Multiple sequence alignment - TraesCS2A01G128600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G128600 chr2A 100.000 6380 0 0 1 6380 77154403 77160782 0.000000e+00 11782.0
1 TraesCS2A01G128600 chr2B 90.943 5620 411 55 782 6367 117866035 117871590 0.000000e+00 7468.0
2 TraesCS2A01G128600 chr2B 86.859 624 66 8 111 722 117865416 117866035 0.000000e+00 684.0
3 TraesCS2A01G128600 chr2D 90.664 4863 351 62 782 5612 76613130 76617921 0.000000e+00 6370.0
4 TraesCS2A01G128600 chr2D 87.961 623 57 8 111 722 76612515 76613130 0.000000e+00 719.0
5 TraesCS2A01G128600 chr2D 88.822 501 54 2 5863 6362 76632940 76633439 1.180000e-171 614.0
6 TraesCS2A01G128600 chr2D 97.222 36 1 0 2582 2617 650825485 650825520 1.920000e-05 62.1
7 TraesCS2A01G128600 chr1B 86.618 411 49 6 5968 6374 112693671 112693263 3.510000e-122 449.0
8 TraesCS2A01G128600 chr4D 86.553 409 52 3 5968 6374 122210640 122210233 1.260000e-121 448.0
9 TraesCS2A01G128600 chr1D 86.473 414 46 9 5966 6374 125818786 125818378 4.540000e-121 446.0
10 TraesCS2A01G128600 chr1D 85.533 394 56 1 5970 6362 285112379 285112772 1.660000e-110 411.0
11 TraesCS2A01G128600 chr1D 82.900 462 60 15 2583 3033 13369272 13369725 1.290000e-106 398.0
12 TraesCS2A01G128600 chr7B 85.856 403 55 1 5967 6367 60510242 60510644 1.640000e-115 427.0
13 TraesCS2A01G128600 chr5D 85.750 400 52 4 5966 6362 486140654 486141051 9.890000e-113 418.0
14 TraesCS2A01G128600 chr5D 80.907 419 68 11 2606 3013 362872519 362872936 2.870000e-83 320.0
15 TraesCS2A01G128600 chr5D 79.856 417 65 14 2611 3013 278260145 278259734 2.910000e-73 287.0
16 TraesCS2A01G128600 chr5D 78.492 451 80 14 2588 3024 507863214 507863661 4.870000e-71 279.0
17 TraesCS2A01G128600 chr1A 84.541 414 62 2 5963 6375 436950693 436951105 5.950000e-110 409.0
18 TraesCS2A01G128600 chr1A 81.282 390 60 12 2606 2987 7849457 7849841 2.890000e-78 303.0
19 TraesCS2A01G128600 chr5B 78.678 469 70 20 2585 3029 678487869 678488331 1.050000e-72 285.0
20 TraesCS2A01G128600 chr7D 79.426 418 72 12 2619 3024 625623895 625623480 3.770000e-72 283.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G128600 chr2A 77154403 77160782 6379 False 11782.0 11782 100.0000 1 6380 1 chr2A.!!$F1 6379
1 TraesCS2A01G128600 chr2B 117865416 117871590 6174 False 4076.0 7468 88.9010 111 6367 2 chr2B.!!$F1 6256
2 TraesCS2A01G128600 chr2D 76612515 76617921 5406 False 3544.5 6370 89.3125 111 5612 2 chr2D.!!$F3 5501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.033894 AACTGACCCACGGTTTTGGT 60.034 50.000 0.00 0.00 44.61 3.67 F
1156 1168 0.307760 CGTGCTTGTGAGGGTTGTTC 59.692 55.000 0.00 0.00 0.00 3.18 F
1341 1374 0.397941 TCCCTTCCAAGCACAGTGAG 59.602 55.000 4.15 0.00 0.00 3.51 F
3013 3078 0.618458 TAACGGCTTCCATGGAGCTT 59.382 50.000 25.57 18.65 0.00 3.74 F
3541 3609 1.065491 GCCACCACTGATGTGTATGGA 60.065 52.381 16.09 0.00 44.69 3.41 F
4113 4183 1.009829 GTCCAGGTTTCATAGCAGCG 58.990 55.000 0.00 0.00 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1366 1399 0.033894 AGAGTCCCTCCTTCCGAGAC 60.034 60.0 0.00 0.0 41.63 3.36 R
3013 3078 0.107831 GTGTGGTTGTCTGTAGGCCA 59.892 55.0 5.01 0.0 0.00 5.36 R
3333 3401 0.472471 AGTTCCGTTCAGCCCTTTGA 59.528 50.0 0.00 0.0 0.00 2.69 R
4098 4168 0.250234 TGCTCGCTGCTATGAAACCT 59.750 50.0 0.00 0.0 43.37 3.50 R
4504 4574 0.736053 GTTTTGTGAGGACGCAACCA 59.264 50.0 0.00 0.0 44.51 3.67 R
5920 6001 0.036765 TGGGGTTCTTCGTCAATCGG 60.037 55.0 0.00 0.0 40.32 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.367512 GGTGAGGGGGAGAGCCAT 60.368 66.667 0.00 0.00 35.15 4.40
18 19 2.750657 GGTGAGGGGGAGAGCCATG 61.751 68.421 0.00 0.00 35.15 3.66
19 20 2.367377 TGAGGGGGAGAGCCATGG 60.367 66.667 7.63 7.63 35.15 3.66
20 21 2.040464 GAGGGGGAGAGCCATGGA 60.040 66.667 18.40 0.00 35.15 3.41
21 22 1.694169 GAGGGGGAGAGCCATGGAA 60.694 63.158 18.40 0.00 35.15 3.53
22 23 1.695597 AGGGGGAGAGCCATGGAAG 60.696 63.158 18.40 0.00 35.15 3.46
23 24 2.761465 GGGGGAGAGCCATGGAAGG 61.761 68.421 18.40 0.00 35.15 3.46
24 25 1.694169 GGGGAGAGCCATGGAAGGA 60.694 63.158 18.40 0.00 35.15 3.36
25 26 1.704007 GGGGAGAGCCATGGAAGGAG 61.704 65.000 18.40 0.00 35.15 3.69
26 27 0.692419 GGGAGAGCCATGGAAGGAGA 60.692 60.000 18.40 0.00 35.15 3.71
27 28 1.433121 GGAGAGCCATGGAAGGAGAT 58.567 55.000 18.40 0.00 0.00 2.75
28 29 1.072015 GGAGAGCCATGGAAGGAGATG 59.928 57.143 18.40 0.00 0.00 2.90
29 30 1.072015 GAGAGCCATGGAAGGAGATGG 59.928 57.143 18.40 0.00 41.95 3.51
30 31 0.110104 GAGCCATGGAAGGAGATGGG 59.890 60.000 18.40 0.00 39.75 4.00
31 32 1.152368 GCCATGGAAGGAGATGGGG 59.848 63.158 18.40 0.00 39.75 4.96
32 33 1.355718 GCCATGGAAGGAGATGGGGA 61.356 60.000 18.40 0.00 39.75 4.81
33 34 0.475906 CCATGGAAGGAGATGGGGAC 59.524 60.000 5.56 0.00 36.26 4.46
34 35 0.107456 CATGGAAGGAGATGGGGACG 59.893 60.000 0.00 0.00 0.00 4.79
35 36 1.056700 ATGGAAGGAGATGGGGACGG 61.057 60.000 0.00 0.00 0.00 4.79
36 37 2.444256 GGAAGGAGATGGGGACGGG 61.444 68.421 0.00 0.00 0.00 5.28
37 38 2.366972 AAGGAGATGGGGACGGGG 60.367 66.667 0.00 0.00 0.00 5.73
38 39 2.891307 GAAGGAGATGGGGACGGGGA 62.891 65.000 0.00 0.00 0.00 4.81
39 40 2.366435 GGAGATGGGGACGGGGAA 60.366 66.667 0.00 0.00 0.00 3.97
40 41 2.444256 GGAGATGGGGACGGGGAAG 61.444 68.421 0.00 0.00 0.00 3.46
41 42 1.382695 GAGATGGGGACGGGGAAGA 60.383 63.158 0.00 0.00 0.00 2.87
42 43 1.383248 AGATGGGGACGGGGAAGAG 60.383 63.158 0.00 0.00 0.00 2.85
43 44 1.689582 GATGGGGACGGGGAAGAGT 60.690 63.158 0.00 0.00 0.00 3.24
44 45 1.972660 GATGGGGACGGGGAAGAGTG 61.973 65.000 0.00 0.00 0.00 3.51
45 46 2.284405 GGGGACGGGGAAGAGTGA 60.284 66.667 0.00 0.00 0.00 3.41
46 47 2.359967 GGGGACGGGGAAGAGTGAG 61.360 68.421 0.00 0.00 0.00 3.51
47 48 2.359967 GGGACGGGGAAGAGTGAGG 61.360 68.421 0.00 0.00 0.00 3.86
48 49 2.359967 GGACGGGGAAGAGTGAGGG 61.360 68.421 0.00 0.00 0.00 4.30
49 50 1.305046 GACGGGGAAGAGTGAGGGA 60.305 63.158 0.00 0.00 0.00 4.20
50 51 1.305381 ACGGGGAAGAGTGAGGGAG 60.305 63.158 0.00 0.00 0.00 4.30
51 52 2.060980 CGGGGAAGAGTGAGGGAGG 61.061 68.421 0.00 0.00 0.00 4.30
52 53 1.690985 GGGGAAGAGTGAGGGAGGG 60.691 68.421 0.00 0.00 0.00 4.30
53 54 1.690985 GGGAAGAGTGAGGGAGGGG 60.691 68.421 0.00 0.00 0.00 4.79
54 55 1.081277 GGAAGAGTGAGGGAGGGGT 59.919 63.158 0.00 0.00 0.00 4.95
55 56 1.268283 GGAAGAGTGAGGGAGGGGTG 61.268 65.000 0.00 0.00 0.00 4.61
56 57 0.252284 GAAGAGTGAGGGAGGGGTGA 60.252 60.000 0.00 0.00 0.00 4.02
57 58 0.252467 AAGAGTGAGGGAGGGGTGAG 60.252 60.000 0.00 0.00 0.00 3.51
58 59 1.687493 GAGTGAGGGAGGGGTGAGG 60.687 68.421 0.00 0.00 0.00 3.86
59 60 2.689034 GTGAGGGAGGGGTGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
60 61 4.024984 TGAGGGAGGGGTGAGGGG 62.025 72.222 0.00 0.00 0.00 4.79
61 62 4.026357 GAGGGAGGGGTGAGGGGT 62.026 72.222 0.00 0.00 0.00 4.95
62 63 3.552911 AGGGAGGGGTGAGGGGTT 61.553 66.667 0.00 0.00 0.00 4.11
63 64 3.339093 GGGAGGGGTGAGGGGTTG 61.339 72.222 0.00 0.00 0.00 3.77
64 65 4.048470 GGAGGGGTGAGGGGTTGC 62.048 72.222 0.00 0.00 0.00 4.17
65 66 4.410400 GAGGGGTGAGGGGTTGCG 62.410 72.222 0.00 0.00 0.00 4.85
85 86 2.281139 GCGCCCTTAGCCATCTCC 60.281 66.667 0.00 0.00 38.78 3.71
86 87 3.106986 GCGCCCTTAGCCATCTCCA 62.107 63.158 0.00 0.00 38.78 3.86
87 88 1.070445 CGCCCTTAGCCATCTCCAG 59.930 63.158 0.00 0.00 38.78 3.86
88 89 1.453669 GCCCTTAGCCATCTCCAGG 59.546 63.158 0.00 0.00 34.35 4.45
97 98 2.322355 CCATCTCCAGGCAGTTAGTG 57.678 55.000 0.00 0.00 0.00 2.74
98 99 1.134280 CCATCTCCAGGCAGTTAGTGG 60.134 57.143 0.00 0.00 0.00 4.00
99 100 1.833630 CATCTCCAGGCAGTTAGTGGA 59.166 52.381 0.00 0.00 38.07 4.02
100 101 2.024176 TCTCCAGGCAGTTAGTGGAA 57.976 50.000 0.00 0.00 39.91 3.53
101 102 1.902508 TCTCCAGGCAGTTAGTGGAAG 59.097 52.381 0.00 0.00 39.91 3.46
102 103 0.324943 TCCAGGCAGTTAGTGGAAGC 59.675 55.000 0.00 0.00 37.43 3.86
103 104 0.036732 CCAGGCAGTTAGTGGAAGCA 59.963 55.000 0.00 0.00 32.60 3.91
104 105 1.446907 CAGGCAGTTAGTGGAAGCAG 58.553 55.000 0.00 0.00 0.00 4.24
105 106 0.326264 AGGCAGTTAGTGGAAGCAGG 59.674 55.000 0.00 0.00 0.00 4.85
106 107 0.324943 GGCAGTTAGTGGAAGCAGGA 59.675 55.000 0.00 0.00 0.00 3.86
107 108 1.677217 GGCAGTTAGTGGAAGCAGGAG 60.677 57.143 0.00 0.00 0.00 3.69
108 109 1.677217 GCAGTTAGTGGAAGCAGGAGG 60.677 57.143 0.00 0.00 0.00 4.30
109 110 1.625818 CAGTTAGTGGAAGCAGGAGGT 59.374 52.381 0.00 0.00 0.00 3.85
139 140 3.227614 GAAAAGCAACCCCTTAGGACAA 58.772 45.455 0.00 0.00 39.89 3.18
153 154 0.464916 GGACAACTGACCCACGGTTT 60.465 55.000 0.00 0.00 44.61 3.27
154 155 1.385528 GACAACTGACCCACGGTTTT 58.614 50.000 0.00 0.00 44.61 2.43
156 157 0.383949 CAACTGACCCACGGTTTTGG 59.616 55.000 0.00 0.00 44.61 3.28
157 158 0.033894 AACTGACCCACGGTTTTGGT 60.034 50.000 0.00 0.00 44.61 3.67
173 174 3.929660 GGTGACTTAGGACACCCAC 57.070 57.895 14.18 0.00 46.97 4.61
190 191 1.135803 CCACGCACAAAAATAGACGGG 60.136 52.381 0.00 0.00 0.00 5.28
191 192 0.519961 ACGCACAAAAATAGACGGGC 59.480 50.000 0.00 0.00 0.00 6.13
203 204 0.814010 AGACGGGCAGAAACACACAC 60.814 55.000 0.00 0.00 0.00 3.82
204 205 2.101209 GACGGGCAGAAACACACACG 62.101 60.000 0.00 0.00 0.00 4.49
209 210 1.275657 CAGAAACACACACGGCGTC 59.724 57.895 10.85 0.00 0.00 5.19
216 217 4.059459 CACACGGCGTCAGCGAAC 62.059 66.667 10.85 0.00 46.35 3.95
217 218 4.280494 ACACGGCGTCAGCGAACT 62.280 61.111 10.85 0.00 46.35 3.01
220 221 4.717629 CGGCGTCAGCGAACTGGA 62.718 66.667 0.00 0.00 44.59 3.86
223 224 1.493311 GCGTCAGCGAACTGGAAAG 59.507 57.895 0.00 0.00 44.59 2.62
244 245 2.302733 GGGGTTCGGTTTTACTGTCCTA 59.697 50.000 0.00 0.00 0.00 2.94
245 246 3.244526 GGGGTTCGGTTTTACTGTCCTAA 60.245 47.826 0.00 0.00 0.00 2.69
275 276 6.870971 TTCCCATTTAACTTGTGTGAGTAC 57.129 37.500 0.00 0.00 0.00 2.73
277 278 6.228258 TCCCATTTAACTTGTGTGAGTACTC 58.772 40.000 16.32 16.32 0.00 2.59
282 283 3.377346 ACTTGTGTGAGTACTCTGCAG 57.623 47.619 23.01 7.63 0.00 4.41
285 286 0.605589 GTGTGAGTACTCTGCAGCCT 59.394 55.000 23.01 1.54 0.00 4.58
316 317 1.141858 CCAATTAGGGCCAGGAGACTC 59.858 57.143 6.18 0.00 40.21 3.36
357 359 1.146041 CCTTGCCAGCTATGCGGTA 59.854 57.895 3.27 0.00 0.00 4.02
373 375 1.755008 GTAGCGCTCCTCTCCACCT 60.755 63.158 16.34 0.00 0.00 4.00
381 383 2.501723 GCTCCTCTCCACCTTTCATACA 59.498 50.000 0.00 0.00 0.00 2.29
382 384 3.680196 GCTCCTCTCCACCTTTCATACAC 60.680 52.174 0.00 0.00 0.00 2.90
396 398 8.956426 ACCTTTCATACACATTACAAATGGTAG 58.044 33.333 4.78 0.00 32.49 3.18
540 542 7.148407 GCATATGGTGTCCACTACTATAATTGC 60.148 40.741 4.56 0.00 35.80 3.56
576 578 2.544486 CGTTTATCAGTACCCGCCTACC 60.544 54.545 0.00 0.00 0.00 3.18
592 594 4.451900 GCCTACCTGTAGCAACATAATGT 58.548 43.478 0.00 0.00 34.37 2.71
637 639 3.571828 TCATGTGCATACCTCTCTAGAGC 59.428 47.826 15.35 2.85 40.75 4.09
651 653 7.502895 ACCTCTCTAGAGCGTCTATTAATTTCA 59.497 37.037 15.35 0.00 40.75 2.69
729 741 9.811995 ATATGTAAGATATACGTGTGTGTTTGT 57.188 29.630 0.00 0.00 0.00 2.83
730 742 7.341024 TGTAAGATATACGTGTGTGTTTGTG 57.659 36.000 0.00 0.00 0.00 3.33
731 743 6.924612 TGTAAGATATACGTGTGTGTTTGTGT 59.075 34.615 0.00 0.00 0.00 3.72
732 744 5.839262 AGATATACGTGTGTGTTTGTGTG 57.161 39.130 0.00 0.00 0.00 3.82
733 745 5.294356 AGATATACGTGTGTGTTTGTGTGT 58.706 37.500 0.00 0.00 0.00 3.72
734 746 3.666883 ATACGTGTGTGTTTGTGTGTG 57.333 42.857 0.00 0.00 0.00 3.82
735 747 1.231221 ACGTGTGTGTTTGTGTGTGT 58.769 45.000 0.00 0.00 0.00 3.72
736 748 1.069568 ACGTGTGTGTTTGTGTGTGTG 60.070 47.619 0.00 0.00 0.00 3.82
737 749 1.069568 CGTGTGTGTTTGTGTGTGTGT 60.070 47.619 0.00 0.00 0.00 3.72
738 750 2.315011 GTGTGTGTTTGTGTGTGTGTG 58.685 47.619 0.00 0.00 0.00 3.82
739 751 1.950216 TGTGTGTTTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
740 752 2.287248 TGTGTGTTTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
741 753 1.950216 TGTGTTTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
742 754 2.287248 TGTGTTTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
743 755 1.950216 TGTTTGTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
744 756 2.287248 TGTTTGTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
745 757 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
746 758 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
747 759 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
748 760 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
749 761 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
750 762 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
751 763 2.675844 GTGTGTGTGTGTGTGTGTGTAT 59.324 45.455 0.00 0.00 0.00 2.29
752 764 3.866327 GTGTGTGTGTGTGTGTGTGTATA 59.134 43.478 0.00 0.00 0.00 1.47
753 765 4.509970 GTGTGTGTGTGTGTGTGTGTATAT 59.490 41.667 0.00 0.00 0.00 0.86
754 766 5.692654 GTGTGTGTGTGTGTGTGTGTATATA 59.307 40.000 0.00 0.00 0.00 0.86
755 767 6.367695 GTGTGTGTGTGTGTGTGTGTATATAT 59.632 38.462 0.00 0.00 0.00 0.86
756 768 7.542824 GTGTGTGTGTGTGTGTGTGTATATATA 59.457 37.037 0.00 0.00 0.00 0.86
757 769 8.254508 TGTGTGTGTGTGTGTGTGTATATATAT 58.745 33.333 0.00 0.00 0.00 0.86
758 770 9.738832 GTGTGTGTGTGTGTGTGTATATATATA 57.261 33.333 0.00 0.00 0.00 0.86
942 954 5.126222 CCTACACTACACACACATCAGATCT 59.874 44.000 0.00 0.00 0.00 2.75
943 955 6.318900 CCTACACTACACACACATCAGATCTA 59.681 42.308 0.00 0.00 0.00 1.98
987 999 4.008330 AGAACATTGTGCTCTTCATCCTG 58.992 43.478 0.00 0.00 0.00 3.86
1090 1102 3.518590 GGTGTTCGACTATACCCTGTTG 58.481 50.000 0.00 0.00 0.00 3.33
1156 1168 0.307760 CGTGCTTGTGAGGGTTGTTC 59.692 55.000 0.00 0.00 0.00 3.18
1327 1360 2.610438 ACCATGATGTTGCTTCCCTT 57.390 45.000 0.00 0.00 0.00 3.95
1328 1361 2.450476 ACCATGATGTTGCTTCCCTTC 58.550 47.619 0.00 0.00 0.00 3.46
1330 1363 2.449464 CATGATGTTGCTTCCCTTCCA 58.551 47.619 0.00 0.00 0.00 3.53
1331 1364 2.673775 TGATGTTGCTTCCCTTCCAA 57.326 45.000 0.00 0.00 0.00 3.53
1332 1365 2.517959 TGATGTTGCTTCCCTTCCAAG 58.482 47.619 0.00 0.00 0.00 3.61
1333 1366 1.203287 GATGTTGCTTCCCTTCCAAGC 59.797 52.381 0.00 0.00 45.59 4.01
1336 1369 4.500265 GCTTCCCTTCCAAGCACA 57.500 55.556 0.00 0.00 44.87 4.57
1337 1370 2.261215 GCTTCCCTTCCAAGCACAG 58.739 57.895 0.00 0.00 44.87 3.66
1338 1371 0.538287 GCTTCCCTTCCAAGCACAGT 60.538 55.000 0.00 0.00 44.87 3.55
1339 1372 1.242076 CTTCCCTTCCAAGCACAGTG 58.758 55.000 0.00 0.00 0.00 3.66
1340 1373 0.843309 TTCCCTTCCAAGCACAGTGA 59.157 50.000 4.15 0.00 0.00 3.41
1341 1374 0.397941 TCCCTTCCAAGCACAGTGAG 59.602 55.000 4.15 0.00 0.00 3.51
1342 1375 0.397941 CCCTTCCAAGCACAGTGAGA 59.602 55.000 4.15 0.00 0.00 3.27
1343 1376 1.202806 CCCTTCCAAGCACAGTGAGAA 60.203 52.381 4.15 0.45 0.00 2.87
1344 1377 2.575532 CCTTCCAAGCACAGTGAGAAA 58.424 47.619 4.15 0.00 0.00 2.52
1345 1378 2.291741 CCTTCCAAGCACAGTGAGAAAC 59.708 50.000 4.15 0.00 0.00 2.78
1346 1379 3.209410 CTTCCAAGCACAGTGAGAAACT 58.791 45.455 4.15 0.00 40.93 2.66
1364 1397 2.568623 CTGGCAAACAGTAGGAACCT 57.431 50.000 0.00 0.00 42.42 3.50
1365 1398 2.427506 CTGGCAAACAGTAGGAACCTC 58.572 52.381 0.00 0.00 42.42 3.85
1366 1399 1.270625 TGGCAAACAGTAGGAACCTCG 60.271 52.381 0.00 0.00 0.00 4.63
1367 1400 1.270678 GGCAAACAGTAGGAACCTCGT 60.271 52.381 0.00 0.00 0.00 4.18
1368 1401 2.067013 GCAAACAGTAGGAACCTCGTC 58.933 52.381 0.00 0.00 0.00 4.20
1369 1402 2.288886 GCAAACAGTAGGAACCTCGTCT 60.289 50.000 0.00 0.00 0.00 4.18
1370 1403 3.576648 CAAACAGTAGGAACCTCGTCTC 58.423 50.000 0.00 0.00 0.00 3.36
1371 1404 1.451067 ACAGTAGGAACCTCGTCTCG 58.549 55.000 0.00 0.00 0.00 4.04
1377 1412 0.964358 GGAACCTCGTCTCGGAAGGA 60.964 60.000 0.56 0.00 0.00 3.36
1401 1436 3.071747 GGACTCTAAGACAATCCCCATCC 59.928 52.174 0.00 0.00 0.00 3.51
1410 1445 2.507886 ACAATCCCCATCCGATGTTACA 59.492 45.455 7.60 0.00 0.00 2.41
1413 1448 3.943671 TCCCCATCCGATGTTACAAAT 57.056 42.857 7.60 0.00 0.00 2.32
1422 1457 6.699895 TCCGATGTTACAAATATATCGCAC 57.300 37.500 0.00 0.00 39.27 5.34
1477 1512 1.239347 GTTGGAGGTGAAGGAAGTGC 58.761 55.000 0.00 0.00 0.00 4.40
1479 1514 1.376037 GGAGGTGAAGGAAGTGCGG 60.376 63.158 0.00 0.00 0.00 5.69
1497 1532 1.109323 GGGATGTGGTGCCCTATTGC 61.109 60.000 0.00 0.00 41.31 3.56
1537 1572 9.640963 AATGAGTTGTATTTAGTCTGAGTACAC 57.359 33.333 0.15 0.00 0.00 2.90
1586 1621 5.757320 TGTTAGCCCATGTTGAACAAATTTG 59.243 36.000 16.67 16.67 0.00 2.32
1603 1638 7.298122 ACAAATTTGATTAGACTGCTTACACG 58.702 34.615 24.64 0.00 0.00 4.49
1606 1641 2.496070 TGATTAGACTGCTTACACGGCT 59.504 45.455 0.00 0.00 0.00 5.52
1619 1654 5.233689 GCTTACACGGCTAGTAAGGTTTATG 59.766 44.000 20.28 3.04 45.31 1.90
1620 1655 4.133013 ACACGGCTAGTAAGGTTTATGG 57.867 45.455 0.00 0.00 0.00 2.74
1645 1680 9.676861 GGTTACAAGTGTATTTTTATAGGGAGT 57.323 33.333 0.00 0.00 0.00 3.85
1668 1703 2.835156 GGAGAGAAGGGAACTAGCAACT 59.165 50.000 0.00 0.00 42.68 3.16
1669 1704 3.368948 GGAGAGAAGGGAACTAGCAACTG 60.369 52.174 0.00 0.00 42.68 3.16
1714 1749 3.503800 ACCCTTGGTAACCAGAACTTC 57.496 47.619 0.00 0.00 33.81 3.01
1724 1759 8.603898 TGGTAACCAGAACTTCTTATGATCTA 57.396 34.615 0.00 0.00 0.00 1.98
1800 1835 4.844884 ACTTGCCTCCTTTAACCACTATC 58.155 43.478 0.00 0.00 0.00 2.08
1803 1838 2.470821 CCTCCTTTAACCACTATCGCG 58.529 52.381 0.00 0.00 0.00 5.87
1854 1889 8.223330 AGTAGGATGGATGCAAAGAAAGAATAT 58.777 33.333 0.00 0.00 0.00 1.28
1930 1965 5.490139 ACTAGATGTGAAATGATTTGCGG 57.510 39.130 0.00 0.00 0.00 5.69
1935 1970 2.884012 TGTGAAATGATTTGCGGTCACT 59.116 40.909 0.00 0.00 37.02 3.41
1944 1979 8.445275 AATGATTTGCGGTCACTTATACATAA 57.555 30.769 0.00 0.00 0.00 1.90
1945 1980 8.621532 ATGATTTGCGGTCACTTATACATAAT 57.378 30.769 0.00 0.00 0.00 1.28
1946 1981 9.719355 ATGATTTGCGGTCACTTATACATAATA 57.281 29.630 0.00 0.00 0.00 0.98
1972 2007 4.465660 TGAAATCCACCACCAAACCATATG 59.534 41.667 0.00 0.00 0.00 1.78
2035 2070 6.914259 TGTTTCAGTCATCTAGTGTGTAGAG 58.086 40.000 0.00 0.00 0.00 2.43
2037 2072 4.589908 TCAGTCATCTAGTGTGTAGAGCA 58.410 43.478 0.00 0.00 0.00 4.26
2056 2091 7.081526 AGAGCATTCATTAGTTCATGACAAC 57.918 36.000 0.00 0.00 32.68 3.32
2071 2106 3.995199 TGACAACAGCTTCCTAGTTCAG 58.005 45.455 0.00 0.00 0.00 3.02
2079 2114 7.483580 ACAGCTTCCTAGTTCAGTACTATTT 57.516 36.000 0.00 0.00 38.63 1.40
2080 2115 7.548967 ACAGCTTCCTAGTTCAGTACTATTTC 58.451 38.462 0.00 0.00 38.63 2.17
2096 2131 0.961019 TTTCTGTCCAAGCACATGCC 59.039 50.000 0.00 0.00 43.38 4.40
2100 2135 1.907807 GTCCAAGCACATGCCCCAA 60.908 57.895 0.00 0.00 43.38 4.12
2101 2136 1.907807 TCCAAGCACATGCCCCAAC 60.908 57.895 0.00 0.00 43.38 3.77
2114 2149 2.360483 TGCCCCAACGTATTGCATTATG 59.640 45.455 6.34 6.34 34.17 1.90
2185 2221 8.934023 TCACTTTGAAGGGTAATAATTCACTT 57.066 30.769 0.00 0.00 32.91 3.16
2195 2231 9.533831 AGGGTAATAATTCACTTCAACAAGATT 57.466 29.630 0.00 0.00 33.34 2.40
2263 2299 3.154827 TCCCTCGAGGCAAAATTTTCT 57.845 42.857 26.87 0.00 34.51 2.52
2267 2303 3.119708 CCTCGAGGCAAAATTTTCTGGAG 60.120 47.826 20.67 17.58 33.71 3.86
2346 2382 8.887264 TTGAAAGTAATTTCCAATTAGCCCTA 57.113 30.769 12.73 0.00 0.00 3.53
2433 2469 6.917477 TCATTGTAGTTCTTCATGTGTTTTGC 59.083 34.615 0.00 0.00 0.00 3.68
2444 2480 8.602328 TCTTCATGTGTTTTGCAATACTTTTTG 58.398 29.630 18.84 11.85 0.00 2.44
2445 2481 8.484641 TTCATGTGTTTTGCAATACTTTTTGA 57.515 26.923 18.84 13.49 0.00 2.69
2448 2484 9.160576 CATGTGTTTTGCAATACTTTTTGATTG 57.839 29.630 18.84 4.54 36.35 2.67
2449 2485 8.484641 TGTGTTTTGCAATACTTTTTGATTGA 57.515 26.923 18.84 0.00 35.46 2.57
2450 2486 9.107177 TGTGTTTTGCAATACTTTTTGATTGAT 57.893 25.926 18.84 0.00 35.46 2.57
2493 2532 7.506328 AACTGAAAAGCTTCGTAAATAACCT 57.494 32.000 0.00 0.00 33.94 3.50
2632 2672 1.209504 GGCACACCTTATCTAGCCACA 59.790 52.381 0.00 0.00 41.63 4.17
2652 2692 5.523552 CCACACATTTTCTACATCGCTATCA 59.476 40.000 0.00 0.00 0.00 2.15
2653 2693 6.037062 CCACACATTTTCTACATCGCTATCAA 59.963 38.462 0.00 0.00 0.00 2.57
2658 2698 6.676237 TTTTCTACATCGCTATCAATGCAA 57.324 33.333 0.00 0.00 0.00 4.08
2668 2708 6.331845 TCGCTATCAATGCAATCAATTTTGT 58.668 32.000 0.00 0.00 0.00 2.83
2669 2709 6.253942 TCGCTATCAATGCAATCAATTTTGTG 59.746 34.615 0.00 0.00 0.00 3.33
2684 2729 8.792830 TCAATTTTGTGTTTTTGTTTATCCCA 57.207 26.923 0.00 0.00 0.00 4.37
2741 2786 6.422701 TGGACAACAAAACGATCTAACTACAG 59.577 38.462 0.00 0.00 0.00 2.74
2902 2954 8.440021 CTTGCAAAGTTTGAAGTACATATGTC 57.560 34.615 19.82 4.47 39.70 3.06
2997 3062 1.913419 TGTTGGAGGGGTGAGGATAAC 59.087 52.381 0.00 0.00 0.00 1.89
3013 3078 0.618458 TAACGGCTTCCATGGAGCTT 59.382 50.000 25.57 18.65 0.00 3.74
3050 3115 7.914427 ACCACACTCCTAATCATATCACTAA 57.086 36.000 0.00 0.00 0.00 2.24
3053 3118 7.382110 CACACTCCTAATCATATCACTAAGGG 58.618 42.308 0.00 0.00 0.00 3.95
3060 3125 8.321353 CCTAATCATATCACTAAGGGTGCATTA 58.679 37.037 0.00 0.00 44.98 1.90
3069 3134 8.902540 TCACTAAGGGTGCATTATAGTAAATG 57.097 34.615 0.00 0.00 44.98 2.32
3071 3136 7.936847 CACTAAGGGTGCATTATAGTAAATGGA 59.063 37.037 0.00 0.00 39.22 3.41
3076 3141 8.227507 AGGGTGCATTATAGTAAATGGATTCTT 58.772 33.333 0.00 0.00 39.07 2.52
3169 3236 5.971895 AAAGAAATGCAAACACACATGTC 57.028 34.783 0.00 0.00 38.45 3.06
3176 3243 2.358898 GCAAACACACATGTCACTCCTT 59.641 45.455 0.00 0.00 38.45 3.36
3185 3252 6.017192 CACACATGTCACTCCTTATGTTTTCA 60.017 38.462 0.00 0.00 31.84 2.69
3304 3371 5.994054 AGATCAACCGATAGTTCCATGATTG 59.006 40.000 0.00 0.00 36.18 2.67
3319 3387 4.261994 CCATGATTGTTTCGTTGGGAACTT 60.262 41.667 0.00 0.00 33.42 2.66
3333 3401 5.476091 TGGGAACTTTTGTTTCTTTGTGT 57.524 34.783 0.00 0.00 43.66 3.72
3335 3403 5.011125 TGGGAACTTTTGTTTCTTTGTGTCA 59.989 36.000 0.00 0.00 43.66 3.58
3433 3501 9.120538 TGTTTGCTCTGTTACTTTCTTATTTCT 57.879 29.630 0.00 0.00 0.00 2.52
3486 3554 3.061295 CAGTATGCAACACACGACTCATC 59.939 47.826 0.00 0.00 0.00 2.92
3522 3590 5.240891 TGCTAGCTACTATGGATTTCATGC 58.759 41.667 17.23 0.00 37.30 4.06
3538 3606 2.239402 TCATGCCACCACTGATGTGTAT 59.761 45.455 0.00 0.00 42.34 2.29
3541 3609 1.065491 GCCACCACTGATGTGTATGGA 60.065 52.381 16.09 0.00 44.69 3.41
3546 3614 2.615447 CCACTGATGTGTATGGACATGC 59.385 50.000 0.00 0.00 42.34 4.06
3550 3618 1.942657 GATGTGTATGGACATGCGCTT 59.057 47.619 9.73 0.00 36.67 4.68
3567 3635 3.844099 GCGCTTAAACGTGGTCAATTAAG 59.156 43.478 0.00 9.72 38.04 1.85
3604 3672 1.426251 TTGGCCACAGTGGAGATGGT 61.426 55.000 24.96 0.00 40.96 3.55
3607 3675 1.888436 GCCACAGTGGAGATGGTCGA 61.888 60.000 24.96 0.00 40.96 4.20
3618 3686 3.691609 GGAGATGGTCGAAAATCAAGCTT 59.308 43.478 10.33 0.00 0.00 3.74
3624 3692 5.160641 TGGTCGAAAATCAAGCTTTAATGC 58.839 37.500 0.00 5.22 0.00 3.56
3626 3694 5.633182 GGTCGAAAATCAAGCTTTAATGCAA 59.367 36.000 15.00 1.62 34.99 4.08
3656 3724 6.491745 TGTTGGATGGCATGTAAGAAAACTTA 59.508 34.615 3.81 0.00 0.00 2.24
3710 3779 9.874215 GTGTTTATAACTGTTTTAGACCTCAAC 57.126 33.333 0.00 0.00 0.00 3.18
3711 3780 9.059260 TGTTTATAACTGTTTTAGACCTCAACC 57.941 33.333 0.00 0.00 0.00 3.77
3723 3793 1.076677 ACCTCAACCGAGACTCCCTAA 59.923 52.381 0.00 0.00 42.34 2.69
3787 3857 6.606234 TGTTGTCAAACTATAAAGAACGCA 57.394 33.333 0.00 0.00 37.19 5.24
3792 3862 6.580791 TGTCAAACTATAAAGAACGCAATTGC 59.419 34.615 20.76 20.76 37.78 3.56
3955 4025 7.658525 TTTATTTACCTACTGGACGGTATGA 57.341 36.000 1.39 0.00 35.81 2.15
4029 4099 9.639601 GATAGTAAGCTTACATACATATGTGCA 57.360 33.333 32.48 0.00 45.77 4.57
4066 4136 5.485353 TCCATGTAACAGAGGGATGGATATC 59.515 44.000 0.00 0.00 38.11 1.63
4113 4183 1.009829 GTCCAGGTTTCATAGCAGCG 58.990 55.000 0.00 0.00 0.00 5.18
4164 4234 4.438744 CGCATAAACCCATCTTCAAAGGTC 60.439 45.833 0.00 0.00 0.00 3.85
4457 4527 6.527423 ACATGAAAATTTTGAAGAGCACCAT 58.473 32.000 8.47 0.00 0.00 3.55
4491 4561 6.442513 AACTTTATAGTGAAAGCATCAGCC 57.557 37.500 0.00 0.00 39.60 4.85
4504 4574 1.130054 ATCAGCCGCTACATCCCCAT 61.130 55.000 0.00 0.00 0.00 4.00
4516 4586 2.270874 ATCCCCATGGTTGCGTCCTC 62.271 60.000 11.73 0.00 0.00 3.71
4526 4596 1.263217 GTTGCGTCCTCACAAAACGAT 59.737 47.619 0.00 0.00 38.65 3.73
4527 4597 1.588674 TGCGTCCTCACAAAACGATT 58.411 45.000 0.00 0.00 38.65 3.34
4540 4610 8.948853 TCACAAAACGATTCTAATTTGATCAC 57.051 30.769 0.00 0.00 36.52 3.06
4541 4611 7.744276 TCACAAAACGATTCTAATTTGATCACG 59.256 33.333 0.00 0.00 36.52 4.35
4547 4617 5.748630 CGATTCTAATTTGATCACGGACTCA 59.251 40.000 0.00 0.00 0.00 3.41
4566 4636 4.344102 ACTCAAAGTAGCTTACTCCACACA 59.656 41.667 0.00 0.00 38.26 3.72
4572 4642 7.849804 AAGTAGCTTACTCCACACAATATTG 57.150 36.000 14.01 14.01 38.26 1.90
4573 4643 6.349300 AGTAGCTTACTCCACACAATATTGG 58.651 40.000 19.37 10.68 32.47 3.16
4574 4644 3.947834 AGCTTACTCCACACAATATTGGC 59.052 43.478 19.37 8.78 32.37 4.52
4575 4645 3.242739 GCTTACTCCACACAATATTGGCG 60.243 47.826 19.37 12.13 32.37 5.69
4576 4646 2.489938 ACTCCACACAATATTGGCGT 57.510 45.000 19.37 12.74 32.37 5.68
4577 4647 2.083774 ACTCCACACAATATTGGCGTG 58.916 47.619 23.41 23.41 36.23 5.34
4638 4708 5.835113 ACCATTCTAATGTTTTGCGCTAT 57.165 34.783 9.73 0.00 34.60 2.97
4655 4725 6.734137 TGCGCTATAACCCATTCAAAATTAG 58.266 36.000 9.73 0.00 0.00 1.73
4682 4752 6.448006 TGTCAGTCTCTTACTCTTGCTTAAC 58.552 40.000 0.00 0.00 35.76 2.01
4688 4758 5.924825 TCTCTTACTCTTGCTTAACGTTTCC 59.075 40.000 5.91 0.00 0.00 3.13
4696 4766 3.508762 TGCTTAACGTTTCCGATCTCTC 58.491 45.455 5.91 0.00 37.88 3.20
4697 4767 3.057104 TGCTTAACGTTTCCGATCTCTCA 60.057 43.478 5.91 0.00 37.88 3.27
4715 4785 4.127171 TCTCAAAAGAACGACTTCCCAAG 58.873 43.478 0.00 0.00 37.93 3.61
4751 4821 1.071699 AGCAACTTCCCGTCTTAAGCA 59.928 47.619 0.00 0.00 0.00 3.91
4753 4823 2.076863 CAACTTCCCGTCTTAAGCAGG 58.923 52.381 0.00 3.40 0.00 4.85
4763 4833 4.038162 CCGTCTTAAGCAGGAAGTAGCTAT 59.962 45.833 9.60 0.00 40.90 2.97
4796 4866 5.664457 CTTGCCATCACTAGATCACACTAA 58.336 41.667 0.00 0.00 30.20 2.24
4802 4872 7.685398 GCCATCACTAGATCACACTAATTCTCA 60.685 40.741 0.00 0.00 30.20 3.27
4841 4911 9.109393 TCAAAAGATAGGTTCTAATTTGGATCG 57.891 33.333 0.00 0.00 34.79 3.69
4842 4912 8.345565 CAAAAGATAGGTTCTAATTTGGATCGG 58.654 37.037 0.00 0.00 32.24 4.18
4845 4915 2.850568 AGGTTCTAATTTGGATCGGGGT 59.149 45.455 0.00 0.00 0.00 4.95
4847 4917 4.475747 AGGTTCTAATTTGGATCGGGGTTA 59.524 41.667 0.00 0.00 0.00 2.85
4860 4930 6.502510 TGGATCGGGGTTATAAAATGGATCTA 59.497 38.462 13.24 7.98 31.96 1.98
4873 4943 5.715439 AATGGATCTAACACCCTGATCAA 57.285 39.130 0.00 0.00 38.55 2.57
4888 4958 8.840321 CACCCTGATCAACCAACTAATTAATAG 58.160 37.037 0.00 0.00 37.66 1.73
4895 4965 8.076910 TCAACCAACTAATTAATAGTACCCGA 57.923 34.615 0.00 0.00 44.22 5.14
4897 4967 6.820335 ACCAACTAATTAATAGTACCCGACC 58.180 40.000 0.00 0.00 44.22 4.79
4899 4969 7.784550 ACCAACTAATTAATAGTACCCGACCTA 59.215 37.037 0.00 0.00 44.22 3.08
4969 5042 1.788229 TATGAGGCATGGACCGAAGA 58.212 50.000 0.00 0.00 33.69 2.87
4976 5049 1.740718 GCATGGACCGAAGAACTCCTC 60.741 57.143 0.00 0.00 0.00 3.71
5037 5110 3.931907 TGATAGGATGACCAAAGTGGG 57.068 47.619 0.00 0.00 43.37 4.61
5354 5427 3.149005 TGTTAATTCCGGGTGCTTCTT 57.851 42.857 0.00 0.00 0.00 2.52
5506 5579 7.395190 TGCACATTAGCAATGAATTTACTCT 57.605 32.000 13.53 0.00 42.46 3.24
5507 5580 7.829725 TGCACATTAGCAATGAATTTACTCTT 58.170 30.769 13.53 0.00 42.46 2.85
5508 5581 8.306038 TGCACATTAGCAATGAATTTACTCTTT 58.694 29.630 13.53 0.00 42.46 2.52
5585 5661 5.592282 TGCACTAGAAATTGACAAAACTCCA 59.408 36.000 0.00 0.00 0.00 3.86
5591 5667 4.751767 AATTGACAAAACTCCAAAGGCA 57.248 36.364 0.00 0.00 0.00 4.75
5599 5676 5.183904 ACAAAACTCCAAAGGCATCTATCAC 59.816 40.000 0.00 0.00 0.00 3.06
5603 5680 1.331756 CCAAAGGCATCTATCACGCAC 59.668 52.381 0.00 0.00 0.00 5.34
5616 5693 7.754851 TCTATCACGCACACTAGGAATTATA 57.245 36.000 0.00 0.00 0.00 0.98
5646 5724 4.695396 ACAAATTGAGTGCAAATTGCTCA 58.305 34.783 19.34 12.26 44.78 4.26
5649 5727 4.530710 ATTGAGTGCAAATTGCTCATGT 57.469 36.364 19.34 4.97 45.31 3.21
5650 5728 3.564235 TGAGTGCAAATTGCTCATGTC 57.436 42.857 19.34 9.65 45.31 3.06
5670 5748 5.551760 GTCACCGATTTGACATGAAGATT 57.448 39.130 0.00 0.00 44.62 2.40
5672 5750 6.381801 GTCACCGATTTGACATGAAGATTTT 58.618 36.000 0.00 0.00 44.62 1.82
5677 5755 5.740569 CGATTTGACATGAAGATTTTGCGAT 59.259 36.000 0.00 0.00 0.00 4.58
5707 5785 4.088762 GCCACATGTCGCACCACG 62.089 66.667 10.82 0.00 45.62 4.94
5724 5802 5.176958 GCACCACGAAGGATGTATACAATAC 59.823 44.000 10.14 3.31 41.22 1.89
5736 5814 7.940137 GGATGTATACAATACCATGGGTTGTTA 59.060 37.037 30.51 21.91 37.09 2.41
5738 5816 8.911918 TGTATACAATACCATGGGTTGTTATC 57.088 34.615 30.51 22.54 37.09 1.75
5739 5817 7.658167 TGTATACAATACCATGGGTTGTTATCG 59.342 37.037 30.51 8.83 37.09 2.92
5740 5818 5.105567 ACAATACCATGGGTTGTTATCGA 57.894 39.130 24.15 0.00 37.09 3.59
5741 5819 5.123227 ACAATACCATGGGTTGTTATCGAG 58.877 41.667 24.15 7.83 37.09 4.04
5742 5820 5.104693 ACAATACCATGGGTTGTTATCGAGA 60.105 40.000 24.15 0.00 37.09 4.04
5743 5821 3.543680 ACCATGGGTTGTTATCGAGAG 57.456 47.619 18.09 0.00 27.29 3.20
5775 5856 2.919229 GGGTCGTAGTGTTTATGTCACG 59.081 50.000 0.00 0.00 40.28 4.35
5784 5865 4.561606 AGTGTTTATGTCACGCGTATTCTC 59.438 41.667 13.44 1.19 40.28 2.87
5803 5884 2.989840 CTCAGTCGTTGTTTAGCCTCTG 59.010 50.000 0.00 0.00 0.00 3.35
5812 5893 5.220228 CGTTGTTTAGCCTCTGATCTTTACG 60.220 44.000 0.00 0.00 0.00 3.18
5833 5914 0.605319 TCATGTTGAGGCGTTGTCCC 60.605 55.000 0.00 0.00 0.00 4.46
5835 5916 2.280592 GTTGAGGCGTTGTCCCGT 60.281 61.111 0.00 0.00 0.00 5.28
5839 5920 3.644399 GAGGCGTTGTCCCGTCCTC 62.644 68.421 0.00 0.00 40.88 3.71
5847 5928 0.544357 TGTCCCGTCCTCTGACCATT 60.544 55.000 0.00 0.00 38.32 3.16
5873 5954 3.007635 ACTTGAAAGGTGCTTATACGCC 58.992 45.455 0.00 0.00 40.71 5.68
5888 5969 2.125350 GCCAGGAGGACGAAGCTG 60.125 66.667 0.00 0.00 36.89 4.24
5890 5971 2.125350 CAGGAGGACGAAGCTGGC 60.125 66.667 0.00 0.00 0.00 4.85
5891 5972 3.764466 AGGAGGACGAAGCTGGCG 61.764 66.667 7.60 7.60 0.00 5.69
5901 5982 0.679960 GAAGCTGGCGGGTGGTAAAT 60.680 55.000 0.00 0.00 0.00 1.40
5910 5991 0.655733 GGGTGGTAAATCATGACGCG 59.344 55.000 3.53 3.53 0.00 6.01
5920 6001 1.154599 CATGACGCGACTTGTGTGC 60.155 57.895 15.93 0.00 42.62 4.57
5928 6009 0.163788 CGACTTGTGTGCCGATTGAC 59.836 55.000 0.00 0.00 0.00 3.18
5951 6032 0.035056 GAACCCCATGAGTCCACCTG 60.035 60.000 0.00 0.00 0.00 4.00
5971 6052 4.272504 CCTGTAAGCGTGTATAATGTTGGG 59.727 45.833 0.00 0.00 0.00 4.12
5991 6072 8.750298 TGTTGGGAAACATAGTAGAAAACAAAA 58.250 29.630 0.00 0.00 0.00 2.44
6030 6116 3.209410 CCCAGGAACACTATGAAGATGC 58.791 50.000 0.00 0.00 0.00 3.91
6080 6166 0.667487 CTCCGAGTTGCAGCGAAAGA 60.667 55.000 7.18 0.00 0.00 2.52
6085 6171 2.473540 CGAGTTGCAGCGAAAGAAGATG 60.474 50.000 0.00 0.00 0.00 2.90
6090 6176 1.322936 GCAGCGAAAGAAGATGAGTCG 59.677 52.381 0.00 0.00 34.89 4.18
6107 6193 3.603532 AGTCGGTGTAGATCGTACTTGA 58.396 45.455 0.00 0.00 0.00 3.02
6110 6196 4.005650 TCGGTGTAGATCGTACTTGAAGT 58.994 43.478 2.37 2.37 0.00 3.01
6120 6206 2.228343 CGTACTTGAAGTCCCTCGAACT 59.772 50.000 0.00 0.00 0.00 3.01
6121 6207 3.438087 CGTACTTGAAGTCCCTCGAACTA 59.562 47.826 0.00 0.00 0.00 2.24
6127 6213 6.039941 ACTTGAAGTCCCTCGAACTATAGATG 59.960 42.308 6.78 0.00 0.00 2.90
6139 6225 4.768130 ACTATAGATGAACGATCCCACG 57.232 45.455 6.78 0.00 39.31 4.94
6143 6229 0.921347 GATGAACGATCCCACGAACG 59.079 55.000 0.00 0.00 39.92 3.95
6146 6232 3.229156 AACGATCCCACGAACGGCA 62.229 57.895 0.00 0.00 38.50 5.69
6149 6235 2.358247 ATCCCACGAACGGCACAC 60.358 61.111 0.00 0.00 0.00 3.82
6168 6254 1.080025 GAACAGTCCCTCGAACGGG 60.080 63.158 3.26 3.26 46.13 5.28
6193 6279 0.246635 GAAAGCACGGCCTCTCTACA 59.753 55.000 0.00 0.00 0.00 2.74
6204 6290 2.873649 GCCTCTCTACAAGTTGCAAGCT 60.874 50.000 0.00 0.00 0.00 3.74
6208 6294 3.987868 TCTCTACAAGTTGCAAGCTTACG 59.012 43.478 0.00 0.00 0.00 3.18
6217 6303 2.063266 TGCAAGCTTACGGTCTTAACG 58.937 47.619 0.00 0.00 37.36 3.18
6221 6307 3.433513 AGCTTACGGTCTTAACGATCC 57.566 47.619 0.00 0.00 34.93 3.36
6222 6308 2.114825 GCTTACGGTCTTAACGATCCG 58.885 52.381 0.00 0.00 46.98 4.18
6225 6311 1.942712 CGGTCTTAACGATCCGGCG 60.943 63.158 0.00 0.00 39.41 6.46
6248 6334 2.349155 CGCTTCACCGTCCAAAACTAAC 60.349 50.000 0.00 0.00 0.00 2.34
6253 6339 1.941975 ACCGTCCAAAACTAACCGTTG 59.058 47.619 0.00 0.00 35.61 4.10
6255 6341 1.334329 CGTCCAAAACTAACCGTTGCC 60.334 52.381 0.00 0.00 35.61 4.52
6256 6342 0.945813 TCCAAAACTAACCGTTGCCG 59.054 50.000 0.00 0.00 35.61 5.69
6257 6343 0.945813 CCAAAACTAACCGTTGCCGA 59.054 50.000 0.00 0.00 35.61 5.54
6268 6354 2.232941 ACCGTTGCCGAAGAATTAGAGA 59.767 45.455 0.00 0.00 35.63 3.10
6269 6355 2.860735 CCGTTGCCGAAGAATTAGAGAG 59.139 50.000 0.00 0.00 35.63 3.20
6270 6356 2.860735 CGTTGCCGAAGAATTAGAGAGG 59.139 50.000 0.00 0.00 35.63 3.69
6287 6373 5.284582 AGAGAGGGAAGATTAGAACCACAT 58.715 41.667 0.00 0.00 0.00 3.21
6289 6375 6.903534 AGAGAGGGAAGATTAGAACCACATTA 59.096 38.462 0.00 0.00 0.00 1.90
6290 6376 7.070571 AGAGAGGGAAGATTAGAACCACATTAG 59.929 40.741 0.00 0.00 0.00 1.73
6291 6377 6.903534 AGAGGGAAGATTAGAACCACATTAGA 59.096 38.462 0.00 0.00 0.00 2.10
6347 6433 8.172352 TCTAGCTCTAATTGATCAACTAGGAC 57.828 38.462 20.57 13.97 0.00 3.85
6351 6437 6.481644 GCTCTAATTGATCAACTAGGACCAAG 59.518 42.308 20.57 12.67 0.00 3.61
6367 6453 6.189133 AGGACCAAGTAGAACTAGAACTAGG 58.811 44.000 12.54 0.81 37.49 3.02
6368 6454 6.011805 AGGACCAAGTAGAACTAGAACTAGGA 60.012 42.308 12.54 0.00 37.49 2.94
6369 6455 6.095300 GGACCAAGTAGAACTAGAACTAGGAC 59.905 46.154 12.54 6.62 37.49 3.85
6370 6456 6.792424 ACCAAGTAGAACTAGAACTAGGACT 58.208 40.000 12.54 12.14 37.49 3.85
6371 6457 7.926705 ACCAAGTAGAACTAGAACTAGGACTA 58.073 38.462 12.54 11.38 37.49 2.59
6372 6458 8.048514 ACCAAGTAGAACTAGAACTAGGACTAG 58.951 40.741 17.83 17.83 41.01 2.57
6373 6459 8.266473 CCAAGTAGAACTAGAACTAGGACTAGA 58.734 40.741 23.02 6.53 39.25 2.43
6374 6460 9.669887 CAAGTAGAACTAGAACTAGGACTAGAA 57.330 37.037 23.02 9.56 39.25 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.367512 ATGGCTCTCCCCCTCACC 60.368 66.667 0.00 0.00 0.00 4.02
1 2 2.750657 CCATGGCTCTCCCCCTCAC 61.751 68.421 0.00 0.00 0.00 3.51
2 3 2.367377 CCATGGCTCTCCCCCTCA 60.367 66.667 0.00 0.00 0.00 3.86
3 4 1.694169 TTCCATGGCTCTCCCCCTC 60.694 63.158 6.96 0.00 0.00 4.30
4 5 1.695597 CTTCCATGGCTCTCCCCCT 60.696 63.158 6.96 0.00 0.00 4.79
5 6 2.761465 CCTTCCATGGCTCTCCCCC 61.761 68.421 6.96 0.00 0.00 5.40
6 7 1.694169 TCCTTCCATGGCTCTCCCC 60.694 63.158 6.96 0.00 0.00 4.81
7 8 0.692419 TCTCCTTCCATGGCTCTCCC 60.692 60.000 6.96 0.00 0.00 4.30
8 9 1.072015 CATCTCCTTCCATGGCTCTCC 59.928 57.143 6.96 0.00 0.00 3.71
9 10 1.072015 CCATCTCCTTCCATGGCTCTC 59.928 57.143 6.96 0.00 33.37 3.20
10 11 1.138568 CCATCTCCTTCCATGGCTCT 58.861 55.000 6.96 0.00 33.37 4.09
11 12 0.110104 CCCATCTCCTTCCATGGCTC 59.890 60.000 6.96 0.00 38.67 4.70
12 13 1.358830 CCCCATCTCCTTCCATGGCT 61.359 60.000 6.96 0.00 38.67 4.75
13 14 1.152368 CCCCATCTCCTTCCATGGC 59.848 63.158 6.96 0.00 38.67 4.40
14 15 0.475906 GTCCCCATCTCCTTCCATGG 59.524 60.000 4.97 4.97 39.58 3.66
15 16 0.107456 CGTCCCCATCTCCTTCCATG 59.893 60.000 0.00 0.00 0.00 3.66
16 17 1.056700 CCGTCCCCATCTCCTTCCAT 61.057 60.000 0.00 0.00 0.00 3.41
17 18 1.689233 CCGTCCCCATCTCCTTCCA 60.689 63.158 0.00 0.00 0.00 3.53
18 19 2.444256 CCCGTCCCCATCTCCTTCC 61.444 68.421 0.00 0.00 0.00 3.46
19 20 2.444256 CCCCGTCCCCATCTCCTTC 61.444 68.421 0.00 0.00 0.00 3.46
20 21 2.366972 CCCCGTCCCCATCTCCTT 60.367 66.667 0.00 0.00 0.00 3.36
21 22 2.898472 CTTCCCCGTCCCCATCTCCT 62.898 65.000 0.00 0.00 0.00 3.69
22 23 2.366435 TTCCCCGTCCCCATCTCC 60.366 66.667 0.00 0.00 0.00 3.71
23 24 1.382695 TCTTCCCCGTCCCCATCTC 60.383 63.158 0.00 0.00 0.00 2.75
24 25 1.383248 CTCTTCCCCGTCCCCATCT 60.383 63.158 0.00 0.00 0.00 2.90
25 26 1.689582 ACTCTTCCCCGTCCCCATC 60.690 63.158 0.00 0.00 0.00 3.51
26 27 1.995626 CACTCTTCCCCGTCCCCAT 60.996 63.158 0.00 0.00 0.00 4.00
27 28 2.606519 CACTCTTCCCCGTCCCCA 60.607 66.667 0.00 0.00 0.00 4.96
28 29 2.284405 TCACTCTTCCCCGTCCCC 60.284 66.667 0.00 0.00 0.00 4.81
29 30 2.359967 CCTCACTCTTCCCCGTCCC 61.360 68.421 0.00 0.00 0.00 4.46
30 31 2.359967 CCCTCACTCTTCCCCGTCC 61.360 68.421 0.00 0.00 0.00 4.79
31 32 1.305046 TCCCTCACTCTTCCCCGTC 60.305 63.158 0.00 0.00 0.00 4.79
32 33 1.305381 CTCCCTCACTCTTCCCCGT 60.305 63.158 0.00 0.00 0.00 5.28
33 34 2.060980 CCTCCCTCACTCTTCCCCG 61.061 68.421 0.00 0.00 0.00 5.73
34 35 1.690985 CCCTCCCTCACTCTTCCCC 60.691 68.421 0.00 0.00 0.00 4.81
35 36 1.690985 CCCCTCCCTCACTCTTCCC 60.691 68.421 0.00 0.00 0.00 3.97
36 37 1.081277 ACCCCTCCCTCACTCTTCC 59.919 63.158 0.00 0.00 0.00 3.46
37 38 0.252284 TCACCCCTCCCTCACTCTTC 60.252 60.000 0.00 0.00 0.00 2.87
38 39 0.252467 CTCACCCCTCCCTCACTCTT 60.252 60.000 0.00 0.00 0.00 2.85
39 40 1.390125 CTCACCCCTCCCTCACTCT 59.610 63.158 0.00 0.00 0.00 3.24
40 41 1.687493 CCTCACCCCTCCCTCACTC 60.687 68.421 0.00 0.00 0.00 3.51
41 42 2.452114 CCTCACCCCTCCCTCACT 59.548 66.667 0.00 0.00 0.00 3.41
42 43 2.689034 CCCTCACCCCTCCCTCAC 60.689 72.222 0.00 0.00 0.00 3.51
43 44 4.024984 CCCCTCACCCCTCCCTCA 62.025 72.222 0.00 0.00 0.00 3.86
44 45 3.581141 AACCCCTCACCCCTCCCTC 62.581 68.421 0.00 0.00 0.00 4.30
45 46 3.552911 AACCCCTCACCCCTCCCT 61.553 66.667 0.00 0.00 0.00 4.20
46 47 3.339093 CAACCCCTCACCCCTCCC 61.339 72.222 0.00 0.00 0.00 4.30
47 48 4.048470 GCAACCCCTCACCCCTCC 62.048 72.222 0.00 0.00 0.00 4.30
48 49 4.410400 CGCAACCCCTCACCCCTC 62.410 72.222 0.00 0.00 0.00 4.30
68 69 2.281139 GGAGATGGCTAAGGGCGC 60.281 66.667 0.00 0.00 42.94 6.53
69 70 1.070445 CTGGAGATGGCTAAGGGCG 59.930 63.158 0.00 0.00 42.94 6.13
70 71 1.453669 CCTGGAGATGGCTAAGGGC 59.546 63.158 0.00 0.00 40.90 5.19
71 72 1.453669 GCCTGGAGATGGCTAAGGG 59.546 63.158 0.00 0.00 46.38 3.95
78 79 1.134280 CCACTAACTGCCTGGAGATGG 60.134 57.143 0.00 0.00 0.00 3.51
79 80 1.833630 TCCACTAACTGCCTGGAGATG 59.166 52.381 0.00 0.00 30.27 2.90
80 81 2.254152 TCCACTAACTGCCTGGAGAT 57.746 50.000 0.00 0.00 30.27 2.75
81 82 1.902508 CTTCCACTAACTGCCTGGAGA 59.097 52.381 0.00 0.00 35.47 3.71
82 83 1.677217 GCTTCCACTAACTGCCTGGAG 60.677 57.143 0.00 0.00 35.47 3.86
83 84 0.324943 GCTTCCACTAACTGCCTGGA 59.675 55.000 0.00 0.00 31.94 3.86
84 85 0.036732 TGCTTCCACTAACTGCCTGG 59.963 55.000 0.00 0.00 0.00 4.45
85 86 1.446907 CTGCTTCCACTAACTGCCTG 58.553 55.000 0.00 0.00 0.00 4.85
86 87 0.326264 CCTGCTTCCACTAACTGCCT 59.674 55.000 0.00 0.00 0.00 4.75
87 88 0.324943 TCCTGCTTCCACTAACTGCC 59.675 55.000 0.00 0.00 0.00 4.85
88 89 1.677217 CCTCCTGCTTCCACTAACTGC 60.677 57.143 0.00 0.00 0.00 4.40
89 90 1.625818 ACCTCCTGCTTCCACTAACTG 59.374 52.381 0.00 0.00 0.00 3.16
90 91 1.625818 CACCTCCTGCTTCCACTAACT 59.374 52.381 0.00 0.00 0.00 2.24
91 92 1.339151 CCACCTCCTGCTTCCACTAAC 60.339 57.143 0.00 0.00 0.00 2.34
92 93 0.984230 CCACCTCCTGCTTCCACTAA 59.016 55.000 0.00 0.00 0.00 2.24
93 94 1.553690 GCCACCTCCTGCTTCCACTA 61.554 60.000 0.00 0.00 0.00 2.74
94 95 2.900106 GCCACCTCCTGCTTCCACT 61.900 63.158 0.00 0.00 0.00 4.00
95 96 2.360475 GCCACCTCCTGCTTCCAC 60.360 66.667 0.00 0.00 0.00 4.02
96 97 3.650950 GGCCACCTCCTGCTTCCA 61.651 66.667 0.00 0.00 0.00 3.53
97 98 4.432741 GGGCCACCTCCTGCTTCC 62.433 72.222 4.39 0.00 0.00 3.46
98 99 2.988839 ATGGGCCACCTCCTGCTTC 61.989 63.158 9.28 0.00 37.76 3.86
99 100 2.943265 ATGGGCCACCTCCTGCTT 60.943 61.111 9.28 0.00 37.76 3.91
100 101 3.736224 CATGGGCCACCTCCTGCT 61.736 66.667 9.28 0.00 37.76 4.24
101 102 4.828296 CCATGGGCCACCTCCTGC 62.828 72.222 9.28 0.00 37.76 4.85
102 103 2.153898 TTTCCATGGGCCACCTCCTG 62.154 60.000 9.28 1.85 37.76 3.86
103 104 1.442886 TTTTCCATGGGCCACCTCCT 61.443 55.000 9.28 0.00 37.76 3.69
104 105 0.972471 CTTTTCCATGGGCCACCTCC 60.972 60.000 9.28 0.00 37.76 4.30
105 106 1.607801 GCTTTTCCATGGGCCACCTC 61.608 60.000 9.28 0.00 37.76 3.85
106 107 1.610379 GCTTTTCCATGGGCCACCT 60.610 57.895 9.28 0.00 37.76 4.00
107 108 1.479368 TTGCTTTTCCATGGGCCACC 61.479 55.000 9.28 0.00 37.24 4.61
108 109 0.320683 GTTGCTTTTCCATGGGCCAC 60.321 55.000 9.28 5.54 0.00 5.01
109 110 1.479368 GGTTGCTTTTCCATGGGCCA 61.479 55.000 9.61 9.61 0.00 5.36
139 140 0.750182 CACCAAAACCGTGGGTCAGT 60.750 55.000 0.00 0.00 43.56 3.41
156 157 0.669625 GCGTGGGTGTCCTAAGTCAC 60.670 60.000 0.00 0.00 0.00 3.67
157 158 1.116536 TGCGTGGGTGTCCTAAGTCA 61.117 55.000 0.00 0.00 0.00 3.41
173 174 0.519519 TGCCCGTCTATTTTTGTGCG 59.480 50.000 0.00 0.00 0.00 5.34
190 191 2.052237 CGCCGTGTGTGTTTCTGC 60.052 61.111 0.00 0.00 0.00 4.26
191 192 1.275657 GACGCCGTGTGTGTTTCTG 59.724 57.895 0.00 0.00 37.96 3.02
209 210 0.537371 AACCCCTTTCCAGTTCGCTG 60.537 55.000 0.00 0.00 44.59 5.18
214 215 0.554305 AACCGAACCCCTTTCCAGTT 59.446 50.000 0.00 0.00 0.00 3.16
216 217 1.699730 AAAACCGAACCCCTTTCCAG 58.300 50.000 0.00 0.00 0.00 3.86
217 218 2.175284 AGTAAAACCGAACCCCTTTCCA 59.825 45.455 0.00 0.00 0.00 3.53
220 221 3.216800 GACAGTAAAACCGAACCCCTTT 58.783 45.455 0.00 0.00 0.00 3.11
223 224 1.072806 AGGACAGTAAAACCGAACCCC 59.927 52.381 0.00 0.00 0.00 4.95
262 263 2.546795 GCTGCAGAGTACTCACACAAGT 60.547 50.000 24.44 0.00 0.00 3.16
275 276 0.964700 TCCATCGATAGGCTGCAGAG 59.035 55.000 20.43 0.57 0.00 3.35
277 278 1.506493 GTTCCATCGATAGGCTGCAG 58.494 55.000 10.11 10.11 0.00 4.41
282 283 4.003648 CCTAATTGGTTCCATCGATAGGC 58.996 47.826 0.00 0.00 0.00 3.93
285 286 3.244770 GGCCCTAATTGGTTCCATCGATA 60.245 47.826 0.00 0.00 0.00 2.92
316 317 2.027625 GGAGAAGTGGTGCGAACGG 61.028 63.158 0.00 0.00 0.00 4.44
357 359 1.893919 GAAAGGTGGAGAGGAGCGCT 61.894 60.000 11.27 11.27 0.00 5.92
359 361 0.539051 ATGAAAGGTGGAGAGGAGCG 59.461 55.000 0.00 0.00 0.00 5.03
373 375 8.240682 GCACTACCATTTGTAATGTGTATGAAA 58.759 33.333 0.00 0.00 31.52 2.69
381 383 5.767665 TCACAAGCACTACCATTTGTAATGT 59.232 36.000 0.00 0.00 32.86 2.71
382 384 6.252967 TCACAAGCACTACCATTTGTAATG 57.747 37.500 0.00 0.00 32.86 1.90
444 446 7.341445 AGCTTTAAATGTACAACCAAACTCA 57.659 32.000 0.00 0.00 0.00 3.41
496 498 6.015265 CCATATGCCATTGTTCCATGAATGTA 60.015 38.462 0.00 0.00 0.00 2.29
501 503 3.637694 CACCATATGCCATTGTTCCATGA 59.362 43.478 0.00 0.00 0.00 3.07
518 520 5.069914 TCGCAATTATAGTAGTGGACACCAT 59.930 40.000 0.00 0.00 35.28 3.55
540 542 1.625616 AAACGTAGTGCGAATCCTCG 58.374 50.000 7.88 0.00 45.00 4.63
555 557 2.544486 GGTAGGCGGGTACTGATAAACG 60.544 54.545 0.00 0.00 36.31 3.60
557 559 2.696707 CAGGTAGGCGGGTACTGATAAA 59.303 50.000 0.00 0.00 36.31 1.40
613 615 5.053978 TCTAGAGAGGTATGCACATGAGA 57.946 43.478 0.00 0.00 0.00 3.27
704 716 9.078753 CACAAACACACACGTATATCTTACATA 57.921 33.333 0.00 0.00 0.00 2.29
716 728 1.069568 CACACACACAAACACACACGT 60.070 47.619 0.00 0.00 0.00 4.49
721 733 1.950216 ACACACACACACACAAACACA 59.050 42.857 0.00 0.00 0.00 3.72
722 734 2.287308 ACACACACACACACACAAACAC 60.287 45.455 0.00 0.00 0.00 3.32
723 735 1.950216 ACACACACACACACACAAACA 59.050 42.857 0.00 0.00 0.00 2.83
724 736 2.287308 ACACACACACACACACACAAAC 60.287 45.455 0.00 0.00 0.00 2.93
725 737 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
726 738 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
727 739 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
728 740 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
729 741 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
730 742 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
731 743 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
732 744 6.961359 ATATATACACACACACACACACAC 57.039 37.500 0.00 0.00 0.00 3.82
942 954 5.691595 AGGCGGAACCCCCTATATATATA 57.308 43.478 2.49 2.49 40.58 0.86
943 955 4.571366 AGGCGGAACCCCCTATATATAT 57.429 45.455 0.00 0.00 40.58 0.86
964 976 5.046376 TCAGGATGAAGAGCACAATGTTCTA 60.046 40.000 0.00 0.00 45.97 2.10
987 999 0.903942 TGGCCATTTTGGGATGCTTC 59.096 50.000 0.00 0.00 38.19 3.86
1090 1102 9.959749 TTGTATTCAAACATTTACCTCTTGAAC 57.040 29.630 0.00 0.00 38.45 3.18
1119 1131 8.995220 ACAAGCACGTAAAGTTCTATGAAATAA 58.005 29.630 0.00 0.00 0.00 1.40
1137 1149 0.307760 GAACAACCCTCACAAGCACG 59.692 55.000 0.00 0.00 0.00 5.34
1236 1252 7.509546 CCTATATTTAACTCCACCACACATCT 58.490 38.462 0.00 0.00 0.00 2.90
1242 1258 6.465084 CCTAGCCTATATTTAACTCCACCAC 58.535 44.000 0.00 0.00 0.00 4.16
1287 1303 6.029431 TGGTAGCACCTATATGACCCATTAT 58.971 40.000 6.83 0.00 39.58 1.28
1346 1379 1.270625 CGAGGTTCCTACTGTTTGCCA 60.271 52.381 0.00 0.00 0.00 4.92
1347 1380 1.270678 ACGAGGTTCCTACTGTTTGCC 60.271 52.381 0.00 0.00 0.00 4.52
1348 1381 2.067013 GACGAGGTTCCTACTGTTTGC 58.933 52.381 0.00 0.00 0.00 3.68
1349 1382 3.576648 GAGACGAGGTTCCTACTGTTTG 58.423 50.000 0.00 0.00 0.00 2.93
1350 1383 2.228343 CGAGACGAGGTTCCTACTGTTT 59.772 50.000 0.00 0.00 0.00 2.83
1351 1384 1.811359 CGAGACGAGGTTCCTACTGTT 59.189 52.381 0.00 0.00 0.00 3.16
1362 1395 2.122167 CCCTCCTTCCGAGACGAGG 61.122 68.421 0.00 0.00 41.63 4.63
1364 1397 1.378250 GTCCCTCCTTCCGAGACGA 60.378 63.158 0.00 0.00 41.63 4.20
1365 1398 1.378124 GAGTCCCTCCTTCCGAGACG 61.378 65.000 0.00 0.00 41.63 4.18
1366 1399 0.033894 AGAGTCCCTCCTTCCGAGAC 60.034 60.000 0.00 0.00 41.63 3.36
1367 1400 1.592948 TAGAGTCCCTCCTTCCGAGA 58.407 55.000 0.00 0.00 41.63 4.04
1368 1401 2.092321 TCTTAGAGTCCCTCCTTCCGAG 60.092 54.545 0.00 0.00 38.46 4.63
1369 1402 1.921049 TCTTAGAGTCCCTCCTTCCGA 59.079 52.381 0.00 0.00 0.00 4.55
1370 1403 2.025898 GTCTTAGAGTCCCTCCTTCCG 58.974 57.143 0.00 0.00 0.00 4.30
1371 1404 3.103080 TGTCTTAGAGTCCCTCCTTCC 57.897 52.381 0.00 0.00 0.00 3.46
1377 1412 2.045885 TGGGGATTGTCTTAGAGTCCCT 59.954 50.000 19.92 0.00 46.26 4.20
1401 1436 7.568267 AGAGTGCGATATATTTGTAACATCG 57.432 36.000 0.00 0.00 40.99 3.84
1410 1445 6.357367 AGGAACCAAAGAGTGCGATATATTT 58.643 36.000 0.00 0.00 0.00 1.40
1413 1448 6.665992 ATAGGAACCAAAGAGTGCGATATA 57.334 37.500 0.00 0.00 0.00 0.86
1422 1457 7.521669 AGATGGGAAATATAGGAACCAAAGAG 58.478 38.462 0.00 0.00 0.00 2.85
1518 1553 8.857098 AGAAACTGTGTACTCAGACTAAATACA 58.143 33.333 27.10 3.36 38.63 2.29
1527 1562 7.915293 TTTTCAAAGAAACTGTGTACTCAGA 57.085 32.000 27.10 3.94 38.63 3.27
1537 1572 5.185828 CCCCCTAGGATTTTCAAAGAAACTG 59.814 44.000 11.48 0.00 38.24 3.16
1572 1607 7.715657 AGCAGTCTAATCAAATTTGTTCAACA 58.284 30.769 17.47 0.00 0.00 3.33
1573 1608 8.579682 AAGCAGTCTAATCAAATTTGTTCAAC 57.420 30.769 17.47 10.58 0.00 3.18
1574 1609 9.677567 GTAAGCAGTCTAATCAAATTTGTTCAA 57.322 29.630 17.47 0.00 0.00 2.69
1586 1621 3.166489 AGCCGTGTAAGCAGTCTAATC 57.834 47.619 0.00 0.00 0.00 1.75
1603 1638 7.065443 CACTTGTAACCATAAACCTTACTAGCC 59.935 40.741 0.00 0.00 30.80 3.93
1619 1654 9.676861 ACTCCCTATAAAAATACACTTGTAACC 57.323 33.333 0.00 0.00 33.76 2.85
1632 1667 5.428783 CCTTCTCTCCCACTCCCTATAAAAA 59.571 44.000 0.00 0.00 0.00 1.94
1645 1680 1.078823 TGCTAGTTCCCTTCTCTCCCA 59.921 52.381 0.00 0.00 0.00 4.37
1668 1703 7.661127 ACTATGTACTTGACGTAATTTTGCA 57.339 32.000 0.00 0.00 0.00 4.08
1669 1704 9.469239 GTAACTATGTACTTGACGTAATTTTGC 57.531 33.333 0.00 0.00 0.00 3.68
1779 1814 3.871594 CGATAGTGGTTAAAGGAGGCAAG 59.128 47.826 0.00 0.00 0.00 4.01
1783 1818 2.470821 CGCGATAGTGGTTAAAGGAGG 58.529 52.381 0.00 0.00 44.51 4.30
1800 1835 0.643310 TATTAGCAAACGAGCACGCG 59.357 50.000 3.53 3.53 43.96 6.01
1854 1889 9.023962 AGGTAAAGATCAATTGCAAATAGTTCA 57.976 29.630 1.71 0.00 0.00 3.18
1882 1917 6.270000 CCCTTTCCACATGGATCTACATACTA 59.730 42.308 0.34 0.00 44.98 1.82
1896 1931 4.104086 TCACATCTAGTCCCTTTCCACAT 58.896 43.478 0.00 0.00 0.00 3.21
1897 1932 3.516586 TCACATCTAGTCCCTTTCCACA 58.483 45.455 0.00 0.00 0.00 4.17
1907 1942 5.065218 ACCGCAAATCATTTCACATCTAGTC 59.935 40.000 0.00 0.00 0.00 2.59
1944 1979 5.545723 TGGTTTGGTGGTGGATTTCAATTAT 59.454 36.000 0.00 0.00 0.00 1.28
1945 1980 4.901849 TGGTTTGGTGGTGGATTTCAATTA 59.098 37.500 0.00 0.00 0.00 1.40
1946 1981 3.713764 TGGTTTGGTGGTGGATTTCAATT 59.286 39.130 0.00 0.00 0.00 2.32
1972 2007 5.611796 TCAATGAACAATGCTGACTACAC 57.388 39.130 0.00 0.00 0.00 2.90
2028 2063 7.278646 TGTCATGAACTAATGAATGCTCTACAC 59.721 37.037 0.00 0.00 38.28 2.90
2035 2070 5.514204 GCTGTTGTCATGAACTAATGAATGC 59.486 40.000 0.00 0.00 38.28 3.56
2037 2072 7.362401 GGAAGCTGTTGTCATGAACTAATGAAT 60.362 37.037 0.00 0.00 38.28 2.57
2056 2091 7.704472 CAGAAATAGTACTGAACTAGGAAGCTG 59.296 40.741 5.39 0.00 43.90 4.24
2071 2106 5.447818 GCATGTGCTTGGACAGAAATAGTAC 60.448 44.000 1.07 0.00 38.21 2.73
2079 2114 1.303561 GGGCATGTGCTTGGACAGA 60.304 57.895 4.84 0.00 41.70 3.41
2080 2115 2.345760 GGGGCATGTGCTTGGACAG 61.346 63.158 4.84 0.00 41.70 3.51
2096 2131 4.497340 GGTGTCATAATGCAATACGTTGGG 60.497 45.833 0.00 0.00 35.83 4.12
2100 2135 5.122519 TGATGGTGTCATAATGCAATACGT 58.877 37.500 0.00 0.00 32.98 3.57
2101 2136 5.671742 TGATGGTGTCATAATGCAATACG 57.328 39.130 0.00 0.00 32.98 3.06
2114 2149 7.385752 ACATGAAAATTTGATGTTGATGGTGTC 59.614 33.333 5.01 0.00 0.00 3.67
2164 2200 9.137459 TGTTGAAGTGAATTATTACCCTTCAAA 57.863 29.630 18.78 11.63 45.25 2.69
2185 2221 8.682710 GCTAAACCATATACCAAATCTTGTTGA 58.317 33.333 0.00 0.00 0.00 3.18
2204 2240 3.311322 GGCAACTTTTGTTTGGCTAAACC 59.689 43.478 21.26 5.82 44.37 3.27
2217 2253 2.101415 GACTTCAGGCTTGGCAACTTTT 59.899 45.455 0.00 0.00 37.61 2.27
2218 2254 1.683385 GACTTCAGGCTTGGCAACTTT 59.317 47.619 0.00 0.00 37.61 2.66
2263 2299 6.830324 CACCAGATGAATTATTTCCTTCTCCA 59.170 38.462 0.00 0.00 0.00 3.86
2267 2303 8.738645 AGTACACCAGATGAATTATTTCCTTC 57.261 34.615 0.00 0.00 0.00 3.46
2318 2354 9.750125 GGGCTAATTGGAAATTACTTTCAATAG 57.250 33.333 7.73 5.36 42.17 1.73
2329 2365 6.737608 TGTAACCTAGGGCTAATTGGAAATT 58.262 36.000 14.81 0.00 0.00 1.82
2334 2370 3.458487 ACCTGTAACCTAGGGCTAATTGG 59.542 47.826 14.81 8.62 39.71 3.16
2337 2373 3.732595 ACACCTGTAACCTAGGGCTAAT 58.267 45.455 14.81 0.00 39.71 1.73
2346 2382 7.231467 ACATTTAGATGAAACACCTGTAACCT 58.769 34.615 0.00 0.00 36.73 3.50
2409 2445 6.696583 TGCAAAACACATGAAGAACTACAATG 59.303 34.615 0.00 0.00 0.00 2.82
2448 2484 8.971321 TCAGTTTACAACTACACGAAACTTATC 58.029 33.333 0.00 0.00 40.46 1.75
2449 2485 8.876275 TCAGTTTACAACTACACGAAACTTAT 57.124 30.769 0.00 0.00 40.46 1.73
2450 2486 8.700722 TTCAGTTTACAACTACACGAAACTTA 57.299 30.769 0.00 0.00 40.46 2.24
2451 2487 7.599630 TTCAGTTTACAACTACACGAAACTT 57.400 32.000 0.00 0.00 40.46 2.66
2452 2488 7.599630 TTTCAGTTTACAACTACACGAAACT 57.400 32.000 0.00 0.00 40.46 2.66
2453 2489 7.045160 GCTTTTCAGTTTACAACTACACGAAAC 60.045 37.037 0.00 0.00 40.46 2.78
2456 2492 5.813672 AGCTTTTCAGTTTACAACTACACGA 59.186 36.000 0.00 0.00 40.46 4.35
2457 2493 6.044512 AGCTTTTCAGTTTACAACTACACG 57.955 37.500 0.00 0.00 40.46 4.49
2458 2494 6.627671 CGAAGCTTTTCAGTTTACAACTACAC 59.372 38.462 0.00 0.00 40.46 2.90
2609 2649 2.158769 TGGCTAGATAAGGTGTGCCATG 60.159 50.000 0.00 0.00 44.35 3.66
2632 2672 6.260714 TGCATTGATAGCGATGTAGAAAATGT 59.739 34.615 9.88 0.00 38.05 2.71
2652 2692 8.983307 AACAAAAACACAAAATTGATTGCATT 57.017 23.077 0.00 0.00 33.52 3.56
2653 2693 8.983307 AAACAAAAACACAAAATTGATTGCAT 57.017 23.077 0.00 0.00 33.52 3.96
2658 2698 9.401058 TGGGATAAACAAAAACACAAAATTGAT 57.599 25.926 0.00 0.00 0.00 2.57
2692 2737 7.095940 CCAGCAAAGTTTGAAGTTCATATGTTG 60.096 37.037 19.82 10.86 0.00 3.33
2856 2908 9.730420 TGCAAGTCAAATAAACTTTAGAACTTC 57.270 29.630 0.00 0.00 34.79 3.01
2875 2927 8.076178 ACATATGTACTTCAAACTTTGCAAGTC 58.924 33.333 6.56 11.59 41.91 3.01
2895 2947 8.593057 GTTTCTCTCAAATGAAACGACATATG 57.407 34.615 0.00 0.00 41.33 1.78
2930 2995 9.961265 GCCAACTAACTTATTACTTGAAAGTTT 57.039 29.630 0.21 0.00 42.06 2.66
2931 2996 9.350951 AGCCAACTAACTTATTACTTGAAAGTT 57.649 29.630 0.21 5.19 43.75 2.66
2932 2997 8.919777 AGCCAACTAACTTATTACTTGAAAGT 57.080 30.769 0.71 0.71 42.91 2.66
2959 3024 5.051816 CCAACATTGCTTTGAGATTTGTGT 58.948 37.500 0.00 0.00 0.00 3.72
2997 3062 2.117156 CCAAGCTCCATGGAAGCCG 61.117 63.158 24.08 17.97 40.56 5.52
3013 3078 0.107831 GTGTGGTTGTCTGTAGGCCA 59.892 55.000 5.01 0.00 0.00 5.36
3050 3115 7.759607 AGAATCCATTTACTATAATGCACCCT 58.240 34.615 0.00 0.00 34.81 4.34
3139 3206 8.131100 TGTGTGTTTGCATTTCTTTTTCAAAAA 58.869 25.926 0.00 0.00 0.00 1.94
3141 3208 7.194607 TGTGTGTTTGCATTTCTTTTTCAAA 57.805 28.000 0.00 0.00 0.00 2.69
3185 3252 7.429633 TGTGTTCGAATCATTACATGGTTTTT 58.570 30.769 0.00 0.00 32.79 1.94
3206 3273 9.804758 GATAGCTTACTTATCTACTGTTTGTGT 57.195 33.333 0.00 0.00 0.00 3.72
3272 3339 9.090103 TGGAACTATCGGTTGATCTTAGATTAT 57.910 33.333 0.00 0.00 38.41 1.28
3288 3355 5.718649 ACGAAACAATCATGGAACTATCG 57.281 39.130 0.00 0.20 0.00 2.92
3293 3360 3.254657 TCCCAACGAAACAATCATGGAAC 59.745 43.478 0.00 0.00 37.01 3.62
3304 3371 5.165676 AGAAACAAAAGTTCCCAACGAAAC 58.834 37.500 0.00 0.00 36.23 2.78
3319 3387 4.020662 AGCCCTTTGACACAAAGAAACAAA 60.021 37.500 20.94 0.00 0.00 2.83
3333 3401 0.472471 AGTTCCGTTCAGCCCTTTGA 59.528 50.000 0.00 0.00 0.00 2.69
3335 3403 2.618045 CCATAGTTCCGTTCAGCCCTTT 60.618 50.000 0.00 0.00 0.00 3.11
3399 3467 4.763793 AGTAACAGAGCAAACATGCATCTT 59.236 37.500 0.00 0.00 37.25 2.40
3433 3501 8.946085 GTGAACACATCCAAATTGATAAGACTA 58.054 33.333 0.00 0.00 0.00 2.59
3434 3502 7.094205 GGTGAACACATCCAAATTGATAAGACT 60.094 37.037 7.25 0.00 0.00 3.24
3442 3510 3.680937 GCATGGTGAACACATCCAAATTG 59.319 43.478 7.25 0.00 34.80 2.32
3475 3543 2.711922 GCCTCCCGATGAGTCGTGT 61.712 63.158 0.00 0.00 46.25 4.49
3538 3606 0.515127 CACGTTTAAGCGCATGTCCA 59.485 50.000 11.47 0.00 34.88 4.02
3541 3609 0.515564 GACCACGTTTAAGCGCATGT 59.484 50.000 11.47 6.37 34.88 3.21
3546 3614 5.025986 ACTTAATTGACCACGTTTAAGCG 57.974 39.130 10.36 10.36 35.87 4.68
3550 3618 4.056740 TGCGACTTAATTGACCACGTTTA 58.943 39.130 0.00 0.00 0.00 2.01
3567 3635 0.958822 AACCCAAATTCCACTGCGAC 59.041 50.000 0.00 0.00 0.00 5.19
3604 3672 7.887996 AATTGCATTAAAGCTTGATTTTCGA 57.112 28.000 0.00 0.00 34.99 3.71
3607 3675 9.492973 ACACTAATTGCATTAAAGCTTGATTTT 57.507 25.926 0.00 0.00 34.99 1.82
3618 3686 5.186603 TGCCATCCAACACTAATTGCATTAA 59.813 36.000 0.00 0.00 0.00 1.40
3624 3692 4.724074 ACATGCCATCCAACACTAATTG 57.276 40.909 0.00 0.00 0.00 2.32
3626 3694 5.754782 TCTTACATGCCATCCAACACTAAT 58.245 37.500 0.00 0.00 0.00 1.73
3710 3779 3.738590 GCTAGCTTTTTAGGGAGTCTCGG 60.739 52.174 7.70 0.00 0.00 4.63
3711 3780 3.131400 AGCTAGCTTTTTAGGGAGTCTCG 59.869 47.826 12.68 0.00 0.00 4.04
3723 3793 6.659668 CCCCTAGAAAAACTTAGCTAGCTTTT 59.340 38.462 24.88 16.58 35.42 2.27
3765 3835 8.417176 CAATTGCGTTCTTTATAGTTTGACAAC 58.583 33.333 0.00 0.00 0.00 3.32
3785 3855 9.229784 CATAAATGGAAGATATATCGCAATTGC 57.770 33.333 20.76 20.76 37.78 3.56
3821 3891 6.769341 AGTAACAAAAAGTAAGGGTGTACCAG 59.231 38.462 3.11 0.00 43.89 4.00
3879 3949 9.334947 CTGGAGCAATCTAAAATGAAGAGATAA 57.665 33.333 0.00 0.00 29.71 1.75
3986 4056 8.040132 GCTTACTATCATAGGCAGATCATTTCT 58.960 37.037 0.00 0.00 33.90 2.52
4066 4136 2.299013 TGTTGTAGCACCCAGTACTCTG 59.701 50.000 0.00 0.00 41.01 3.35
4098 4168 0.250234 TGCTCGCTGCTATGAAACCT 59.750 50.000 0.00 0.00 43.37 3.50
4117 4187 0.818296 CCTGGAGTAACAGTAGCGCT 59.182 55.000 17.26 17.26 36.75 5.92
4134 4204 0.839946 ATGGGTTTATGCGAGCTCCT 59.160 50.000 8.47 0.00 0.00 3.69
4263 4333 7.399245 TTTTGCTGGGTATTTAGTGATTACC 57.601 36.000 0.00 0.00 34.77 2.85
4357 4427 6.931838 ACAACGAGTAGAACATTCCTTCATA 58.068 36.000 0.00 0.00 0.00 2.15
4358 4428 5.794894 ACAACGAGTAGAACATTCCTTCAT 58.205 37.500 0.00 0.00 0.00 2.57
4359 4429 5.209818 ACAACGAGTAGAACATTCCTTCA 57.790 39.130 0.00 0.00 0.00 3.02
4360 4430 6.018180 ACAAACAACGAGTAGAACATTCCTTC 60.018 38.462 0.00 0.00 0.00 3.46
4361 4431 5.820947 ACAAACAACGAGTAGAACATTCCTT 59.179 36.000 0.00 0.00 0.00 3.36
4362 4432 5.365619 ACAAACAACGAGTAGAACATTCCT 58.634 37.500 0.00 0.00 0.00 3.36
4441 4511 5.809001 TCTAGTGATGGTGCTCTTCAAAAT 58.191 37.500 0.00 0.00 32.38 1.82
4446 4516 4.727507 TTCTCTAGTGATGGTGCTCTTC 57.272 45.455 0.00 0.00 0.00 2.87
4448 4518 4.530161 AGTTTTCTCTAGTGATGGTGCTCT 59.470 41.667 0.00 0.00 0.00 4.09
4491 4561 1.447317 GCAACCATGGGGATGTAGCG 61.447 60.000 18.09 0.00 39.08 4.26
4504 4574 0.736053 GTTTTGTGAGGACGCAACCA 59.264 50.000 0.00 0.00 44.51 3.67
4516 4586 7.007367 CCGTGATCAAATTAGAATCGTTTTGTG 59.993 37.037 0.00 0.00 32.33 3.33
4526 4596 6.934645 ACTTTGAGTCCGTGATCAAATTAGAA 59.065 34.615 0.00 0.00 42.72 2.10
4527 4597 6.464222 ACTTTGAGTCCGTGATCAAATTAGA 58.536 36.000 0.00 0.00 42.72 2.10
4540 4610 3.192844 TGGAGTAAGCTACTTTGAGTCCG 59.807 47.826 0.00 0.00 39.59 4.79
4541 4611 4.021368 TGTGGAGTAAGCTACTTTGAGTCC 60.021 45.833 0.00 0.00 39.59 3.85
4547 4617 7.336931 CCAATATTGTGTGGAGTAAGCTACTTT 59.663 37.037 14.25 0.00 39.59 2.66
4602 4672 8.504005 ACATTAGAATGGTTCGACAACTTTAAG 58.496 33.333 7.16 0.00 40.70 1.85
4608 4678 6.129194 GCAAAACATTAGAATGGTTCGACAAC 60.129 38.462 6.01 0.00 45.09 3.32
4638 4708 7.178274 ACTGACATGCTAATTTTGAATGGGTTA 59.822 33.333 4.21 0.00 0.00 2.85
4655 4725 3.616379 GCAAGAGTAAGAGACTGACATGC 59.384 47.826 0.00 0.00 39.06 4.06
4688 4758 4.324936 GGAAGTCGTTCTTTTGAGAGATCG 59.675 45.833 0.00 0.00 39.18 3.69
4696 4766 4.632538 AACTTGGGAAGTCGTTCTTTTG 57.367 40.909 0.00 0.00 41.91 2.44
4697 4767 4.948004 AGAAACTTGGGAAGTCGTTCTTTT 59.052 37.500 0.00 0.00 41.91 2.27
4732 4802 1.464997 CTGCTTAAGACGGGAAGTTGC 59.535 52.381 6.67 0.00 0.00 4.17
4734 4804 1.975680 TCCTGCTTAAGACGGGAAGTT 59.024 47.619 19.20 0.00 39.68 2.66
4742 4812 6.150396 TCATAGCTACTTCCTGCTTAAGAC 57.850 41.667 6.67 0.00 40.35 3.01
4751 4821 2.074729 ACCGCTCATAGCTACTTCCT 57.925 50.000 0.00 0.00 39.60 3.36
4753 4823 1.861575 GCAACCGCTCATAGCTACTTC 59.138 52.381 0.00 0.00 39.60 3.01
4796 4866 8.873144 TCTTTTGAAGGGAAATCAATTGAGAAT 58.127 29.630 14.54 2.24 36.72 2.40
4802 4872 8.670521 ACCTATCTTTTGAAGGGAAATCAATT 57.329 30.769 0.00 0.00 36.72 2.32
4841 4911 6.492429 GGGTGTTAGATCCATTTTATAACCCC 59.508 42.308 0.00 0.34 37.05 4.95
4842 4912 7.230712 CAGGGTGTTAGATCCATTTTATAACCC 59.769 40.741 0.00 0.00 42.22 4.11
4845 4915 9.793259 GATCAGGGTGTTAGATCCATTTTATAA 57.207 33.333 0.00 0.00 33.70 0.98
4847 4917 7.815383 TGATCAGGGTGTTAGATCCATTTTAT 58.185 34.615 0.00 0.00 37.86 1.40
4860 4930 4.447138 TTAGTTGGTTGATCAGGGTGTT 57.553 40.909 0.00 0.00 0.00 3.32
4873 4943 6.612863 AGGTCGGGTACTATTAATTAGTTGGT 59.387 38.462 0.00 0.00 41.49 3.67
4901 4971 9.790344 TTTCATCAACCATTATTTTTGACCAAT 57.210 25.926 0.00 0.00 32.21 3.16
4941 5013 5.977129 CGGTCCATGCCTCATAAAATAAAAC 59.023 40.000 0.00 0.00 0.00 2.43
4942 5014 5.888724 TCGGTCCATGCCTCATAAAATAAAA 59.111 36.000 0.00 0.00 0.00 1.52
4946 5018 3.576078 TCGGTCCATGCCTCATAAAAT 57.424 42.857 0.00 0.00 0.00 1.82
5014 5087 5.515534 GCCCACTTTGGTCATCCTATCATAT 60.516 44.000 0.00 0.00 35.17 1.78
5037 5110 1.406887 CCATAGTACACCCACCAGTGC 60.407 57.143 0.00 0.00 41.67 4.40
5373 5446 8.642020 GTTCAAAGTACACCTTAGTATTACACG 58.358 37.037 0.00 0.00 31.48 4.49
5585 5661 2.009774 GTGTGCGTGATAGATGCCTTT 58.990 47.619 0.00 0.00 35.48 3.11
5591 5667 5.537300 AATTCCTAGTGTGCGTGATAGAT 57.463 39.130 0.00 0.00 0.00 1.98
5599 5676 7.477144 TCAATGTTATAATTCCTAGTGTGCG 57.523 36.000 0.00 0.00 0.00 5.34
5616 5693 6.981762 TTTGCACTCAATTTGTTCAATGTT 57.018 29.167 0.00 0.00 31.33 2.71
5649 5727 6.380995 CAAAATCTTCATGTCAAATCGGTGA 58.619 36.000 0.00 0.00 0.00 4.02
5650 5728 5.061311 GCAAAATCTTCATGTCAAATCGGTG 59.939 40.000 0.00 0.00 0.00 4.94
5662 5740 6.213677 CCAATCATCATCGCAAAATCTTCAT 58.786 36.000 0.00 0.00 0.00 2.57
5669 5747 3.429272 GCTTCCCAATCATCATCGCAAAA 60.429 43.478 0.00 0.00 0.00 2.44
5670 5748 2.099592 GCTTCCCAATCATCATCGCAAA 59.900 45.455 0.00 0.00 0.00 3.68
5672 5750 1.311859 GCTTCCCAATCATCATCGCA 58.688 50.000 0.00 0.00 0.00 5.10
5677 5755 2.291735 ACATGTGGCTTCCCAATCATCA 60.292 45.455 0.00 0.00 44.33 3.07
5707 5785 6.779860 ACCCATGGTATTGTATACATCCTTC 58.220 40.000 11.73 0.00 32.11 3.46
5724 5802 2.485479 CCCTCTCGATAACAACCCATGG 60.485 54.545 4.14 4.14 0.00 3.66
5736 5814 0.397816 CCTTGGTCCTCCCTCTCGAT 60.398 60.000 0.00 0.00 0.00 3.59
5738 5816 2.060980 CCCTTGGTCCTCCCTCTCG 61.061 68.421 0.00 0.00 0.00 4.04
5739 5817 0.978667 GACCCTTGGTCCTCCCTCTC 60.979 65.000 1.68 0.00 46.19 3.20
5740 5818 1.081277 GACCCTTGGTCCTCCCTCT 59.919 63.158 1.68 0.00 46.19 3.69
5741 5819 3.728772 GACCCTTGGTCCTCCCTC 58.271 66.667 1.68 0.00 46.19 4.30
5758 5839 1.980844 ACGCGTGACATAAACACTACG 59.019 47.619 12.93 0.00 39.48 3.51
5762 5843 4.325204 TGAGAATACGCGTGACATAAACAC 59.675 41.667 24.59 3.53 35.26 3.32
5775 5856 4.490479 GCTAAACAACGACTGAGAATACGC 60.490 45.833 0.00 0.00 0.00 4.42
5784 5865 3.026630 TCAGAGGCTAAACAACGACTG 57.973 47.619 0.00 0.00 0.00 3.51
5812 5893 1.398390 GGACAACGCCTCAACATGATC 59.602 52.381 0.00 0.00 0.00 2.92
5833 5914 5.299531 TCAAGTATCTAATGGTCAGAGGACG 59.700 44.000 0.00 0.00 45.28 4.79
5835 5916 7.147655 CCTTTCAAGTATCTAATGGTCAGAGGA 60.148 40.741 0.00 0.00 0.00 3.71
5839 5920 6.037610 GCACCTTTCAAGTATCTAATGGTCAG 59.962 42.308 0.00 0.00 30.60 3.51
5847 5928 6.921857 GCGTATAAGCACCTTTCAAGTATCTA 59.078 38.462 5.73 0.00 37.05 1.98
5873 5954 2.125350 GCCAGCTTCGTCCTCCTG 60.125 66.667 0.00 0.00 0.00 3.86
5888 5969 1.021968 GTCATGATTTACCACCCGCC 58.978 55.000 0.00 0.00 0.00 6.13
5890 5971 0.655733 GCGTCATGATTTACCACCCG 59.344 55.000 0.00 0.00 0.00 5.28
5891 5972 0.655733 CGCGTCATGATTTACCACCC 59.344 55.000 0.00 0.00 0.00 4.61
5901 5982 1.556591 GCACACAAGTCGCGTCATGA 61.557 55.000 14.99 0.00 0.00 3.07
5910 5991 0.163788 CGTCAATCGGCACACAAGTC 59.836 55.000 0.00 0.00 35.71 3.01
5920 6001 0.036765 TGGGGTTCTTCGTCAATCGG 60.037 55.000 0.00 0.00 40.32 4.18
5928 6009 0.613260 TGGACTCATGGGGTTCTTCG 59.387 55.000 0.00 0.00 0.00 3.79
5951 6032 6.128227 TGTTTCCCAACATTATACACGCTTAC 60.128 38.462 0.00 0.00 38.03 2.34
5991 6072 1.445871 GGTGATCGTAGGGCGTTTTT 58.554 50.000 0.00 0.00 42.13 1.94
5995 6076 2.363276 TGGGTGATCGTAGGGCGT 60.363 61.111 0.00 0.00 42.13 5.68
6030 6116 6.866010 TGATCTGATCCAAACCATTTATCG 57.134 37.500 14.71 0.00 0.00 2.92
6080 6166 3.280295 ACGATCTACACCGACTCATCTT 58.720 45.455 0.00 0.00 0.00 2.40
6085 6171 3.620374 TCAAGTACGATCTACACCGACTC 59.380 47.826 0.00 0.00 0.00 3.36
6090 6176 4.439837 GGGACTTCAAGTACGATCTACACC 60.440 50.000 0.00 0.00 26.61 4.16
6107 6193 5.008811 CGTTCATCTATAGTTCGAGGGACTT 59.991 44.000 0.00 0.00 41.55 3.01
6110 6196 4.711399 TCGTTCATCTATAGTTCGAGGGA 58.289 43.478 0.00 0.00 0.00 4.20
6120 6206 4.319984 CGTTCGTGGGATCGTTCATCTATA 60.320 45.833 0.00 0.00 32.18 1.31
6121 6207 3.550233 CGTTCGTGGGATCGTTCATCTAT 60.550 47.826 0.00 0.00 32.18 1.98
6127 6213 2.450345 GCCGTTCGTGGGATCGTTC 61.450 63.158 0.00 0.00 34.38 3.95
6139 6225 1.563173 GACTGTTCGTGTGCCGTTC 59.437 57.895 0.00 0.00 37.94 3.95
6143 6229 1.668151 GAGGGACTGTTCGTGTGCC 60.668 63.158 0.00 0.00 41.55 5.01
6146 6232 0.031721 GTTCGAGGGACTGTTCGTGT 59.968 55.000 0.92 0.00 41.55 4.49
6149 6235 1.443872 CCGTTCGAGGGACTGTTCG 60.444 63.158 0.00 0.00 41.55 3.95
6150 6236 4.573162 CCGTTCGAGGGACTGTTC 57.427 61.111 0.00 0.00 41.55 3.18
6185 6271 4.090642 CGTAAGCTTGCAACTTGTAGAGAG 59.909 45.833 15.13 0.00 0.00 3.20
6193 6279 2.256117 AGACCGTAAGCTTGCAACTT 57.744 45.000 15.13 15.40 0.00 2.66
6204 6290 1.202290 GCCGGATCGTTAAGACCGTAA 60.202 52.381 5.05 0.00 39.90 3.18
6208 6294 1.590792 CCGCCGGATCGTTAAGACC 60.591 63.158 5.05 0.00 0.00 3.85
6225 6311 2.548295 TTTTGGACGGTGAAGCGCC 61.548 57.895 2.29 5.27 0.00 6.53
6235 6321 1.334329 GGCAACGGTTAGTTTTGGACG 60.334 52.381 0.00 0.00 42.02 4.79
6253 6339 3.385111 TCTTCCCTCTCTAATTCTTCGGC 59.615 47.826 0.00 0.00 0.00 5.54
6255 6341 8.172352 TCTAATCTTCCCTCTCTAATTCTTCG 57.828 38.462 0.00 0.00 0.00 3.79
6256 6342 9.758651 GTTCTAATCTTCCCTCTCTAATTCTTC 57.241 37.037 0.00 0.00 0.00 2.87
6257 6343 8.710239 GGTTCTAATCTTCCCTCTCTAATTCTT 58.290 37.037 0.00 0.00 0.00 2.52
6268 6354 6.674419 AGTCTAATGTGGTTCTAATCTTCCCT 59.326 38.462 0.00 0.00 0.00 4.20
6269 6355 6.890293 AGTCTAATGTGGTTCTAATCTTCCC 58.110 40.000 0.00 0.00 0.00 3.97
6270 6356 8.261522 AGAAGTCTAATGTGGTTCTAATCTTCC 58.738 37.037 0.00 0.00 0.00 3.46
6321 6407 8.802267 GTCCTAGTTGATCAATTAGAGCTAGAT 58.198 37.037 29.65 0.00 33.91 1.98
6347 6433 8.266473 TCTAGTCCTAGTTCTAGTTCTACTTGG 58.734 40.741 14.13 0.00 36.52 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.