4320 | 5968 | 77380203 | 77378562 | 0.000000e+00 | 1892.0 |
10 | TraesCS2A01G130800 | chr2D | 83.742 | 326 | 30 | 16 | 825 | 1132 | 78009152 | 78008832 | 2.720000e-73 | 287.0 |
11 | TraesCS2A01G130800 | chr2D | 82.353 | 255 | 16 | 14 | 106 | 360 | 77458188 | 77457963 | 1.700000e-45 | 195.0 |
12 | TraesCS2A01G130800 | chr2D | 88.889 | 117 | 9 | 2 | 936 | 1051 | 77449967 | 77449854 | 2.240000e-29 | 141.0 |
13 | TraesCS2A01G130800 | chr2D | 85.714 | 119 | 9 | 5 | 186 | 304 | 78010967 | 78010857 | 1.050000e-22 | 119.0 |
14 | TraesCS2A01G130800 | chr2D | 94.521 | 73 | 4 | 0 | 409 | 481 | 78010437 | 78010365 | 4.890000e-21 | 113.0 |
15 | TraesCS2A01G130800 | chr2D | 93.651 | 63 | 3 | 1 | 400 | 461 | 77457956 | 77457894 | 6.370000e-15 | 93.5 |
16 | TraesCS2A01G130800 | chr2D | 94.340 | 53 | 3 | 0 | 1082 | 1134 | 77449852 | 77449800 | 1.380000e-11 | 82.4 |
17 | TraesCS2A01G130800 | chr2D | 96.000 | 50 | 2 | 0 | 331 | 380 | 78010540 | 78010491 | 1.380000e-11 | 82.4 |
18 | TraesCS2A01G130800 | chr4D | 90.550 | 1164 | 96 | 12 | 1189 | 2342 | 456261485 | 456260326 | 0.000000e+00 | 1528.0 |
19 | TraesCS2A01G130800 | chr4D | 76.754 | 684 | 109 | 31 | 2597 | 3277 | 242939517 | 242940153 | 2.660000e-88 | 337.0 |
20 | TraesCS2A01G130800 | chr7B | 87.279 | 1242 | 112 | 24 | 1122 | 2342 | 25067212 | 25068428 | 0.000000e+00 | 1376.0 |
21 | TraesCS2A01G130800 | chr7B | 87.329 | 584 | 51 | 13 | 1770 | 2342 | 197406455 | 197405884 | 0.000000e+00 | 647.0 |
22 | TraesCS2A01G130800 | chr1B | 86.876 | 1242 | 116 | 26 | 1122 | 2342 | 345335044 | 345336259 | 0.000000e+00 | 1347.0 |
23 | TraesCS2A01G130800 | chr1D | 85.425 | 494 | 41 | 13 | 1124 | 1613 | 163479377 | 163479843 | 8.990000e-133 | 484.0 |
24 | TraesCS2A01G130800 | chr4A | 76.496 | 685 | 101 | 34 | 2600 | 3277 | 237096600 | 237095969 | 9.650000e-83 | 318.0 |
25 | TraesCS2A01G130800 | chr4B | 78.017 | 464 | 81 | 14 | 2597 | 3057 | 300802219 | 300802664 | 7.620000e-69 | 272.0 |
26 | TraesCS2A01G130800 | chr4B | 76.966 | 178 | 38 | 3 | 3383 | 3559 | 172775223 | 172775398 | 1.370000e-16 | 99.0 |
27 | TraesCS2A01G130800 | chr3A | 80.242 | 248 | 43 | 5 | 3651 | 3897 | 746084869 | 746084627 | 1.320000e-41 | 182.0 |
28 | TraesCS2A01G130800 | chr3D | 79.435 | 248 | 40 | 8 | 3651 | 3897 | 611160757 | 611160520 | 1.330000e-36 | 165.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G130800 | chr2A | 78559529 | 78565496 | 5967 | False | 11021.0 | 11021 | 100.0000 | 1 | 5968 | 1 | chr2A.!!$F1 | 5967 |
1 | TraesCS2A01G130800 | chr2B | 119629151 | 119634917 | 5766 | True | 3880.5 | 7299 | 89.6335 | 7 | 5811 | 2 | chr2B.!!$R5 | 5804 |
2 | TraesCS2A01G130800 | chr2B | 456698774 | 456699990 | 1216 | True | 1387.0 | 1387 | 87.4400 | 1122 | 2342 | 1 | chr2B.!!$R3 | 1220 |
3 | TraesCS2A01G130800 | chr2B | 693042955 | 693044171 | 1216 | True | 1376.0 | 1376 | 87.2790 | 1122 | 2342 | 1 | chr2B.!!$R4 | 1220 |
4 | TraesCS2A01G130800 | chr2B | 123135794 | 123136958 | 1164 | False | 1354.0 | 1354 | 87.9250 | 1189 | 2342 | 1 | chr2B.!!$F1 | 1153 |
5 | TraesCS2A01G130800 | chr2D | 77378562 | 77384399 | 5837 | True | 3731.0 | 5570 | 89.6965 | 2 | 5968 | 2 | chr2D.!!$R1 | 5966 |
6 | TraesCS2A01G130800 | chr4D | 456260326 | 456261485 | 1159 | True | 1528.0 | 1528 | 90.5500 | 1189 | 2342 | 1 | chr4D.!!$R1 | 1153 |
7 | TraesCS2A01G130800 | chr4D | 242939517 | 242940153 | 636 | False | 337.0 | 337 | 76.7540 | 2597 | 3277 | 1 | chr4D.!!$F1 | 680 |
8 | TraesCS2A01G130800 | chr7B | 25067212 | 25068428 | 1216 | False | 1376.0 | 1376 | 87.2790 | 1122 | 2342 | 1 | chr7B.!!$F1 | 1220 |
9 | TraesCS2A01G130800 | chr7B | 197405884 | 197406455 | 571 | True | 647.0 | 647 | 87.3290 | 1770 | 2342 | 1 | chr7B.!!$R1 | 572 |
10 | TraesCS2A01G130800 | chr1B | 345335044 | 345336259 | 1215 | False | 1347.0 | 1347 | 86.8760 | 1122 | 2342 | 1 | chr1B.!!$F1 | 1220 |
11 | TraesCS2A01G130800 | chr4A | 237095969 | 237096600 | 631 | True | 318.0 | 318 | 76.4960 | 2600 | 3277 | 1 | chr4A.!!$R1 | 677 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
229 | 231 | 0.034059 | AAGACAGACAGGCTTGGACG | 59.966 | 55.0 | 0.0 | 0.0 | 46.33 | 4.79 | F |
675 | 755 | 0.104934 | AAGACAGACAGACACCCCCT | 60.105 | 55.0 | 0.0 | 0.0 | 0.00 | 4.79 | F |
2239 | 2342 | 0.326264 | GATCAGGTGGGTTGCTCTGT | 59.674 | 55.0 | 0.0 | 0.0 | 0.00 | 3.41 | F |
2712 | 2832 | 0.468226 | AAGGCTCGAAACACACTCCA | 59.532 | 50.0 | 0.0 | 0.0 | 0.00 | 3.86 | F |
2981 | 3108 | 0.747283 | TCTCGTCTCCGGGTAAGAGC | 60.747 | 60.0 | 0.0 | 0.0 | 35.53 | 4.09 | F |
3202 | 3334 | 0.796312 | ACAATCATGTCCGTGCGTTC | 59.204 | 50.0 | 0.0 | 0.0 | 33.41 | 3.95 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1181 | 1267 | 0.107800 | CTCGACGTACTCCTCCTGGA | 60.108 | 60.000 | 0.00 | 0.00 | 40.69 | 3.86 | R |
2373 | 2486 | 0.036952 | CACTGACAGGGTAGCACTGG | 60.037 | 60.000 | 7.51 | 1.49 | 40.23 | 4.00 | R |
3067 | 3194 | 1.138069 | GAAAGCCTAGAGACAGAGGGC | 59.862 | 57.143 | 0.00 | 0.00 | 42.74 | 5.19 | R |
4278 | 4423 | 2.760634 | TTGCTCACCACATACACGAT | 57.239 | 45.000 | 0.00 | 0.00 | 0.00 | 3.73 | R |
4286 | 4431 | 3.698539 | TCAAGTTTTGATTGCTCACCACA | 59.301 | 39.130 | 0.00 | 0.00 | 34.08 | 4.17 | R |
5116 | 5291 | 0.110104 | AGAAGGCTTGCACTGAAGCT | 59.890 | 50.000 | 3.46 | 0.00 | 46.43 | 3.74 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
33 | 35 | 1.676967 | GGAGGCTGCAAGAGGTTGG | 60.677 | 63.158 | 0.00 | 0.00 | 34.07 | 3.77 |
43 | 45 | 2.352127 | GCAAGAGGTTGGATTGTCAAGC | 60.352 | 50.000 | 0.00 | 0.00 | 43.20 | 4.01 |
47 | 49 | 3.960102 | AGAGGTTGGATTGTCAAGCAAAA | 59.040 | 39.130 | 2.81 | 0.00 | 44.70 | 2.44 |
62 | 64 | 5.415701 | TCAAGCAAAATGACATTCCCTCTAC | 59.584 | 40.000 | 0.05 | 0.00 | 0.00 | 2.59 |
103 | 105 | 9.439500 | AAATTTGATTAATCCACATCAAACTGG | 57.561 | 29.630 | 12.90 | 0.00 | 46.88 | 4.00 |
108 | 110 | 1.234821 | TCCACATCAAACTGGTTCGC | 58.765 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
139 | 141 | 4.241999 | GCGGGCACGTCATCATGC | 62.242 | 66.667 | 11.45 | 0.00 | 43.45 | 4.06 |
144 | 146 | 0.316442 | GGCACGTCATCATGCGAATG | 60.316 | 55.000 | 0.00 | 0.00 | 43.02 | 2.67 |
157 | 159 | 1.154488 | CGAATGCGTCGTGGGTTTG | 60.154 | 57.895 | 1.64 | 0.00 | 45.09 | 2.93 |
167 | 169 | 3.608662 | TGGGTTTGCTGCTGCTGC | 61.609 | 61.111 | 22.51 | 22.51 | 40.48 | 5.25 |
168 | 170 | 3.300765 | GGGTTTGCTGCTGCTGCT | 61.301 | 61.111 | 27.67 | 0.00 | 40.48 | 4.24 |
169 | 171 | 2.049433 | GGTTTGCTGCTGCTGCTG | 60.049 | 61.111 | 27.67 | 16.73 | 40.48 | 4.41 |
183 | 185 | 1.540267 | GCTGCTGATGGATATGGCTTG | 59.460 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
214 | 216 | 4.570930 | CAGTGGAAACCTAGGAGAAAGAC | 58.429 | 47.826 | 17.98 | 4.71 | 0.00 | 3.01 |
218 | 220 | 4.283722 | TGGAAACCTAGGAGAAAGACAGAC | 59.716 | 45.833 | 17.98 | 0.00 | 0.00 | 3.51 |
221 | 223 | 3.436243 | ACCTAGGAGAAAGACAGACAGG | 58.564 | 50.000 | 17.98 | 0.00 | 0.00 | 4.00 |
223 | 225 | 2.022718 | AGGAGAAAGACAGACAGGCT | 57.977 | 50.000 | 0.00 | 0.00 | 36.92 | 4.58 |
229 | 231 | 0.034059 | AAGACAGACAGGCTTGGACG | 59.966 | 55.000 | 0.00 | 0.00 | 46.33 | 4.79 |
290 | 292 | 5.527582 | ACGGATTGATTGATTAGTTGGCTAC | 59.472 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
291 | 293 | 5.760253 | CGGATTGATTGATTAGTTGGCTACT | 59.240 | 40.000 | 6.84 | 6.84 | 41.04 | 2.57 |
292 | 294 | 6.293081 | CGGATTGATTGATTAGTTGGCTACTG | 60.293 | 42.308 | 11.92 | 0.00 | 37.73 | 2.74 |
296 | 298 | 6.582636 | TGATTGATTAGTTGGCTACTGGTAG | 58.417 | 40.000 | 11.92 | 3.62 | 37.73 | 3.18 |
299 | 301 | 6.461110 | TGATTAGTTGGCTACTGGTAGTAC | 57.539 | 41.667 | 11.92 | 0.00 | 37.73 | 2.73 |
381 | 384 | 2.102588 | ACCCACGCATTAACCTAGCTAG | 59.897 | 50.000 | 14.20 | 14.20 | 0.00 | 3.42 |
383 | 386 | 3.006967 | CCCACGCATTAACCTAGCTAGAT | 59.993 | 47.826 | 22.70 | 12.66 | 0.00 | 1.98 |
385 | 388 | 5.162075 | CCACGCATTAACCTAGCTAGATAC | 58.838 | 45.833 | 22.70 | 1.57 | 0.00 | 2.24 |
386 | 389 | 5.047943 | CCACGCATTAACCTAGCTAGATACT | 60.048 | 44.000 | 22.70 | 6.47 | 0.00 | 2.12 |
387 | 390 | 6.150641 | CCACGCATTAACCTAGCTAGATACTA | 59.849 | 42.308 | 22.70 | 4.85 | 0.00 | 1.82 |
388 | 391 | 7.244898 | CACGCATTAACCTAGCTAGATACTAG | 58.755 | 42.308 | 22.70 | 6.61 | 37.46 | 2.57 |
389 | 392 | 6.941436 | ACGCATTAACCTAGCTAGATACTAGT | 59.059 | 38.462 | 22.70 | 7.27 | 36.23 | 2.57 |
390 | 393 | 8.099537 | ACGCATTAACCTAGCTAGATACTAGTA | 58.900 | 37.037 | 22.70 | 4.77 | 36.23 | 1.82 |
391 | 394 | 8.605746 | CGCATTAACCTAGCTAGATACTAGTAG | 58.394 | 40.741 | 22.70 | 4.40 | 36.23 | 2.57 |
392 | 395 | 8.895737 | GCATTAACCTAGCTAGATACTAGTAGG | 58.104 | 40.741 | 22.70 | 19.90 | 36.23 | 3.18 |
393 | 396 | 8.895737 | CATTAACCTAGCTAGATACTAGTAGGC | 58.104 | 40.741 | 22.70 | 9.63 | 36.23 | 3.93 |
394 | 397 | 6.707273 | AACCTAGCTAGATACTAGTAGGCT | 57.293 | 41.667 | 22.70 | 19.08 | 36.23 | 4.58 |
395 | 398 | 7.811482 | AACCTAGCTAGATACTAGTAGGCTA | 57.189 | 40.000 | 22.70 | 19.20 | 36.23 | 3.93 |
397 | 400 | 7.191210 | ACCTAGCTAGATACTAGTAGGCTAGA | 58.809 | 42.308 | 31.48 | 19.54 | 45.86 | 2.43 |
445 | 458 | 1.989706 | ACCACCACAATAACCACCAC | 58.010 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
459 | 472 | 1.764854 | ACCACCAAGACGACCCTGT | 60.765 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
460 | 473 | 1.004918 | CCACCAAGACGACCCTGTC | 60.005 | 63.158 | 0.00 | 0.00 | 39.21 | 3.51 |
473 | 486 | 0.517316 | CCCTGTCAGTAAACGCAAGC | 59.483 | 55.000 | 0.00 | 0.00 | 45.62 | 4.01 |
478 | 491 | 2.875317 | TGTCAGTAAACGCAAGCATCAA | 59.125 | 40.909 | 0.00 | 0.00 | 45.62 | 2.57 |
480 | 493 | 2.225491 | TCAGTAAACGCAAGCATCAACC | 59.775 | 45.455 | 0.00 | 0.00 | 45.62 | 3.77 |
486 | 520 | 0.785979 | CGCAAGCATCAACCTTTTGC | 59.214 | 50.000 | 0.00 | 0.00 | 40.40 | 3.68 |
495 | 529 | 4.260743 | GCATCAACCTTTTGCCTTTGTTTC | 60.261 | 41.667 | 0.00 | 0.00 | 32.17 | 2.78 |
512 | 546 | 4.312443 | TGTTTCTAAGTCCGGTTGCTAAG | 58.688 | 43.478 | 0.00 | 0.00 | 0.00 | 2.18 |
526 | 562 | 6.422223 | CGGTTGCTAAGCTTATTCTGTAATG | 58.578 | 40.000 | 6.64 | 0.00 | 0.00 | 1.90 |
544 | 588 | 9.814899 | TCTGTAATGTGTTGAATTTTGACAAAT | 57.185 | 25.926 | 0.50 | 0.00 | 33.72 | 2.32 |
557 | 601 | 8.611654 | AATTTTGACAAATTCCTCCAAATCTG | 57.388 | 30.769 | 0.50 | 0.00 | 38.02 | 2.90 |
558 | 602 | 5.726980 | TTGACAAATTCCTCCAAATCTGG | 57.273 | 39.130 | 0.00 | 0.00 | 45.08 | 3.86 |
559 | 603 | 3.511146 | TGACAAATTCCTCCAAATCTGGC | 59.489 | 43.478 | 0.00 | 0.00 | 43.17 | 4.85 |
560 | 604 | 3.766051 | GACAAATTCCTCCAAATCTGGCT | 59.234 | 43.478 | 0.00 | 0.00 | 43.17 | 4.75 |
562 | 606 | 4.594491 | ACAAATTCCTCCAAATCTGGCTTT | 59.406 | 37.500 | 0.00 | 0.00 | 43.17 | 3.51 |
611 | 680 | 4.470304 | GGATGGGAGTAGTACCAAGTTTCT | 59.530 | 45.833 | 5.35 | 0.00 | 40.73 | 2.52 |
613 | 682 | 5.223449 | TGGGAGTAGTACCAAGTTTCTTG | 57.777 | 43.478 | 0.00 | 2.90 | 32.89 | 3.02 |
616 | 696 | 5.875359 | GGGAGTAGTACCAAGTTTCTTGATG | 59.125 | 44.000 | 10.54 | 0.00 | 0.00 | 3.07 |
622 | 702 | 9.665264 | GTAGTACCAAGTTTCTTGATGAAAAAG | 57.335 | 33.333 | 10.54 | 0.00 | 45.10 | 2.27 |
634 | 714 | 7.378181 | TCTTGATGAAAAAGGGCAGATAAAAC | 58.622 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
635 | 715 | 6.662865 | TGATGAAAAAGGGCAGATAAAACA | 57.337 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
636 | 716 | 6.690530 | TGATGAAAAAGGGCAGATAAAACAG | 58.309 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
666 | 746 | 2.213499 | ACAAAGCGGAAAGACAGACAG | 58.787 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
667 | 747 | 2.158957 | ACAAAGCGGAAAGACAGACAGA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
669 | 749 | 1.040646 | AGCGGAAAGACAGACAGACA | 58.959 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
671 | 751 | 1.784525 | CGGAAAGACAGACAGACACC | 58.215 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
672 | 752 | 1.605712 | CGGAAAGACAGACAGACACCC | 60.606 | 57.143 | 0.00 | 0.00 | 0.00 | 4.61 |
673 | 753 | 1.270893 | GGAAAGACAGACAGACACCCC | 60.271 | 57.143 | 0.00 | 0.00 | 0.00 | 4.95 |
674 | 754 | 0.765510 | AAAGACAGACAGACACCCCC | 59.234 | 55.000 | 0.00 | 0.00 | 0.00 | 5.40 |
675 | 755 | 0.104934 | AAGACAGACAGACACCCCCT | 60.105 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
676 | 756 | 0.543174 | AGACAGACAGACACCCCCTC | 60.543 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
677 | 757 | 1.536662 | ACAGACAGACACCCCCTCC | 60.537 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
678 | 758 | 1.536418 | CAGACAGACACCCCCTCCA | 60.536 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
679 | 759 | 1.229336 | AGACAGACACCCCCTCCAG | 60.229 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
680 | 760 | 2.203998 | ACAGACACCCCCTCCAGG | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
681 | 761 | 3.721706 | CAGACACCCCCTCCAGGC | 61.722 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
732 | 812 | 4.452733 | CCAACCCCGTCTCCTCGC | 62.453 | 72.222 | 0.00 | 0.00 | 0.00 | 5.03 |
786 | 866 | 3.591835 | CCCCTCTCGCTCTCGCTC | 61.592 | 72.222 | 0.00 | 0.00 | 35.26 | 5.03 |
787 | 867 | 2.515991 | CCCTCTCGCTCTCGCTCT | 60.516 | 66.667 | 0.00 | 0.00 | 35.26 | 4.09 |
789 | 869 | 2.625906 | CTCTCGCTCTCGCTCTCG | 59.374 | 66.667 | 0.00 | 0.00 | 35.26 | 4.04 |
790 | 870 | 3.506312 | CTCTCGCTCTCGCTCTCGC | 62.506 | 68.421 | 0.00 | 0.00 | 35.26 | 5.03 |
791 | 871 | 3.572539 | CTCGCTCTCGCTCTCGCT | 61.573 | 66.667 | 0.00 | 0.00 | 35.26 | 4.93 |
792 | 872 | 3.107104 | CTCGCTCTCGCTCTCGCTT | 62.107 | 63.158 | 0.00 | 0.00 | 35.26 | 4.68 |
793 | 873 | 2.948648 | CGCTCTCGCTCTCGCTTG | 60.949 | 66.667 | 0.00 | 0.00 | 35.26 | 4.01 |
794 | 874 | 3.253930 | GCTCTCGCTCTCGCTTGC | 61.254 | 66.667 | 0.00 | 0.00 | 35.26 | 4.01 |
799 | 879 | 4.126390 | CGCTCTCGCTTGCGTGTG | 62.126 | 66.667 | 14.70 | 13.51 | 46.09 | 3.82 |
800 | 880 | 3.038417 | GCTCTCGCTTGCGTGTGT | 61.038 | 61.111 | 14.70 | 0.00 | 0.00 | 3.72 |
801 | 881 | 2.849007 | CTCTCGCTTGCGTGTGTG | 59.151 | 61.111 | 14.70 | 4.52 | 0.00 | 3.82 |
802 | 882 | 1.951130 | CTCTCGCTTGCGTGTGTGT | 60.951 | 57.895 | 14.70 | 0.00 | 0.00 | 3.72 |
803 | 883 | 2.150809 | CTCTCGCTTGCGTGTGTGTG | 62.151 | 60.000 | 14.70 | 0.33 | 0.00 | 3.82 |
804 | 884 | 2.510464 | TCGCTTGCGTGTGTGTGT | 60.510 | 55.556 | 14.70 | 0.00 | 0.00 | 3.72 |
822 | 905 | 3.244422 | TGTGTGTGTCTCCATTAACTCCC | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
899 | 982 | 1.812922 | CCGCTGAAGGTGCTAGCTG | 60.813 | 63.158 | 17.23 | 0.00 | 35.36 | 4.24 |
1172 | 1258 | 4.889856 | CGATGCCGACCGCCATCA | 62.890 | 66.667 | 12.68 | 0.00 | 38.22 | 3.07 |
1203 | 1289 | 2.708255 | GAGGAGTACGTCGAGCGG | 59.292 | 66.667 | 0.00 | 0.00 | 46.52 | 5.52 |
1287 | 1373 | 3.376078 | TACCTGTGGACGGACGGC | 61.376 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
1374 | 1460 | 4.509737 | GCCACCTACGAGGGCGAC | 62.510 | 72.222 | 0.00 | 0.00 | 40.58 | 5.19 |
1440 | 1526 | 2.666098 | CGGGGACACCTACAAGGGG | 61.666 | 68.421 | 0.00 | 0.00 | 46.86 | 4.79 |
1468 | 1554 | 1.675641 | ATGAACCTCAAGCACGGCC | 60.676 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
1573 | 1659 | 2.505557 | GCAACGGGACCGAGTACG | 60.506 | 66.667 | 18.80 | 1.67 | 42.83 | 3.67 |
2239 | 2342 | 0.326264 | GATCAGGTGGGTTGCTCTGT | 59.674 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2267 | 2370 | 2.366916 | CCCTCCATTAGCGACTCTGAAT | 59.633 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2285 | 2398 | 5.068198 | TCTGAATTATGCAGATTTTGGAGCC | 59.932 | 40.000 | 0.00 | 0.00 | 37.46 | 4.70 |
2292 | 2405 | 1.475682 | CAGATTTTGGAGCCTTGGCTC | 59.524 | 52.381 | 28.17 | 28.17 | 36.20 | 4.70 |
2319 | 2432 | 6.542370 | GGAATTTGATCAACCGGAGAGATTTA | 59.458 | 38.462 | 9.46 | 0.00 | 0.00 | 1.40 |
2354 | 2467 | 4.739195 | GCACCTTTGCCGATTTATTTACA | 58.261 | 39.130 | 0.00 | 0.00 | 43.66 | 2.41 |
2402 | 2515 | 2.979678 | ACCCTGTCAGTGGTGAATTAGT | 59.020 | 45.455 | 11.06 | 0.00 | 33.27 | 2.24 |
2403 | 2516 | 4.164981 | ACCCTGTCAGTGGTGAATTAGTA | 58.835 | 43.478 | 11.06 | 0.00 | 33.27 | 1.82 |
2404 | 2517 | 4.020485 | ACCCTGTCAGTGGTGAATTAGTAC | 60.020 | 45.833 | 11.06 | 0.00 | 33.27 | 2.73 |
2486 | 2602 | 2.163818 | TCCGATTTCGATACATGGCC | 57.836 | 50.000 | 0.00 | 0.00 | 43.02 | 5.36 |
2492 | 2608 | 0.546122 | TTCGATACATGGCCAAGGCT | 59.454 | 50.000 | 10.96 | 0.00 | 41.60 | 4.58 |
2493 | 2609 | 0.546122 | TCGATACATGGCCAAGGCTT | 59.454 | 50.000 | 10.96 | 0.00 | 41.60 | 4.35 |
2501 | 2617 | 0.608035 | TGGCCAAGGCTTTTCTACCG | 60.608 | 55.000 | 0.61 | 0.00 | 41.60 | 4.02 |
2513 | 2629 | 2.933495 | TTCTACCGTGTGGATTCTCG | 57.067 | 50.000 | 0.00 | 0.00 | 39.21 | 4.04 |
2622 | 2742 | 1.538687 | ATGCAGTTGGGAAGCAAGGC | 61.539 | 55.000 | 0.00 | 0.00 | 42.15 | 4.35 |
2640 | 2760 | 1.810030 | CCCGGTTACGCTTGAGCTC | 60.810 | 63.158 | 6.82 | 6.82 | 39.22 | 4.09 |
2712 | 2832 | 0.468226 | AAGGCTCGAAACACACTCCA | 59.532 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2724 | 2844 | 0.889186 | ACACTCCACGGCACAATTCC | 60.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2785 | 2905 | 1.523758 | GTTGGTCATCACTCACCACC | 58.476 | 55.000 | 0.00 | 0.00 | 42.61 | 4.61 |
2809 | 2929 | 7.161773 | CCCCCATTTCAAAGCTACATATATG | 57.838 | 40.000 | 11.29 | 11.29 | 0.00 | 1.78 |
2810 | 2930 | 6.947733 | CCCCCATTTCAAAGCTACATATATGA | 59.052 | 38.462 | 19.63 | 2.59 | 0.00 | 2.15 |
2811 | 2931 | 7.616935 | CCCCCATTTCAAAGCTACATATATGAT | 59.383 | 37.037 | 19.63 | 6.41 | 0.00 | 2.45 |
2812 | 2932 | 8.464404 | CCCCATTTCAAAGCTACATATATGATG | 58.536 | 37.037 | 19.63 | 11.57 | 0.00 | 3.07 |
2813 | 2933 | 9.234827 | CCCATTTCAAAGCTACATATATGATGA | 57.765 | 33.333 | 19.63 | 9.88 | 0.00 | 2.92 |
2839 | 2959 | 1.555075 | TGATGTACCTGCCTTCTGGTC | 59.445 | 52.381 | 0.00 | 0.00 | 42.61 | 4.02 |
2981 | 3108 | 0.747283 | TCTCGTCTCCGGGTAAGAGC | 60.747 | 60.000 | 0.00 | 0.00 | 35.53 | 4.09 |
3067 | 3194 | 4.082245 | AGTGAAGGTTTGTTCTTTGTGGTG | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
3202 | 3334 | 0.796312 | ACAATCATGTCCGTGCGTTC | 59.204 | 50.000 | 0.00 | 0.00 | 33.41 | 3.95 |
3232 | 3364 | 4.215613 | ACTCTAGTGACCAAATTTTTCGGC | 59.784 | 41.667 | 0.00 | 0.00 | 0.00 | 5.54 |
3244 | 3376 | 4.864704 | ATTTTTCGGCCTACATTGTGTT | 57.135 | 36.364 | 0.00 | 0.00 | 0.00 | 3.32 |
3450 | 3594 | 9.585099 | CTATTCTGCTCTCATAATTCTATCCAC | 57.415 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
3489 | 3633 | 4.717629 | TCGTCTCTTGGCCGCACG | 62.718 | 66.667 | 0.00 | 1.55 | 0.00 | 5.34 |
3898 | 4042 | 6.264292 | ACCTTACAATGTGCACTGTTTGATTA | 59.736 | 34.615 | 24.59 | 11.60 | 0.00 | 1.75 |
3905 | 4049 | 5.587289 | TGTGCACTGTTTGATTAAAGGTTC | 58.413 | 37.500 | 19.41 | 0.00 | 0.00 | 3.62 |
3960 | 4104 | 2.565391 | TCGGCTTTCAAGAGGATACACA | 59.435 | 45.455 | 0.00 | 0.00 | 41.41 | 3.72 |
4011 | 4155 | 7.236225 | GGGTAAGCTAGATATTTTACCACCCTA | 59.764 | 40.741 | 12.68 | 0.00 | 44.30 | 3.53 |
4103 | 4247 | 4.380531 | TCTCTGTGTTTGATCCTTGTGTC | 58.619 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
4176 | 4320 | 1.473258 | TCGAGCCATTTTTCATGGGG | 58.527 | 50.000 | 3.07 | 0.00 | 39.53 | 4.96 |
4248 | 4393 | 9.284968 | CAAGGAAATTTGGTACTTCTCTTTCTA | 57.715 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
4278 | 4423 | 9.844790 | CAGCATTTTAATTCTAATGAGAACACA | 57.155 | 29.630 | 13.69 | 0.00 | 44.50 | 3.72 |
4286 | 4431 | 8.948631 | AATTCTAATGAGAACACATCGTGTAT | 57.051 | 30.769 | 0.00 | 0.00 | 46.79 | 2.29 |
4428 | 4573 | 9.130661 | TCTTCTGTGACCTATTCAATTTCAAAA | 57.869 | 29.630 | 0.00 | 0.00 | 35.39 | 2.44 |
4567 | 4738 | 6.018994 | GCTGAACAGTAGGTTGTAAATATCCG | 60.019 | 42.308 | 3.77 | 0.00 | 40.63 | 4.18 |
4575 | 4746 | 8.042515 | AGTAGGTTGTAAATATCCGCAAAACTA | 58.957 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
4661 | 4835 | 8.719648 | GGCATTTACTTGAGATATTCATCTGAG | 58.280 | 37.037 | 0.00 | 0.00 | 41.78 | 3.35 |
4680 | 4854 | 7.377766 | TCTGAGTATTTGTGAATAAACAGGC | 57.622 | 36.000 | 0.00 | 0.00 | 35.82 | 4.85 |
4975 | 5149 | 3.244033 | AGAGGACAGCTGAAAAGATCG | 57.756 | 47.619 | 23.35 | 0.00 | 0.00 | 3.69 |
4976 | 5150 | 2.564947 | AGAGGACAGCTGAAAAGATCGT | 59.435 | 45.455 | 23.35 | 7.74 | 0.00 | 3.73 |
4978 | 5152 | 2.300152 | AGGACAGCTGAAAAGATCGTGA | 59.700 | 45.455 | 23.35 | 0.00 | 0.00 | 4.35 |
4988 | 5162 | 4.212004 | TGAAAAGATCGTGAAGCTTGACAG | 59.788 | 41.667 | 16.45 | 8.89 | 0.00 | 3.51 |
5015 | 5190 | 4.469883 | CCCCCGATGCAGATGAAG | 57.530 | 61.111 | 0.00 | 0.00 | 0.00 | 3.02 |
5016 | 5191 | 1.528824 | CCCCCGATGCAGATGAAGT | 59.471 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
5034 | 5209 | 6.564709 | TGAAGTTTGAGATGTCAATGGAAG | 57.435 | 37.500 | 6.07 | 0.00 | 42.41 | 3.46 |
5035 | 5210 | 6.298361 | TGAAGTTTGAGATGTCAATGGAAGA | 58.702 | 36.000 | 6.07 | 0.00 | 42.41 | 2.87 |
5036 | 5211 | 6.772233 | TGAAGTTTGAGATGTCAATGGAAGAA | 59.228 | 34.615 | 6.07 | 0.00 | 42.41 | 2.52 |
5079 | 5254 | 1.073548 | GGGGTGCCCGAACTTGTAA | 59.926 | 57.895 | 0.54 | 0.00 | 36.85 | 2.41 |
5115 | 5290 | 0.618458 | TACAAGGATGGGGTGAGTGC | 59.382 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5116 | 5291 | 1.379916 | CAAGGATGGGGTGAGTGCA | 59.620 | 57.895 | 0.00 | 0.00 | 0.00 | 4.57 |
5124 | 5299 | 1.072159 | GGGTGAGTGCAGCTTCAGT | 59.928 | 57.895 | 0.00 | 0.00 | 42.08 | 3.41 |
5135 | 5310 | 2.638744 | GCTTCAGTGCAAGCCTTCT | 58.361 | 52.632 | 13.28 | 0.00 | 42.68 | 2.85 |
5138 | 5313 | 0.473755 | TTCAGTGCAAGCCTTCTGGA | 59.526 | 50.000 | 0.00 | 0.00 | 34.57 | 3.86 |
5139 | 5314 | 0.694771 | TCAGTGCAAGCCTTCTGGAT | 59.305 | 50.000 | 0.00 | 0.00 | 34.57 | 3.41 |
5144 | 5319 | 0.957362 | GCAAGCCTTCTGGATATGGC | 59.043 | 55.000 | 0.00 | 0.00 | 45.21 | 4.40 |
5164 | 5339 | 1.471684 | CAGAGTTGCTCCAGAAATGGC | 59.528 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
5275 | 5453 | 5.488341 | TGGAGTTGGAGATGTTAACTTAGC | 58.512 | 41.667 | 7.22 | 0.00 | 34.99 | 3.09 |
5299 | 5479 | 6.422400 | GCGATTCAAGTTAAAGATAGGAGAGG | 59.578 | 42.308 | 0.00 | 0.00 | 0.00 | 3.69 |
5340 | 5520 | 1.541379 | GCCCGGGAGTTGTAAATGTT | 58.459 | 50.000 | 29.31 | 0.00 | 0.00 | 2.71 |
5345 | 5525 | 4.082949 | CCCGGGAGTTGTAAATGTTTCTTC | 60.083 | 45.833 | 18.48 | 0.00 | 0.00 | 2.87 |
5348 | 5528 | 6.238925 | CCGGGAGTTGTAAATGTTTCTTCTTT | 60.239 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
5369 | 5549 | 4.387026 | TTTTTCACCTGATGATGAGGGT | 57.613 | 40.909 | 2.34 | 0.00 | 37.11 | 4.34 |
5370 | 5550 | 5.512942 | TTTTTCACCTGATGATGAGGGTA | 57.487 | 39.130 | 2.34 | 0.00 | 37.11 | 3.69 |
5414 | 5595 | 7.793927 | TTGTGGGGTAAAAATTTGTTGATTC | 57.206 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
5417 | 5598 | 7.443575 | TGTGGGGTAAAAATTTGTTGATTCATG | 59.556 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
5418 | 5599 | 7.659390 | GTGGGGTAAAAATTTGTTGATTCATGA | 59.341 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
5419 | 5600 | 7.659390 | TGGGGTAAAAATTTGTTGATTCATGAC | 59.341 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
5429 | 5612 | 4.152223 | TGTTGATTCATGACTACGCTTGTG | 59.848 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
5451 | 5634 | 0.773014 | CATACATGCCCATGGGAGGA | 59.227 | 55.000 | 36.00 | 19.92 | 42.91 | 3.71 |
5475 | 5658 | 4.458295 | ACATGCTTGGATTTCTTCTGTCTG | 59.542 | 41.667 | 4.44 | 0.00 | 0.00 | 3.51 |
5476 | 5659 | 2.816087 | TGCTTGGATTTCTTCTGTCTGC | 59.184 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
5498 | 5681 | 4.381566 | GCACATTGTACATTGTTTTCCGTC | 59.618 | 41.667 | 18.34 | 3.50 | 0.00 | 4.79 |
5515 | 5698 | 3.136123 | CTGGGACCTGGCATTGCG | 61.136 | 66.667 | 1.91 | 0.00 | 0.00 | 4.85 |
5516 | 5699 | 4.738998 | TGGGACCTGGCATTGCGG | 62.739 | 66.667 | 1.91 | 1.67 | 0.00 | 5.69 |
5520 | 5703 | 4.764771 | ACCTGGCATTGCGGGCAT | 62.765 | 61.111 | 15.98 | 0.00 | 42.89 | 4.40 |
5521 | 5704 | 2.519063 | CCTGGCATTGCGGGCATA | 60.519 | 61.111 | 1.91 | 0.00 | 42.89 | 3.14 |
5522 | 5705 | 2.558286 | CCTGGCATTGCGGGCATAG | 61.558 | 63.158 | 1.91 | 0.00 | 42.89 | 2.23 |
5523 | 5706 | 1.526686 | CTGGCATTGCGGGCATAGA | 60.527 | 57.895 | 1.91 | 0.00 | 42.89 | 1.98 |
5524 | 5707 | 1.512996 | CTGGCATTGCGGGCATAGAG | 61.513 | 60.000 | 1.91 | 0.00 | 42.89 | 2.43 |
5530 | 5713 | 1.329913 | TTGCGGGCATAGAGAGAGCA | 61.330 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5554 | 5737 | 2.887152 | AGTGATGCCTCAGTTTTGTTCC | 59.113 | 45.455 | 0.00 | 0.00 | 30.58 | 3.62 |
5556 | 5739 | 1.200020 | GATGCCTCAGTTTTGTTCCCG | 59.800 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
5557 | 5740 | 0.821711 | TGCCTCAGTTTTGTTCCCGG | 60.822 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
5558 | 5741 | 1.524008 | GCCTCAGTTTTGTTCCCGGG | 61.524 | 60.000 | 16.85 | 16.85 | 0.00 | 5.73 |
5559 | 5742 | 1.524008 | CCTCAGTTTTGTTCCCGGGC | 61.524 | 60.000 | 18.49 | 2.59 | 0.00 | 6.13 |
5561 | 5744 | 0.821711 | TCAGTTTTGTTCCCGGGCTG | 60.822 | 55.000 | 18.49 | 15.73 | 0.00 | 4.85 |
5562 | 5745 | 0.821711 | CAGTTTTGTTCCCGGGCTGA | 60.822 | 55.000 | 18.49 | 0.19 | 0.00 | 4.26 |
5642 | 5832 | 1.456287 | AGGCCAACTGAACCTCACC | 59.544 | 57.895 | 5.01 | 0.00 | 0.00 | 4.02 |
5643 | 5833 | 1.062488 | AGGCCAACTGAACCTCACCT | 61.062 | 55.000 | 5.01 | 0.00 | 0.00 | 4.00 |
5644 | 5834 | 0.606673 | GGCCAACTGAACCTCACCTC | 60.607 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5645 | 5835 | 0.108585 | GCCAACTGAACCTCACCTCA | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5646 | 5836 | 1.884235 | CCAACTGAACCTCACCTCAC | 58.116 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5647 | 5837 | 1.543429 | CCAACTGAACCTCACCTCACC | 60.543 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
5648 | 5838 | 1.417890 | CAACTGAACCTCACCTCACCT | 59.582 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
5649 | 5839 | 1.343069 | ACTGAACCTCACCTCACCTC | 58.657 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5650 | 5840 | 1.342074 | CTGAACCTCACCTCACCTCA | 58.658 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5651 | 5841 | 1.274728 | CTGAACCTCACCTCACCTCAG | 59.725 | 57.143 | 0.00 | 0.00 | 0.00 | 3.35 |
5652 | 5842 | 1.343069 | GAACCTCACCTCACCTCAGT | 58.657 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
5726 | 5916 | 2.089201 | TGATGGCTTGTCTGCAATCAG | 58.911 | 47.619 | 2.77 | 0.00 | 45.39 | 2.90 |
5737 | 5927 | 2.342956 | GCAATCAGCAAAAGTCGCG | 58.657 | 52.632 | 0.00 | 0.00 | 44.79 | 5.87 |
5799 | 5989 | 2.450320 | CCTCCCCTGCCATGAGAGG | 61.450 | 68.421 | 0.00 | 0.00 | 38.32 | 3.69 |
5820 | 6010 | 1.542108 | GGCAGATTCATCGGCTAGCTT | 60.542 | 52.381 | 15.72 | 0.00 | 45.40 | 3.74 |
5821 | 6011 | 2.289072 | GGCAGATTCATCGGCTAGCTTA | 60.289 | 50.000 | 15.72 | 3.13 | 45.40 | 3.09 |
5822 | 6012 | 2.992543 | GCAGATTCATCGGCTAGCTTAG | 59.007 | 50.000 | 15.72 | 6.86 | 43.27 | 2.18 |
5823 | 6013 | 3.583806 | CAGATTCATCGGCTAGCTTAGG | 58.416 | 50.000 | 15.72 | 4.93 | 0.00 | 2.69 |
5824 | 6014 | 3.006323 | CAGATTCATCGGCTAGCTTAGGT | 59.994 | 47.826 | 15.72 | 0.00 | 0.00 | 3.08 |
5825 | 6015 | 3.643792 | AGATTCATCGGCTAGCTTAGGTT | 59.356 | 43.478 | 15.72 | 0.00 | 0.00 | 3.50 |
5829 | 6019 | 0.535335 | TCGGCTAGCTTAGGTTGGTG | 59.465 | 55.000 | 15.72 | 0.00 | 0.00 | 4.17 |
5831 | 6021 | 0.253327 | GGCTAGCTTAGGTTGGTGCT | 59.747 | 55.000 | 15.72 | 0.00 | 39.30 | 4.40 |
5836 | 6026 | 2.230660 | AGCTTAGGTTGGTGCTTGTTC | 58.769 | 47.619 | 0.00 | 0.00 | 30.96 | 3.18 |
5848 | 6038 | 3.303791 | GGTGCTTGTTCGAGTTTAACCTG | 60.304 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
5849 | 6039 | 3.558418 | GTGCTTGTTCGAGTTTAACCTGA | 59.442 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
5850 | 6040 | 3.558418 | TGCTTGTTCGAGTTTAACCTGAC | 59.442 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
5851 | 6041 | 3.808174 | GCTTGTTCGAGTTTAACCTGACT | 59.192 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
5852 | 6042 | 4.318831 | GCTTGTTCGAGTTTAACCTGACTG | 60.319 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
5877 | 6067 | 8.573885 | TGAATCAGATCAATCTAAATTGGATGC | 58.426 | 33.333 | 0.00 | 0.00 | 42.19 | 3.91 |
5878 | 6068 | 8.473358 | AATCAGATCAATCTAAATTGGATGCA | 57.527 | 30.769 | 0.00 | 0.00 | 42.19 | 3.96 |
5903 | 6093 | 5.546621 | AACTAGAAGGAACTGCAACAGTA | 57.453 | 39.130 | 0.00 | 0.00 | 44.62 | 2.74 |
5905 | 6095 | 5.482908 | ACTAGAAGGAACTGCAACAGTATG | 58.517 | 41.667 | 0.00 | 0.00 | 44.62 | 2.39 |
5927 | 6117 | 9.313118 | GTATGTCTGATAACAACATCACATGTA | 57.687 | 33.333 | 0.00 | 0.00 | 44.07 | 2.29 |
5950 | 6140 | 8.883302 | TGTATCCATCAATCTAAATCAGATCCA | 58.117 | 33.333 | 0.00 | 0.00 | 43.56 | 3.41 |
5953 | 6143 | 6.559921 | TCCATCAATCTAAATCAGATCCAGGA | 59.440 | 38.462 | 0.00 | 0.00 | 43.56 | 3.86 |
5954 | 6144 | 7.239143 | TCCATCAATCTAAATCAGATCCAGGAT | 59.761 | 37.037 | 0.00 | 0.00 | 43.56 | 3.24 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 1.885388 | CTCCGTTTGTGGTGCGTGA | 60.885 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
4 | 5 | 2.594592 | AGCCTCCGTTTGTGGTGC | 60.595 | 61.111 | 0.00 | 0.00 | 0.00 | 5.01 |
43 | 45 | 6.840780 | AAAGGTAGAGGGAATGTCATTTTG | 57.159 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
71 | 73 | 9.656040 | TGATGTGGATTAATCAAATTTTCCAAG | 57.344 | 29.630 | 17.07 | 0.00 | 36.05 | 3.61 |
81 | 83 | 7.537596 | AACCAGTTTGATGTGGATTAATCAA | 57.462 | 32.000 | 17.07 | 2.74 | 40.21 | 2.57 |
82 | 84 | 6.128035 | CGAACCAGTTTGATGTGGATTAATCA | 60.128 | 38.462 | 17.07 | 0.00 | 37.27 | 2.57 |
83 | 85 | 6.258160 | CGAACCAGTTTGATGTGGATTAATC | 58.742 | 40.000 | 6.93 | 6.93 | 37.27 | 1.75 |
84 | 86 | 5.393027 | GCGAACCAGTTTGATGTGGATTAAT | 60.393 | 40.000 | 1.81 | 0.00 | 37.27 | 1.40 |
86 | 88 | 3.438781 | GCGAACCAGTTTGATGTGGATTA | 59.561 | 43.478 | 1.81 | 0.00 | 37.27 | 1.75 |
88 | 90 | 1.812571 | GCGAACCAGTTTGATGTGGAT | 59.187 | 47.619 | 1.81 | 0.00 | 37.27 | 3.41 |
91 | 93 | 0.586319 | ACGCGAACCAGTTTGATGTG | 59.414 | 50.000 | 15.93 | 0.00 | 0.00 | 3.21 |
92 | 94 | 1.002900 | CAACGCGAACCAGTTTGATGT | 60.003 | 47.619 | 15.93 | 0.00 | 0.00 | 3.06 |
93 | 95 | 1.673760 | CAACGCGAACCAGTTTGATG | 58.326 | 50.000 | 15.93 | 0.00 | 0.00 | 3.07 |
103 | 105 | 1.061887 | ACAACAGTGCAACGCGAAC | 59.938 | 52.632 | 15.93 | 5.43 | 45.86 | 3.95 |
144 | 146 | 4.683334 | GCAGCAAACCCACGACGC | 62.683 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
151 | 153 | 3.300765 | AGCAGCAGCAGCAAACCC | 61.301 | 61.111 | 12.92 | 0.00 | 45.49 | 4.11 |
157 | 159 | 0.534427 | TATCCATCAGCAGCAGCAGC | 60.534 | 55.000 | 3.17 | 0.46 | 45.49 | 5.25 |
167 | 169 | 4.001652 | CAGTAGCAAGCCATATCCATCAG | 58.998 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
168 | 170 | 3.392285 | ACAGTAGCAAGCCATATCCATCA | 59.608 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
169 | 171 | 3.750130 | CACAGTAGCAAGCCATATCCATC | 59.250 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
183 | 185 | 0.875059 | GGTTTCCACTGCACAGTAGC | 59.125 | 55.000 | 2.38 | 0.00 | 40.20 | 3.58 |
214 | 216 | 2.046892 | CCCGTCCAAGCCTGTCTG | 60.047 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
218 | 220 | 4.785453 | GCCTCCCGTCCAAGCCTG | 62.785 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
221 | 223 | 3.036429 | ATGAGCCTCCCGTCCAAGC | 62.036 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
223 | 225 | 2.669133 | CCATGAGCCTCCCGTCCAA | 61.669 | 63.158 | 0.00 | 0.00 | 0.00 | 3.53 |
224 | 226 | 3.083349 | CCATGAGCCTCCCGTCCA | 61.083 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
229 | 231 | 3.092511 | TCTGCCCATGAGCCTCCC | 61.093 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
296 | 298 | 4.142293 | GCACAAGGGTGGTAGTAGTAGTAC | 60.142 | 50.000 | 6.61 | 6.61 | 45.38 | 2.73 |
299 | 301 | 3.521947 | GCACAAGGGTGGTAGTAGTAG | 57.478 | 52.381 | 0.00 | 0.00 | 45.38 | 2.57 |
381 | 384 | 6.363167 | TCCTCTGTCTAGCCTACTAGTATC | 57.637 | 45.833 | 2.33 | 0.00 | 45.32 | 2.24 |
383 | 386 | 5.427806 | TGTTCCTCTGTCTAGCCTACTAGTA | 59.572 | 44.000 | 1.89 | 1.89 | 45.32 | 1.82 |
385 | 388 | 4.783055 | TGTTCCTCTGTCTAGCCTACTAG | 58.217 | 47.826 | 0.00 | 0.00 | 46.30 | 2.57 |
386 | 389 | 4.857130 | TGTTCCTCTGTCTAGCCTACTA | 57.143 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
387 | 390 | 3.741245 | TGTTCCTCTGTCTAGCCTACT | 57.259 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
388 | 391 | 4.017808 | TCTTGTTCCTCTGTCTAGCCTAC | 58.982 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
389 | 392 | 4.017808 | GTCTTGTTCCTCTGTCTAGCCTA | 58.982 | 47.826 | 0.00 | 0.00 | 0.00 | 3.93 |
390 | 393 | 2.829120 | GTCTTGTTCCTCTGTCTAGCCT | 59.171 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
391 | 394 | 2.563179 | TGTCTTGTTCCTCTGTCTAGCC | 59.437 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
392 | 395 | 3.944055 | TGTCTTGTTCCTCTGTCTAGC | 57.056 | 47.619 | 0.00 | 0.00 | 0.00 | 3.42 |
393 | 396 | 4.241681 | GCTTGTCTTGTTCCTCTGTCTAG | 58.758 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
394 | 397 | 3.641436 | TGCTTGTCTTGTTCCTCTGTCTA | 59.359 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
395 | 398 | 2.435805 | TGCTTGTCTTGTTCCTCTGTCT | 59.564 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
396 | 399 | 2.545946 | GTGCTTGTCTTGTTCCTCTGTC | 59.454 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
397 | 400 | 2.565841 | GTGCTTGTCTTGTTCCTCTGT | 58.434 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
445 | 458 | 1.254026 | TACTGACAGGGTCGTCTTGG | 58.746 | 55.000 | 7.51 | 0.00 | 36.82 | 3.61 |
459 | 472 | 2.225491 | GGTTGATGCTTGCGTTTACTGA | 59.775 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
460 | 473 | 2.226437 | AGGTTGATGCTTGCGTTTACTG | 59.774 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
473 | 486 | 5.118286 | AGAAACAAAGGCAAAAGGTTGATG | 58.882 | 37.500 | 0.00 | 0.00 | 36.83 | 3.07 |
478 | 491 | 5.163447 | GGACTTAGAAACAAAGGCAAAAGGT | 60.163 | 40.000 | 0.00 | 0.00 | 33.32 | 3.50 |
480 | 493 | 4.976116 | CGGACTTAGAAACAAAGGCAAAAG | 59.024 | 41.667 | 0.00 | 0.00 | 33.32 | 2.27 |
486 | 520 | 3.304458 | GCAACCGGACTTAGAAACAAAGG | 60.304 | 47.826 | 9.46 | 0.00 | 0.00 | 3.11 |
495 | 529 | 2.674796 | AGCTTAGCAACCGGACTTAG | 57.325 | 50.000 | 9.46 | 7.00 | 0.00 | 2.18 |
555 | 599 | 4.201792 | CGTGATTCTCATTCTGAAAGCCAG | 60.202 | 45.833 | 0.00 | 0.00 | 44.27 | 4.85 |
556 | 600 | 3.686241 | CGTGATTCTCATTCTGAAAGCCA | 59.314 | 43.478 | 0.00 | 0.00 | 0.00 | 4.75 |
557 | 601 | 3.064545 | CCGTGATTCTCATTCTGAAAGCC | 59.935 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
558 | 602 | 3.064545 | CCCGTGATTCTCATTCTGAAAGC | 59.935 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
559 | 603 | 3.624861 | CCCCGTGATTCTCATTCTGAAAG | 59.375 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
560 | 604 | 3.609853 | CCCCGTGATTCTCATTCTGAAA | 58.390 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
562 | 606 | 1.486310 | CCCCCGTGATTCTCATTCTGA | 59.514 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
568 | 612 | 2.000701 | ATGGCCCCCGTGATTCTCA | 61.001 | 57.895 | 0.00 | 0.00 | 0.00 | 3.27 |
569 | 613 | 1.526917 | CATGGCCCCCGTGATTCTC | 60.527 | 63.158 | 0.00 | 0.00 | 42.73 | 2.87 |
572 | 616 | 4.141876 | CCCATGGCCCCCGTGATT | 62.142 | 66.667 | 6.09 | 0.00 | 42.73 | 2.57 |
591 | 656 | 4.903049 | TCAAGAAACTTGGTACTACTCCCA | 59.097 | 41.667 | 10.84 | 0.00 | 0.00 | 4.37 |
594 | 659 | 8.603242 | TTTCATCAAGAAACTTGGTACTACTC | 57.397 | 34.615 | 10.84 | 0.00 | 41.17 | 2.59 |
595 | 660 | 8.974060 | TTTTCATCAAGAAACTTGGTACTACT | 57.026 | 30.769 | 10.84 | 0.00 | 45.48 | 2.57 |
597 | 662 | 8.846211 | CCTTTTTCATCAAGAAACTTGGTACTA | 58.154 | 33.333 | 10.84 | 0.00 | 45.48 | 1.82 |
611 | 680 | 7.060383 | TGTTTTATCTGCCCTTTTTCATCAA | 57.940 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
613 | 682 | 5.578336 | GCTGTTTTATCTGCCCTTTTTCATC | 59.422 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
616 | 696 | 4.881920 | TGCTGTTTTATCTGCCCTTTTTC | 58.118 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
622 | 702 | 2.019984 | CCTCTGCTGTTTTATCTGCCC | 58.980 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
634 | 714 | 1.335324 | CCGCTTTGTTTTCCTCTGCTG | 60.335 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
635 | 715 | 0.954452 | CCGCTTTGTTTTCCTCTGCT | 59.046 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
636 | 716 | 0.951558 | TCCGCTTTGTTTTCCTCTGC | 59.048 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
672 | 752 | 4.748798 | AGGTGGAGGCCTGGAGGG | 62.749 | 72.222 | 12.00 | 0.00 | 37.50 | 4.30 |
673 | 753 | 3.086600 | GAGGTGGAGGCCTGGAGG | 61.087 | 72.222 | 12.00 | 0.00 | 39.34 | 4.30 |
674 | 754 | 3.086600 | GGAGGTGGAGGCCTGGAG | 61.087 | 72.222 | 12.00 | 0.00 | 39.34 | 3.86 |
675 | 755 | 4.741239 | GGGAGGTGGAGGCCTGGA | 62.741 | 72.222 | 12.00 | 0.00 | 39.34 | 3.86 |
677 | 757 | 4.748798 | AGGGGAGGTGGAGGCCTG | 62.749 | 72.222 | 12.00 | 0.00 | 39.34 | 4.85 |
678 | 758 | 4.423209 | GAGGGGAGGTGGAGGCCT | 62.423 | 72.222 | 3.86 | 3.86 | 42.53 | 5.19 |
681 | 761 | 4.825679 | GGGGAGGGGAGGTGGAGG | 62.826 | 77.778 | 0.00 | 0.00 | 0.00 | 4.30 |
682 | 762 | 3.700350 | AGGGGAGGGGAGGTGGAG | 61.700 | 72.222 | 0.00 | 0.00 | 0.00 | 3.86 |
738 | 818 | 1.909700 | AAGAAATGCGCTTTGGGAGA | 58.090 | 45.000 | 9.73 | 0.00 | 0.00 | 3.71 |
786 | 866 | 2.246397 | CACACACACGCAAGCGAG | 59.754 | 61.111 | 22.30 | 15.97 | 42.83 | 5.03 |
787 | 867 | 2.510464 | ACACACACACGCAAGCGA | 60.510 | 55.556 | 22.30 | 0.00 | 42.83 | 4.93 |
789 | 869 | 1.583451 | CACACACACACACGCAAGC | 60.583 | 57.895 | 0.00 | 0.00 | 45.62 | 4.01 |
791 | 871 | 0.672091 | AGACACACACACACACGCAA | 60.672 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
792 | 872 | 1.079474 | AGACACACACACACACGCA | 60.079 | 52.632 | 0.00 | 0.00 | 0.00 | 5.24 |
793 | 873 | 1.636340 | GAGACACACACACACACGC | 59.364 | 57.895 | 0.00 | 0.00 | 0.00 | 5.34 |
794 | 874 | 0.459411 | TGGAGACACACACACACACG | 60.459 | 55.000 | 0.00 | 0.00 | 33.40 | 4.49 |
795 | 875 | 3.451793 | TGGAGACACACACACACAC | 57.548 | 52.632 | 0.00 | 0.00 | 33.40 | 3.82 |
822 | 905 | 4.169696 | TGAGGCGGGTAATGGCGG | 62.170 | 66.667 | 0.00 | 0.00 | 36.92 | 6.13 |
883 | 966 | 0.179936 | ATCCAGCTAGCACCTTCAGC | 59.820 | 55.000 | 18.83 | 0.00 | 35.49 | 4.26 |
884 | 967 | 1.202627 | GGATCCAGCTAGCACCTTCAG | 60.203 | 57.143 | 18.83 | 0.00 | 0.00 | 3.02 |
885 | 968 | 0.833287 | GGATCCAGCTAGCACCTTCA | 59.167 | 55.000 | 18.83 | 0.00 | 0.00 | 3.02 |
886 | 969 | 0.833287 | TGGATCCAGCTAGCACCTTC | 59.167 | 55.000 | 18.83 | 8.25 | 0.00 | 3.46 |
887 | 970 | 0.543749 | GTGGATCCAGCTAGCACCTT | 59.456 | 55.000 | 16.81 | 0.00 | 0.00 | 3.50 |
888 | 971 | 1.341156 | GGTGGATCCAGCTAGCACCT | 61.341 | 60.000 | 32.11 | 0.00 | 40.83 | 4.00 |
952 | 1038 | 2.368011 | CGTCTCCCCTTCTTCCCCC | 61.368 | 68.421 | 0.00 | 0.00 | 0.00 | 5.40 |
953 | 1039 | 2.368011 | CCGTCTCCCCTTCTTCCCC | 61.368 | 68.421 | 0.00 | 0.00 | 0.00 | 4.81 |
955 | 1041 | 1.612739 | ACCCGTCTCCCCTTCTTCC | 60.613 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
956 | 1042 | 1.192803 | ACACCCGTCTCCCCTTCTTC | 61.193 | 60.000 | 0.00 | 0.00 | 0.00 | 2.87 |
957 | 1043 | 1.152096 | ACACCCGTCTCCCCTTCTT | 60.152 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
958 | 1044 | 1.913762 | CACACCCGTCTCCCCTTCT | 60.914 | 63.158 | 0.00 | 0.00 | 0.00 | 2.85 |
959 | 1045 | 2.663196 | CACACCCGTCTCCCCTTC | 59.337 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
960 | 1046 | 2.928396 | CCACACCCGTCTCCCCTT | 60.928 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
1172 | 1258 | 3.461773 | CCTCCTGGATGTCGCGGT | 61.462 | 66.667 | 6.13 | 0.00 | 34.57 | 5.68 |
1177 | 1263 | 1.677052 | GACGTACTCCTCCTGGATGTC | 59.323 | 57.143 | 0.00 | 0.00 | 42.29 | 3.06 |
1178 | 1264 | 1.765230 | GACGTACTCCTCCTGGATGT | 58.235 | 55.000 | 0.00 | 0.00 | 42.29 | 3.06 |
1181 | 1267 | 0.107800 | CTCGACGTACTCCTCCTGGA | 60.108 | 60.000 | 0.00 | 0.00 | 40.69 | 3.86 |
1266 | 1352 | 0.388134 | CGTCCGTCCACAGGTACTTG | 60.388 | 60.000 | 2.98 | 2.98 | 34.60 | 3.16 |
1287 | 1373 | 1.330655 | ACTCCCCCTCGTACATGCAG | 61.331 | 60.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1374 | 1460 | 1.089920 | CCATGAAGCCGTCCTTGAAG | 58.910 | 55.000 | 0.00 | 0.00 | 32.78 | 3.02 |
1440 | 1526 | 1.077429 | GAGGTTCATGGACCAGGCC | 60.077 | 63.158 | 25.54 | 7.46 | 42.35 | 5.19 |
1468 | 1554 | 1.517257 | CGTAGCTCTTCCTGCCGTG | 60.517 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
1824 | 1916 | 4.351054 | AAGCCCGGCAACTCCCTG | 62.351 | 66.667 | 13.15 | 0.00 | 0.00 | 4.45 |
2151 | 2252 | 2.045536 | GTCTCCCCCTGCTGCTTG | 60.046 | 66.667 | 0.00 | 0.00 | 0.00 | 4.01 |
2209 | 2312 | 2.108566 | CCTGATCCCGAGCTGCAG | 59.891 | 66.667 | 10.11 | 10.11 | 0.00 | 4.41 |
2239 | 2342 | 1.133167 | TCGCTAATGGAGGGAGATGGA | 60.133 | 52.381 | 0.00 | 0.00 | 41.94 | 3.41 |
2267 | 2370 | 3.448301 | CCAAGGCTCCAAAATCTGCATAA | 59.552 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
2285 | 2398 | 4.381292 | GGTTGATCAAATTCCAGAGCCAAG | 60.381 | 45.833 | 10.35 | 0.00 | 0.00 | 3.61 |
2292 | 2405 | 3.609853 | TCTCCGGTTGATCAAATTCCAG | 58.390 | 45.455 | 10.35 | 0.00 | 0.00 | 3.86 |
2354 | 2467 | 5.131142 | CACTGGTATCCCCTAATTCAGACTT | 59.869 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2373 | 2486 | 0.036952 | CACTGACAGGGTAGCACTGG | 60.037 | 60.000 | 7.51 | 1.49 | 40.23 | 4.00 |
2378 | 2491 | 0.685097 | TTCACCACTGACAGGGTAGC | 59.315 | 55.000 | 13.35 | 0.00 | 35.09 | 3.58 |
2379 | 2492 | 3.703001 | AATTCACCACTGACAGGGTAG | 57.297 | 47.619 | 13.35 | 9.39 | 35.09 | 3.18 |
2402 | 2515 | 5.553123 | TGATTCGAAGCAAACCCTTTAGTA | 58.447 | 37.500 | 14.73 | 0.00 | 0.00 | 1.82 |
2403 | 2516 | 4.394729 | TGATTCGAAGCAAACCCTTTAGT | 58.605 | 39.130 | 14.73 | 0.00 | 0.00 | 2.24 |
2404 | 2517 | 5.335127 | CATGATTCGAAGCAAACCCTTTAG | 58.665 | 41.667 | 21.22 | 0.00 | 0.00 | 1.85 |
2486 | 2602 | 1.535462 | CCACACGGTAGAAAAGCCTTG | 59.465 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
2492 | 2608 | 3.256383 | TCGAGAATCCACACGGTAGAAAA | 59.744 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2493 | 2609 | 2.821378 | TCGAGAATCCACACGGTAGAAA | 59.179 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
2501 | 2617 | 4.033358 | GTCATGTTGATCGAGAATCCACAC | 59.967 | 45.833 | 0.00 | 0.00 | 41.38 | 3.82 |
2513 | 2629 | 4.877823 | TGACTAATGGCTGTCATGTTGATC | 59.122 | 41.667 | 0.00 | 0.00 | 38.15 | 2.92 |
2712 | 2832 | 2.031919 | TCGCAGGAATTGTGCCGT | 59.968 | 55.556 | 4.22 | 0.00 | 37.67 | 5.68 |
2785 | 2905 | 6.947733 | TCATATATGTAGCTTTGAAATGGGGG | 59.052 | 38.462 | 12.42 | 0.00 | 0.00 | 5.40 |
2808 | 2928 | 4.823442 | GGCAGGTACATCATCAATTCATCA | 59.177 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
2809 | 2929 | 5.068636 | AGGCAGGTACATCATCAATTCATC | 58.931 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
2810 | 2930 | 5.057843 | AGGCAGGTACATCATCAATTCAT | 57.942 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2811 | 2931 | 4.508551 | AGGCAGGTACATCATCAATTCA | 57.491 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
2812 | 2932 | 5.008415 | CAGAAGGCAGGTACATCATCAATTC | 59.992 | 44.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2813 | 2933 | 4.885907 | CAGAAGGCAGGTACATCATCAATT | 59.114 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
2814 | 2934 | 4.458397 | CAGAAGGCAGGTACATCATCAAT | 58.542 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2815 | 2935 | 3.370846 | CCAGAAGGCAGGTACATCATCAA | 60.371 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
2816 | 2936 | 2.171237 | CCAGAAGGCAGGTACATCATCA | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2817 | 2937 | 2.171448 | ACCAGAAGGCAGGTACATCATC | 59.829 | 50.000 | 0.00 | 0.00 | 39.06 | 2.92 |
2826 | 2946 | 3.474600 | CATAATGAGACCAGAAGGCAGG | 58.525 | 50.000 | 0.00 | 0.00 | 39.06 | 4.85 |
2829 | 2949 | 2.877168 | CAGCATAATGAGACCAGAAGGC | 59.123 | 50.000 | 0.00 | 0.00 | 39.06 | 4.35 |
2839 | 2959 | 7.683437 | ATGGTATGTTGATCAGCATAATGAG | 57.317 | 36.000 | 27.52 | 0.00 | 36.50 | 2.90 |
2981 | 3108 | 2.231478 | TGTCAGGTAGAAGAAGCTTCCG | 59.769 | 50.000 | 22.81 | 4.34 | 31.34 | 4.30 |
3067 | 3194 | 1.138069 | GAAAGCCTAGAGACAGAGGGC | 59.862 | 57.143 | 0.00 | 0.00 | 42.74 | 5.19 |
3202 | 3334 | 5.776173 | ATTTGGTCACTAGAGTATCCTCG | 57.224 | 43.478 | 0.00 | 0.00 | 42.86 | 4.63 |
3229 | 3361 | 4.201783 | GCTAACTTAACACAATGTAGGCCG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 6.13 |
3232 | 3364 | 5.163754 | GCCAGCTAACTTAACACAATGTAGG | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3450 | 3594 | 2.669391 | GCCTTTCAGATCAAAACGCCTG | 60.669 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3489 | 3633 | 2.288666 | TCAGTTTGTGGCTTGTCAGTC | 58.711 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
3647 | 3791 | 8.706492 | CATTATGGACTAAATGCACAAATTGT | 57.294 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
3824 | 3968 | 8.531622 | TTGATAAGTTTGCAAATGTGTTATGG | 57.468 | 30.769 | 16.21 | 0.00 | 0.00 | 2.74 |
3826 | 3970 | 9.762933 | ACTTTGATAAGTTTGCAAATGTGTTAT | 57.237 | 25.926 | 16.21 | 14.85 | 41.85 | 1.89 |
3852 | 3996 | 8.927675 | AAGGTATAAACAACCAACTGATTGTA | 57.072 | 30.769 | 0.00 | 0.00 | 38.08 | 2.41 |
3898 | 4042 | 4.956075 | GGTATCATTGTCCATGGAACCTTT | 59.044 | 41.667 | 18.20 | 2.80 | 36.15 | 3.11 |
3905 | 4049 | 4.015764 | TGTGTTGGTATCATTGTCCATGG | 58.984 | 43.478 | 4.97 | 4.97 | 33.07 | 3.66 |
3960 | 4104 | 6.845758 | TTTGGATCAGCAAGAAATTGATCT | 57.154 | 33.333 | 11.96 | 0.00 | 36.55 | 2.75 |
4069 | 4213 | 9.593134 | GATCAAACACAGAGATATACAGAAGTT | 57.407 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
4086 | 4230 | 5.607119 | ATTACGACACAAGGATCAAACAC | 57.393 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
4103 | 4247 | 6.518493 | TGAAGCCTACCTAATACCAATTACG | 58.482 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4176 | 4320 | 3.689649 | CCGGCATATATAAGCAAAGGGAC | 59.310 | 47.826 | 11.74 | 0.00 | 0.00 | 4.46 |
4278 | 4423 | 2.760634 | TTGCTCACCACATACACGAT | 57.239 | 45.000 | 0.00 | 0.00 | 0.00 | 3.73 |
4286 | 4431 | 3.698539 | TCAAGTTTTGATTGCTCACCACA | 59.301 | 39.130 | 0.00 | 0.00 | 34.08 | 4.17 |
4522 | 4680 | 5.762711 | TCAGCTAGTTGACAGCACATAAAAA | 59.237 | 36.000 | 5.01 | 0.00 | 41.66 | 1.94 |
4567 | 4738 | 6.292865 | GCCCTGTCTTGAAATTTTAGTTTTGC | 60.293 | 38.462 | 0.00 | 0.00 | 0.00 | 3.68 |
4575 | 4746 | 5.385198 | TCTGTAGCCCTGTCTTGAAATTTT | 58.615 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
4661 | 4835 | 7.145932 | AGACAGCCTGTTTATTCACAAATAC | 57.854 | 36.000 | 0.00 | 0.00 | 0.00 | 1.89 |
4680 | 4854 | 4.994852 | TGTCCCGAGTTTGATTTTAGACAG | 59.005 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
5015 | 5190 | 5.860716 | GCTTTCTTCCATTGACATCTCAAAC | 59.139 | 40.000 | 0.00 | 0.00 | 39.90 | 2.93 |
5016 | 5191 | 5.771666 | AGCTTTCTTCCATTGACATCTCAAA | 59.228 | 36.000 | 0.00 | 0.00 | 39.90 | 2.69 |
5034 | 5209 | 0.604780 | TGTGCAGAGGCTGAGCTTTC | 60.605 | 55.000 | 3.72 | 2.74 | 41.91 | 2.62 |
5035 | 5210 | 0.605860 | CTGTGCAGAGGCTGAGCTTT | 60.606 | 55.000 | 3.72 | 0.00 | 41.91 | 3.51 |
5036 | 5211 | 1.003597 | CTGTGCAGAGGCTGAGCTT | 60.004 | 57.895 | 3.72 | 0.00 | 41.91 | 3.74 |
5107 | 5282 | 1.849976 | GCACTGAAGCTGCACTCACC | 61.850 | 60.000 | 1.02 | 0.00 | 34.56 | 4.02 |
5115 | 5290 | 0.240411 | GAAGGCTTGCACTGAAGCTG | 59.760 | 55.000 | 3.46 | 0.00 | 46.43 | 4.24 |
5116 | 5291 | 0.110104 | AGAAGGCTTGCACTGAAGCT | 59.890 | 50.000 | 3.46 | 0.00 | 46.43 | 3.74 |
5124 | 5299 | 1.751733 | GCCATATCCAGAAGGCTTGCA | 60.752 | 52.381 | 3.46 | 0.00 | 43.70 | 4.08 |
5132 | 5307 | 2.923121 | GCAACTCTGCCATATCCAGAA | 58.077 | 47.619 | 4.63 | 0.00 | 43.26 | 3.02 |
5144 | 5319 | 1.471684 | GCCATTTCTGGAGCAACTCTG | 59.528 | 52.381 | 0.00 | 0.00 | 46.37 | 3.35 |
5206 | 5381 | 6.055588 | GTGAGCCCTATGTGTTGTATGTATT | 58.944 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
5217 | 5395 | 5.371526 | ACAAATATCAGTGAGCCCTATGTG | 58.628 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
5275 | 5453 | 7.436673 | CACCTCTCCTATCTTTAACTTGAATCG | 59.563 | 40.741 | 0.00 | 0.00 | 0.00 | 3.34 |
5299 | 5479 | 1.440353 | CTTGCGCGCTTGGTTACAC | 60.440 | 57.895 | 33.29 | 0.00 | 0.00 | 2.90 |
5322 | 5502 | 3.418047 | AGAAACATTTACAACTCCCGGG | 58.582 | 45.455 | 16.85 | 16.85 | 0.00 | 5.73 |
5348 | 5528 | 4.387026 | ACCCTCATCATCAGGTGAAAAA | 57.613 | 40.909 | 0.00 | 0.00 | 40.97 | 1.94 |
5363 | 5543 | 0.692476 | AACACATGCTGCTACCCTCA | 59.308 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5365 | 5545 | 1.210478 | CCTAACACATGCTGCTACCCT | 59.790 | 52.381 | 0.00 | 0.00 | 0.00 | 4.34 |
5366 | 5546 | 1.065418 | ACCTAACACATGCTGCTACCC | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
5367 | 5547 | 2.403252 | ACCTAACACATGCTGCTACC | 57.597 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5414 | 5595 | 2.078849 | TGTCCACAAGCGTAGTCATG | 57.921 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
5417 | 5598 | 3.226346 | TGTATGTCCACAAGCGTAGTC | 57.774 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
5418 | 5599 | 3.521560 | CATGTATGTCCACAAGCGTAGT | 58.478 | 45.455 | 0.00 | 0.00 | 30.84 | 2.73 |
5419 | 5600 | 2.285220 | GCATGTATGTCCACAAGCGTAG | 59.715 | 50.000 | 0.00 | 0.00 | 33.96 | 3.51 |
5451 | 5634 | 5.048224 | CAGACAGAAGAAATCCAAGCATGTT | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
5475 | 5658 | 4.295051 | ACGGAAAACAATGTACAATGTGC | 58.705 | 39.130 | 17.07 | 9.67 | 0.00 | 4.57 |
5476 | 5659 | 5.624900 | CAGACGGAAAACAATGTACAATGTG | 59.375 | 40.000 | 17.07 | 9.77 | 0.00 | 3.21 |
5498 | 5681 | 3.136123 | CGCAATGCCAGGTCCCAG | 61.136 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
5515 | 5698 | 2.295909 | CACTACTGCTCTCTCTATGCCC | 59.704 | 54.545 | 0.00 | 0.00 | 0.00 | 5.36 |
5516 | 5699 | 3.218453 | TCACTACTGCTCTCTCTATGCC | 58.782 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5518 | 5701 | 4.321156 | GGCATCACTACTGCTCTCTCTATG | 60.321 | 50.000 | 0.00 | 0.00 | 39.60 | 2.23 |
5519 | 5702 | 3.826157 | GGCATCACTACTGCTCTCTCTAT | 59.174 | 47.826 | 0.00 | 0.00 | 39.60 | 1.98 |
5520 | 5703 | 3.117701 | AGGCATCACTACTGCTCTCTCTA | 60.118 | 47.826 | 0.00 | 0.00 | 39.60 | 2.43 |
5521 | 5704 | 2.031120 | GGCATCACTACTGCTCTCTCT | 58.969 | 52.381 | 0.00 | 0.00 | 39.60 | 3.10 |
5522 | 5705 | 2.031120 | AGGCATCACTACTGCTCTCTC | 58.969 | 52.381 | 0.00 | 0.00 | 39.60 | 3.20 |
5523 | 5706 | 2.031120 | GAGGCATCACTACTGCTCTCT | 58.969 | 52.381 | 0.00 | 0.00 | 39.60 | 3.10 |
5524 | 5707 | 1.753649 | TGAGGCATCACTACTGCTCTC | 59.246 | 52.381 | 0.00 | 0.00 | 39.60 | 3.20 |
5530 | 5713 | 4.357918 | ACAAAACTGAGGCATCACTACT | 57.642 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
5554 | 5737 | 0.744414 | ACACGATCATTTCAGCCCGG | 60.744 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
5556 | 5739 | 2.029838 | AGACACGATCATTTCAGCCC | 57.970 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
5557 | 5740 | 2.096496 | CCAAGACACGATCATTTCAGCC | 59.904 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
5558 | 5741 | 2.096496 | CCCAAGACACGATCATTTCAGC | 59.904 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5559 | 5742 | 2.096496 | GCCCAAGACACGATCATTTCAG | 59.904 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5561 | 5744 | 2.083774 | TGCCCAAGACACGATCATTTC | 58.916 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
5562 | 5745 | 2.198827 | TGCCCAAGACACGATCATTT | 57.801 | 45.000 | 0.00 | 0.00 | 0.00 | 2.32 |
5637 | 5827 | 1.821753 | CCACTACTGAGGTGAGGTGAG | 59.178 | 57.143 | 0.00 | 0.00 | 36.89 | 3.51 |
5639 | 5829 | 0.247736 | GCCACTACTGAGGTGAGGTG | 59.752 | 60.000 | 0.00 | 0.00 | 36.89 | 4.00 |
5640 | 5830 | 0.178932 | TGCCACTACTGAGGTGAGGT | 60.179 | 55.000 | 0.00 | 0.00 | 36.89 | 3.85 |
5641 | 5831 | 0.534412 | CTGCCACTACTGAGGTGAGG | 59.466 | 60.000 | 0.00 | 0.00 | 36.89 | 3.86 |
5642 | 5832 | 0.108424 | GCTGCCACTACTGAGGTGAG | 60.108 | 60.000 | 0.00 | 0.00 | 36.89 | 3.51 |
5643 | 5833 | 0.542938 | AGCTGCCACTACTGAGGTGA | 60.543 | 55.000 | 0.00 | 0.00 | 36.89 | 4.02 |
5644 | 5834 | 0.390866 | CAGCTGCCACTACTGAGGTG | 60.391 | 60.000 | 0.00 | 0.00 | 33.10 | 4.00 |
5645 | 5835 | 0.542938 | TCAGCTGCCACTACTGAGGT | 60.543 | 55.000 | 9.47 | 0.00 | 35.58 | 3.85 |
5646 | 5836 | 2.280835 | TCAGCTGCCACTACTGAGG | 58.719 | 57.895 | 9.47 | 0.00 | 35.58 | 3.86 |
5648 | 5838 | 1.892819 | GCCTCAGCTGCCACTACTGA | 61.893 | 60.000 | 9.47 | 0.00 | 38.09 | 3.41 |
5649 | 5839 | 1.449246 | GCCTCAGCTGCCACTACTG | 60.449 | 63.158 | 9.47 | 0.00 | 35.50 | 2.74 |
5650 | 5840 | 1.270414 | ATGCCTCAGCTGCCACTACT | 61.270 | 55.000 | 9.47 | 0.00 | 40.80 | 2.57 |
5651 | 5841 | 0.813210 | GATGCCTCAGCTGCCACTAC | 60.813 | 60.000 | 9.47 | 0.00 | 40.80 | 2.73 |
5652 | 5842 | 1.266867 | TGATGCCTCAGCTGCCACTA | 61.267 | 55.000 | 9.47 | 0.00 | 40.80 | 2.74 |
5726 | 5916 | 1.059942 | CAATTTCCCGCGACTTTTGC | 58.940 | 50.000 | 8.23 | 0.00 | 0.00 | 3.68 |
5737 | 5927 | 4.000325 | GCAAACATTACACCCAATTTCCC | 59.000 | 43.478 | 0.00 | 0.00 | 0.00 | 3.97 |
5799 | 5989 | 0.952984 | GCTAGCCGATGAATCTGCCC | 60.953 | 60.000 | 2.29 | 0.00 | 37.70 | 5.36 |
5801 | 5991 | 1.876322 | AAGCTAGCCGATGAATCTGC | 58.124 | 50.000 | 12.13 | 0.00 | 37.30 | 4.26 |
5820 | 6010 | 1.414919 | ACTCGAACAAGCACCAACCTA | 59.585 | 47.619 | 0.00 | 0.00 | 0.00 | 3.08 |
5821 | 6011 | 0.180406 | ACTCGAACAAGCACCAACCT | 59.820 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
5822 | 6012 | 1.021968 | AACTCGAACAAGCACCAACC | 58.978 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
5823 | 6013 | 2.844122 | AAACTCGAACAAGCACCAAC | 57.156 | 45.000 | 0.00 | 0.00 | 0.00 | 3.77 |
5824 | 6014 | 3.065648 | GGTTAAACTCGAACAAGCACCAA | 59.934 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
5825 | 6015 | 2.614983 | GGTTAAACTCGAACAAGCACCA | 59.385 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
5829 | 6019 | 3.808174 | AGTCAGGTTAAACTCGAACAAGC | 59.192 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
5831 | 6021 | 5.013568 | TCAGTCAGGTTAAACTCGAACAA | 57.986 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
5836 | 6026 | 6.102663 | ATCTGATTCAGTCAGGTTAAACTCG | 58.897 | 40.000 | 13.23 | 0.00 | 46.20 | 4.18 |
5848 | 6038 | 9.334947 | TCCAATTTAGATTGATCTGATTCAGTC | 57.665 | 33.333 | 13.23 | 10.45 | 44.37 | 3.51 |
5849 | 6039 | 9.863650 | ATCCAATTTAGATTGATCTGATTCAGT | 57.136 | 29.630 | 13.23 | 1.42 | 44.37 | 3.41 |
5851 | 6041 | 8.573885 | GCATCCAATTTAGATTGATCTGATTCA | 58.426 | 33.333 | 7.53 | 0.00 | 44.37 | 2.57 |
5852 | 6042 | 8.573885 | TGCATCCAATTTAGATTGATCTGATTC | 58.426 | 33.333 | 7.53 | 0.00 | 44.37 | 2.52 |
5867 | 6057 | 6.721318 | TCCTTCTAGTTAGTGCATCCAATTT | 58.279 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5877 | 6067 | 5.297547 | TGTTGCAGTTCCTTCTAGTTAGTG | 58.702 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
5878 | 6068 | 5.070580 | ACTGTTGCAGTTCCTTCTAGTTAGT | 59.929 | 40.000 | 0.00 | 0.00 | 42.59 | 2.24 |
5903 | 6093 | 8.969260 | ATACATGTGATGTTGTTATCAGACAT | 57.031 | 30.769 | 9.11 | 0.00 | 41.63 | 3.06 |
5905 | 6095 | 7.495606 | TGGATACATGTGATGTTGTTATCAGAC | 59.504 | 37.037 | 9.11 | 0.00 | 46.17 | 3.51 |
5927 | 6117 | 7.239143 | TCCTGGATCTGATTTAGATTGATGGAT | 59.761 | 37.037 | 0.00 | 0.00 | 46.12 | 3.41 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.