Multiple sequence alignment - TraesCS2A01G129300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G129300 chr2A 100.000 4696 0 0 1 4696 77334703 77339398 0.000000e+00 8672
1 TraesCS2A01G129300 chr2A 79.358 1371 243 30 1770 3114 716477396 716478752 0.000000e+00 928
2 TraesCS2A01G129300 chr2A 75.940 665 151 7 1057 1718 716467131 716467789 2.710000e-87 333
3 TraesCS2A01G129300 chr2B 92.189 4212 164 45 368 4557 118322521 118326589 0.000000e+00 5803
4 TraesCS2A01G129300 chr2B 87.981 208 21 3 10 214 118322321 118322527 4.690000e-60 243
5 TraesCS2A01G129300 chr7B 78.310 2734 483 77 1034 3695 750246473 750249168 0.000000e+00 1663
6 TraesCS2A01G129300 chr7B 78.039 2682 476 78 1087 3691 750172449 750175094 0.000000e+00 1585
7 TraesCS2A01G129300 chr7B 76.499 2668 541 68 1068 3690 712071497 712074123 0.000000e+00 1375
8 TraesCS2A01G129300 chr7B 75.459 2017 402 67 986 2954 750148580 750150551 0.000000e+00 896
9 TraesCS2A01G129300 chr7B 77.140 1203 220 40 1193 2372 750196767 750197937 0.000000e+00 647
10 TraesCS2A01G129300 chr7B 79.455 477 83 12 1087 1558 750578482 750578948 1.630000e-84 324
11 TraesCS2A01G129300 chr7B 73.592 799 160 39 2768 3533 692889640 692890420 4.660000e-65 259
12 TraesCS2A01G129300 chr1D 76.105 2624 538 65 976 3542 416841890 416844481 0.000000e+00 1290
13 TraesCS2A01G129300 chr7A 81.690 1562 260 21 1034 2582 732936378 732934830 0.000000e+00 1277
14 TraesCS2A01G129300 chr7A 76.690 1982 375 60 1770 3690 732922510 732920555 0.000000e+00 1020
15 TraesCS2A01G129300 chr7A 76.767 1528 308 36 1045 2547 732805281 732803776 0.000000e+00 811
16 TraesCS2A01G129300 chr7A 75.129 969 196 26 2753 3691 732934634 732933681 3.380000e-111 412
17 TraesCS2A01G129300 chr7A 73.298 955 216 27 2758 3691 732803544 732802608 9.810000e-82 315
18 TraesCS2A01G129300 chr7A 98.039 153 3 0 213 365 405063638 405063486 2.790000e-67 267
19 TraesCS2A01G129300 chr7D 77.022 2089 392 67 1009 3047 633670037 633672087 0.000000e+00 1118
20 TraesCS2A01G129300 chr7D 77.291 1942 388 48 1775 3690 617932207 617934121 0.000000e+00 1094
21 TraesCS2A01G129300 chr1B 79.149 1621 313 21 974 2580 563673391 563675000 0.000000e+00 1098
22 TraesCS2A01G129300 chr6B 75.678 1953 389 67 1070 2976 708126736 708124824 0.000000e+00 896
23 TraesCS2A01G129300 chr6B 77.049 1098 213 28 1481 2563 708057407 708056334 3.130000e-166 595
24 TraesCS2A01G129300 chr6B 93.333 150 10 0 215 364 72873103 72873252 6.120000e-54 222
25 TraesCS2A01G129300 chr6B 92.105 152 12 0 215 366 72927260 72927411 1.020000e-51 215
26 TraesCS2A01G129300 chr6B 92.105 152 12 0 215 366 72961915 72962066 1.020000e-51 215
27 TraesCS2A01G129300 chr6B 78.544 261 42 13 3354 3607 708071670 708071417 4.860000e-35 159
28 TraesCS2A01G129300 chr6D 77.954 1388 252 35 1190 2556 464432911 464431557 0.000000e+00 819
29 TraesCS2A01G129300 chr4A 98.039 153 3 0 213 365 631506796 631506644 2.790000e-67 267
30 TraesCS2A01G129300 chr4B 96.026 151 6 0 215 365 24396529 24396679 3.630000e-61 246
31 TraesCS2A01G129300 chr2D 94.667 150 8 0 216 365 16762577 16762428 2.830000e-57 233
32 TraesCS2A01G129300 chr6A 91.447 152 13 0 215 366 600110748 600110597 4.760000e-50 209
33 TraesCS2A01G129300 chr4D 95.122 82 4 0 212 293 400894950 400894869 3.810000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G129300 chr2A 77334703 77339398 4695 False 8672.0 8672 100.0000 1 4696 1 chr2A.!!$F1 4695
1 TraesCS2A01G129300 chr2A 716477396 716478752 1356 False 928.0 928 79.3580 1770 3114 1 chr2A.!!$F3 1344
2 TraesCS2A01G129300 chr2A 716467131 716467789 658 False 333.0 333 75.9400 1057 1718 1 chr2A.!!$F2 661
3 TraesCS2A01G129300 chr2B 118322321 118326589 4268 False 3023.0 5803 90.0850 10 4557 2 chr2B.!!$F1 4547
4 TraesCS2A01G129300 chr7B 750246473 750249168 2695 False 1663.0 1663 78.3100 1034 3695 1 chr7B.!!$F6 2661
5 TraesCS2A01G129300 chr7B 750172449 750175094 2645 False 1585.0 1585 78.0390 1087 3691 1 chr7B.!!$F4 2604
6 TraesCS2A01G129300 chr7B 712071497 712074123 2626 False 1375.0 1375 76.4990 1068 3690 1 chr7B.!!$F2 2622
7 TraesCS2A01G129300 chr7B 750148580 750150551 1971 False 896.0 896 75.4590 986 2954 1 chr7B.!!$F3 1968
8 TraesCS2A01G129300 chr7B 750196767 750197937 1170 False 647.0 647 77.1400 1193 2372 1 chr7B.!!$F5 1179
9 TraesCS2A01G129300 chr7B 692889640 692890420 780 False 259.0 259 73.5920 2768 3533 1 chr7B.!!$F1 765
10 TraesCS2A01G129300 chr1D 416841890 416844481 2591 False 1290.0 1290 76.1050 976 3542 1 chr1D.!!$F1 2566
11 TraesCS2A01G129300 chr7A 732920555 732922510 1955 True 1020.0 1020 76.6900 1770 3690 1 chr7A.!!$R2 1920
12 TraesCS2A01G129300 chr7A 732933681 732936378 2697 True 844.5 1277 78.4095 1034 3691 2 chr7A.!!$R4 2657
13 TraesCS2A01G129300 chr7A 732802608 732805281 2673 True 563.0 811 75.0325 1045 3691 2 chr7A.!!$R3 2646
14 TraesCS2A01G129300 chr7D 633670037 633672087 2050 False 1118.0 1118 77.0220 1009 3047 1 chr7D.!!$F2 2038
15 TraesCS2A01G129300 chr7D 617932207 617934121 1914 False 1094.0 1094 77.2910 1775 3690 1 chr7D.!!$F1 1915
16 TraesCS2A01G129300 chr1B 563673391 563675000 1609 False 1098.0 1098 79.1490 974 2580 1 chr1B.!!$F1 1606
17 TraesCS2A01G129300 chr6B 708124824 708126736 1912 True 896.0 896 75.6780 1070 2976 1 chr6B.!!$R3 1906
18 TraesCS2A01G129300 chr6B 708056334 708057407 1073 True 595.0 595 77.0490 1481 2563 1 chr6B.!!$R1 1082
19 TraesCS2A01G129300 chr6D 464431557 464432911 1354 True 819.0 819 77.9540 1190 2556 1 chr6D.!!$R1 1366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 269 0.029834 ATTTGGAATCGATGCAGCGC 59.970 50.000 21.48 6.07 0.00 5.92 F
359 362 0.039798 GACTGTCGTCCGTACAGCAA 60.040 55.000 14.69 0.00 46.73 3.91 F
861 872 0.304098 GCTCAAGCGCAGTCATCATC 59.696 55.000 11.47 0.00 0.00 2.92 F
1027 1038 0.320421 GTCTGCTGTTAAGGCCGTCA 60.320 55.000 0.00 0.00 0.00 4.35 F
1030 1041 0.323302 TGCTGTTAAGGCCGTCATCA 59.677 50.000 0.00 0.00 0.00 3.07 F
1442 1456 0.519077 GTTCTAGGCAAGTGCTGTGC 59.481 55.000 2.85 0.00 41.70 4.57 F
2258 2287 1.608109 TCGCAGTTACAACGACCTACA 59.392 47.619 0.00 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 1779 0.246635 CCCACCTCACACTAACGGAG 59.753 60.000 0.00 0.0 0.00 4.63 R
1768 1797 2.158219 TCTCCTTTCCCACCTCACACTA 60.158 50.000 0.00 0.0 0.00 2.74 R
2623 2708 3.815401 GTGTCAGCAAGAAACACCATACT 59.185 43.478 0.00 0.0 37.84 2.12 R
2645 2752 4.550577 TGCATTATAAAGTGCATCCACG 57.449 40.909 9.22 0.0 45.60 4.94 R
3161 3325 7.707104 AGGTTGTTAGTTGTCTCATTTTTCTG 58.293 34.615 0.00 0.0 0.00 3.02 R
3357 3524 0.251832 AGGATCGGCATCGGGTCTAT 60.252 55.000 0.00 0.0 36.95 1.98 R
3833 4002 0.324091 AAGCAAGGCAGGGAAGGATG 60.324 55.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.083484 CCCTCGGACATTTTTACAGTTGTC 60.083 45.833 0.00 0.00 38.17 3.18
63 64 2.233922 CCCTAGAGTCAAATCCACGTGT 59.766 50.000 15.65 0.00 0.00 4.49
77 78 3.375922 TCCACGTGTGAAAGAGGAAAAAC 59.624 43.478 15.65 0.00 0.00 2.43
93 96 7.027874 AGGAAAAACAGGTGGTCAGATATAA 57.972 36.000 0.00 0.00 0.00 0.98
96 99 8.027189 GGAAAAACAGGTGGTCAGATATAAAAC 58.973 37.037 0.00 0.00 0.00 2.43
116 119 3.090037 ACTGATCCTCGTATATTCCCGG 58.910 50.000 0.00 0.00 0.00 5.73
129 132 1.158434 TTCCCGGTACATTTGAACGC 58.842 50.000 0.00 0.00 0.00 4.84
130 133 0.035036 TCCCGGTACATTTGAACGCA 59.965 50.000 0.00 0.00 0.00 5.24
170 173 1.898154 GGTCGGCACCAGTATGACT 59.102 57.895 0.00 0.00 43.17 3.41
171 174 0.460284 GGTCGGCACCAGTATGACTG 60.460 60.000 0.00 0.00 45.53 3.51
196 199 4.168760 GCAGCAGGAAAATGTGTTATGAC 58.831 43.478 0.00 0.00 0.00 3.06
200 203 4.671766 GCAGGAAAATGTGTTATGACGACC 60.672 45.833 0.00 0.00 0.00 4.79
206 209 2.601804 TGTGTTATGACGACCACGATG 58.398 47.619 0.00 0.00 42.66 3.84
222 225 3.106552 TGGTGACAACAACGCTGC 58.893 55.556 0.00 0.00 36.36 5.25
223 226 1.451207 TGGTGACAACAACGCTGCT 60.451 52.632 0.00 0.00 36.36 4.24
224 227 0.179070 TGGTGACAACAACGCTGCTA 60.179 50.000 0.00 0.00 36.36 3.49
225 228 0.234884 GGTGACAACAACGCTGCTAC 59.765 55.000 0.00 0.00 0.00 3.58
226 229 0.934496 GTGACAACAACGCTGCTACA 59.066 50.000 0.00 0.00 0.00 2.74
227 230 0.934496 TGACAACAACGCTGCTACAC 59.066 50.000 0.00 0.00 0.00 2.90
228 231 0.934496 GACAACAACGCTGCTACACA 59.066 50.000 0.00 0.00 0.00 3.72
238 241 4.598257 GCTACACAGCCGACACAT 57.402 55.556 0.00 0.00 42.37 3.21
239 242 2.840974 GCTACACAGCCGACACATT 58.159 52.632 0.00 0.00 42.37 2.71
240 243 0.443869 GCTACACAGCCGACACATTG 59.556 55.000 0.00 0.00 42.37 2.82
241 244 1.795768 CTACACAGCCGACACATTGT 58.204 50.000 0.00 0.00 0.00 2.71
242 245 1.460743 CTACACAGCCGACACATTGTG 59.539 52.381 15.18 15.18 44.81 3.33
243 246 1.165907 ACACAGCCGACACATTGTGG 61.166 55.000 20.33 4.61 43.86 4.17
244 247 0.884259 CACAGCCGACACATTGTGGA 60.884 55.000 20.33 0.00 37.94 4.02
245 248 0.884704 ACAGCCGACACATTGTGGAC 60.885 55.000 20.33 12.60 37.94 4.02
246 249 1.667830 AGCCGACACATTGTGGACG 60.668 57.895 20.33 21.51 37.94 4.79
247 250 1.666553 GCCGACACATTGTGGACGA 60.667 57.895 27.26 0.00 38.70 4.20
248 251 1.019278 GCCGACACATTGTGGACGAT 61.019 55.000 27.26 8.04 38.70 3.73
249 252 1.438651 CCGACACATTGTGGACGATT 58.561 50.000 27.26 7.43 38.70 3.34
250 253 1.804151 CCGACACATTGTGGACGATTT 59.196 47.619 27.26 6.82 38.70 2.17
251 254 2.412716 CCGACACATTGTGGACGATTTG 60.413 50.000 27.26 14.48 38.70 2.32
252 255 2.412716 CGACACATTGTGGACGATTTGG 60.413 50.000 23.84 2.08 38.70 3.28
253 256 2.811431 GACACATTGTGGACGATTTGGA 59.189 45.455 20.33 0.00 37.94 3.53
254 257 3.218453 ACACATTGTGGACGATTTGGAA 58.782 40.909 20.33 0.00 37.94 3.53
255 258 3.826157 ACACATTGTGGACGATTTGGAAT 59.174 39.130 20.33 0.00 37.94 3.01
256 259 4.082787 ACACATTGTGGACGATTTGGAATC 60.083 41.667 20.33 0.00 37.94 2.52
257 260 3.126858 ACATTGTGGACGATTTGGAATCG 59.873 43.478 18.35 18.35 46.02 3.34
258 261 2.753055 TGTGGACGATTTGGAATCGA 57.247 45.000 24.61 4.82 43.59 3.59
259 262 3.260475 TGTGGACGATTTGGAATCGAT 57.740 42.857 24.61 12.08 43.59 3.59
260 263 2.935849 TGTGGACGATTTGGAATCGATG 59.064 45.455 24.61 2.22 43.59 3.84
261 264 1.939934 TGGACGATTTGGAATCGATGC 59.060 47.619 24.61 15.75 43.59 3.91
262 265 1.939934 GGACGATTTGGAATCGATGCA 59.060 47.619 24.61 0.00 43.59 3.96
263 266 2.032549 GGACGATTTGGAATCGATGCAG 60.033 50.000 24.61 0.99 43.59 4.41
264 267 1.331756 ACGATTTGGAATCGATGCAGC 59.668 47.619 24.61 0.00 43.59 5.25
265 268 1.658373 CGATTTGGAATCGATGCAGCG 60.658 52.381 20.14 20.14 43.59 5.18
266 269 0.029834 ATTTGGAATCGATGCAGCGC 59.970 50.000 21.48 6.07 0.00 5.92
267 270 1.304509 TTTGGAATCGATGCAGCGCA 61.305 50.000 21.48 9.08 44.86 6.09
276 279 2.752640 TGCAGCGCATCAAGCCAT 60.753 55.556 11.47 0.00 41.38 4.40
277 280 2.025727 GCAGCGCATCAAGCCATC 59.974 61.111 11.47 0.00 41.38 3.51
278 281 2.719979 CAGCGCATCAAGCCATCC 59.280 61.111 11.47 0.00 41.38 3.51
279 282 2.116533 CAGCGCATCAAGCCATCCA 61.117 57.895 11.47 0.00 41.38 3.41
280 283 1.152819 AGCGCATCAAGCCATCCAT 60.153 52.632 11.47 0.00 41.38 3.41
281 284 1.007734 GCGCATCAAGCCATCCATG 60.008 57.895 0.30 0.00 41.38 3.66
282 285 1.007734 CGCATCAAGCCATCCATGC 60.008 57.895 0.00 0.00 41.38 4.06
283 286 1.730451 CGCATCAAGCCATCCATGCA 61.730 55.000 0.00 0.00 41.51 3.96
284 287 0.462375 GCATCAAGCCATCCATGCAA 59.538 50.000 0.00 0.00 41.16 4.08
285 288 1.070134 GCATCAAGCCATCCATGCAAT 59.930 47.619 0.00 0.00 41.16 3.56
286 289 2.484770 GCATCAAGCCATCCATGCAATT 60.485 45.455 0.00 0.00 41.16 2.32
287 290 3.243941 GCATCAAGCCATCCATGCAATTA 60.244 43.478 0.00 0.00 41.16 1.40
288 291 4.556233 CATCAAGCCATCCATGCAATTAG 58.444 43.478 0.00 0.00 0.00 1.73
289 292 2.363038 TCAAGCCATCCATGCAATTAGC 59.637 45.455 0.00 0.00 45.96 3.09
303 306 4.487948 GCAATTAGCAAAAGTGAGCATCA 58.512 39.130 3.78 0.00 43.87 3.07
312 315 3.791640 TGAGCATCACCGTCCACT 58.208 55.556 0.00 0.00 42.56 4.00
313 316 1.591703 TGAGCATCACCGTCCACTC 59.408 57.895 0.00 0.00 42.56 3.51
314 317 1.153549 GAGCATCACCGTCCACTCC 60.154 63.158 0.00 0.00 33.17 3.85
315 318 1.608717 GAGCATCACCGTCCACTCCT 61.609 60.000 0.00 0.00 33.17 3.69
316 319 1.153549 GCATCACCGTCCACTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
317 320 1.517832 CATCACCGTCCACTCCTCC 59.482 63.158 0.00 0.00 0.00 4.30
318 321 1.686110 ATCACCGTCCACTCCTCCC 60.686 63.158 0.00 0.00 0.00 4.30
319 322 3.760035 CACCGTCCACTCCTCCCG 61.760 72.222 0.00 0.00 0.00 5.14
320 323 4.296729 ACCGTCCACTCCTCCCGT 62.297 66.667 0.00 0.00 0.00 5.28
321 324 3.450115 CCGTCCACTCCTCCCGTC 61.450 72.222 0.00 0.00 0.00 4.79
322 325 3.812019 CGTCCACTCCTCCCGTCG 61.812 72.222 0.00 0.00 0.00 5.12
323 326 2.675772 GTCCACTCCTCCCGTCGT 60.676 66.667 0.00 0.00 0.00 4.34
324 327 2.360852 TCCACTCCTCCCGTCGTC 60.361 66.667 0.00 0.00 0.00 4.20
325 328 3.450115 CCACTCCTCCCGTCGTCC 61.450 72.222 0.00 0.00 0.00 4.79
326 329 2.675423 CACTCCTCCCGTCGTCCA 60.675 66.667 0.00 0.00 0.00 4.02
327 330 2.675772 ACTCCTCCCGTCGTCCAC 60.676 66.667 0.00 0.00 0.00 4.02
328 331 2.675423 CTCCTCCCGTCGTCCACA 60.675 66.667 0.00 0.00 0.00 4.17
329 332 2.675423 TCCTCCCGTCGTCCACAG 60.675 66.667 0.00 0.00 0.00 3.66
330 333 2.989824 CCTCCCGTCGTCCACAGT 60.990 66.667 0.00 0.00 0.00 3.55
331 334 2.571216 CCTCCCGTCGTCCACAGTT 61.571 63.158 0.00 0.00 0.00 3.16
332 335 1.080705 CTCCCGTCGTCCACAGTTC 60.081 63.158 0.00 0.00 0.00 3.01
333 336 2.430244 CCCGTCGTCCACAGTTCG 60.430 66.667 0.00 0.00 0.00 3.95
334 337 2.430244 CCGTCGTCCACAGTTCGG 60.430 66.667 0.00 0.00 0.00 4.30
335 338 3.103911 CGTCGTCCACAGTTCGGC 61.104 66.667 0.00 0.00 0.00 5.54
336 339 2.737376 GTCGTCCACAGTTCGGCC 60.737 66.667 0.00 0.00 0.00 6.13
337 340 4.351938 TCGTCCACAGTTCGGCCG 62.352 66.667 22.12 22.12 0.00 6.13
353 356 3.792047 CGGCGACTGTCGTCCGTA 61.792 66.667 35.39 0.00 46.39 4.02
354 357 2.202401 GGCGACTGTCGTCCGTAC 60.202 66.667 28.38 12.49 42.81 3.67
355 358 2.557805 GCGACTGTCGTCCGTACA 59.442 61.111 28.38 0.00 42.81 2.90
357 360 1.511464 CGACTGTCGTCCGTACAGC 60.511 63.158 21.30 9.44 46.73 4.40
358 361 1.577922 GACTGTCGTCCGTACAGCA 59.422 57.895 14.69 0.00 46.73 4.41
359 362 0.039798 GACTGTCGTCCGTACAGCAA 60.040 55.000 14.69 0.00 46.73 3.91
360 363 0.601558 ACTGTCGTCCGTACAGCAAT 59.398 50.000 14.69 0.16 46.73 3.56
361 364 1.000506 ACTGTCGTCCGTACAGCAATT 59.999 47.619 14.69 0.00 46.73 2.32
362 365 2.066262 CTGTCGTCCGTACAGCAATTT 58.934 47.619 0.00 0.00 38.08 1.82
363 366 2.063266 TGTCGTCCGTACAGCAATTTC 58.937 47.619 0.00 0.00 0.00 2.17
364 367 1.058695 GTCGTCCGTACAGCAATTTCG 59.941 52.381 0.00 0.00 0.00 3.46
365 368 1.065358 CGTCCGTACAGCAATTTCGT 58.935 50.000 0.00 0.00 0.00 3.85
366 369 1.201769 CGTCCGTACAGCAATTTCGTG 60.202 52.381 0.00 0.00 0.00 4.35
367 370 1.127951 GTCCGTACAGCAATTTCGTGG 59.872 52.381 0.00 0.00 0.00 4.94
368 371 1.153353 CCGTACAGCAATTTCGTGGT 58.847 50.000 0.00 0.00 0.00 4.16
382 385 0.859232 CGTGGTGACAAAGAAGTCCG 59.141 55.000 0.00 0.00 46.06 4.79
477 480 1.006571 TTCGTCCTTCGCACTCCAC 60.007 57.895 0.00 0.00 39.67 4.02
478 481 1.740332 TTCGTCCTTCGCACTCCACA 61.740 55.000 0.00 0.00 39.67 4.17
479 482 1.734477 CGTCCTTCGCACTCCACAG 60.734 63.158 0.00 0.00 0.00 3.66
480 483 1.367840 GTCCTTCGCACTCCACAGT 59.632 57.895 0.00 0.00 0.00 3.55
481 484 0.667792 GTCCTTCGCACTCCACAGTC 60.668 60.000 0.00 0.00 0.00 3.51
483 486 0.946221 CCTTCGCACTCCACAGTCAC 60.946 60.000 0.00 0.00 0.00 3.67
484 487 1.278172 CTTCGCACTCCACAGTCACG 61.278 60.000 0.00 0.00 32.67 4.35
485 488 2.693250 TTCGCACTCCACAGTCACGG 62.693 60.000 0.00 0.00 32.40 4.94
486 489 2.357517 GCACTCCACAGTCACGGG 60.358 66.667 0.00 0.00 0.00 5.28
487 490 3.138625 CACTCCACAGTCACGGGT 58.861 61.111 0.00 0.00 0.00 5.28
488 491 1.006102 CACTCCACAGTCACGGGTC 60.006 63.158 0.00 0.00 0.00 4.46
489 492 1.152525 ACTCCACAGTCACGGGTCT 60.153 57.895 0.00 0.00 0.00 3.85
490 493 0.759436 ACTCCACAGTCACGGGTCTT 60.759 55.000 0.00 0.00 0.00 3.01
491 494 0.393077 CTCCACAGTCACGGGTCTTT 59.607 55.000 0.00 0.00 0.00 2.52
492 495 0.391597 TCCACAGTCACGGGTCTTTC 59.608 55.000 0.00 0.00 0.00 2.62
493 496 0.602905 CCACAGTCACGGGTCTTTCC 60.603 60.000 0.00 0.00 0.00 3.13
494 497 0.393077 CACAGTCACGGGTCTTTCCT 59.607 55.000 0.00 0.00 36.25 3.36
496 499 0.679505 CAGTCACGGGTCTTTCCTGA 59.320 55.000 0.00 0.00 45.09 3.86
497 500 1.276421 CAGTCACGGGTCTTTCCTGAT 59.724 52.381 0.00 0.00 45.09 2.90
498 501 2.496070 CAGTCACGGGTCTTTCCTGATA 59.504 50.000 0.00 0.00 45.09 2.15
499 502 3.056107 CAGTCACGGGTCTTTCCTGATAA 60.056 47.826 0.00 0.00 45.09 1.75
500 503 3.581332 AGTCACGGGTCTTTCCTGATAAA 59.419 43.478 0.00 0.00 45.09 1.40
501 504 3.933332 GTCACGGGTCTTTCCTGATAAAG 59.067 47.826 0.00 0.00 45.09 1.85
502 505 3.835978 TCACGGGTCTTTCCTGATAAAGA 59.164 43.478 0.00 0.00 45.09 2.52
503 506 4.285003 TCACGGGTCTTTCCTGATAAAGAA 59.715 41.667 0.89 0.00 44.75 2.52
504 507 5.001232 CACGGGTCTTTCCTGATAAAGAAA 58.999 41.667 0.89 0.00 44.75 2.52
505 508 5.648092 CACGGGTCTTTCCTGATAAAGAAAT 59.352 40.000 0.89 0.00 44.75 2.17
506 509 5.648092 ACGGGTCTTTCCTGATAAAGAAATG 59.352 40.000 0.89 0.00 44.75 2.32
519 522 7.031372 TGATAAAGAAATGCTCTGCAATCAAC 58.969 34.615 0.00 0.00 43.62 3.18
526 529 3.678289 TGCTCTGCAATCAACACACTAT 58.322 40.909 0.00 0.00 34.76 2.12
540 543 7.269316 TCAACACACTATTACTTGTCAACTCA 58.731 34.615 0.00 0.00 0.00 3.41
561 564 7.155328 ACTCAGACACGAAATATCAAGACTTT 58.845 34.615 0.00 0.00 0.00 2.66
579 582 0.843309 TTTCTCTCCACCCAGCAACA 59.157 50.000 0.00 0.00 0.00 3.33
580 583 1.067295 TTCTCTCCACCCAGCAACAT 58.933 50.000 0.00 0.00 0.00 2.71
582 585 1.303561 TCTCCACCCAGCAACATGC 60.304 57.895 0.00 0.00 45.46 4.06
595 598 3.367607 GCAACATGCTCTCTCTAGTACG 58.632 50.000 0.00 0.00 40.96 3.67
596 599 3.065510 GCAACATGCTCTCTCTAGTACGA 59.934 47.826 0.00 0.00 40.96 3.43
597 600 4.261405 GCAACATGCTCTCTCTAGTACGAT 60.261 45.833 0.00 0.00 40.96 3.73
598 601 5.734786 GCAACATGCTCTCTCTAGTACGATT 60.735 44.000 0.00 0.00 40.96 3.34
599 602 6.269315 CAACATGCTCTCTCTAGTACGATTT 58.731 40.000 0.00 0.00 0.00 2.17
600 603 7.418408 CAACATGCTCTCTCTAGTACGATTTA 58.582 38.462 0.00 0.00 0.00 1.40
601 604 6.961576 ACATGCTCTCTCTAGTACGATTTAC 58.038 40.000 0.00 0.00 0.00 2.01
602 605 6.542735 ACATGCTCTCTCTAGTACGATTTACA 59.457 38.462 0.00 0.00 0.00 2.41
603 606 7.229707 ACATGCTCTCTCTAGTACGATTTACAT 59.770 37.037 0.00 0.00 0.00 2.29
604 607 6.960468 TGCTCTCTCTAGTACGATTTACATG 58.040 40.000 0.00 0.00 0.00 3.21
605 608 6.766467 TGCTCTCTCTAGTACGATTTACATGA 59.234 38.462 0.00 0.00 0.00 3.07
606 609 7.073265 GCTCTCTCTAGTACGATTTACATGAC 58.927 42.308 0.00 0.00 0.00 3.06
607 610 7.041644 GCTCTCTCTAGTACGATTTACATGACT 60.042 40.741 0.00 0.00 0.00 3.41
608 611 8.144155 TCTCTCTAGTACGATTTACATGACTG 57.856 38.462 0.00 0.00 0.00 3.51
612 615 5.916661 AGTACGATTTACATGACTGGAGT 57.083 39.130 0.00 0.00 0.00 3.85
614 617 3.861840 ACGATTTACATGACTGGAGTGG 58.138 45.455 0.00 0.00 0.00 4.00
618 621 2.919772 TACATGACTGGAGTGGGAGA 57.080 50.000 0.00 0.00 0.00 3.71
631 634 4.200283 GGAGAGAGCCCAGCGACG 62.200 72.222 0.00 0.00 0.00 5.12
655 658 1.446792 CGCGCTGACATTGAGGACT 60.447 57.895 5.56 0.00 0.00 3.85
675 678 3.571401 ACTTGAAGAATTTGTGGGAGCAG 59.429 43.478 0.00 0.00 0.00 4.24
676 679 3.507162 TGAAGAATTTGTGGGAGCAGA 57.493 42.857 0.00 0.00 0.00 4.26
677 680 3.415212 TGAAGAATTTGTGGGAGCAGAG 58.585 45.455 0.00 0.00 0.00 3.35
678 681 3.181440 TGAAGAATTTGTGGGAGCAGAGT 60.181 43.478 0.00 0.00 0.00 3.24
679 682 4.041567 TGAAGAATTTGTGGGAGCAGAGTA 59.958 41.667 0.00 0.00 0.00 2.59
680 683 3.944087 AGAATTTGTGGGAGCAGAGTAC 58.056 45.455 0.00 0.00 0.00 2.73
681 684 2.789409 ATTTGTGGGAGCAGAGTACC 57.211 50.000 0.00 0.00 0.00 3.34
682 685 0.320374 TTTGTGGGAGCAGAGTACCG 59.680 55.000 0.00 0.00 0.00 4.02
683 686 0.541063 TTGTGGGAGCAGAGTACCGA 60.541 55.000 0.00 0.00 0.00 4.69
684 687 0.541063 TGTGGGAGCAGAGTACCGAA 60.541 55.000 0.00 0.00 0.00 4.30
685 688 0.606604 GTGGGAGCAGAGTACCGAAA 59.393 55.000 0.00 0.00 0.00 3.46
686 689 0.606604 TGGGAGCAGAGTACCGAAAC 59.393 55.000 0.00 0.00 0.00 2.78
687 690 0.606604 GGGAGCAGAGTACCGAAACA 59.393 55.000 0.00 0.00 0.00 2.83
688 691 1.404315 GGGAGCAGAGTACCGAAACAG 60.404 57.143 0.00 0.00 0.00 3.16
689 692 1.351153 GAGCAGAGTACCGAAACAGC 58.649 55.000 0.00 0.00 0.00 4.40
745 756 3.055385 CGGTGAGTATCTCCCCTTTTCAA 60.055 47.826 0.00 0.00 45.71 2.69
765 776 4.039973 TCAATTCTCCTCGGTACAAGTGTT 59.960 41.667 0.00 0.00 0.00 3.32
773 784 2.299013 TCGGTACAAGTGTTCAGCTCAT 59.701 45.455 0.00 0.00 0.00 2.90
775 786 3.498397 CGGTACAAGTGTTCAGCTCATTT 59.502 43.478 0.00 0.00 0.00 2.32
861 872 0.304098 GCTCAAGCGCAGTCATCATC 59.696 55.000 11.47 0.00 0.00 2.92
863 874 2.210961 CTCAAGCGCAGTCATCATCAT 58.789 47.619 11.47 0.00 0.00 2.45
865 876 3.126073 TCAAGCGCAGTCATCATCATAC 58.874 45.455 11.47 0.00 0.00 2.39
869 880 4.302455 AGCGCAGTCATCATCATACTAAC 58.698 43.478 11.47 0.00 0.00 2.34
1007 1018 1.030457 GAGGAGCAATCAATGGCTGG 58.970 55.000 0.00 0.00 41.22 4.85
1027 1038 0.320421 GTCTGCTGTTAAGGCCGTCA 60.320 55.000 0.00 0.00 0.00 4.35
1030 1041 0.323302 TGCTGTTAAGGCCGTCATCA 59.677 50.000 0.00 0.00 0.00 3.07
1083 1094 4.141482 ACCTCACTTTTATGTGGTGTCACT 60.141 41.667 2.35 0.00 43.23 3.41
1344 1355 5.182570 GGTTACCCTTCATAAAGTTGGTGTC 59.817 44.000 0.00 0.00 31.73 3.67
1388 1399 6.049149 GGAAGATCGGTGAGATATTTGACAA 58.951 40.000 0.00 0.00 40.52 3.18
1420 1434 8.405531 ACCGTTTGAATATTGATTTGGATACTG 58.594 33.333 0.00 0.00 37.61 2.74
1437 1451 1.160137 CTGGTGTTCTAGGCAAGTGC 58.840 55.000 0.00 0.00 41.14 4.40
1442 1456 0.519077 GTTCTAGGCAAGTGCTGTGC 59.481 55.000 2.85 0.00 41.70 4.57
1522 1536 6.322456 TGTTGTCATTGTTGGTTTTGAGGATA 59.678 34.615 0.00 0.00 0.00 2.59
1638 1655 5.838529 TCACTCGTCAGAAAAATCTACACA 58.161 37.500 0.00 0.00 0.00 3.72
1723 1740 4.454504 AGGCCGTTGATTTACTAACAAGTG 59.545 41.667 0.00 0.00 0.00 3.16
1768 1797 4.760204 CCAGAGTTGGTTTTAATCTCCGTT 59.240 41.667 0.00 0.00 39.79 4.44
2258 2287 1.608109 TCGCAGTTACAACGACCTACA 59.392 47.619 0.00 0.00 0.00 2.74
2262 2291 3.427863 GCAGTTACAACGACCTACAAGAC 59.572 47.826 0.00 0.00 0.00 3.01
2547 2576 3.033368 AGAGAAGACGGCTTTCTTGAC 57.967 47.619 4.21 0.00 35.90 3.18
2596 2673 5.931724 GCTTCCTCTCTCTTTTCATATAGCC 59.068 44.000 0.00 0.00 0.00 3.93
2645 2752 3.815401 AGTATGGTGTTTCTTGCTGACAC 59.185 43.478 0.00 0.00 42.14 3.67
3155 3319 4.135747 TCGCTATCATGACATGGTGAAA 57.864 40.909 15.37 0.00 0.00 2.69
3156 3320 4.512484 TCGCTATCATGACATGGTGAAAA 58.488 39.130 15.37 0.00 0.00 2.29
3161 3325 7.043854 CGCTATCATGACATGGTGAAAATTTTC 60.044 37.037 21.60 21.60 37.69 2.29
3357 3524 8.699130 TCTATCTAGAAGCTGATGTCATTGAAA 58.301 33.333 0.00 0.00 0.00 2.69
3437 3604 3.800506 GGTATAAAGGTCGAACCATGTCG 59.199 47.826 0.00 0.00 41.95 4.35
3484 3651 8.038944 TCGCCTACAAGAGTTAAAACTTGATAT 58.961 33.333 21.64 8.70 43.98 1.63
3578 3745 2.040278 CAAGGAGATGTGGAAGTTCCCA 59.960 50.000 19.42 16.03 35.03 4.37
3580 3747 2.307098 AGGAGATGTGGAAGTTCCCAAG 59.693 50.000 19.42 0.00 38.06 3.61
3623 3790 7.977853 CCATCCCTCAAGAATTTGAAACTAATG 59.022 37.037 0.00 0.00 42.48 1.90
3692 3859 1.202463 CGGAGAGGATGCAAGGTACTG 60.202 57.143 0.00 0.00 40.86 2.74
3693 3860 1.834263 GGAGAGGATGCAAGGTACTGT 59.166 52.381 0.00 0.00 40.86 3.55
3694 3861 3.031736 GGAGAGGATGCAAGGTACTGTA 58.968 50.000 0.00 0.00 40.86 2.74
3714 3881 4.408921 TGTAGCTTACTATGCCCTCATGTT 59.591 41.667 0.00 0.00 34.22 2.71
3718 3885 4.513318 GCTTACTATGCCCTCATGTTCTTC 59.487 45.833 0.00 0.00 34.22 2.87
3719 3886 5.686124 GCTTACTATGCCCTCATGTTCTTCT 60.686 44.000 0.00 0.00 34.22 2.85
3720 3887 4.851639 ACTATGCCCTCATGTTCTTCTT 57.148 40.909 0.00 0.00 34.22 2.52
3723 3890 6.721318 ACTATGCCCTCATGTTCTTCTTTAA 58.279 36.000 0.00 0.00 34.22 1.52
3759 3926 5.779529 TTACGGTCAGATATTACAGTCCC 57.220 43.478 0.00 0.00 0.00 4.46
3777 3946 6.070653 ACAGTCCCCGTATATTTTCAGTACAA 60.071 38.462 0.00 0.00 0.00 2.41
3778 3947 6.479001 CAGTCCCCGTATATTTTCAGTACAAG 59.521 42.308 0.00 0.00 0.00 3.16
3779 3948 5.756833 GTCCCCGTATATTTTCAGTACAAGG 59.243 44.000 0.00 0.00 0.00 3.61
3780 3949 5.662208 TCCCCGTATATTTTCAGTACAAGGA 59.338 40.000 0.00 0.00 0.00 3.36
3781 3950 5.756833 CCCCGTATATTTTCAGTACAAGGAC 59.243 44.000 0.00 0.00 0.00 3.85
3782 3951 5.756833 CCCGTATATTTTCAGTACAAGGACC 59.243 44.000 0.00 0.00 0.00 4.46
3783 3952 5.461078 CCGTATATTTTCAGTACAAGGACCG 59.539 44.000 0.00 0.00 0.00 4.79
3784 3953 6.267817 CGTATATTTTCAGTACAAGGACCGA 58.732 40.000 0.00 0.00 0.00 4.69
3785 3954 6.417044 CGTATATTTTCAGTACAAGGACCGAG 59.583 42.308 0.00 0.00 0.00 4.63
3786 3955 4.884668 ATTTTCAGTACAAGGACCGAGA 57.115 40.909 0.00 0.00 0.00 4.04
3787 3956 4.884668 TTTTCAGTACAAGGACCGAGAT 57.115 40.909 0.00 0.00 0.00 2.75
3788 3957 5.988310 TTTTCAGTACAAGGACCGAGATA 57.012 39.130 0.00 0.00 0.00 1.98
3789 3958 4.978083 TTCAGTACAAGGACCGAGATAC 57.022 45.455 0.00 0.00 0.00 2.24
3790 3959 4.232188 TCAGTACAAGGACCGAGATACT 57.768 45.455 0.00 0.00 0.00 2.12
3791 3960 4.197750 TCAGTACAAGGACCGAGATACTC 58.802 47.826 0.00 0.00 0.00 2.59
3792 3961 3.945921 CAGTACAAGGACCGAGATACTCA 59.054 47.826 0.00 0.00 0.00 3.41
3793 3962 4.580995 CAGTACAAGGACCGAGATACTCAT 59.419 45.833 0.00 0.00 0.00 2.90
3794 3963 5.763698 CAGTACAAGGACCGAGATACTCATA 59.236 44.000 0.00 0.00 0.00 2.15
3795 3964 6.262496 CAGTACAAGGACCGAGATACTCATAA 59.738 42.308 0.00 0.00 0.00 1.90
3796 3965 7.005296 AGTACAAGGACCGAGATACTCATAAT 58.995 38.462 0.00 0.00 0.00 1.28
3797 3966 8.162085 AGTACAAGGACCGAGATACTCATAATA 58.838 37.037 0.00 0.00 0.00 0.98
3798 3967 7.834881 ACAAGGACCGAGATACTCATAATAA 57.165 36.000 0.00 0.00 0.00 1.40
3833 4002 4.464069 ACTTATCTGTGACTTGCTCTCC 57.536 45.455 0.00 0.00 0.00 3.71
3871 4040 5.782047 TGCTTGTTTGGAATGATGGTTTAG 58.218 37.500 0.00 0.00 0.00 1.85
3875 4044 7.147915 GCTTGTTTGGAATGATGGTTTAGGATA 60.148 37.037 0.00 0.00 0.00 2.59
3881 4050 7.410174 TGGAATGATGGTTTAGGATAAACAGT 58.590 34.615 12.91 2.72 32.04 3.55
3888 4057 4.320641 GGTTTAGGATAAACAGTTTGCGCA 60.321 41.667 5.66 5.66 32.04 6.09
3897 4066 2.285083 ACAGTTTGCGCACTCAAGTTA 58.715 42.857 11.12 0.00 0.00 2.24
3932 4102 3.586470 TTCCTTGCAGGTGGAACTTTA 57.414 42.857 12.06 0.00 37.42 1.85
3948 4118 6.017687 TGGAACTTTAAAGAAGGTTTACGAGC 60.018 38.462 21.92 0.00 35.19 5.03
3949 4119 6.204301 GGAACTTTAAAGAAGGTTTACGAGCT 59.796 38.462 21.92 0.00 35.19 4.09
3974 4144 4.431416 TGCTGGTGGAACTTTAAGAAGA 57.569 40.909 0.00 0.00 36.69 2.87
3992 4162 1.480954 AGATTTACGAGTGGCGGACAT 59.519 47.619 0.00 0.00 46.49 3.06
4008 4178 7.115947 GTGGCGGACATGTCTAAGTATTATTAC 59.884 40.741 24.50 3.09 0.00 1.89
4009 4179 7.014905 TGGCGGACATGTCTAAGTATTATTACT 59.985 37.037 24.50 0.00 40.48 2.24
4010 4180 8.517878 GGCGGACATGTCTAAGTATTATTACTA 58.482 37.037 24.50 0.00 37.70 1.82
4011 4181 9.339492 GCGGACATGTCTAAGTATTATTACTAC 57.661 37.037 24.50 1.68 37.70 2.73
4052 4227 3.494254 TCCCCTTGTTGCGGTGGT 61.494 61.111 0.00 0.00 0.00 4.16
4067 4242 2.546795 CGGTGGTATGAGAGAAGGATGC 60.547 54.545 0.00 0.00 0.00 3.91
4089 4264 7.707624 TGCATCCTTTCTGAATGTATCTTTT 57.292 32.000 0.00 0.00 0.00 2.27
4095 4270 5.560966 TTCTGAATGTATCTTTTTCGCCC 57.439 39.130 0.00 0.00 0.00 6.13
4096 4271 4.843728 TCTGAATGTATCTTTTTCGCCCT 58.156 39.130 0.00 0.00 0.00 5.19
4097 4272 5.253330 TCTGAATGTATCTTTTTCGCCCTT 58.747 37.500 0.00 0.00 0.00 3.95
4098 4273 5.354234 TCTGAATGTATCTTTTTCGCCCTTC 59.646 40.000 0.00 0.00 0.00 3.46
4099 4274 4.398044 TGAATGTATCTTTTTCGCCCTTCC 59.602 41.667 0.00 0.00 0.00 3.46
4100 4275 3.713826 TGTATCTTTTTCGCCCTTCCT 57.286 42.857 0.00 0.00 0.00 3.36
4101 4276 3.606687 TGTATCTTTTTCGCCCTTCCTC 58.393 45.455 0.00 0.00 0.00 3.71
4114 4289 3.385755 GCCCTTCCTCAAATTATGTGCAT 59.614 43.478 0.00 0.00 0.00 3.96
4115 4290 4.584325 GCCCTTCCTCAAATTATGTGCATA 59.416 41.667 0.00 0.00 0.00 3.14
4116 4291 5.244626 GCCCTTCCTCAAATTATGTGCATAT 59.755 40.000 0.31 0.31 0.00 1.78
4177 4354 1.067354 ACGTCTAACCACCGGTGAATC 60.067 52.381 36.07 16.92 35.34 2.52
4185 4362 3.309296 ACCACCGGTGAATCTAGATGAT 58.691 45.455 36.07 3.88 32.98 2.45
4186 4363 3.070159 ACCACCGGTGAATCTAGATGATG 59.930 47.826 36.07 15.97 32.60 3.07
4187 4364 3.321968 CCACCGGTGAATCTAGATGATGA 59.678 47.826 36.07 0.00 35.21 2.92
4192 4369 4.388165 CGGTGAATCTAGATGATGATGTGC 59.612 45.833 5.86 0.00 35.21 4.57
4250 4427 5.667539 TTGATTCCCACAAACAAAACTGA 57.332 34.783 0.00 0.00 0.00 3.41
4260 4437 7.279758 CCCACAAACAAAACTGATGTGTTATTT 59.720 33.333 0.00 0.00 39.70 1.40
4261 4438 9.307121 CCACAAACAAAACTGATGTGTTATTTA 57.693 29.630 0.00 0.00 39.70 1.40
4341 4518 4.261741 GCAATGTCAGTCAGTTTGGTTCAT 60.262 41.667 0.00 0.00 0.00 2.57
4394 4571 1.481242 CCCAGGTTCTGCTTCCCTTTT 60.481 52.381 0.00 0.00 0.00 2.27
4399 4576 1.618837 GTTCTGCTTCCCTTTTTCCCC 59.381 52.381 0.00 0.00 0.00 4.81
4456 4633 0.798776 GTTGTATTCTGCACGCAGCT 59.201 50.000 14.25 6.66 45.94 4.24
4460 4637 1.999735 GTATTCTGCACGCAGCTACAA 59.000 47.619 14.25 3.88 45.94 2.41
4461 4638 1.522668 ATTCTGCACGCAGCTACAAA 58.477 45.000 14.25 3.51 45.94 2.83
4462 4639 0.586319 TTCTGCACGCAGCTACAAAC 59.414 50.000 14.25 0.00 45.94 2.93
4463 4640 0.249868 TCTGCACGCAGCTACAAACT 60.250 50.000 14.25 0.00 45.94 2.66
4465 4642 2.002586 CTGCACGCAGCTACAAACTAT 58.997 47.619 6.03 0.00 45.94 2.12
4466 4643 3.119280 TCTGCACGCAGCTACAAACTATA 60.119 43.478 14.25 0.00 45.94 1.31
4467 4644 2.927477 TGCACGCAGCTACAAACTATAC 59.073 45.455 2.02 0.00 45.94 1.47
4469 4646 3.369756 GCACGCAGCTACAAACTATACAA 59.630 43.478 0.00 0.00 41.15 2.41
4472 4649 3.855379 CGCAGCTACAAACTATACAACGA 59.145 43.478 0.00 0.00 0.00 3.85
4473 4650 4.259292 CGCAGCTACAAACTATACAACGAC 60.259 45.833 0.00 0.00 0.00 4.34
4474 4651 4.624024 GCAGCTACAAACTATACAACGACA 59.376 41.667 0.00 0.00 0.00 4.35
4475 4652 5.220228 GCAGCTACAAACTATACAACGACAG 60.220 44.000 0.00 0.00 0.00 3.51
4476 4653 4.863131 AGCTACAAACTATACAACGACAGC 59.137 41.667 0.00 0.00 0.00 4.40
4477 4654 4.624024 GCTACAAACTATACAACGACAGCA 59.376 41.667 0.00 0.00 0.00 4.41
4478 4655 5.119588 GCTACAAACTATACAACGACAGCAA 59.880 40.000 0.00 0.00 0.00 3.91
4479 4656 5.994887 ACAAACTATACAACGACAGCAAA 57.005 34.783 0.00 0.00 0.00 3.68
4480 4657 6.366315 ACAAACTATACAACGACAGCAAAA 57.634 33.333 0.00 0.00 0.00 2.44
4481 4658 6.787225 ACAAACTATACAACGACAGCAAAAA 58.213 32.000 0.00 0.00 0.00 1.94
4523 4700 8.081633 TCCACAGTCAACTAATTTTAAGCATTG 58.918 33.333 0.00 0.00 0.00 2.82
4524 4701 7.867403 CCACAGTCAACTAATTTTAAGCATTGT 59.133 33.333 0.00 0.00 0.00 2.71
4540 4717 9.865321 TTAAGCATTGTACTACTCGTAGATTTT 57.135 29.630 10.83 0.00 36.97 1.82
4564 4741 2.879826 GTGTAACATTGCAGGGATTGC 58.120 47.619 0.00 0.00 45.53 3.56
4573 4750 1.530771 CAGGGATTGCAGAGGAGGG 59.469 63.158 0.00 0.00 0.00 4.30
4574 4751 1.695597 AGGGATTGCAGAGGAGGGG 60.696 63.158 0.00 0.00 0.00 4.79
4575 4752 2.761465 GGGATTGCAGAGGAGGGGG 61.761 68.421 0.00 0.00 0.00 5.40
4599 4776 4.996976 CGGAGCAGTAGCAACAGT 57.003 55.556 0.00 0.00 45.49 3.55
4601 4778 2.363788 CGGAGCAGTAGCAACAGTAA 57.636 50.000 0.00 0.00 45.49 2.24
4602 4779 2.263077 CGGAGCAGTAGCAACAGTAAG 58.737 52.381 0.00 0.00 45.49 2.34
4603 4780 2.352814 CGGAGCAGTAGCAACAGTAAGT 60.353 50.000 0.00 0.00 45.49 2.24
4604 4781 3.119602 CGGAGCAGTAGCAACAGTAAGTA 60.120 47.826 0.00 0.00 45.49 2.24
4605 4782 4.425520 GGAGCAGTAGCAACAGTAAGTAG 58.574 47.826 0.00 0.00 45.49 2.57
4606 4783 4.082136 GGAGCAGTAGCAACAGTAAGTAGT 60.082 45.833 0.00 0.00 45.49 2.73
4607 4784 5.125097 GGAGCAGTAGCAACAGTAAGTAGTA 59.875 44.000 0.00 0.00 45.49 1.82
4608 4785 5.952033 AGCAGTAGCAACAGTAAGTAGTAC 58.048 41.667 0.00 0.00 45.49 2.73
4609 4786 5.100943 GCAGTAGCAACAGTAAGTAGTACC 58.899 45.833 0.00 0.00 41.58 3.34
4610 4787 5.330295 CAGTAGCAACAGTAAGTAGTACCG 58.670 45.833 0.00 0.00 32.58 4.02
4611 4788 5.122869 CAGTAGCAACAGTAAGTAGTACCGA 59.877 44.000 0.00 0.00 32.58 4.69
4612 4789 4.431661 AGCAACAGTAAGTAGTACCGAC 57.568 45.455 0.00 0.00 32.58 4.79
4613 4790 4.077822 AGCAACAGTAAGTAGTACCGACT 58.922 43.478 0.00 0.00 39.92 4.18
4614 4791 5.248640 AGCAACAGTAAGTAGTACCGACTA 58.751 41.667 4.76 0.00 37.10 2.59
4626 4803 2.799371 CGACTACCGGGAGCTCAC 59.201 66.667 15.67 11.90 33.91 3.51
4627 4804 2.044555 CGACTACCGGGAGCTCACA 61.045 63.158 15.67 0.00 33.91 3.58
4628 4805 1.810532 GACTACCGGGAGCTCACAG 59.189 63.158 15.67 7.33 0.00 3.66
4629 4806 2.286127 GACTACCGGGAGCTCACAGC 62.286 65.000 15.67 0.00 42.84 4.40
4638 4815 2.047844 GCTCACAGCTTCCGCAGA 60.048 61.111 0.00 0.00 38.45 4.26
4639 4816 1.449246 GCTCACAGCTTCCGCAGAT 60.449 57.895 0.00 0.00 38.45 2.90
4640 4817 1.427592 GCTCACAGCTTCCGCAGATC 61.428 60.000 0.00 0.00 38.45 2.75
4641 4818 0.108472 CTCACAGCTTCCGCAGATCA 60.108 55.000 0.00 0.00 39.10 2.92
4642 4819 0.321346 TCACAGCTTCCGCAGATCAA 59.679 50.000 0.00 0.00 39.10 2.57
4643 4820 1.159285 CACAGCTTCCGCAGATCAAA 58.841 50.000 0.00 0.00 39.10 2.69
4644 4821 1.741706 CACAGCTTCCGCAGATCAAAT 59.258 47.619 0.00 0.00 39.10 2.32
4645 4822 2.938451 CACAGCTTCCGCAGATCAAATA 59.062 45.455 0.00 0.00 39.10 1.40
4646 4823 2.939103 ACAGCTTCCGCAGATCAAATAC 59.061 45.455 0.00 0.00 39.10 1.89
4647 4824 2.033407 CAGCTTCCGCAGATCAAATACG 60.033 50.000 0.00 0.00 39.10 3.06
4648 4825 1.933853 GCTTCCGCAGATCAAATACGT 59.066 47.619 0.00 0.00 35.78 3.57
4649 4826 2.033662 GCTTCCGCAGATCAAATACGTC 60.034 50.000 0.00 0.00 35.78 4.34
4650 4827 1.835121 TCCGCAGATCAAATACGTCG 58.165 50.000 0.00 0.00 0.00 5.12
4651 4828 0.852777 CCGCAGATCAAATACGTCGG 59.147 55.000 0.00 0.00 0.00 4.79
4652 4829 0.229753 CGCAGATCAAATACGTCGGC 59.770 55.000 0.00 0.00 0.00 5.54
4653 4830 0.229753 GCAGATCAAATACGTCGGCG 59.770 55.000 8.42 8.42 44.93 6.46
4654 4831 1.835121 CAGATCAAATACGTCGGCGA 58.165 50.000 20.03 4.99 42.00 5.54
4655 4832 1.781429 CAGATCAAATACGTCGGCGAG 59.219 52.381 20.03 7.37 42.00 5.03
4656 4833 1.129326 GATCAAATACGTCGGCGAGG 58.871 55.000 26.02 26.02 42.00 4.63
4657 4834 0.874607 ATCAAATACGTCGGCGAGGC 60.875 55.000 27.32 8.50 42.00 4.70
4658 4835 1.807981 CAAATACGTCGGCGAGGCA 60.808 57.895 27.32 17.03 42.00 4.75
4659 4836 1.079681 AAATACGTCGGCGAGGCAA 60.080 52.632 27.32 17.10 42.00 4.52
4660 4837 0.671163 AAATACGTCGGCGAGGCAAA 60.671 50.000 27.32 14.69 42.00 3.68
4661 4838 1.082117 AATACGTCGGCGAGGCAAAG 61.082 55.000 27.32 9.70 42.00 2.77
4662 4839 2.901051 ATACGTCGGCGAGGCAAAGG 62.901 60.000 27.32 5.86 42.00 3.11
4663 4840 4.735132 CGTCGGCGAGGCAAAGGA 62.735 66.667 17.07 0.00 41.33 3.36
4664 4841 2.125106 GTCGGCGAGGCAAAGGAT 60.125 61.111 11.20 0.00 0.00 3.24
4665 4842 2.125147 TCGGCGAGGCAAAGGATG 60.125 61.111 4.99 0.00 0.00 3.51
4666 4843 3.204827 CGGCGAGGCAAAGGATGG 61.205 66.667 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.935208 ACTCTAGGGACAACTGTAAAAATGTC 59.065 38.462 0.00 1.82 41.06 3.06
28 29 7.074653 TGACTCTAGGGACAACTGTAAAAAT 57.925 36.000 0.00 0.00 0.00 1.82
29 30 6.488769 TGACTCTAGGGACAACTGTAAAAA 57.511 37.500 0.00 0.00 0.00 1.94
42 43 2.233922 ACACGTGGATTTGACTCTAGGG 59.766 50.000 21.57 0.00 0.00 3.53
43 44 3.056821 TCACACGTGGATTTGACTCTAGG 60.057 47.826 21.57 0.00 0.00 3.02
63 64 3.951680 GACCACCTGTTTTTCCTCTTTCA 59.048 43.478 0.00 0.00 0.00 2.69
77 78 6.708054 GGATCAGTTTTATATCTGACCACCTG 59.292 42.308 0.00 0.00 42.30 4.00
93 96 4.021368 CCGGGAATATACGAGGATCAGTTT 60.021 45.833 0.00 0.00 33.17 2.66
96 99 3.090037 ACCGGGAATATACGAGGATCAG 58.910 50.000 6.32 0.00 33.17 2.90
116 119 1.265635 TGGTGCTGCGTTCAAATGTAC 59.734 47.619 0.00 0.00 0.00 2.90
129 132 0.179137 TCTATTCGTCGCTGGTGCTG 60.179 55.000 0.00 0.00 36.97 4.41
130 133 0.179134 GTCTATTCGTCGCTGGTGCT 60.179 55.000 0.00 0.00 36.97 4.40
171 174 0.316204 ACACATTTTCCTGCTGCAGC 59.684 50.000 31.89 31.89 42.50 5.25
180 183 4.668177 CGTGGTCGTCATAACACATTTTCC 60.668 45.833 0.00 0.00 33.62 3.13
186 189 2.601804 CATCGTGGTCGTCATAACACA 58.398 47.619 0.00 0.00 38.33 3.72
200 203 0.384230 GCGTTGTTGTCACCATCGTG 60.384 55.000 3.28 0.00 41.72 4.35
206 209 0.234884 GTAGCAGCGTTGTTGTCACC 59.765 55.000 0.00 0.00 0.00 4.02
222 225 1.460743 CACAATGTGTCGGCTGTGTAG 59.539 52.381 5.00 0.00 35.52 2.74
223 226 1.507562 CACAATGTGTCGGCTGTGTA 58.492 50.000 5.00 0.00 35.52 2.90
224 227 1.165907 CCACAATGTGTCGGCTGTGT 61.166 55.000 12.79 0.00 37.97 3.72
225 228 0.884259 TCCACAATGTGTCGGCTGTG 60.884 55.000 12.79 0.45 39.10 3.66
226 229 0.884704 GTCCACAATGTGTCGGCTGT 60.885 55.000 12.79 0.00 0.00 4.40
227 230 1.868997 GTCCACAATGTGTCGGCTG 59.131 57.895 12.79 0.00 0.00 4.85
228 231 1.667830 CGTCCACAATGTGTCGGCT 60.668 57.895 12.79 0.00 0.00 5.52
229 232 1.019278 ATCGTCCACAATGTGTCGGC 61.019 55.000 20.85 6.34 32.99 5.54
230 233 1.438651 AATCGTCCACAATGTGTCGG 58.561 50.000 20.85 5.37 32.99 4.79
231 234 2.412716 CCAAATCGTCCACAATGTGTCG 60.413 50.000 12.79 15.45 33.24 4.35
232 235 2.811431 TCCAAATCGTCCACAATGTGTC 59.189 45.455 12.79 4.39 0.00 3.67
233 236 2.857483 TCCAAATCGTCCACAATGTGT 58.143 42.857 12.79 0.00 0.00 3.72
234 237 3.913548 TTCCAAATCGTCCACAATGTG 57.086 42.857 6.37 6.37 0.00 3.21
235 238 3.126858 CGATTCCAAATCGTCCACAATGT 59.873 43.478 12.63 0.00 36.84 2.71
236 239 3.373748 TCGATTCCAAATCGTCCACAATG 59.626 43.478 18.38 0.00 41.77 2.82
237 240 3.605634 TCGATTCCAAATCGTCCACAAT 58.394 40.909 18.38 0.00 41.77 2.71
238 241 3.046968 TCGATTCCAAATCGTCCACAA 57.953 42.857 18.38 0.00 41.77 3.33
239 242 2.753055 TCGATTCCAAATCGTCCACA 57.247 45.000 18.38 0.35 41.77 4.17
240 243 2.286418 GCATCGATTCCAAATCGTCCAC 60.286 50.000 18.38 6.66 41.77 4.02
241 244 1.939934 GCATCGATTCCAAATCGTCCA 59.060 47.619 18.38 3.81 41.77 4.02
242 245 1.939934 TGCATCGATTCCAAATCGTCC 59.060 47.619 18.38 10.44 41.77 4.79
243 246 2.600792 GCTGCATCGATTCCAAATCGTC 60.601 50.000 18.38 11.22 41.77 4.20
244 247 1.331756 GCTGCATCGATTCCAAATCGT 59.668 47.619 18.38 6.64 41.77 3.73
245 248 1.658373 CGCTGCATCGATTCCAAATCG 60.658 52.381 14.25 14.25 42.38 3.34
246 249 1.923316 GCGCTGCATCGATTCCAAATC 60.923 52.381 15.14 0.00 0.00 2.17
247 250 0.029834 GCGCTGCATCGATTCCAAAT 59.970 50.000 15.14 0.00 0.00 2.32
248 251 1.304509 TGCGCTGCATCGATTCCAAA 61.305 50.000 15.14 0.00 31.71 3.28
249 252 1.744741 TGCGCTGCATCGATTCCAA 60.745 52.632 15.14 0.00 31.71 3.53
250 253 2.125188 TGCGCTGCATCGATTCCA 60.125 55.556 15.14 0.00 31.71 3.53
259 262 2.752640 ATGGCTTGATGCGCTGCA 60.753 55.556 9.73 3.40 44.86 4.41
260 263 2.025727 GATGGCTTGATGCGCTGC 59.974 61.111 9.73 5.17 44.05 5.25
261 264 1.452953 ATGGATGGCTTGATGCGCTG 61.453 55.000 9.73 0.00 44.05 5.18
262 265 1.152819 ATGGATGGCTTGATGCGCT 60.153 52.632 9.73 0.00 44.05 5.92
263 266 1.007734 CATGGATGGCTTGATGCGC 60.008 57.895 0.00 0.00 44.05 6.09
264 267 1.007734 GCATGGATGGCTTGATGCG 60.008 57.895 0.00 0.00 44.05 4.73
265 268 0.462375 TTGCATGGATGGCTTGATGC 59.538 50.000 0.00 0.00 41.34 3.91
266 269 3.469008 AATTGCATGGATGGCTTGATG 57.531 42.857 0.00 0.00 0.00 3.07
267 270 3.006537 GCTAATTGCATGGATGGCTTGAT 59.993 43.478 0.00 0.00 42.31 2.57
268 271 2.363038 GCTAATTGCATGGATGGCTTGA 59.637 45.455 0.00 0.00 42.31 3.02
269 272 2.750948 GCTAATTGCATGGATGGCTTG 58.249 47.619 0.00 0.00 42.31 4.01
278 281 9.242580 GTGATGCTCACTTTTGCTAATTGCATG 62.243 40.741 0.00 0.00 46.41 4.06
279 282 7.337333 GTGATGCTCACTTTTGCTAATTGCAT 61.337 38.462 8.50 0.00 46.41 3.96
280 283 6.074659 GTGATGCTCACTTTTGCTAATTGCA 61.075 40.000 8.50 0.00 45.97 4.08
281 284 4.325472 GTGATGCTCACTTTTGCTAATTGC 59.675 41.667 8.50 0.00 43.73 3.56
282 285 4.860907 GGTGATGCTCACTTTTGCTAATTG 59.139 41.667 13.59 0.00 46.19 2.32
283 286 4.379813 CGGTGATGCTCACTTTTGCTAATT 60.380 41.667 13.59 0.00 46.19 1.40
284 287 3.127548 CGGTGATGCTCACTTTTGCTAAT 59.872 43.478 13.59 0.00 46.19 1.73
285 288 2.483877 CGGTGATGCTCACTTTTGCTAA 59.516 45.455 13.59 0.00 46.19 3.09
286 289 2.076100 CGGTGATGCTCACTTTTGCTA 58.924 47.619 13.59 0.00 46.19 3.49
287 290 0.877071 CGGTGATGCTCACTTTTGCT 59.123 50.000 13.59 0.00 46.19 3.91
288 291 0.593128 ACGGTGATGCTCACTTTTGC 59.407 50.000 13.59 0.00 46.19 3.68
289 292 1.197721 GGACGGTGATGCTCACTTTTG 59.802 52.381 13.59 6.57 46.19 2.44
290 293 1.202758 TGGACGGTGATGCTCACTTTT 60.203 47.619 13.59 2.17 46.19 2.27
291 294 0.396435 TGGACGGTGATGCTCACTTT 59.604 50.000 13.59 4.07 46.19 2.66
292 295 0.320771 GTGGACGGTGATGCTCACTT 60.321 55.000 13.59 4.34 46.19 3.16
293 296 1.188219 AGTGGACGGTGATGCTCACT 61.188 55.000 13.59 0.00 46.19 3.41
294 297 0.737715 GAGTGGACGGTGATGCTCAC 60.738 60.000 7.52 7.52 46.23 3.51
295 298 1.591703 GAGTGGACGGTGATGCTCA 59.408 57.895 0.00 0.00 0.00 4.26
296 299 1.153549 GGAGTGGACGGTGATGCTC 60.154 63.158 0.00 0.00 0.00 4.26
297 300 1.608717 GAGGAGTGGACGGTGATGCT 61.609 60.000 0.00 0.00 0.00 3.79
298 301 1.153549 GAGGAGTGGACGGTGATGC 60.154 63.158 0.00 0.00 0.00 3.91
299 302 1.517832 GGAGGAGTGGACGGTGATG 59.482 63.158 0.00 0.00 0.00 3.07
300 303 1.686110 GGGAGGAGTGGACGGTGAT 60.686 63.158 0.00 0.00 0.00 3.06
301 304 2.283676 GGGAGGAGTGGACGGTGA 60.284 66.667 0.00 0.00 0.00 4.02
302 305 3.760035 CGGGAGGAGTGGACGGTG 61.760 72.222 0.00 0.00 0.00 4.94
303 306 4.296729 ACGGGAGGAGTGGACGGT 62.297 66.667 0.00 0.00 0.00 4.83
304 307 3.450115 GACGGGAGGAGTGGACGG 61.450 72.222 0.00 0.00 0.00 4.79
305 308 3.812019 CGACGGGAGGAGTGGACG 61.812 72.222 0.00 0.00 0.00 4.79
306 309 2.675772 ACGACGGGAGGAGTGGAC 60.676 66.667 0.00 0.00 0.00 4.02
307 310 2.360852 GACGACGGGAGGAGTGGA 60.361 66.667 0.00 0.00 0.00 4.02
308 311 3.450115 GGACGACGGGAGGAGTGG 61.450 72.222 0.00 0.00 0.00 4.00
309 312 2.675423 TGGACGACGGGAGGAGTG 60.675 66.667 0.00 0.00 0.00 3.51
310 313 2.675772 GTGGACGACGGGAGGAGT 60.676 66.667 0.00 0.00 0.00 3.85
311 314 2.675423 TGTGGACGACGGGAGGAG 60.675 66.667 0.00 0.00 0.00 3.69
312 315 2.675423 CTGTGGACGACGGGAGGA 60.675 66.667 0.00 0.00 0.00 3.71
313 316 2.488087 GAACTGTGGACGACGGGAGG 62.488 65.000 0.00 0.00 34.90 4.30
314 317 1.080705 GAACTGTGGACGACGGGAG 60.081 63.158 0.00 0.00 34.90 4.30
315 318 2.911484 CGAACTGTGGACGACGGGA 61.911 63.158 0.00 0.00 34.90 5.14
316 319 2.430244 CGAACTGTGGACGACGGG 60.430 66.667 0.00 0.00 34.90 5.28
317 320 2.430244 CCGAACTGTGGACGACGG 60.430 66.667 0.00 0.00 36.94 4.79
318 321 3.103911 GCCGAACTGTGGACGACG 61.104 66.667 0.00 0.00 0.00 5.12
319 322 2.737376 GGCCGAACTGTGGACGAC 60.737 66.667 0.00 0.00 0.00 4.34
340 343 0.039798 TTGCTGTACGGACGACAGTC 60.040 55.000 5.68 13.57 45.09 3.51
341 344 0.601558 ATTGCTGTACGGACGACAGT 59.398 50.000 5.68 0.00 45.09 3.55
342 345 1.710013 AATTGCTGTACGGACGACAG 58.290 50.000 5.68 15.15 45.90 3.51
343 346 2.063266 GAAATTGCTGTACGGACGACA 58.937 47.619 5.68 0.00 0.00 4.35
344 347 1.058695 CGAAATTGCTGTACGGACGAC 59.941 52.381 5.68 0.00 0.00 4.34
345 348 1.336148 ACGAAATTGCTGTACGGACGA 60.336 47.619 5.68 0.00 0.00 4.20
346 349 1.065358 ACGAAATTGCTGTACGGACG 58.935 50.000 5.68 3.50 0.00 4.79
347 350 1.127951 CCACGAAATTGCTGTACGGAC 59.872 52.381 5.68 0.00 0.00 4.79
348 351 1.270412 ACCACGAAATTGCTGTACGGA 60.270 47.619 5.68 0.00 0.00 4.69
349 352 1.136085 CACCACGAAATTGCTGTACGG 60.136 52.381 0.00 0.00 0.00 4.02
350 353 1.795872 TCACCACGAAATTGCTGTACG 59.204 47.619 0.00 0.00 0.00 3.67
351 354 2.546368 TGTCACCACGAAATTGCTGTAC 59.454 45.455 0.00 0.00 0.00 2.90
352 355 2.839975 TGTCACCACGAAATTGCTGTA 58.160 42.857 0.00 0.00 0.00 2.74
353 356 1.674359 TGTCACCACGAAATTGCTGT 58.326 45.000 0.00 0.00 0.00 4.40
354 357 2.772568 TTGTCACCACGAAATTGCTG 57.227 45.000 0.00 0.00 0.00 4.41
355 358 2.948979 TCTTTGTCACCACGAAATTGCT 59.051 40.909 0.00 0.00 0.00 3.91
356 359 3.347958 TCTTTGTCACCACGAAATTGC 57.652 42.857 0.00 0.00 0.00 3.56
357 360 4.920376 ACTTCTTTGTCACCACGAAATTG 58.080 39.130 0.00 0.00 0.00 2.32
358 361 4.036380 GGACTTCTTTGTCACCACGAAATT 59.964 41.667 0.00 0.00 38.61 1.82
359 362 3.564225 GGACTTCTTTGTCACCACGAAAT 59.436 43.478 0.00 0.00 38.61 2.17
360 363 2.940410 GGACTTCTTTGTCACCACGAAA 59.060 45.455 0.00 0.00 38.61 3.46
361 364 2.557317 GGACTTCTTTGTCACCACGAA 58.443 47.619 0.00 0.00 38.61 3.85
362 365 1.537348 CGGACTTCTTTGTCACCACGA 60.537 52.381 0.00 0.00 38.61 4.35
363 366 0.859232 CGGACTTCTTTGTCACCACG 59.141 55.000 0.00 0.00 38.61 4.94
364 367 1.597663 CACGGACTTCTTTGTCACCAC 59.402 52.381 0.00 0.00 38.61 4.16
365 368 1.948104 CACGGACTTCTTTGTCACCA 58.052 50.000 0.00 0.00 38.61 4.17
366 369 0.586802 GCACGGACTTCTTTGTCACC 59.413 55.000 0.00 0.00 38.61 4.02
367 370 1.261619 CTGCACGGACTTCTTTGTCAC 59.738 52.381 0.00 0.00 38.61 3.67
368 371 1.138069 TCTGCACGGACTTCTTTGTCA 59.862 47.619 0.00 0.00 38.61 3.58
369 372 1.865865 TCTGCACGGACTTCTTTGTC 58.134 50.000 0.00 0.00 36.31 3.18
370 373 2.550830 ATCTGCACGGACTTCTTTGT 57.449 45.000 0.00 0.00 0.00 2.83
371 374 2.807967 TGAATCTGCACGGACTTCTTTG 59.192 45.455 0.00 0.00 0.00 2.77
382 385 2.410730 GCAATGCTTGTTGAATCTGCAC 59.589 45.455 0.00 0.00 36.44 4.57
452 455 2.027625 GCGAAGGACGAACTGGTGG 61.028 63.158 0.00 0.00 45.77 4.61
477 480 0.679505 TCAGGAAAGACCCGTGACTG 59.320 55.000 0.00 0.00 40.05 3.51
478 481 1.645710 ATCAGGAAAGACCCGTGACT 58.354 50.000 0.00 0.00 40.05 3.41
479 482 3.604875 TTATCAGGAAAGACCCGTGAC 57.395 47.619 0.00 0.00 40.05 3.67
480 483 3.835978 TCTTTATCAGGAAAGACCCGTGA 59.164 43.478 0.00 0.00 39.87 4.35
481 484 4.202245 TCTTTATCAGGAAAGACCCGTG 57.798 45.455 0.00 0.00 39.87 4.94
483 486 5.449177 GCATTTCTTTATCAGGAAAGACCCG 60.449 44.000 0.00 0.00 43.45 5.28
484 487 5.654209 AGCATTTCTTTATCAGGAAAGACCC 59.346 40.000 0.00 0.00 43.45 4.46
485 488 6.601217 AGAGCATTTCTTTATCAGGAAAGACC 59.399 38.462 0.00 0.00 43.45 3.85
486 489 7.470900 CAGAGCATTTCTTTATCAGGAAAGAC 58.529 38.462 0.00 0.00 43.45 3.01
487 490 6.094603 GCAGAGCATTTCTTTATCAGGAAAGA 59.905 38.462 0.00 0.00 42.37 2.52
488 491 6.127814 TGCAGAGCATTTCTTTATCAGGAAAG 60.128 38.462 0.00 0.00 35.37 2.62
489 492 5.711506 TGCAGAGCATTTCTTTATCAGGAAA 59.288 36.000 0.00 0.00 36.17 3.13
490 493 5.255687 TGCAGAGCATTTCTTTATCAGGAA 58.744 37.500 0.00 0.00 32.41 3.36
491 494 4.847198 TGCAGAGCATTTCTTTATCAGGA 58.153 39.130 0.00 0.00 32.41 3.86
492 495 5.571784 TTGCAGAGCATTTCTTTATCAGG 57.428 39.130 0.00 0.00 38.76 3.86
493 496 6.792326 TGATTGCAGAGCATTTCTTTATCAG 58.208 36.000 0.00 0.00 38.76 2.90
494 497 6.762702 TGATTGCAGAGCATTTCTTTATCA 57.237 33.333 0.00 0.00 38.76 2.15
495 498 7.008992 GTGTTGATTGCAGAGCATTTCTTTATC 59.991 37.037 0.00 0.00 38.76 1.75
496 499 6.810182 GTGTTGATTGCAGAGCATTTCTTTAT 59.190 34.615 0.00 0.00 38.76 1.40
497 500 6.151691 GTGTTGATTGCAGAGCATTTCTTTA 58.848 36.000 0.00 0.00 38.76 1.85
498 501 4.986659 GTGTTGATTGCAGAGCATTTCTTT 59.013 37.500 0.00 0.00 38.76 2.52
499 502 4.038282 TGTGTTGATTGCAGAGCATTTCTT 59.962 37.500 0.00 0.00 38.76 2.52
500 503 3.570975 TGTGTTGATTGCAGAGCATTTCT 59.429 39.130 0.00 0.00 38.76 2.52
501 504 3.671928 GTGTGTTGATTGCAGAGCATTTC 59.328 43.478 0.00 0.00 38.76 2.17
502 505 3.319972 AGTGTGTTGATTGCAGAGCATTT 59.680 39.130 0.00 0.00 38.76 2.32
503 506 2.889045 AGTGTGTTGATTGCAGAGCATT 59.111 40.909 0.00 0.00 38.76 3.56
504 507 2.511659 AGTGTGTTGATTGCAGAGCAT 58.488 42.857 0.00 0.00 38.76 3.79
505 508 1.971481 AGTGTGTTGATTGCAGAGCA 58.029 45.000 0.00 0.00 36.47 4.26
506 509 4.691860 AATAGTGTGTTGATTGCAGAGC 57.308 40.909 0.00 0.00 0.00 4.09
519 522 6.923508 TGTCTGAGTTGACAAGTAATAGTGTG 59.076 38.462 0.00 0.00 43.08 3.82
526 529 4.642445 TCGTGTCTGAGTTGACAAGTAA 57.358 40.909 9.53 0.00 46.77 2.24
540 543 8.091449 AGAGAAAAGTCTTGATATTTCGTGTCT 58.909 33.333 0.00 0.00 36.99 3.41
546 549 7.066404 GGGTGGAGAGAAAAGTCTTGATATTTC 59.934 40.741 0.00 0.00 32.80 2.17
550 553 4.844085 TGGGTGGAGAGAAAAGTCTTGATA 59.156 41.667 0.00 0.00 32.80 2.15
561 564 1.067295 ATGTTGCTGGGTGGAGAGAA 58.933 50.000 0.00 0.00 0.00 2.87
579 582 7.445707 TCATGTAAATCGTACTAGAGAGAGCAT 59.554 37.037 0.00 0.00 0.00 3.79
580 583 6.766467 TCATGTAAATCGTACTAGAGAGAGCA 59.234 38.462 0.00 0.00 0.00 4.26
582 585 8.279800 CAGTCATGTAAATCGTACTAGAGAGAG 58.720 40.741 0.00 0.00 0.00 3.20
583 586 7.226918 CCAGTCATGTAAATCGTACTAGAGAGA 59.773 40.741 0.00 0.00 0.00 3.10
584 587 7.226918 TCCAGTCATGTAAATCGTACTAGAGAG 59.773 40.741 0.00 0.00 0.00 3.20
585 588 7.052248 TCCAGTCATGTAAATCGTACTAGAGA 58.948 38.462 0.00 0.00 0.00 3.10
586 589 7.012515 ACTCCAGTCATGTAAATCGTACTAGAG 59.987 40.741 0.00 0.00 31.67 2.43
587 590 6.827251 ACTCCAGTCATGTAAATCGTACTAGA 59.173 38.462 0.00 0.00 0.00 2.43
588 591 6.913132 CACTCCAGTCATGTAAATCGTACTAG 59.087 42.308 0.00 0.00 0.00 2.57
589 592 6.183360 CCACTCCAGTCATGTAAATCGTACTA 60.183 42.308 0.00 0.00 0.00 1.82
590 593 5.394224 CCACTCCAGTCATGTAAATCGTACT 60.394 44.000 0.00 0.00 0.00 2.73
591 594 4.804139 CCACTCCAGTCATGTAAATCGTAC 59.196 45.833 0.00 0.00 0.00 3.67
592 595 4.142026 CCCACTCCAGTCATGTAAATCGTA 60.142 45.833 0.00 0.00 0.00 3.43
593 596 3.369471 CCCACTCCAGTCATGTAAATCGT 60.369 47.826 0.00 0.00 0.00 3.73
594 597 3.118775 TCCCACTCCAGTCATGTAAATCG 60.119 47.826 0.00 0.00 0.00 3.34
595 598 4.162320 TCTCCCACTCCAGTCATGTAAATC 59.838 45.833 0.00 0.00 0.00 2.17
596 599 4.104086 TCTCCCACTCCAGTCATGTAAAT 58.896 43.478 0.00 0.00 0.00 1.40
597 600 3.515502 CTCTCCCACTCCAGTCATGTAAA 59.484 47.826 0.00 0.00 0.00 2.01
598 601 3.099905 CTCTCCCACTCCAGTCATGTAA 58.900 50.000 0.00 0.00 0.00 2.41
599 602 2.311841 TCTCTCCCACTCCAGTCATGTA 59.688 50.000 0.00 0.00 0.00 2.29
600 603 1.077828 TCTCTCCCACTCCAGTCATGT 59.922 52.381 0.00 0.00 0.00 3.21
601 604 1.755959 CTCTCTCCCACTCCAGTCATG 59.244 57.143 0.00 0.00 0.00 3.07
602 605 1.964344 GCTCTCTCCCACTCCAGTCAT 60.964 57.143 0.00 0.00 0.00 3.06
603 606 0.613292 GCTCTCTCCCACTCCAGTCA 60.613 60.000 0.00 0.00 0.00 3.41
604 607 1.326951 GGCTCTCTCCCACTCCAGTC 61.327 65.000 0.00 0.00 0.00 3.51
605 608 1.305718 GGCTCTCTCCCACTCCAGT 60.306 63.158 0.00 0.00 0.00 4.00
606 609 2.063378 GGGCTCTCTCCCACTCCAG 61.063 68.421 0.00 0.00 45.82 3.86
607 610 2.039624 GGGCTCTCTCCCACTCCA 59.960 66.667 0.00 0.00 45.82 3.86
614 617 4.200283 CGTCGCTGGGCTCTCTCC 62.200 72.222 0.00 0.00 0.00 3.71
618 621 3.444805 GACTCGTCGCTGGGCTCT 61.445 66.667 0.00 0.00 0.00 4.09
631 634 3.181967 AATGTCAGCGCGCGACTC 61.182 61.111 36.44 25.24 34.37 3.36
637 640 1.016130 AAGTCCTCAATGTCAGCGCG 61.016 55.000 0.00 0.00 0.00 6.86
645 648 6.154445 CCACAAATTCTTCAAGTCCTCAATG 58.846 40.000 0.00 0.00 0.00 2.82
646 649 5.244626 CCCACAAATTCTTCAAGTCCTCAAT 59.755 40.000 0.00 0.00 0.00 2.57
655 658 3.822735 CTCTGCTCCCACAAATTCTTCAA 59.177 43.478 0.00 0.00 0.00 2.69
675 678 2.907910 TACTCGCTGTTTCGGTACTC 57.092 50.000 0.00 0.00 0.00 2.59
676 679 2.751259 TGATACTCGCTGTTTCGGTACT 59.249 45.455 0.00 0.00 30.72 2.73
677 680 3.141002 TGATACTCGCTGTTTCGGTAC 57.859 47.619 0.00 0.00 30.72 3.34
678 681 3.766151 CTTGATACTCGCTGTTTCGGTA 58.234 45.455 0.00 0.00 30.72 4.02
679 682 2.607187 CTTGATACTCGCTGTTTCGGT 58.393 47.619 0.00 0.00 30.72 4.69
680 683 1.324736 GCTTGATACTCGCTGTTTCGG 59.675 52.381 0.00 0.00 30.72 4.30
681 684 1.992667 TGCTTGATACTCGCTGTTTCG 59.007 47.619 0.00 0.00 30.72 3.46
682 685 3.254060 TCTGCTTGATACTCGCTGTTTC 58.746 45.455 0.00 0.00 0.00 2.78
683 686 3.319137 TCTGCTTGATACTCGCTGTTT 57.681 42.857 0.00 0.00 0.00 2.83
684 687 3.257393 CTTCTGCTTGATACTCGCTGTT 58.743 45.455 0.00 0.00 0.00 3.16
685 688 2.417924 CCTTCTGCTTGATACTCGCTGT 60.418 50.000 0.00 0.00 0.00 4.40
686 689 2.200067 CCTTCTGCTTGATACTCGCTG 58.800 52.381 0.00 0.00 0.00 5.18
687 690 1.472376 GCCTTCTGCTTGATACTCGCT 60.472 52.381 0.00 0.00 36.87 4.93
688 691 0.933796 GCCTTCTGCTTGATACTCGC 59.066 55.000 0.00 0.00 36.87 5.03
689 692 2.299993 TGCCTTCTGCTTGATACTCG 57.700 50.000 0.00 0.00 42.00 4.18
745 756 3.576982 TGAACACTTGTACCGAGGAGAAT 59.423 43.478 0.00 0.00 0.00 2.40
806 817 6.554982 ACCAGTGAATTAGTCATAGGCTCATA 59.445 38.462 0.00 0.00 38.90 2.15
807 818 5.367937 ACCAGTGAATTAGTCATAGGCTCAT 59.632 40.000 0.00 0.00 38.90 2.90
808 819 4.716784 ACCAGTGAATTAGTCATAGGCTCA 59.283 41.667 0.00 0.00 38.90 4.26
809 820 5.053145 CACCAGTGAATTAGTCATAGGCTC 58.947 45.833 0.00 0.00 38.90 4.70
810 821 4.141620 CCACCAGTGAATTAGTCATAGGCT 60.142 45.833 0.00 0.00 38.90 4.58
811 822 4.130118 CCACCAGTGAATTAGTCATAGGC 58.870 47.826 0.00 0.00 38.90 3.93
812 823 5.614324 TCCACCAGTGAATTAGTCATAGG 57.386 43.478 0.00 2.68 38.90 2.57
813 824 7.012704 CCAATTCCACCAGTGAATTAGTCATAG 59.987 40.741 0.00 0.00 38.90 2.23
861 872 2.498481 TGGACAACCTCCGGTTAGTATG 59.502 50.000 0.00 0.00 45.01 2.39
863 874 2.307496 TGGACAACCTCCGGTTAGTA 57.693 50.000 0.00 0.00 45.01 1.82
865 876 2.554370 TTTGGACAACCTCCGGTTAG 57.446 50.000 0.00 0.00 45.01 2.34
869 880 3.616219 TGATTATTTGGACAACCTCCGG 58.384 45.455 0.00 0.00 43.03 5.14
878 889 7.095017 GCCAATAGCTAGACTGATTATTTGGAC 60.095 40.741 16.05 6.78 38.99 4.02
917 928 6.833933 AGAAATTTCCCTGTCTGTTGTACTTT 59.166 34.615 14.61 0.00 0.00 2.66
918 929 6.365520 AGAAATTTCCCTGTCTGTTGTACTT 58.634 36.000 14.61 0.00 0.00 2.24
919 930 5.941788 AGAAATTTCCCTGTCTGTTGTACT 58.058 37.500 14.61 0.00 0.00 2.73
920 931 7.739498 TTAGAAATTTCCCTGTCTGTTGTAC 57.261 36.000 14.61 0.00 0.00 2.90
953 964 9.084533 TGCTCCCTACATAGTTTGTTTAAAAAT 57.915 29.630 0.00 0.00 39.87 1.82
1007 1018 1.003718 ACGGCCTTAACAGCAGACC 60.004 57.895 0.00 0.00 0.00 3.85
1027 1038 4.778534 CAAGTTTGCTCACATTCCTGAT 57.221 40.909 0.00 0.00 0.00 2.90
1083 1094 6.433847 TCTTTCAAGAATCCTACTTCACCA 57.566 37.500 0.00 0.00 30.73 4.17
1344 1355 4.617959 TCCTTCTTATACGCTGGATTTCG 58.382 43.478 0.00 0.00 0.00 3.46
1388 1399 7.148440 CCAAATCAATATTCAAACGGTTTGCAT 60.148 33.333 24.97 22.16 40.43 3.96
1420 1434 1.160137 CAGCACTTGCCTAGAACACC 58.840 55.000 0.00 0.00 43.38 4.16
1437 1451 1.363744 GAAACTCATCCTCGGCACAG 58.636 55.000 0.00 0.00 0.00 3.66
1522 1536 3.482436 TGTCCGTTATTTCTTGGCACTT 58.518 40.909 0.00 0.00 0.00 3.16
1638 1655 7.872993 TCGAAGTGTTCTTTTACTCTTGATGAT 59.127 33.333 0.00 0.00 33.41 2.45
1723 1740 4.322424 GGTCCCCATTATTTGTTCCACAAC 60.322 45.833 0.00 0.00 37.90 3.32
1762 1779 0.246635 CCCACCTCACACTAACGGAG 59.753 60.000 0.00 0.00 0.00 4.63
1768 1797 2.158219 TCTCCTTTCCCACCTCACACTA 60.158 50.000 0.00 0.00 0.00 2.74
2058 2087 4.692625 AGTTCTTCAAACTCATCCACATCG 59.307 41.667 0.00 0.00 0.00 3.84
2165 2194 8.717717 TCAAGAGTATATCAATCCATGTTTCCT 58.282 33.333 0.00 0.00 0.00 3.36
2166 2195 8.908786 TCAAGAGTATATCAATCCATGTTTCC 57.091 34.615 0.00 0.00 0.00 3.13
2547 2576 5.224135 TGACATGCAGTTTTGTCAATCATG 58.776 37.500 16.48 0.00 46.75 3.07
2623 2708 3.815401 GTGTCAGCAAGAAACACCATACT 59.185 43.478 0.00 0.00 37.84 2.12
2645 2752 4.550577 TGCATTATAAAGTGCATCCACG 57.449 40.909 9.22 0.00 45.60 4.94
3161 3325 7.707104 AGGTTGTTAGTTGTCTCATTTTTCTG 58.293 34.615 0.00 0.00 0.00 3.02
3357 3524 0.251832 AGGATCGGCATCGGGTCTAT 60.252 55.000 0.00 0.00 36.95 1.98
3437 3604 1.248486 GAAACCCTTGGGCAGAGAAC 58.752 55.000 5.46 0.00 0.00 3.01
3580 3747 2.486966 GAAGGTGCAGCAATCCGC 59.513 61.111 19.63 0.00 42.91 5.54
3623 3790 4.712337 TCTCCAGAAATCAGGGACTTACTC 59.288 45.833 0.00 0.00 34.60 2.59
3691 3858 3.967326 ACATGAGGGCATAGTAAGCTACA 59.033 43.478 0.00 0.00 32.27 2.74
3692 3859 4.608948 ACATGAGGGCATAGTAAGCTAC 57.391 45.455 0.00 0.00 32.27 3.58
3693 3860 4.901849 AGAACATGAGGGCATAGTAAGCTA 59.098 41.667 0.00 0.00 32.27 3.32
3694 3861 3.713764 AGAACATGAGGGCATAGTAAGCT 59.286 43.478 0.00 0.00 32.27 3.74
3718 3885 9.698617 GACCGTAAACAGCAGTAAATATTAAAG 57.301 33.333 0.00 0.00 0.00 1.85
3719 3886 9.217278 TGACCGTAAACAGCAGTAAATATTAAA 57.783 29.630 0.00 0.00 0.00 1.52
3720 3887 8.774890 TGACCGTAAACAGCAGTAAATATTAA 57.225 30.769 0.00 0.00 0.00 1.40
3723 3890 6.636705 TCTGACCGTAAACAGCAGTAAATAT 58.363 36.000 0.00 0.00 34.57 1.28
3732 3899 6.040878 ACTGTAATATCTGACCGTAAACAGC 58.959 40.000 0.00 0.00 36.21 4.40
3741 3908 3.662247 CGGGGACTGTAATATCTGACC 57.338 52.381 0.00 0.00 0.00 4.02
3759 3926 5.461078 CGGTCCTTGTACTGAAAATATACGG 59.539 44.000 0.00 0.00 0.00 4.02
3777 3946 8.480133 AACTTTATTATGAGTATCTCGGTCCT 57.520 34.615 0.00 0.00 34.92 3.85
3778 3947 8.578151 AGAACTTTATTATGAGTATCTCGGTCC 58.422 37.037 0.00 0.00 34.92 4.46
3779 3948 9.400638 CAGAACTTTATTATGAGTATCTCGGTC 57.599 37.037 0.00 0.00 34.92 4.79
3780 3949 8.915036 ACAGAACTTTATTATGAGTATCTCGGT 58.085 33.333 0.00 0.00 34.92 4.69
3781 3950 9.751542 AACAGAACTTTATTATGAGTATCTCGG 57.248 33.333 0.00 0.00 34.92 4.63
3833 4002 0.324091 AAGCAAGGCAGGGAAGGATG 60.324 55.000 0.00 0.00 0.00 3.51
3871 4040 2.225491 TGAGTGCGCAAACTGTTTATCC 59.775 45.455 14.00 0.00 0.00 2.59
3875 4044 1.472480 ACTTGAGTGCGCAAACTGTTT 59.528 42.857 14.00 0.00 0.00 2.83
3881 4050 4.975502 CAGAAAATAACTTGAGTGCGCAAA 59.024 37.500 14.00 1.19 0.00 3.68
3948 4118 4.821805 TCTTAAAGTTCCACCAGCAAGAAG 59.178 41.667 0.00 0.00 0.00 2.85
3949 4119 4.787551 TCTTAAAGTTCCACCAGCAAGAA 58.212 39.130 0.00 0.00 0.00 2.52
3950 4120 4.431416 TCTTAAAGTTCCACCAGCAAGA 57.569 40.909 0.00 0.00 0.00 3.02
3951 4121 4.821805 TCTTCTTAAAGTTCCACCAGCAAG 59.178 41.667 0.00 0.00 33.95 4.01
3952 4122 4.787551 TCTTCTTAAAGTTCCACCAGCAA 58.212 39.130 0.00 0.00 33.95 3.91
3953 4123 4.431416 TCTTCTTAAAGTTCCACCAGCA 57.569 40.909 0.00 0.00 33.95 4.41
3954 4124 5.966742 AATCTTCTTAAAGTTCCACCAGC 57.033 39.130 0.00 0.00 33.95 4.85
3955 4125 7.386848 TCGTAAATCTTCTTAAAGTTCCACCAG 59.613 37.037 0.00 0.00 33.95 4.00
3956 4126 7.218614 TCGTAAATCTTCTTAAAGTTCCACCA 58.781 34.615 0.00 0.00 33.95 4.17
3957 4127 7.387122 ACTCGTAAATCTTCTTAAAGTTCCACC 59.613 37.037 0.00 0.00 33.95 4.61
3958 4128 8.221766 CACTCGTAAATCTTCTTAAAGTTCCAC 58.778 37.037 0.00 0.00 33.95 4.02
3974 4144 1.066430 ACATGTCCGCCACTCGTAAAT 60.066 47.619 0.00 0.00 36.19 1.40
4010 4180 9.606631 GACAAAGACATCTGAATTAGGAATAGT 57.393 33.333 0.00 0.00 0.00 2.12
4011 4181 9.050601 GGACAAAGACATCTGAATTAGGAATAG 57.949 37.037 0.00 0.00 0.00 1.73
4012 4182 7.993183 GGGACAAAGACATCTGAATTAGGAATA 59.007 37.037 0.00 0.00 0.00 1.75
4013 4183 6.830838 GGGACAAAGACATCTGAATTAGGAAT 59.169 38.462 0.00 0.00 0.00 3.01
4067 4242 7.430502 GCGAAAAAGATACATTCAGAAAGGATG 59.569 37.037 0.00 0.00 0.00 3.51
4074 4249 4.843728 AGGGCGAAAAAGATACATTCAGA 58.156 39.130 0.00 0.00 0.00 3.27
4078 4253 4.600062 AGGAAGGGCGAAAAAGATACATT 58.400 39.130 0.00 0.00 0.00 2.71
4089 4264 3.694072 CACATAATTTGAGGAAGGGCGAA 59.306 43.478 0.00 0.00 0.00 4.70
4097 4272 9.353431 ACATACAATATGCACATAATTTGAGGA 57.647 29.630 9.76 0.00 0.00 3.71
4098 4273 9.970395 AACATACAATATGCACATAATTTGAGG 57.030 29.630 9.76 3.59 0.00 3.86
4185 4362 9.710900 AAATCAGAAATATAGATACGCACATCA 57.289 29.630 0.00 0.00 0.00 3.07
4186 4363 9.964253 CAAATCAGAAATATAGATACGCACATC 57.036 33.333 0.00 0.00 0.00 3.06
4187 4364 9.710900 TCAAATCAGAAATATAGATACGCACAT 57.289 29.630 0.00 0.00 0.00 3.21
4192 4369 9.193133 ACGGTTCAAATCAGAAATATAGATACG 57.807 33.333 0.00 0.00 0.00 3.06
4268 4445 9.918630 CCATGTCAAGAGAGAAAAATACATTTT 57.081 29.630 0.00 0.00 43.85 1.82
4270 4447 8.517878 CACCATGTCAAGAGAGAAAAATACATT 58.482 33.333 0.00 0.00 0.00 2.71
4271 4448 7.884877 TCACCATGTCAAGAGAGAAAAATACAT 59.115 33.333 0.00 0.00 0.00 2.29
4273 4450 7.625185 GCTCACCATGTCAAGAGAGAAAAATAC 60.625 40.741 0.00 0.00 0.00 1.89
4341 4518 5.470098 GTCTAGAACTTGGCATTCAGTGAAA 59.530 40.000 10.14 0.00 0.00 2.69
4394 4571 1.145571 AGGTGTAGCACAAAGGGGAA 58.854 50.000 1.61 0.00 35.86 3.97
4399 4576 1.148310 CCGTCAGGTGTAGCACAAAG 58.852 55.000 1.61 0.00 35.86 2.77
4456 4633 7.479897 TTTTGCTGTCGTTGTATAGTTTGTA 57.520 32.000 0.00 0.00 0.00 2.41
4480 4657 7.069331 TGACTGTGGATGGTGTTTAAGATTTTT 59.931 33.333 0.00 0.00 0.00 1.94
4481 4658 6.549364 TGACTGTGGATGGTGTTTAAGATTTT 59.451 34.615 0.00 0.00 0.00 1.82
4482 4659 6.068010 TGACTGTGGATGGTGTTTAAGATTT 58.932 36.000 0.00 0.00 0.00 2.17
4483 4660 5.630121 TGACTGTGGATGGTGTTTAAGATT 58.370 37.500 0.00 0.00 0.00 2.40
4484 4661 5.241403 TGACTGTGGATGGTGTTTAAGAT 57.759 39.130 0.00 0.00 0.00 2.40
4485 4662 4.698201 TGACTGTGGATGGTGTTTAAGA 57.302 40.909 0.00 0.00 0.00 2.10
4486 4663 4.821805 AGTTGACTGTGGATGGTGTTTAAG 59.178 41.667 0.00 0.00 0.00 1.85
4487 4664 4.787551 AGTTGACTGTGGATGGTGTTTAA 58.212 39.130 0.00 0.00 0.00 1.52
4488 4665 4.431416 AGTTGACTGTGGATGGTGTTTA 57.569 40.909 0.00 0.00 0.00 2.01
4540 4717 5.295950 CAATCCCTGCAATGTTACACAAAA 58.704 37.500 0.00 0.00 0.00 2.44
4557 4734 2.761465 CCCCCTCCTCTGCAATCCC 61.761 68.421 0.00 0.00 0.00 3.85
4558 4735 2.922234 CCCCCTCCTCTGCAATCC 59.078 66.667 0.00 0.00 0.00 3.01
4574 4751 3.665675 CTACTGCTCCGCCACACCC 62.666 68.421 0.00 0.00 0.00 4.61
4575 4752 2.125512 CTACTGCTCCGCCACACC 60.126 66.667 0.00 0.00 0.00 4.16
4576 4753 2.815647 GCTACTGCTCCGCCACAC 60.816 66.667 0.00 0.00 36.03 3.82
4577 4754 2.878089 TTGCTACTGCTCCGCCACA 61.878 57.895 0.00 0.00 40.48 4.17
4578 4755 2.047274 TTGCTACTGCTCCGCCAC 60.047 61.111 0.00 0.00 40.48 5.01
4579 4756 2.047274 GTTGCTACTGCTCCGCCA 60.047 61.111 0.00 0.00 40.48 5.69
4580 4757 2.047274 TGTTGCTACTGCTCCGCC 60.047 61.111 0.00 0.00 40.48 6.13
4581 4758 0.108804 TACTGTTGCTACTGCTCCGC 60.109 55.000 5.16 0.00 40.48 5.54
4582 4759 2.263077 CTTACTGTTGCTACTGCTCCG 58.737 52.381 5.16 0.00 40.48 4.63
4583 4760 3.320673 ACTTACTGTTGCTACTGCTCC 57.679 47.619 5.16 0.00 40.48 4.70
4584 4761 5.061920 ACTACTTACTGTTGCTACTGCTC 57.938 43.478 5.16 0.00 40.48 4.26
4585 4762 5.105837 GGTACTACTTACTGTTGCTACTGCT 60.106 44.000 5.16 0.00 40.48 4.24
4586 4763 5.100943 GGTACTACTTACTGTTGCTACTGC 58.899 45.833 5.16 0.00 40.20 4.40
4587 4764 5.122869 TCGGTACTACTTACTGTTGCTACTG 59.877 44.000 3.77 3.77 38.16 2.74
4588 4765 5.123027 GTCGGTACTACTTACTGTTGCTACT 59.877 44.000 0.00 0.00 38.16 2.57
4589 4766 5.123027 AGTCGGTACTACTTACTGTTGCTAC 59.877 44.000 0.00 0.00 38.16 3.58
4590 4767 5.248640 AGTCGGTACTACTTACTGTTGCTA 58.751 41.667 0.00 0.00 38.16 3.49
4591 4768 4.077822 AGTCGGTACTACTTACTGTTGCT 58.922 43.478 0.00 0.00 38.16 3.91
4592 4769 4.431661 AGTCGGTACTACTTACTGTTGC 57.568 45.455 0.00 0.00 38.16 4.17
4609 4786 1.994507 CTGTGAGCTCCCGGTAGTCG 61.995 65.000 12.15 0.00 38.88 4.18
4610 4787 1.810532 CTGTGAGCTCCCGGTAGTC 59.189 63.158 12.15 0.00 0.00 2.59
4611 4788 2.352032 GCTGTGAGCTCCCGGTAGT 61.352 63.158 12.15 0.00 38.45 2.73
4612 4789 2.496817 GCTGTGAGCTCCCGGTAG 59.503 66.667 12.15 0.00 38.45 3.18
4629 4806 2.216488 CGACGTATTTGATCTGCGGAAG 59.784 50.000 0.00 0.00 0.00 3.46
4630 4807 2.190161 CGACGTATTTGATCTGCGGAA 58.810 47.619 0.00 0.00 0.00 4.30
4631 4808 1.535226 CCGACGTATTTGATCTGCGGA 60.535 52.381 0.00 0.00 39.85 5.54
4632 4809 0.852777 CCGACGTATTTGATCTGCGG 59.147 55.000 0.00 0.00 0.00 5.69
4633 4810 0.229753 GCCGACGTATTTGATCTGCG 59.770 55.000 0.00 0.00 0.00 5.18
4634 4811 0.229753 CGCCGACGTATTTGATCTGC 59.770 55.000 0.00 0.00 33.53 4.26
4635 4812 1.781429 CTCGCCGACGTATTTGATCTG 59.219 52.381 0.00 0.00 41.18 2.90
4636 4813 1.269102 CCTCGCCGACGTATTTGATCT 60.269 52.381 0.00 0.00 41.18 2.75
4637 4814 1.129326 CCTCGCCGACGTATTTGATC 58.871 55.000 0.00 0.00 41.18 2.92
4638 4815 0.874607 GCCTCGCCGACGTATTTGAT 60.875 55.000 0.00 0.00 41.18 2.57
4639 4816 1.517694 GCCTCGCCGACGTATTTGA 60.518 57.895 0.00 0.00 41.18 2.69
4640 4817 1.355796 TTGCCTCGCCGACGTATTTG 61.356 55.000 0.00 0.00 41.18 2.32
4641 4818 0.671163 TTTGCCTCGCCGACGTATTT 60.671 50.000 0.00 0.00 41.18 1.40
4642 4819 1.079681 TTTGCCTCGCCGACGTATT 60.080 52.632 0.00 0.00 41.18 1.89
4643 4820 1.518572 CTTTGCCTCGCCGACGTAT 60.519 57.895 0.00 0.00 41.18 3.06
4644 4821 2.126228 CTTTGCCTCGCCGACGTA 60.126 61.111 0.00 0.00 41.18 3.57
4646 4823 4.735132 TCCTTTGCCTCGCCGACG 62.735 66.667 0.00 0.00 42.01 5.12
4647 4824 2.125106 ATCCTTTGCCTCGCCGAC 60.125 61.111 0.00 0.00 0.00 4.79
4648 4825 2.125147 CATCCTTTGCCTCGCCGA 60.125 61.111 0.00 0.00 0.00 5.54
4649 4826 3.204827 CCATCCTTTGCCTCGCCG 61.205 66.667 0.00 0.00 0.00 6.46
4650 4827 3.521796 GCCATCCTTTGCCTCGCC 61.522 66.667 0.00 0.00 0.00 5.54
4651 4828 3.521796 GGCCATCCTTTGCCTCGC 61.522 66.667 0.00 0.00 44.46 5.03
4652 4829 3.204827 CGGCCATCCTTTGCCTCG 61.205 66.667 2.24 0.00 45.71 4.63
4653 4830 2.830370 CCGGCCATCCTTTGCCTC 60.830 66.667 2.24 0.00 45.71 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.