Multiple sequence alignment - TraesCS2A01G129800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G129800 chr2A 100.000 3174 0 0 1 3174 77743309 77746482 0.000000e+00 5862.0
1 TraesCS2A01G129800 chr2A 92.361 144 8 2 2273 2415 84977630 84977771 5.370000e-48 202.0
2 TraesCS2A01G129800 chr2A 90.789 152 10 2 2273 2422 30698269 30698120 1.930000e-47 200.0
3 TraesCS2A01G129800 chr2B 92.894 1745 79 13 511 2232 118679056 118680778 0.000000e+00 2494.0
4 TraesCS2A01G129800 chr2B 93.839 422 22 4 2752 3171 118681244 118681663 1.610000e-177 632.0
5 TraesCS2A01G129800 chr2B 84.615 364 39 14 2391 2749 118680851 118681202 2.340000e-91 346.0
6 TraesCS2A01G129800 chr2D 92.973 1722 68 12 507 2198 76882136 76883834 0.000000e+00 2460.0
7 TraesCS2A01G129800 chr2D 88.961 462 40 4 1 462 76881335 76881785 7.690000e-156 560.0
8 TraesCS2A01G129800 chr2D 87.172 343 41 3 2834 3174 76887845 76888186 1.380000e-103 387.0
9 TraesCS2A01G129800 chr2D 89.627 241 16 9 2415 2652 76883869 76884103 6.660000e-77 298.0
10 TraesCS2A01G129800 chr4D 86.997 323 42 0 1 323 446103720 446103398 6.470000e-97 364.0
11 TraesCS2A01G129800 chr4D 91.045 67 6 0 440 506 446103199 446103133 1.210000e-14 91.6
12 TraesCS2A01G129800 chr4D 87.719 57 6 1 75 131 107713490 107713435 7.350000e-07 65.8
13 TraesCS2A01G129800 chr1B 81.124 498 56 18 2 462 662035389 662034893 6.470000e-97 364.0
14 TraesCS2A01G129800 chr5B 86.997 323 39 1 1 323 556796309 556796628 8.370000e-96 361.0
15 TraesCS2A01G129800 chr7A 92.000 150 8 3 2273 2420 722869339 722869192 1.150000e-49 207.0
16 TraesCS2A01G129800 chr7A 92.958 142 9 1 2273 2413 151325271 151325412 4.150000e-49 206.0
17 TraesCS2A01G129800 chr7A 90.132 152 11 3 2273 2423 174912476 174912328 8.980000e-46 195.0
18 TraesCS2A01G129800 chr3A 91.946 149 9 2 2273 2420 576278361 576278507 4.150000e-49 206.0
19 TraesCS2A01G129800 chr3A 91.724 145 11 1 2273 2416 691900658 691900514 1.930000e-47 200.0
20 TraesCS2A01G129800 chr5A 92.414 145 8 2 2273 2416 609286175 609286033 1.490000e-48 204.0
21 TraesCS2A01G129800 chr4A 90.604 149 13 1 2273 2421 376729195 376729342 2.500000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G129800 chr2A 77743309 77746482 3173 False 5862.000000 5862 100.000000 1 3174 1 chr2A.!!$F1 3173
1 TraesCS2A01G129800 chr2B 118679056 118681663 2607 False 1157.333333 2494 90.449333 511 3171 3 chr2B.!!$F1 2660
2 TraesCS2A01G129800 chr2D 76881335 76888186 6851 False 926.250000 2460 89.683250 1 3174 4 chr2D.!!$F1 3173
3 TraesCS2A01G129800 chr4D 446103133 446103720 587 True 227.800000 364 89.021000 1 506 2 chr4D.!!$R2 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.322456 CTTTGGAGACCATCGGCCAA 60.322 55.0 2.24 0.0 35.17 4.52 F
213 214 0.894141 CCATCGGCCAAAAACCATGA 59.106 50.0 2.24 0.0 0.00 3.07 F
1107 1489 0.955919 CTTGCCGGGTTCAAGTCTCC 60.956 60.0 2.18 0.0 36.93 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 2340 0.037326 TCATCTCCGCGAAGTGCTTT 60.037 50.0 8.23 0.0 43.27 3.51 R
1999 2388 0.450583 TCGTCAGCATGTCCTCGTAC 59.549 55.0 0.00 0.0 37.40 3.67 R
2682 4484 0.041663 CTGTGTACGTGGTTTTGCGG 60.042 55.0 0.00 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 6.296026 ACAGCCGTCATTATACAACCATATT 58.704 36.000 0.00 0.00 0.00 1.28
114 115 7.168302 CCATATTCTCTACGTCAAGTCATTGTC 59.832 40.741 0.00 0.00 37.68 3.18
132 133 6.604396 TCATTGTCCATAAATTGCATCTCACT 59.396 34.615 0.00 0.00 0.00 3.41
142 143 2.750814 TGCATCTCACTGATACTCCCA 58.249 47.619 0.00 0.00 33.36 4.37
153 154 1.006639 GATACTCCCAAAGGCCCCAAA 59.993 52.381 0.00 0.00 0.00 3.28
162 163 2.435437 CAAAGGCCCCAAATGGATTAGG 59.565 50.000 0.00 0.00 37.39 2.69
204 205 0.322456 CTTTGGAGACCATCGGCCAA 60.322 55.000 2.24 0.00 35.17 4.52
213 214 0.894141 CCATCGGCCAAAAACCATGA 59.106 50.000 2.24 0.00 0.00 3.07
244 245 2.556287 GCCGCAGCTGTTGTACAC 59.444 61.111 16.64 0.00 35.50 2.90
258 259 1.064240 TGTACACGAGGAGGCCAGATA 60.064 52.381 5.01 0.00 0.00 1.98
267 268 3.059097 AGGAGGCCAGATATGGTCATTT 58.941 45.455 14.50 0.00 35.66 2.32
270 271 2.108952 AGGCCAGATATGGTCATTTCCC 59.891 50.000 14.50 1.09 35.66 3.97
271 272 2.158475 GGCCAGATATGGTCATTTCCCA 60.158 50.000 5.99 0.00 36.16 4.37
272 273 2.887152 GCCAGATATGGTCATTTCCCAC 59.113 50.000 8.44 0.00 34.07 4.61
273 274 3.688126 GCCAGATATGGTCATTTCCCACA 60.688 47.826 8.44 0.00 34.07 4.17
274 275 3.885297 CCAGATATGGTCATTTCCCACAC 59.115 47.826 0.00 0.00 34.07 3.82
275 276 3.885297 CAGATATGGTCATTTCCCACACC 59.115 47.826 0.00 0.00 34.07 4.16
276 277 3.788142 AGATATGGTCATTTCCCACACCT 59.212 43.478 0.00 0.00 34.07 4.00
277 278 4.975147 AGATATGGTCATTTCCCACACCTA 59.025 41.667 0.00 0.00 34.07 3.08
297 306 2.115910 CACCATGCCACACCCACT 59.884 61.111 0.00 0.00 0.00 4.00
314 323 2.933287 TCCTCCATGGGCCAACGT 60.933 61.111 11.89 0.00 36.20 3.99
318 327 3.301554 CCATGGGCCAACGTGCAA 61.302 61.111 11.89 0.00 0.00 4.08
319 328 2.049248 CATGGGCCAACGTGCAAC 60.049 61.111 11.89 0.00 0.00 4.17
354 398 3.311110 GACCCGGTGTGGAGCAGA 61.311 66.667 0.00 0.00 42.00 4.26
539 895 3.552890 GGGTGACAGGTTTGCAGAATTTC 60.553 47.826 0.00 0.00 0.00 2.17
545 901 6.479660 TGACAGGTTTGCAGAATTTCATTTTC 59.520 34.615 0.00 0.00 0.00 2.29
560 916 2.535934 TTTTCGCATATCGTGGCAAC 57.464 45.000 0.00 0.00 39.67 4.17
604 980 7.492344 TGAAAAGAAAAGAAATGCAGAAGGAAC 59.508 33.333 0.00 0.00 0.00 3.62
637 1013 2.229784 GGAACTTTCTGTTGCAGGATGG 59.770 50.000 0.00 0.00 44.83 3.51
660 1036 5.627780 GGTAATGGAACTTTGTTAAAGCGTG 59.372 40.000 1.45 0.00 42.27 5.34
687 1063 6.966435 ATTGGCAAAACAATAAATCGAAGG 57.034 33.333 3.01 0.00 39.18 3.46
714 1090 1.347378 TGTAGATCTGCTGGTGTTGCA 59.653 47.619 12.30 0.00 38.81 4.08
716 1092 1.985473 AGATCTGCTGGTGTTGCAAA 58.015 45.000 0.00 0.00 40.13 3.68
756 1132 3.992427 AGTTTCGTAAGGAAGCTTAACGG 59.008 43.478 17.63 0.88 42.76 4.44
757 1133 2.660189 TCGTAAGGAAGCTTAACGGG 57.340 50.000 17.63 1.33 38.47 5.28
803 1179 1.269831 GGAGTGACGACAACTGAAGCT 60.270 52.381 0.00 0.00 0.00 3.74
817 1193 5.386958 ACTGAAGCTCATAACGTTACTGA 57.613 39.130 10.81 13.64 0.00 3.41
818 1194 5.779922 ACTGAAGCTCATAACGTTACTGAA 58.220 37.500 10.81 0.00 0.00 3.02
819 1195 5.864474 ACTGAAGCTCATAACGTTACTGAAG 59.136 40.000 10.81 10.97 0.00 3.02
820 1196 6.020971 TGAAGCTCATAACGTTACTGAAGA 57.979 37.500 10.81 3.49 0.00 2.87
821 1197 6.452242 TGAAGCTCATAACGTTACTGAAGAA 58.548 36.000 10.81 0.00 0.00 2.52
822 1198 6.365247 TGAAGCTCATAACGTTACTGAAGAAC 59.635 38.462 10.81 8.23 0.00 3.01
823 1199 5.779922 AGCTCATAACGTTACTGAAGAACA 58.220 37.500 10.81 0.00 0.00 3.18
881 1257 8.664211 AATCCACTTTATTCCGACTCTTTATC 57.336 34.615 0.00 0.00 0.00 1.75
882 1258 6.579865 TCCACTTTATTCCGACTCTTTATCC 58.420 40.000 0.00 0.00 0.00 2.59
883 1259 5.462398 CCACTTTATTCCGACTCTTTATCCG 59.538 44.000 0.00 0.00 0.00 4.18
884 1260 6.040878 CACTTTATTCCGACTCTTTATCCGT 58.959 40.000 0.00 0.00 0.00 4.69
885 1261 6.198591 CACTTTATTCCGACTCTTTATCCGTC 59.801 42.308 0.00 0.00 0.00 4.79
914 1293 5.128335 CCCACCCTATATAATTCCTCCGTAC 59.872 48.000 0.00 0.00 0.00 3.67
925 1304 3.680642 TCCTCCGTACTTAATTCGTCG 57.319 47.619 0.00 0.00 0.00 5.12
955 1334 2.115911 AGCGGCTCGAAGACGATCT 61.116 57.895 13.26 0.51 45.30 2.75
973 1352 2.679132 CTATCGACCTTCCGTGGCCG 62.679 65.000 0.00 0.00 34.26 6.13
1100 1479 3.551496 CTCCTGCTTGCCGGGTTCA 62.551 63.158 2.18 0.00 41.11 3.18
1107 1489 0.955919 CTTGCCGGGTTCAAGTCTCC 60.956 60.000 2.18 0.00 36.93 3.71
1154 1543 1.156645 GCTGACATGGTGATCTCGGC 61.157 60.000 0.00 0.00 0.00 5.54
1544 1933 4.742201 CCGTGCTGGTGGAGGTCG 62.742 72.222 0.00 0.00 0.00 4.79
1918 2307 2.811317 CAGTTCGCCAGGACGCTC 60.811 66.667 0.00 0.00 0.00 5.03
1920 2309 2.811317 GTTCGCCAGGACGCTCAG 60.811 66.667 0.00 0.00 0.00 3.35
2176 2565 0.037790 GCTGCGAGGAAGAGTGAAGT 60.038 55.000 0.00 0.00 0.00 3.01
2177 2566 1.202582 GCTGCGAGGAAGAGTGAAGTA 59.797 52.381 0.00 0.00 0.00 2.24
2189 2578 3.007398 AGAGTGAAGTAGCAAACCTGGAG 59.993 47.826 0.00 0.00 0.00 3.86
2192 2581 0.321653 AAGTAGCAAACCTGGAGCGG 60.322 55.000 0.00 0.00 0.00 5.52
2219 2608 2.342650 ATGGTTGTGGGATGCGCAC 61.343 57.895 14.90 6.86 45.53 5.34
2226 2615 2.324330 TGGGATGCGCACGAAACAG 61.324 57.895 14.90 0.00 0.00 3.16
2232 2621 0.512518 TGCGCACGAAACAGAATGAG 59.487 50.000 5.66 0.00 39.69 2.90
2233 2622 0.790207 GCGCACGAAACAGAATGAGA 59.210 50.000 0.30 0.00 39.69 3.27
2234 2623 1.201855 GCGCACGAAACAGAATGAGAG 60.202 52.381 0.30 0.00 39.69 3.20
2235 2624 2.328473 CGCACGAAACAGAATGAGAGA 58.672 47.619 0.00 0.00 39.69 3.10
2236 2625 2.091277 CGCACGAAACAGAATGAGAGAC 59.909 50.000 0.00 0.00 39.69 3.36
2237 2626 3.321497 GCACGAAACAGAATGAGAGACT 58.679 45.455 0.00 0.00 39.69 3.24
2238 2627 4.486090 GCACGAAACAGAATGAGAGACTA 58.514 43.478 0.00 0.00 39.69 2.59
2239 2628 4.560819 GCACGAAACAGAATGAGAGACTAG 59.439 45.833 0.00 0.00 39.69 2.57
2240 2629 5.704888 CACGAAACAGAATGAGAGACTAGT 58.295 41.667 0.00 0.00 39.69 2.57
2242 2631 5.473846 ACGAAACAGAATGAGAGACTAGTCA 59.526 40.000 24.44 5.02 39.69 3.41
2244 2633 7.337184 ACGAAACAGAATGAGAGACTAGTCATA 59.663 37.037 24.44 8.07 39.69 2.15
2245 2634 7.642194 CGAAACAGAATGAGAGACTAGTCATAC 59.358 40.741 24.44 14.56 39.69 2.39
2246 2635 6.952773 ACAGAATGAGAGACTAGTCATACC 57.047 41.667 24.44 10.85 39.69 2.73
2247 2636 6.427441 ACAGAATGAGAGACTAGTCATACCA 58.573 40.000 24.44 15.61 39.69 3.25
2258 2647 0.179145 GTCATACCACACCTCCGACG 60.179 60.000 0.00 0.00 0.00 5.12
2263 2652 2.989824 CACACCTCCGACGGGACT 60.990 66.667 15.25 0.00 37.43 3.85
2278 2667 3.821421 GGGACTCCGTTGTCTATCAAT 57.179 47.619 5.28 0.00 38.38 2.57
2279 2668 3.458189 GGGACTCCGTTGTCTATCAATG 58.542 50.000 5.28 0.00 41.29 2.82
2280 2669 3.132289 GGGACTCCGTTGTCTATCAATGA 59.868 47.826 5.28 0.00 43.50 2.57
2281 2670 4.382685 GGGACTCCGTTGTCTATCAATGAA 60.383 45.833 5.28 0.00 43.50 2.57
2283 2672 5.817816 GGACTCCGTTGTCTATCAATGAATT 59.182 40.000 5.28 0.00 43.50 2.17
2284 2673 6.018669 GGACTCCGTTGTCTATCAATGAATTC 60.019 42.308 0.00 0.00 43.50 2.17
2286 2675 5.416083 TCCGTTGTCTATCAATGAATTCGT 58.584 37.500 0.04 0.00 43.50 3.85
2287 2676 6.566141 TCCGTTGTCTATCAATGAATTCGTA 58.434 36.000 0.00 0.00 43.50 3.43
2288 2677 7.207383 TCCGTTGTCTATCAATGAATTCGTAT 58.793 34.615 0.00 0.00 43.50 3.06
2289 2678 7.709182 TCCGTTGTCTATCAATGAATTCGTATT 59.291 33.333 0.00 0.00 43.50 1.89
2290 2679 8.004344 CCGTTGTCTATCAATGAATTCGTATTC 58.996 37.037 7.74 7.74 43.50 1.75
2291 2680 7.731729 CGTTGTCTATCAATGAATTCGTATTCG 59.268 37.037 9.79 0.00 43.50 3.34
2292 2681 8.752254 GTTGTCTATCAATGAATTCGTATTCGA 58.248 33.333 9.79 2.59 42.55 3.71
2335 2724 2.748461 TTTTTCCTTCGTCGCAGTTG 57.252 45.000 0.00 0.00 0.00 3.16
2336 2725 0.941542 TTTTCCTTCGTCGCAGTTGG 59.058 50.000 0.00 0.00 0.00 3.77
2337 2726 0.179067 TTTCCTTCGTCGCAGTTGGT 60.179 50.000 0.00 0.00 0.00 3.67
2338 2727 0.599204 TTCCTTCGTCGCAGTTGGTC 60.599 55.000 0.00 0.00 0.00 4.02
2339 2728 1.006102 CCTTCGTCGCAGTTGGTCT 60.006 57.895 0.00 0.00 0.00 3.85
2340 2729 1.009389 CCTTCGTCGCAGTTGGTCTC 61.009 60.000 0.00 0.00 0.00 3.36
2341 2730 1.337817 CTTCGTCGCAGTTGGTCTCG 61.338 60.000 0.00 0.00 0.00 4.04
2342 2731 2.050351 CGTCGCAGTTGGTCTCGT 60.050 61.111 0.00 0.00 0.00 4.18
2343 2732 1.660575 CGTCGCAGTTGGTCTCGTT 60.661 57.895 0.00 0.00 0.00 3.85
2344 2733 1.853319 GTCGCAGTTGGTCTCGTTG 59.147 57.895 0.00 0.00 0.00 4.10
2345 2734 1.300620 TCGCAGTTGGTCTCGTTGG 60.301 57.895 0.00 0.00 0.00 3.77
2346 2735 1.594293 CGCAGTTGGTCTCGTTGGT 60.594 57.895 0.00 0.00 0.00 3.67
2347 2736 1.157870 CGCAGTTGGTCTCGTTGGTT 61.158 55.000 0.00 0.00 0.00 3.67
2348 2737 1.870580 CGCAGTTGGTCTCGTTGGTTA 60.871 52.381 0.00 0.00 0.00 2.85
2349 2738 2.215196 GCAGTTGGTCTCGTTGGTTAA 58.785 47.619 0.00 0.00 0.00 2.01
2350 2739 2.614983 GCAGTTGGTCTCGTTGGTTAAA 59.385 45.455 0.00 0.00 0.00 1.52
2351 2740 3.252458 GCAGTTGGTCTCGTTGGTTAAAT 59.748 43.478 0.00 0.00 0.00 1.40
2352 2741 4.261447 GCAGTTGGTCTCGTTGGTTAAATT 60.261 41.667 0.00 0.00 0.00 1.82
2353 2742 5.735070 GCAGTTGGTCTCGTTGGTTAAATTT 60.735 40.000 0.00 0.00 0.00 1.82
2354 2743 6.513720 GCAGTTGGTCTCGTTGGTTAAATTTA 60.514 38.462 0.00 0.00 0.00 1.40
2355 2744 6.854381 CAGTTGGTCTCGTTGGTTAAATTTAC 59.146 38.462 0.00 0.00 0.00 2.01
2356 2745 5.594724 TGGTCTCGTTGGTTAAATTTACG 57.405 39.130 0.00 0.61 0.00 3.18
2357 2746 4.451774 TGGTCTCGTTGGTTAAATTTACGG 59.548 41.667 9.79 2.88 33.37 4.02
2358 2747 4.452114 GGTCTCGTTGGTTAAATTTACGGT 59.548 41.667 9.79 0.00 33.37 4.83
2359 2748 5.389830 GGTCTCGTTGGTTAAATTTACGGTC 60.390 44.000 9.79 2.84 33.37 4.79
2360 2749 5.177327 GTCTCGTTGGTTAAATTTACGGTCA 59.823 40.000 9.79 0.00 33.37 4.02
2361 2750 5.406175 TCTCGTTGGTTAAATTTACGGTCAG 59.594 40.000 9.79 2.29 33.37 3.51
2362 2751 5.295950 TCGTTGGTTAAATTTACGGTCAGA 58.704 37.500 9.79 0.00 33.37 3.27
2363 2752 5.406175 TCGTTGGTTAAATTTACGGTCAGAG 59.594 40.000 9.79 1.28 33.37 3.35
2364 2753 5.178067 CGTTGGTTAAATTTACGGTCAGAGT 59.822 40.000 0.00 0.00 0.00 3.24
2365 2754 6.293027 CGTTGGTTAAATTTACGGTCAGAGTT 60.293 38.462 0.00 0.00 0.00 3.01
2366 2755 7.095691 CGTTGGTTAAATTTACGGTCAGAGTTA 60.096 37.037 0.00 0.00 0.00 2.24
2367 2756 7.894376 TGGTTAAATTTACGGTCAGAGTTAG 57.106 36.000 0.00 0.00 0.00 2.34
2368 2757 7.669427 TGGTTAAATTTACGGTCAGAGTTAGA 58.331 34.615 0.00 0.00 0.00 2.10
2369 2758 7.599998 TGGTTAAATTTACGGTCAGAGTTAGAC 59.400 37.037 0.00 0.00 35.29 2.59
2375 2764 3.277962 GTCAGAGTTAGACCCCGGA 57.722 57.895 0.73 0.00 0.00 5.14
2376 2765 1.553706 GTCAGAGTTAGACCCCGGAA 58.446 55.000 0.73 0.00 0.00 4.30
2377 2766 1.897802 GTCAGAGTTAGACCCCGGAAA 59.102 52.381 0.73 0.00 0.00 3.13
2378 2767 2.094130 GTCAGAGTTAGACCCCGGAAAG 60.094 54.545 0.73 0.00 0.00 2.62
2379 2768 0.903236 AGAGTTAGACCCCGGAAAGC 59.097 55.000 0.73 0.00 0.00 3.51
2380 2769 0.459759 GAGTTAGACCCCGGAAAGCG 60.460 60.000 0.73 0.00 0.00 4.68
2381 2770 2.104859 GTTAGACCCCGGAAAGCGC 61.105 63.158 0.73 0.00 0.00 5.92
2382 2771 3.652539 TTAGACCCCGGAAAGCGCG 62.653 63.158 0.73 0.00 0.00 6.86
2396 2785 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
2400 2789 1.332375 GCGGGCGCACTATATTTTGAA 59.668 47.619 8.62 0.00 41.49 2.69
2402 2791 3.550030 GCGGGCGCACTATATTTTGAAAT 60.550 43.478 8.62 0.00 41.49 2.17
2403 2792 3.974401 CGGGCGCACTATATTTTGAAATG 59.026 43.478 8.62 0.00 0.00 2.32
2404 2793 4.260990 CGGGCGCACTATATTTTGAAATGA 60.261 41.667 8.62 0.00 0.00 2.57
2563 2952 4.757149 ACTAAATGATATTTCGAGCCTGGC 59.243 41.667 11.65 11.65 0.00 4.85
2571 2960 0.323302 TTCGAGCCTGGCACATACAA 59.677 50.000 22.65 2.26 38.20 2.41
2701 4503 0.041663 CCGCAAAACCACGTACACAG 60.042 55.000 0.00 0.00 0.00 3.66
2702 4504 0.656205 CGCAAAACCACGTACACAGC 60.656 55.000 0.00 0.00 0.00 4.40
2704 4506 1.305201 CAAAACCACGTACACAGCCT 58.695 50.000 0.00 0.00 0.00 4.58
2707 4509 0.685097 AACCACGTACACAGCCTGAT 59.315 50.000 0.00 0.00 0.00 2.90
2723 4525 4.970621 ATGCGGTGATGAGTGCAT 57.029 50.000 0.00 0.00 42.84 3.96
2749 4551 4.323104 GCAGAACAGAAGTAGAAGGGATGT 60.323 45.833 0.00 0.00 0.00 3.06
2815 4657 2.622942 GTGTTGAATGGCTTGGACAAGA 59.377 45.455 15.76 0.00 40.79 3.02
2856 6810 2.095768 CACAAACCATCGAAGATGCGTT 60.096 45.455 4.60 7.51 45.12 4.84
2907 6861 1.747898 CGGTAGGGTGAGAGAGGAGAC 60.748 61.905 0.00 0.00 0.00 3.36
2916 6870 1.288335 GAGAGAGGAGACCCCCTTACA 59.712 57.143 0.00 0.00 36.49 2.41
2931 6885 2.904434 CCTTACACAAGGTAGTGGGAGT 59.096 50.000 0.00 0.00 45.59 3.85
2932 6886 3.306780 CCTTACACAAGGTAGTGGGAGTG 60.307 52.174 0.00 0.00 45.59 3.51
2953 6907 2.225491 GTGGTCACGCAATAACACACAT 59.775 45.455 0.00 0.00 0.00 3.21
2975 6930 4.040047 TCAATCCTGGAAAGATAGCTCCA 58.960 43.478 0.00 0.00 39.47 3.86
3014 6969 1.282875 GTGCGACACCAAGAAAGGC 59.717 57.895 0.00 0.00 0.00 4.35
3041 6996 2.210116 GCCACACTTGACGAGAAAAGA 58.790 47.619 0.00 0.00 0.00 2.52
3090 7045 2.293122 CCTTGGTCTTCATGTCGCAAAA 59.707 45.455 0.00 0.00 0.00 2.44
3092 7047 1.879380 TGGTCTTCATGTCGCAAAAGG 59.121 47.619 0.00 0.00 0.00 3.11
3093 7048 2.151202 GGTCTTCATGTCGCAAAAGGA 58.849 47.619 0.00 0.00 0.00 3.36
3094 7049 2.095718 GGTCTTCATGTCGCAAAAGGAC 60.096 50.000 0.00 0.00 34.99 3.85
3095 7050 1.798223 TCTTCATGTCGCAAAAGGACG 59.202 47.619 0.00 0.00 37.22 4.79
3096 7051 0.237235 TTCATGTCGCAAAAGGACGC 59.763 50.000 0.00 0.00 37.22 5.19
3099 7054 0.665835 ATGTCGCAAAAGGACGCAAA 59.334 45.000 0.00 0.00 37.22 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.244579 GGCGATAACACCTAATTGACGTC 59.755 47.826 9.11 9.11 0.00 4.34
36 37 2.264480 CGGTTGCTGGGATCGTGA 59.736 61.111 0.00 0.00 0.00 4.35
72 73 6.769512 AGAATATGGTTGTATAATGACGGCT 58.230 36.000 0.00 0.00 0.00 5.52
80 81 9.961265 CTTGACGTAGAGAATATGGTTGTATAA 57.039 33.333 0.00 0.00 0.00 0.98
94 95 3.824443 TGGACAATGACTTGACGTAGAGA 59.176 43.478 4.80 0.00 36.20 3.10
114 115 7.094890 GGAGTATCAGTGAGATGCAATTTATGG 60.095 40.741 0.00 0.00 41.29 2.74
132 133 0.551377 TGGGGCCTTTGGGAGTATCA 60.551 55.000 0.84 0.00 36.25 2.15
142 143 2.763039 CCTAATCCATTTGGGGCCTTT 58.237 47.619 0.84 0.00 37.22 3.11
153 154 1.142465 CTGAGTGCAGCCCTAATCCAT 59.858 52.381 0.00 0.00 34.95 3.41
204 205 3.370231 GGCGGGCGTCATGGTTTT 61.370 61.111 0.00 0.00 0.00 2.43
258 259 2.647299 TGTAGGTGTGGGAAATGACCAT 59.353 45.455 0.00 0.00 40.70 3.55
267 268 0.690192 CATGGTGTGTAGGTGTGGGA 59.310 55.000 0.00 0.00 0.00 4.37
270 271 0.250684 TGGCATGGTGTGTAGGTGTG 60.251 55.000 0.00 0.00 0.00 3.82
271 272 0.250727 GTGGCATGGTGTGTAGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
272 273 0.250684 TGTGGCATGGTGTGTAGGTG 60.251 55.000 0.00 0.00 0.00 4.00
273 274 0.250727 GTGTGGCATGGTGTGTAGGT 60.251 55.000 0.00 0.00 0.00 3.08
274 275 0.960364 GGTGTGGCATGGTGTGTAGG 60.960 60.000 0.00 0.00 0.00 3.18
275 276 0.960364 GGGTGTGGCATGGTGTGTAG 60.960 60.000 0.00 0.00 0.00 2.74
276 277 1.074072 GGGTGTGGCATGGTGTGTA 59.926 57.895 0.00 0.00 0.00 2.90
277 278 2.203480 GGGTGTGGCATGGTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
297 306 2.933287 ACGTTGGCCCATGGAGGA 60.933 61.111 15.22 0.00 41.22 3.71
314 323 4.156373 CACAATGGATCTATGTGTGTTGCA 59.844 41.667 17.93 0.00 39.60 4.08
318 327 4.517285 GGTCACAATGGATCTATGTGTGT 58.483 43.478 21.77 10.14 43.72 3.72
319 328 3.879295 GGGTCACAATGGATCTATGTGTG 59.121 47.826 19.12 19.12 43.72 3.82
334 378 3.936203 GCTCCACACCGGGTCACA 61.936 66.667 6.32 0.00 34.36 3.58
354 398 3.083349 TAGGGTGCGGCTGCTCAT 61.083 61.111 20.27 11.19 43.34 2.90
508 864 0.716591 ACCTGTCACCCTCTCCCATA 59.283 55.000 0.00 0.00 0.00 2.74
518 874 3.068024 TGAAATTCTGCAAACCTGTCACC 59.932 43.478 0.00 0.00 0.00 4.02
539 895 2.753989 TGCCACGATATGCGAAAATG 57.246 45.000 0.00 0.00 44.57 2.32
560 916 1.749063 TCAGTACCATACAGAGCACGG 59.251 52.381 0.00 0.00 0.00 4.94
623 999 2.575735 TCCATTACCATCCTGCAACAGA 59.424 45.455 0.00 0.00 32.44 3.41
624 1000 3.003394 TCCATTACCATCCTGCAACAG 57.997 47.619 0.00 0.00 0.00 3.16
626 1002 3.356290 AGTTCCATTACCATCCTGCAAC 58.644 45.455 0.00 0.00 0.00 4.17
635 1011 5.299782 ACGCTTTAACAAAGTTCCATTACCA 59.700 36.000 1.02 0.00 40.64 3.25
637 1013 5.627780 CCACGCTTTAACAAAGTTCCATTAC 59.372 40.000 1.02 0.00 40.64 1.89
660 1036 5.121454 TCGATTTATTGTTTTGCCAATTGCC 59.879 36.000 0.00 0.00 40.16 4.52
687 1063 2.263077 CCAGCAGATCTACAACGTGAC 58.737 52.381 0.00 0.00 0.00 3.67
714 1090 0.878961 GCGTTGGAGACCTCGTGTTT 60.879 55.000 0.00 0.00 0.00 2.83
716 1092 2.338984 GCGTTGGAGACCTCGTGT 59.661 61.111 0.00 0.00 0.00 4.49
717 1093 1.734477 CTGCGTTGGAGACCTCGTG 60.734 63.158 0.00 0.00 0.00 4.35
723 1099 1.774639 TACGAAACTGCGTTGGAGAC 58.225 50.000 0.00 0.00 42.71 3.36
756 1132 3.010420 GAGGGATGTGAACTTGCTTACC 58.990 50.000 0.00 0.00 0.00 2.85
757 1133 3.686726 CAGAGGGATGTGAACTTGCTTAC 59.313 47.826 0.00 0.00 0.00 2.34
803 1179 5.534407 TGCTGTTCTTCAGTAACGTTATGA 58.466 37.500 11.86 12.66 45.23 2.15
817 1193 7.573968 AAAGTATTCTTCACTTGCTGTTCTT 57.426 32.000 0.00 0.00 36.38 2.52
818 1194 7.095607 CGTAAAGTATTCTTCACTTGCTGTTCT 60.096 37.037 0.00 0.00 36.38 3.01
819 1195 7.010023 CGTAAAGTATTCTTCACTTGCTGTTC 58.990 38.462 0.00 0.00 36.38 3.18
820 1196 6.704493 TCGTAAAGTATTCTTCACTTGCTGTT 59.296 34.615 0.00 0.00 36.38 3.16
821 1197 6.220930 TCGTAAAGTATTCTTCACTTGCTGT 58.779 36.000 0.00 0.00 36.38 4.40
822 1198 6.706055 TCGTAAAGTATTCTTCACTTGCTG 57.294 37.500 0.00 0.00 36.38 4.41
823 1199 7.907214 AATCGTAAAGTATTCTTCACTTGCT 57.093 32.000 0.00 0.00 36.38 3.91
824 1200 8.443937 AGAAATCGTAAAGTATTCTTCACTTGC 58.556 33.333 0.00 0.00 36.38 4.01
825 1201 9.746711 CAGAAATCGTAAAGTATTCTTCACTTG 57.253 33.333 0.00 0.00 36.38 3.16
826 1202 9.490379 ACAGAAATCGTAAAGTATTCTTCACTT 57.510 29.630 0.00 0.00 37.85 3.16
871 1247 2.033174 GGGACGAGACGGATAAAGAGTC 59.967 54.545 0.00 0.00 35.30 3.36
881 1257 0.179009 TATAGGGTGGGACGAGACGG 60.179 60.000 0.00 0.00 0.00 4.79
882 1258 1.906990 ATATAGGGTGGGACGAGACG 58.093 55.000 0.00 0.00 0.00 4.18
883 1259 5.105432 GGAATTATATAGGGTGGGACGAGAC 60.105 48.000 0.00 0.00 0.00 3.36
884 1260 5.021458 GGAATTATATAGGGTGGGACGAGA 58.979 45.833 0.00 0.00 0.00 4.04
885 1261 5.024118 AGGAATTATATAGGGTGGGACGAG 58.976 45.833 0.00 0.00 0.00 4.18
914 1293 1.812093 TGGCCGCCGACGAATTAAG 60.812 57.895 4.58 0.00 43.93 1.85
955 1334 3.213264 GGCCACGGAAGGTCGATA 58.787 61.111 0.00 0.00 0.00 2.92
1100 1479 1.884579 CAATGCAGCAACAGGAGACTT 59.115 47.619 0.00 0.00 40.21 3.01
1107 1489 1.800315 GCGAGCAATGCAGCAACAG 60.800 57.895 17.97 0.00 35.33 3.16
1357 1746 1.302366 GGTTTTCGAAGTTCACCGGT 58.698 50.000 0.00 0.00 0.00 5.28
1657 2046 3.077617 GCTCACCAGCATCTTCCTC 57.922 57.895 0.00 0.00 46.06 3.71
1951 2340 0.037326 TCATCTCCGCGAAGTGCTTT 60.037 50.000 8.23 0.00 43.27 3.51
1999 2388 0.450583 TCGTCAGCATGTCCTCGTAC 59.549 55.000 0.00 0.00 37.40 3.67
2176 2565 1.003839 CACCGCTCCAGGTTTGCTA 60.004 57.895 0.00 0.00 43.00 3.49
2177 2566 2.281761 CACCGCTCCAGGTTTGCT 60.282 61.111 0.00 0.00 43.00 3.91
2189 2578 2.672996 AACCATGGACTGCACCGC 60.673 61.111 21.47 0.00 0.00 5.68
2192 2581 1.526575 CCCACAACCATGGACTGCAC 61.527 60.000 21.47 0.00 43.02 4.57
2219 2608 5.944013 TGACTAGTCTCTCATTCTGTTTCG 58.056 41.667 23.01 0.00 0.00 3.46
2220 2609 7.918562 GGTATGACTAGTCTCTCATTCTGTTTC 59.081 40.741 23.01 0.00 0.00 2.78
2226 2615 6.460399 GGTGTGGTATGACTAGTCTCTCATTC 60.460 46.154 23.01 7.29 0.00 2.67
2232 2621 3.633065 GGAGGTGTGGTATGACTAGTCTC 59.367 52.174 23.01 13.08 0.00 3.36
2233 2622 3.633418 GGAGGTGTGGTATGACTAGTCT 58.367 50.000 23.01 11.45 0.00 3.24
2234 2623 2.358267 CGGAGGTGTGGTATGACTAGTC 59.642 54.545 16.32 16.32 0.00 2.59
2235 2624 2.025605 TCGGAGGTGTGGTATGACTAGT 60.026 50.000 0.00 0.00 0.00 2.57
2236 2625 2.358267 GTCGGAGGTGTGGTATGACTAG 59.642 54.545 0.00 0.00 0.00 2.57
2237 2626 2.372264 GTCGGAGGTGTGGTATGACTA 58.628 52.381 0.00 0.00 0.00 2.59
2238 2627 1.183549 GTCGGAGGTGTGGTATGACT 58.816 55.000 0.00 0.00 0.00 3.41
2239 2628 0.179145 CGTCGGAGGTGTGGTATGAC 60.179 60.000 0.00 0.00 0.00 3.06
2240 2629 1.317431 CCGTCGGAGGTGTGGTATGA 61.317 60.000 4.91 0.00 0.00 2.15
2242 2631 2.056223 CCCGTCGGAGGTGTGGTAT 61.056 63.158 14.39 0.00 0.00 2.73
2244 2633 4.608774 TCCCGTCGGAGGTGTGGT 62.609 66.667 14.39 0.00 32.86 4.16
2245 2634 4.065281 GTCCCGTCGGAGGTGTGG 62.065 72.222 14.39 0.00 39.51 4.17
2246 2635 2.989824 AGTCCCGTCGGAGGTGTG 60.990 66.667 14.39 0.00 39.51 3.82
2247 2636 2.675772 GAGTCCCGTCGGAGGTGT 60.676 66.667 14.39 0.00 39.51 4.16
2258 2647 3.132289 TCATTGATAGACAACGGAGTCCC 59.868 47.826 2.80 0.00 45.00 4.46
2263 2652 5.416083 ACGAATTCATTGATAGACAACGGA 58.584 37.500 6.22 0.00 41.52 4.69
2316 2705 1.332375 CCAACTGCGACGAAGGAAAAA 59.668 47.619 7.96 0.00 0.00 1.94
2317 2706 0.941542 CCAACTGCGACGAAGGAAAA 59.058 50.000 7.96 0.00 0.00 2.29
2318 2707 0.179067 ACCAACTGCGACGAAGGAAA 60.179 50.000 7.96 0.00 0.00 3.13
2319 2708 0.599204 GACCAACTGCGACGAAGGAA 60.599 55.000 7.96 0.00 0.00 3.36
2320 2709 1.006571 GACCAACTGCGACGAAGGA 60.007 57.895 7.96 0.00 0.00 3.36
2321 2710 1.006102 AGACCAACTGCGACGAAGG 60.006 57.895 7.96 0.00 0.00 3.46
2322 2711 1.337817 CGAGACCAACTGCGACGAAG 61.338 60.000 0.00 0.00 0.00 3.79
2323 2712 1.371267 CGAGACCAACTGCGACGAA 60.371 57.895 0.00 0.00 0.00 3.85
2324 2713 2.067091 AACGAGACCAACTGCGACGA 62.067 55.000 0.00 0.00 0.00 4.20
2325 2714 1.660575 AACGAGACCAACTGCGACG 60.661 57.895 0.00 0.00 0.00 5.12
2326 2715 1.557443 CCAACGAGACCAACTGCGAC 61.557 60.000 0.00 0.00 0.00 5.19
2327 2716 1.300620 CCAACGAGACCAACTGCGA 60.301 57.895 0.00 0.00 0.00 5.10
2328 2717 1.157870 AACCAACGAGACCAACTGCG 61.158 55.000 0.00 0.00 0.00 5.18
2329 2718 1.873698 TAACCAACGAGACCAACTGC 58.126 50.000 0.00 0.00 0.00 4.40
2330 2719 5.432885 AATTTAACCAACGAGACCAACTG 57.567 39.130 0.00 0.00 0.00 3.16
2331 2720 6.293027 CGTAAATTTAACCAACGAGACCAACT 60.293 38.462 4.77 0.00 35.66 3.16
2332 2721 5.847515 CGTAAATTTAACCAACGAGACCAAC 59.152 40.000 4.77 0.00 35.66 3.77
2333 2722 5.049543 CCGTAAATTTAACCAACGAGACCAA 60.050 40.000 11.09 0.00 35.66 3.67
2334 2723 4.451774 CCGTAAATTTAACCAACGAGACCA 59.548 41.667 11.09 0.00 35.66 4.02
2335 2724 4.452114 ACCGTAAATTTAACCAACGAGACC 59.548 41.667 11.09 0.00 35.66 3.85
2336 2725 5.177327 TGACCGTAAATTTAACCAACGAGAC 59.823 40.000 11.09 4.23 35.66 3.36
2337 2726 5.295950 TGACCGTAAATTTAACCAACGAGA 58.704 37.500 11.09 0.00 35.66 4.04
2338 2727 5.406175 TCTGACCGTAAATTTAACCAACGAG 59.594 40.000 11.09 5.19 35.66 4.18
2339 2728 5.295950 TCTGACCGTAAATTTAACCAACGA 58.704 37.500 11.09 0.00 35.66 3.85
2340 2729 5.178067 ACTCTGACCGTAAATTTAACCAACG 59.822 40.000 0.00 1.44 0.00 4.10
2341 2730 6.549912 ACTCTGACCGTAAATTTAACCAAC 57.450 37.500 0.00 0.00 0.00 3.77
2342 2731 8.149647 TCTAACTCTGACCGTAAATTTAACCAA 58.850 33.333 0.00 0.00 0.00 3.67
2343 2732 7.599998 GTCTAACTCTGACCGTAAATTTAACCA 59.400 37.037 0.00 0.00 0.00 3.67
2344 2733 7.063898 GGTCTAACTCTGACCGTAAATTTAACC 59.936 40.741 0.00 0.00 43.55 2.85
2345 2734 7.957615 GGTCTAACTCTGACCGTAAATTTAAC 58.042 38.462 0.00 0.00 43.55 2.01
2357 2746 1.553706 TTCCGGGGTCTAACTCTGAC 58.446 55.000 0.00 0.00 0.00 3.51
2358 2747 2.176889 CTTTCCGGGGTCTAACTCTGA 58.823 52.381 0.00 0.00 0.00 3.27
2359 2748 1.405661 GCTTTCCGGGGTCTAACTCTG 60.406 57.143 0.00 0.00 0.00 3.35
2360 2749 0.903236 GCTTTCCGGGGTCTAACTCT 59.097 55.000 0.00 0.00 0.00 3.24
2361 2750 0.459759 CGCTTTCCGGGGTCTAACTC 60.460 60.000 0.00 0.00 0.00 3.01
2362 2751 1.595357 CGCTTTCCGGGGTCTAACT 59.405 57.895 0.00 0.00 0.00 2.24
2363 2752 2.104859 GCGCTTTCCGGGGTCTAAC 61.105 63.158 0.00 0.00 37.44 2.34
2364 2753 2.266689 GCGCTTTCCGGGGTCTAA 59.733 61.111 0.00 0.00 37.44 2.10
2365 2754 4.137872 CGCGCTTTCCGGGGTCTA 62.138 66.667 5.56 0.00 45.08 2.59
2379 2768 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
2380 2769 0.941542 TCAAAATATAGTGCGCCCGC 59.058 50.000 4.18 5.60 42.35 6.13
2381 2770 3.684103 TTTCAAAATATAGTGCGCCCG 57.316 42.857 4.18 0.00 0.00 6.13
2382 2771 5.181690 TCATTTCAAAATATAGTGCGCCC 57.818 39.130 4.18 0.00 0.00 6.13
2383 2772 5.687285 CCTTCATTTCAAAATATAGTGCGCC 59.313 40.000 4.18 0.00 0.00 6.53
2384 2773 5.687285 CCCTTCATTTCAAAATATAGTGCGC 59.313 40.000 0.00 0.00 0.00 6.09
2385 2774 7.026631 TCCCTTCATTTCAAAATATAGTGCG 57.973 36.000 0.00 0.00 0.00 5.34
2386 2775 8.000780 ACTCCCTTCATTTCAAAATATAGTGC 57.999 34.615 0.00 0.00 0.00 4.40
2444 2833 8.239314 AGAAACAACATGTATTCATCATGACAC 58.761 33.333 16.60 0.00 43.47 3.67
2445 2834 8.339344 AGAAACAACATGTATTCATCATGACA 57.661 30.769 16.60 0.00 43.47 3.58
2482 2871 3.749609 GGTTACACACGTGCTAGGAAAAT 59.250 43.478 17.22 0.00 0.00 1.82
2550 2939 1.065491 TGTATGTGCCAGGCTCGAAAT 60.065 47.619 14.15 1.47 0.00 2.17
2580 2969 8.986477 ACTTCAAAATATGAATTTGTGGCTAC 57.014 30.769 0.00 0.00 46.62 3.58
2581 2970 9.638239 GAACTTCAAAATATGAATTTGTGGCTA 57.362 29.630 0.00 0.00 46.62 3.93
2582 2971 7.603784 GGAACTTCAAAATATGAATTTGTGGCT 59.396 33.333 0.00 0.00 46.62 4.75
2583 2972 7.603784 AGGAACTTCAAAATATGAATTTGTGGC 59.396 33.333 0.00 0.00 46.62 5.01
2660 4462 2.979813 GTTGCACCTTGTAATTGCTTCG 59.020 45.455 0.00 0.00 37.16 3.79
2664 4466 1.668628 CGGGTTGCACCTTGTAATTGC 60.669 52.381 5.48 0.00 38.64 3.56
2682 4484 0.041663 CTGTGTACGTGGTTTTGCGG 60.042 55.000 0.00 0.00 0.00 5.69
2701 4503 1.153289 ACTCATCACCGCATCAGGC 60.153 57.895 0.00 0.00 39.90 4.85
2702 4504 1.434622 GCACTCATCACCGCATCAGG 61.435 60.000 0.00 0.00 37.30 3.86
2704 4506 0.107557 ATGCACTCATCACCGCATCA 60.108 50.000 0.00 0.00 41.05 3.07
2707 4509 0.741927 CTCATGCACTCATCACCGCA 60.742 55.000 0.00 0.00 39.01 5.69
2723 4525 3.259374 CCCTTCTACTTCTGTTCTGCTCA 59.741 47.826 0.00 0.00 0.00 4.26
2749 4551 2.180276 GGAGCTAGAGGACTCAACCAA 58.820 52.381 1.75 0.00 34.48 3.67
2777 4619 1.918800 ACGAGGCTAGGCTTTGGGT 60.919 57.895 21.21 12.94 0.00 4.51
2856 6810 1.581934 CTTTGGAAGCACAGTGACGA 58.418 50.000 4.15 0.00 0.00 4.20
2877 6831 3.264193 TCTCACCCTACCGACTGTTAGTA 59.736 47.826 0.00 0.00 0.00 1.82
2880 6834 2.306805 TCTCTCACCCTACCGACTGTTA 59.693 50.000 0.00 0.00 0.00 2.41
2888 6842 1.410507 GGTCTCCTCTCTCACCCTACC 60.411 61.905 0.00 0.00 0.00 3.18
2916 6870 1.056660 CCACACTCCCACTACCTTGT 58.943 55.000 0.00 0.00 0.00 3.16
2931 6885 1.600013 GTGTGTTATTGCGTGACCACA 59.400 47.619 0.85 0.00 0.00 4.17
2932 6886 1.600013 TGTGTGTTATTGCGTGACCAC 59.400 47.619 0.00 0.00 0.00 4.16
2942 6896 6.947733 TCTTTCCAGGATTGATGTGTGTTATT 59.052 34.615 0.00 0.00 0.00 1.40
2953 6907 4.040047 TGGAGCTATCTTTCCAGGATTGA 58.960 43.478 0.00 0.00 38.53 2.57
2975 6930 2.173569 CCAATGCTAACCTTCCTAGCCT 59.826 50.000 0.00 0.00 40.95 4.58
3014 6969 1.278172 CGTCAAGTGTGGCACGAGAG 61.278 60.000 13.77 3.41 39.64 3.20
3090 7045 1.741706 CTCATGCTGATTTTGCGTCCT 59.258 47.619 0.00 0.00 0.00 3.85
3092 7047 1.202222 CCCTCATGCTGATTTTGCGTC 60.202 52.381 0.00 0.00 0.00 5.19
3093 7048 0.813184 CCCTCATGCTGATTTTGCGT 59.187 50.000 0.00 0.00 0.00 5.24
3094 7049 1.065102 CTCCCTCATGCTGATTTTGCG 59.935 52.381 0.00 0.00 0.00 4.85
3095 7050 1.407979 CCTCCCTCATGCTGATTTTGC 59.592 52.381 0.00 0.00 0.00 3.68
3096 7051 1.407979 GCCTCCCTCATGCTGATTTTG 59.592 52.381 0.00 0.00 0.00 2.44
3099 7054 1.535685 GGCCTCCCTCATGCTGATT 59.464 57.895 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.