Multiple sequence alignment - TraesCS2A01G126800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G126800 chr2A 100.000 5702 0 0 1 5702 74872928 74878629 0.000000e+00 10530.0
1 TraesCS2A01G126800 chr2A 95.385 130 6 0 224 353 74842917 74843046 2.080000e-49 207.0
2 TraesCS2A01G126800 chr2A 93.694 111 7 0 422 532 74843052 74843162 3.530000e-37 167.0
3 TraesCS2A01G126800 chr2A 89.412 85 9 0 4770 4854 74877654 74877738 2.170000e-19 108.0
4 TraesCS2A01G126800 chr2A 89.412 85 9 0 4727 4811 74877697 74877781 2.170000e-19 108.0
5 TraesCS2A01G126800 chr2A 81.429 140 17 4 5238 5368 676733525 676733664 7.810000e-19 106.0
6 TraesCS2A01G126800 chr2B 92.154 1797 83 15 2072 3851 114761236 114762991 0.000000e+00 2484.0
7 TraesCS2A01G126800 chr2B 93.456 978 53 6 4186 5162 114762997 114763964 0.000000e+00 1441.0
8 TraesCS2A01G126800 chr2B 91.801 866 45 16 1178 2027 114760376 114761231 0.000000e+00 1182.0
9 TraesCS2A01G126800 chr2B 94.386 766 28 5 224 984 114759056 114759811 0.000000e+00 1162.0
10 TraesCS2A01G126800 chr2B 78.000 200 33 5 5411 5604 725732209 725732403 1.300000e-21 115.0
11 TraesCS2A01G126800 chr2B 89.412 85 9 0 4770 4854 114763529 114763613 2.170000e-19 108.0
12 TraesCS2A01G126800 chr2B 91.892 74 4 2 1096 1168 114760232 114760304 1.010000e-17 102.0
13 TraesCS2A01G126800 chr2D 92.281 1749 87 14 2470 4200 75094835 75096553 0.000000e+00 2438.0
14 TraesCS2A01G126800 chr2D 90.704 1065 67 22 4233 5285 75096551 75097595 0.000000e+00 1389.0
15 TraesCS2A01G126800 chr2D 94.142 734 19 10 443 1168 75092632 75093349 0.000000e+00 1096.0
16 TraesCS2A01G126800 chr2D 89.521 668 33 21 1178 1810 75093404 75094069 0.000000e+00 811.0
17 TraesCS2A01G126800 chr2D 79.866 149 17 7 5223 5364 590935952 590936094 4.700000e-16 97.1
18 TraesCS2A01G126800 chr6A 97.487 199 3 2 1 197 147954259 147954457 7.080000e-89 339.0
19 TraesCS2A01G126800 chr6A 97.409 193 3 2 6 197 102993507 102993698 1.530000e-85 327.0
20 TraesCS2A01G126800 chr6A 94.558 147 8 0 1 147 239124548 239124694 1.600000e-55 228.0
21 TraesCS2A01G126800 chr6A 76.238 202 37 6 5411 5605 448649717 448649520 4.700000e-16 97.1
22 TraesCS2A01G126800 chr6A 96.875 32 0 1 194 224 239124832 239124863 1.000000e-02 52.8
23 TraesCS2A01G126800 chr7A 96.970 198 5 1 1 197 139443637 139443834 1.180000e-86 331.0
24 TraesCS2A01G126800 chr7A 96.970 198 5 1 1 197 701399783 701399980 1.180000e-86 331.0
25 TraesCS2A01G126800 chr7A 90.355 197 18 1 1 197 127894135 127893940 2.040000e-64 257.0
26 TraesCS2A01G126800 chr7A 83.085 201 24 5 5411 5604 500793565 500793762 2.110000e-39 174.0
27 TraesCS2A01G126800 chr7A 96.970 33 0 1 194 225 139443956 139443988 3.000000e-03 54.7
28 TraesCS2A01G126800 chr7A 96.875 32 0 1 194 224 701400102 701400133 1.000000e-02 52.8
29 TraesCS2A01G126800 chr5A 95.431 197 7 2 1 197 383827879 383828073 4.290000e-81 313.0
30 TraesCS2A01G126800 chr5A 91.919 198 14 2 1 197 356775705 356775901 5.630000e-70 276.0
31 TraesCS2A01G126800 chr5A 89.950 199 16 3 1 196 314741298 314741495 2.640000e-63 254.0
32 TraesCS2A01G126800 chr7D 84.227 317 46 2 4406 4720 322262486 322262172 7.180000e-79 305.0
33 TraesCS2A01G126800 chr7D 82.870 216 24 8 5411 5619 511327771 511327562 1.260000e-41 182.0
34 TraesCS2A01G126800 chr7D 79.397 199 32 5 5411 5604 213792579 213792773 1.290000e-26 132.0
35 TraesCS2A01G126800 chr7B 84.649 228 30 5 4400 4622 715812686 715812913 7.440000e-54 222.0
36 TraesCS2A01G126800 chr7B 78.440 218 33 8 5411 5620 245853117 245853328 4.640000e-26 130.0
37 TraesCS2A01G126800 chr7B 80.392 153 20 7 5219 5364 715656368 715656517 2.170000e-19 108.0
38 TraesCS2A01G126800 chr3D 80.399 301 42 13 4297 4591 15470699 15470988 4.480000e-51 213.0
39 TraesCS2A01G126800 chr3D 82.383 193 23 4 5411 5596 162529826 162529638 2.130000e-34 158.0
40 TraesCS2A01G126800 chr6D 79.402 301 46 12 4297 4591 46461409 46461119 1.250000e-46 198.0
41 TraesCS2A01G126800 chr6D 79.402 301 46 12 4297 4591 347710648 347710938 1.250000e-46 198.0
42 TraesCS2A01G126800 chr5B 78.846 312 50 11 4320 4625 641162307 641162006 4.510000e-46 196.0
43 TraesCS2A01G126800 chr5B 90.000 150 7 5 1536 1677 574963978 574964127 2.710000e-43 187.0
44 TraesCS2A01G126800 chr4A 80.973 226 36 4 4406 4626 651734372 651734149 7.600000e-39 172.0
45 TraesCS2A01G126800 chr1B 78.500 200 32 5 5411 5604 416580343 416580537 2.790000e-23 121.0
46 TraesCS2A01G126800 chr6B 88.158 76 7 2 5247 5320 654506155 654506080 7.870000e-14 89.8
47 TraesCS2A01G126800 chr5D 78.182 110 16 4 5222 5331 447689206 447689105 4.770000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G126800 chr2A 74872928 74878629 5701 False 3582.000000 10530 92.941333 1 5702 3 chr2A.!!$F3 5701
1 TraesCS2A01G126800 chr2B 114759056 114763964 4908 False 1079.833333 2484 92.183500 224 5162 6 chr2B.!!$F2 4938
2 TraesCS2A01G126800 chr2D 75092632 75097595 4963 False 1433.500000 2438 91.662000 443 5285 4 chr2D.!!$F2 4842

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.032615 AGTAGGTGAGAGGGAGCAGG 60.033 60.000 0.00 0.00 0.00 4.85 F
172 173 0.182299 GAGGAAGGGGATGAGCTTGG 59.818 60.000 0.00 0.00 0.00 3.61 F
174 175 0.182299 GGAAGGGGATGAGCTTGGAG 59.818 60.000 0.00 0.00 0.00 3.86 F
179 180 0.182299 GGGATGAGCTTGGAGAAGGG 59.818 60.000 0.00 0.00 0.00 3.95 F
180 181 0.182299 GGATGAGCTTGGAGAAGGGG 59.818 60.000 0.00 0.00 0.00 4.79 F
1300 1698 0.309612 GTACACGCCTTGGTTGGTTG 59.690 55.000 0.00 0.00 0.00 3.77 F
1584 1986 1.734465 CTCGTCATCAAACCCTCTTGC 59.266 52.381 0.00 0.00 0.00 4.01 F
2204 2661 1.879575 TTTGAGGAGATCACCGGGAT 58.120 50.000 6.32 5.67 37.77 3.85 F
3461 4163 1.134280 ACATCAGCATGGTCACCTAGC 60.134 52.381 0.00 0.00 36.16 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1871 2321 0.390472 CCCAGAGGAGTCGAAAGCAC 60.390 60.000 0.00 0.0 33.47 4.40 R
2171 2627 1.133025 CCTCAAATAAACTGCCTGCCG 59.867 52.381 0.00 0.0 0.00 5.69 R
2268 2728 6.663093 AGGCATAGAATATTTGTGTGGTTCAA 59.337 34.615 0.00 0.0 0.00 2.69 R
2270 2730 6.699575 AGGCATAGAATATTTGTGTGGTTC 57.300 37.500 0.00 0.0 0.00 3.62 R
2304 2992 4.798924 GCAAATGTGTTGTTAATGGCCAGA 60.799 41.667 13.05 0.0 0.00 3.86 R
2877 3579 0.034896 GAGTGGACATGGTGGTCGTT 59.965 55.000 0.00 0.0 38.70 3.85 R
3439 4141 0.254178 AGGTGACCATGCTGATGTCC 59.746 55.000 3.63 0.0 0.00 4.02 R
4010 4729 0.251787 ATCCAACCTTTGTCTGCCCC 60.252 55.000 0.00 0.0 0.00 5.80 R
4722 5468 1.176527 ACTGATGAACAATTGGGGCG 58.823 50.000 10.83 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.792047 CACTGTGCGCGGTGGATG 61.792 66.667 28.04 5.70 45.71 3.51
19 20 4.314440 ACTGTGCGCGGTGGATGT 62.314 61.111 11.81 0.00 31.98 3.06
20 21 3.049674 CTGTGCGCGGTGGATGTT 61.050 61.111 8.83 0.00 0.00 2.71
21 22 1.739929 CTGTGCGCGGTGGATGTTA 60.740 57.895 8.83 0.00 0.00 2.41
22 23 1.966493 CTGTGCGCGGTGGATGTTAC 61.966 60.000 8.83 0.00 0.00 2.50
23 24 2.435234 TGCGCGGTGGATGTTACC 60.435 61.111 8.83 0.00 34.81 2.85
32 33 1.874129 TGGATGTTACCGATCCACCT 58.126 50.000 0.89 0.00 43.71 4.00
33 34 1.760613 TGGATGTTACCGATCCACCTC 59.239 52.381 0.89 0.00 43.71 3.85
34 35 1.070289 GGATGTTACCGATCCACCTCC 59.930 57.143 0.00 0.00 39.49 4.30
35 36 1.070289 GATGTTACCGATCCACCTCCC 59.930 57.143 0.00 0.00 0.00 4.30
36 37 0.252330 TGTTACCGATCCACCTCCCA 60.252 55.000 0.00 0.00 0.00 4.37
37 38 0.906775 GTTACCGATCCACCTCCCAA 59.093 55.000 0.00 0.00 0.00 4.12
38 39 1.134491 GTTACCGATCCACCTCCCAAG 60.134 57.143 0.00 0.00 0.00 3.61
39 40 1.335132 TACCGATCCACCTCCCAAGC 61.335 60.000 0.00 0.00 0.00 4.01
40 41 2.370445 CCGATCCACCTCCCAAGCT 61.370 63.158 0.00 0.00 0.00 3.74
41 42 1.604378 CGATCCACCTCCCAAGCTT 59.396 57.895 0.00 0.00 0.00 3.74
42 43 0.462759 CGATCCACCTCCCAAGCTTC 60.463 60.000 0.00 0.00 0.00 3.86
43 44 0.620556 GATCCACCTCCCAAGCTTCA 59.379 55.000 0.00 0.00 0.00 3.02
44 45 0.622665 ATCCACCTCCCAAGCTTCAG 59.377 55.000 0.00 0.00 0.00 3.02
45 46 0.473694 TCCACCTCCCAAGCTTCAGA 60.474 55.000 0.00 0.00 0.00 3.27
46 47 0.401738 CCACCTCCCAAGCTTCAGAA 59.598 55.000 0.00 0.00 0.00 3.02
47 48 1.612726 CCACCTCCCAAGCTTCAGAAG 60.613 57.143 5.72 5.72 0.00 2.85
48 49 0.695347 ACCTCCCAAGCTTCAGAAGG 59.305 55.000 12.30 4.05 0.00 3.46
49 50 0.695347 CCTCCCAAGCTTCAGAAGGT 59.305 55.000 9.18 9.18 41.85 3.50
50 51 1.612726 CCTCCCAAGCTTCAGAAGGTG 60.613 57.143 15.65 9.60 39.57 4.00
51 52 0.250901 TCCCAAGCTTCAGAAGGTGC 60.251 55.000 15.65 0.00 39.57 5.01
52 53 0.538057 CCCAAGCTTCAGAAGGTGCA 60.538 55.000 15.65 0.00 39.57 4.57
53 54 0.879765 CCAAGCTTCAGAAGGTGCAG 59.120 55.000 15.65 8.78 39.57 4.41
54 55 0.240411 CAAGCTTCAGAAGGTGCAGC 59.760 55.000 15.65 8.11 45.05 5.25
55 56 2.866028 GCTTCAGAAGGTGCAGCG 59.134 61.111 10.78 0.00 35.63 5.18
56 57 2.684843 GCTTCAGAAGGTGCAGCGG 61.685 63.158 10.78 1.96 35.63 5.52
57 58 2.669569 TTCAGAAGGTGCAGCGGC 60.670 61.111 10.78 0.31 41.68 6.53
72 73 4.815108 GGCGGCGAGGGGGAAATT 62.815 66.667 12.98 0.00 0.00 1.82
73 74 2.754254 GCGGCGAGGGGGAAATTT 60.754 61.111 12.98 0.00 0.00 1.82
74 75 2.348104 GCGGCGAGGGGGAAATTTT 61.348 57.895 12.98 0.00 0.00 1.82
75 76 1.884075 GCGGCGAGGGGGAAATTTTT 61.884 55.000 12.98 0.00 0.00 1.94
98 99 7.531857 TTTTTGGCTCTGAATACCAATGTAA 57.468 32.000 7.14 0.00 42.77 2.41
99 100 6.509418 TTTGGCTCTGAATACCAATGTAAC 57.491 37.500 7.14 0.00 42.77 2.50
100 101 4.188462 TGGCTCTGAATACCAATGTAACG 58.812 43.478 0.00 0.00 0.00 3.18
101 102 3.002348 GGCTCTGAATACCAATGTAACGC 59.998 47.826 0.00 0.00 0.00 4.84
102 103 3.002348 GCTCTGAATACCAATGTAACGCC 59.998 47.826 0.00 0.00 0.00 5.68
103 104 3.537580 TCTGAATACCAATGTAACGCCC 58.462 45.455 0.00 0.00 0.00 6.13
104 105 2.616842 CTGAATACCAATGTAACGCCCC 59.383 50.000 0.00 0.00 0.00 5.80
105 106 2.240160 TGAATACCAATGTAACGCCCCT 59.760 45.455 0.00 0.00 0.00 4.79
106 107 2.341846 ATACCAATGTAACGCCCCTG 57.658 50.000 0.00 0.00 0.00 4.45
107 108 1.277579 TACCAATGTAACGCCCCTGA 58.722 50.000 0.00 0.00 0.00 3.86
108 109 0.623723 ACCAATGTAACGCCCCTGAT 59.376 50.000 0.00 0.00 0.00 2.90
109 110 1.308998 CCAATGTAACGCCCCTGATC 58.691 55.000 0.00 0.00 0.00 2.92
110 111 0.937304 CAATGTAACGCCCCTGATCG 59.063 55.000 0.00 0.00 0.00 3.69
111 112 0.179056 AATGTAACGCCCCTGATCGG 60.179 55.000 0.00 0.00 0.00 4.18
120 121 2.205462 CCTGATCGGGGAGGGGAT 59.795 66.667 13.34 0.00 0.00 3.85
121 122 1.915769 CCTGATCGGGGAGGGGATC 60.916 68.421 13.34 0.00 39.56 3.36
122 123 2.203640 TGATCGGGGAGGGGATCG 60.204 66.667 0.00 0.00 41.50 3.69
123 124 2.997897 GATCGGGGAGGGGATCGG 60.998 72.222 0.00 0.00 30.76 4.18
128 129 3.696676 GGGAGGGGATCGGCGATC 61.697 72.222 35.35 35.35 38.25 3.69
129 130 2.601966 GGAGGGGATCGGCGATCT 60.602 66.667 38.98 25.66 38.91 2.75
130 131 1.304217 GGAGGGGATCGGCGATCTA 60.304 63.158 38.98 9.26 38.91 1.98
131 132 1.316706 GGAGGGGATCGGCGATCTAG 61.317 65.000 38.98 0.00 38.91 2.43
132 133 0.322636 GAGGGGATCGGCGATCTAGA 60.323 60.000 38.98 8.06 38.91 2.43
133 134 0.322997 AGGGGATCGGCGATCTAGAG 60.323 60.000 38.98 0.00 38.91 2.43
134 135 0.609681 GGGGATCGGCGATCTAGAGT 60.610 60.000 38.98 13.15 38.91 3.24
135 136 1.339824 GGGGATCGGCGATCTAGAGTA 60.340 57.143 38.98 5.70 38.91 2.59
136 137 2.011222 GGGATCGGCGATCTAGAGTAG 58.989 57.143 38.98 0.00 38.91 2.57
137 138 2.011222 GGATCGGCGATCTAGAGTAGG 58.989 57.143 38.98 0.00 38.91 3.18
138 139 2.616001 GGATCGGCGATCTAGAGTAGGT 60.616 54.545 38.98 10.31 38.91 3.08
139 140 1.880271 TCGGCGATCTAGAGTAGGTG 58.120 55.000 4.99 0.00 0.00 4.00
140 141 1.415289 TCGGCGATCTAGAGTAGGTGA 59.585 52.381 4.99 0.00 0.00 4.02
141 142 1.801771 CGGCGATCTAGAGTAGGTGAG 59.198 57.143 0.00 0.00 0.00 3.51
142 143 2.548280 CGGCGATCTAGAGTAGGTGAGA 60.548 54.545 0.00 0.00 0.00 3.27
143 144 3.071479 GGCGATCTAGAGTAGGTGAGAG 58.929 54.545 0.00 0.00 0.00 3.20
144 145 3.071479 GCGATCTAGAGTAGGTGAGAGG 58.929 54.545 0.00 0.00 0.00 3.69
145 146 3.670625 CGATCTAGAGTAGGTGAGAGGG 58.329 54.545 0.00 0.00 0.00 4.30
146 147 3.325425 CGATCTAGAGTAGGTGAGAGGGA 59.675 52.174 0.00 0.00 0.00 4.20
147 148 4.562757 CGATCTAGAGTAGGTGAGAGGGAG 60.563 54.167 0.00 0.00 0.00 4.30
148 149 2.440253 TCTAGAGTAGGTGAGAGGGAGC 59.560 54.545 0.00 0.00 0.00 4.70
149 150 1.003646 AGAGTAGGTGAGAGGGAGCA 58.996 55.000 0.00 0.00 0.00 4.26
150 151 1.064017 AGAGTAGGTGAGAGGGAGCAG 60.064 57.143 0.00 0.00 0.00 4.24
151 152 0.032615 AGTAGGTGAGAGGGAGCAGG 60.033 60.000 0.00 0.00 0.00 4.85
152 153 0.324830 GTAGGTGAGAGGGAGCAGGT 60.325 60.000 0.00 0.00 0.00 4.00
153 154 0.324738 TAGGTGAGAGGGAGCAGGTG 60.325 60.000 0.00 0.00 0.00 4.00
154 155 1.610673 GGTGAGAGGGAGCAGGTGA 60.611 63.158 0.00 0.00 0.00 4.02
155 156 1.612395 GGTGAGAGGGAGCAGGTGAG 61.612 65.000 0.00 0.00 0.00 3.51
156 157 1.305633 TGAGAGGGAGCAGGTGAGG 60.306 63.158 0.00 0.00 0.00 3.86
157 158 1.000993 GAGAGGGAGCAGGTGAGGA 59.999 63.158 0.00 0.00 0.00 3.71
158 159 0.616111 GAGAGGGAGCAGGTGAGGAA 60.616 60.000 0.00 0.00 0.00 3.36
159 160 0.617249 AGAGGGAGCAGGTGAGGAAG 60.617 60.000 0.00 0.00 0.00 3.46
160 161 1.614824 AGGGAGCAGGTGAGGAAGG 60.615 63.158 0.00 0.00 0.00 3.46
161 162 2.674220 GGGAGCAGGTGAGGAAGGG 61.674 68.421 0.00 0.00 0.00 3.95
162 163 2.674220 GGAGCAGGTGAGGAAGGGG 61.674 68.421 0.00 0.00 0.00 4.79
163 164 1.613630 GAGCAGGTGAGGAAGGGGA 60.614 63.158 0.00 0.00 0.00 4.81
164 165 0.985490 GAGCAGGTGAGGAAGGGGAT 60.985 60.000 0.00 0.00 0.00 3.85
165 166 1.225704 GCAGGTGAGGAAGGGGATG 59.774 63.158 0.00 0.00 0.00 3.51
166 167 1.274703 GCAGGTGAGGAAGGGGATGA 61.275 60.000 0.00 0.00 0.00 2.92
167 168 0.835941 CAGGTGAGGAAGGGGATGAG 59.164 60.000 0.00 0.00 0.00 2.90
168 169 0.985490 AGGTGAGGAAGGGGATGAGC 60.985 60.000 0.00 0.00 0.00 4.26
169 170 0.985490 GGTGAGGAAGGGGATGAGCT 60.985 60.000 0.00 0.00 0.00 4.09
170 171 0.915364 GTGAGGAAGGGGATGAGCTT 59.085 55.000 0.00 0.00 0.00 3.74
171 172 0.914644 TGAGGAAGGGGATGAGCTTG 59.085 55.000 0.00 0.00 0.00 4.01
172 173 0.182299 GAGGAAGGGGATGAGCTTGG 59.818 60.000 0.00 0.00 0.00 3.61
173 174 0.253347 AGGAAGGGGATGAGCTTGGA 60.253 55.000 0.00 0.00 0.00 3.53
174 175 0.182299 GGAAGGGGATGAGCTTGGAG 59.818 60.000 0.00 0.00 0.00 3.86
175 176 1.207791 GAAGGGGATGAGCTTGGAGA 58.792 55.000 0.00 0.00 0.00 3.71
176 177 1.561542 GAAGGGGATGAGCTTGGAGAA 59.438 52.381 0.00 0.00 0.00 2.87
177 178 1.211456 AGGGGATGAGCTTGGAGAAG 58.789 55.000 0.00 0.00 0.00 2.85
178 179 0.182299 GGGGATGAGCTTGGAGAAGG 59.818 60.000 0.00 0.00 0.00 3.46
179 180 0.182299 GGGATGAGCTTGGAGAAGGG 59.818 60.000 0.00 0.00 0.00 3.95
180 181 0.182299 GGATGAGCTTGGAGAAGGGG 59.818 60.000 0.00 0.00 0.00 4.79
181 182 0.915364 GATGAGCTTGGAGAAGGGGT 59.085 55.000 0.00 0.00 0.00 4.95
182 183 1.283321 GATGAGCTTGGAGAAGGGGTT 59.717 52.381 0.00 0.00 0.00 4.11
183 184 2.038863 TGAGCTTGGAGAAGGGGTTA 57.961 50.000 0.00 0.00 0.00 2.85
184 185 1.909302 TGAGCTTGGAGAAGGGGTTAG 59.091 52.381 0.00 0.00 0.00 2.34
185 186 1.210722 GAGCTTGGAGAAGGGGTTAGG 59.789 57.143 0.00 0.00 0.00 2.69
186 187 1.203440 AGCTTGGAGAAGGGGTTAGGA 60.203 52.381 0.00 0.00 0.00 2.94
187 188 1.847088 GCTTGGAGAAGGGGTTAGGAT 59.153 52.381 0.00 0.00 0.00 3.24
188 189 2.242452 GCTTGGAGAAGGGGTTAGGATT 59.758 50.000 0.00 0.00 0.00 3.01
189 190 3.891049 CTTGGAGAAGGGGTTAGGATTG 58.109 50.000 0.00 0.00 0.00 2.67
190 191 2.929301 TGGAGAAGGGGTTAGGATTGT 58.071 47.619 0.00 0.00 0.00 2.71
191 192 4.083080 TGGAGAAGGGGTTAGGATTGTA 57.917 45.455 0.00 0.00 0.00 2.41
192 193 4.037927 TGGAGAAGGGGTTAGGATTGTAG 58.962 47.826 0.00 0.00 0.00 2.74
193 194 4.265124 TGGAGAAGGGGTTAGGATTGTAGA 60.265 45.833 0.00 0.00 0.00 2.59
194 195 4.345547 GGAGAAGGGGTTAGGATTGTAGAG 59.654 50.000 0.00 0.00 0.00 2.43
195 196 4.299485 AGAAGGGGTTAGGATTGTAGAGG 58.701 47.826 0.00 0.00 0.00 3.69
196 197 4.015541 AGAAGGGGTTAGGATTGTAGAGGA 60.016 45.833 0.00 0.00 0.00 3.71
197 198 3.655384 AGGGGTTAGGATTGTAGAGGAC 58.345 50.000 0.00 0.00 0.00 3.85
198 199 3.013648 AGGGGTTAGGATTGTAGAGGACA 59.986 47.826 0.00 0.00 35.78 4.02
199 200 3.134262 GGGGTTAGGATTGTAGAGGACAC 59.866 52.174 0.00 0.00 37.96 3.67
200 201 4.031611 GGGTTAGGATTGTAGAGGACACT 58.968 47.826 0.00 0.00 37.96 3.55
201 202 5.206587 GGGTTAGGATTGTAGAGGACACTA 58.793 45.833 0.00 0.00 37.96 2.74
202 203 5.659971 GGGTTAGGATTGTAGAGGACACTAA 59.340 44.000 0.00 0.00 37.96 2.24
203 204 6.326843 GGGTTAGGATTGTAGAGGACACTAAT 59.673 42.308 0.00 0.00 37.96 1.73
204 205 7.435305 GGTTAGGATTGTAGAGGACACTAATC 58.565 42.308 0.00 0.00 37.96 1.75
205 206 7.069578 GGTTAGGATTGTAGAGGACACTAATCA 59.930 40.741 0.00 0.00 37.96 2.57
206 207 6.723298 AGGATTGTAGAGGACACTAATCAG 57.277 41.667 0.00 0.00 37.96 2.90
207 208 5.069781 AGGATTGTAGAGGACACTAATCAGC 59.930 44.000 0.00 0.00 37.96 4.26
208 209 5.069781 GGATTGTAGAGGACACTAATCAGCT 59.930 44.000 0.00 0.00 37.96 4.24
209 210 4.991153 TGTAGAGGACACTAATCAGCTG 57.009 45.455 7.63 7.63 31.20 4.24
210 211 4.600062 TGTAGAGGACACTAATCAGCTGA 58.400 43.478 20.79 20.79 31.20 4.26
211 212 5.204292 TGTAGAGGACACTAATCAGCTGAT 58.796 41.667 23.75 23.75 32.02 2.90
212 213 5.658634 TGTAGAGGACACTAATCAGCTGATT 59.341 40.000 36.84 36.84 39.53 2.57
213 214 6.833933 TGTAGAGGACACTAATCAGCTGATTA 59.166 38.462 35.46 35.46 38.25 1.75
285 286 9.753674 TGGAAATGTAGATTGACCTAAAATCTT 57.246 29.630 4.16 0.00 40.65 2.40
294 295 8.046107 AGATTGACCTAAAATCTTCTCTCTTGG 58.954 37.037 0.00 0.00 40.65 3.61
329 335 3.070015 GTCCTGGGGCATCAAATTATTGG 59.930 47.826 0.00 0.00 37.15 3.16
335 341 2.837498 GCATCAAATTATTGGGCCACC 58.163 47.619 5.23 0.00 37.15 4.61
337 343 2.516227 TCAAATTATTGGGCCACCGA 57.484 45.000 5.23 0.00 40.75 4.69
365 371 2.680312 TAAGCACAGCTCATGGACTC 57.320 50.000 0.00 0.00 38.25 3.36
374 380 1.151921 TCATGGACTCCACCCCACA 60.152 57.895 0.00 0.00 35.80 4.17
402 408 5.248380 AGTTAATTTCTGACCCAGCTCTT 57.752 39.130 0.00 0.00 0.00 2.85
1062 1080 2.045926 ATCCAGCACGCCAACTCC 60.046 61.111 0.00 0.00 0.00 3.85
1090 1108 3.322466 CCCGCCCTCTCACACCTT 61.322 66.667 0.00 0.00 0.00 3.50
1103 1439 1.676967 CACCTTCCTTCCTGCTGCC 60.677 63.158 0.00 0.00 0.00 4.85
1112 1448 0.766674 TTCCTGCTGCCCCCGTATAT 60.767 55.000 0.00 0.00 0.00 0.86
1150 1486 1.260544 GGCCTTTCATTTGAGCTGGT 58.739 50.000 0.00 0.00 0.00 4.00
1151 1487 1.067354 GGCCTTTCATTTGAGCTGGTG 60.067 52.381 0.00 0.00 0.00 4.17
1152 1488 1.615392 GCCTTTCATTTGAGCTGGTGT 59.385 47.619 0.00 0.00 0.00 4.16
1154 1490 2.029649 CCTTTCATTTGAGCTGGTGTGG 60.030 50.000 0.00 0.00 0.00 4.17
1155 1491 2.363306 TTCATTTGAGCTGGTGTGGT 57.637 45.000 0.00 0.00 0.00 4.16
1168 1504 1.138459 TGTGGTTGTTGCGCTGTTG 59.862 52.632 9.73 0.00 0.00 3.33
1171 1507 2.412937 GTTGTTGCGCTGTTGCCT 59.587 55.556 9.73 0.00 35.36 4.75
1173 1509 2.413963 TTGTTGCGCTGTTGCCTGT 61.414 52.632 9.73 0.00 35.36 4.00
1174 1510 1.098129 TTGTTGCGCTGTTGCCTGTA 61.098 50.000 9.73 0.00 35.36 2.74
1175 1511 0.888736 TGTTGCGCTGTTGCCTGTAT 60.889 50.000 9.73 0.00 35.36 2.29
1176 1512 1.083489 GTTGCGCTGTTGCCTGTATA 58.917 50.000 9.73 0.00 35.36 1.47
1185 1583 4.675146 GCTGTTGCCTGTATACAAATGTGG 60.675 45.833 7.06 5.43 0.00 4.17
1193 1591 4.771903 TGTATACAAATGTGGTGCGGTAT 58.228 39.130 2.20 0.00 0.00 2.73
1194 1592 5.186942 TGTATACAAATGTGGTGCGGTATT 58.813 37.500 2.20 0.00 0.00 1.89
1287 1685 4.678287 AGATTATTATCGTTGCCGTACACG 59.322 41.667 0.00 0.00 35.85 4.49
1300 1698 0.309612 GTACACGCCTTGGTTGGTTG 59.690 55.000 0.00 0.00 0.00 3.77
1346 1746 5.560722 TGTATCCTTCCAGTTTTGAGTCA 57.439 39.130 0.00 0.00 0.00 3.41
1352 1752 4.763793 CCTTCCAGTTTTGAGTCATGACAT 59.236 41.667 27.02 12.53 0.00 3.06
1584 1986 1.734465 CTCGTCATCAAACCCTCTTGC 59.266 52.381 0.00 0.00 0.00 4.01
1586 1988 2.565391 TCGTCATCAAACCCTCTTGCTA 59.435 45.455 0.00 0.00 0.00 3.49
1593 1995 3.644265 TCAAACCCTCTTGCTAGTGTACA 59.356 43.478 0.00 0.00 0.00 2.90
1642 2044 3.378427 GGTGGTGGCTTCTTCATCATTAC 59.622 47.826 0.00 0.00 0.00 1.89
1677 2085 6.525121 TTCGATATCGTCATGGAAATTGTC 57.475 37.500 23.61 0.00 40.80 3.18
1708 2140 2.536365 TCATTTCGCCAACTAGCTACG 58.464 47.619 0.00 0.00 0.00 3.51
1797 2245 7.775093 TCTGGATGAATTCACTATTAAGGGTTG 59.225 37.037 11.07 0.00 0.00 3.77
1810 2258 3.518992 AAGGGTTGCCTACAGCTTTAA 57.481 42.857 0.00 0.00 44.23 1.52
1871 2321 4.210537 CACTTTTAACACGTGGTGTAGGAG 59.789 45.833 18.38 9.32 46.79 3.69
1930 2380 2.003301 GCTACTGTTGCCTTAGTCAGC 58.997 52.381 2.72 0.00 0.00 4.26
2011 2467 7.557719 ACCTCCAATGGTATTCTTTATTGAGTG 59.442 37.037 0.00 0.00 38.79 3.51
2027 2483 5.630661 TTGAGTGTAGAGACTGCTAACTC 57.369 43.478 0.00 0.00 33.73 3.01
2037 2493 5.355910 AGAGACTGCTAACTCTAGTTACAGC 59.644 44.000 20.36 15.90 40.98 4.40
2038 2494 5.010933 AGACTGCTAACTCTAGTTACAGCA 58.989 41.667 15.82 15.82 43.38 4.41
2039 2495 5.654650 AGACTGCTAACTCTAGTTACAGCAT 59.345 40.000 16.64 9.80 44.06 3.79
2040 2496 6.829298 AGACTGCTAACTCTAGTTACAGCATA 59.171 38.462 16.64 1.09 44.06 3.14
2041 2497 7.012894 AGACTGCTAACTCTAGTTACAGCATAG 59.987 40.741 16.64 10.90 44.06 2.23
2042 2498 6.039941 ACTGCTAACTCTAGTTACAGCATAGG 59.960 42.308 16.64 10.39 44.06 2.57
2043 2499 5.892119 TGCTAACTCTAGTTACAGCATAGGT 59.108 40.000 13.68 0.00 41.79 3.08
2044 2500 7.058525 TGCTAACTCTAGTTACAGCATAGGTA 58.941 38.462 13.68 0.00 41.79 3.08
2045 2501 7.013083 TGCTAACTCTAGTTACAGCATAGGTAC 59.987 40.741 13.68 0.00 41.79 3.34
2046 2502 7.013083 GCTAACTCTAGTTACAGCATAGGTACA 59.987 40.741 11.13 0.00 38.69 2.90
2047 2503 6.945938 ACTCTAGTTACAGCATAGGTACAG 57.054 41.667 0.00 0.00 0.00 2.74
2048 2504 5.828859 ACTCTAGTTACAGCATAGGTACAGG 59.171 44.000 0.00 0.00 0.00 4.00
2070 2526 5.293560 GGAGCATATCCTTAGTCAGTTGTC 58.706 45.833 0.00 0.00 45.64 3.18
2076 2532 7.865385 GCATATCCTTAGTCAGTTGTCTTCTAG 59.135 40.741 0.00 0.00 0.00 2.43
2171 2627 7.435068 TTTTTCTTACTATGGAGAGCAACAC 57.565 36.000 0.00 0.00 0.00 3.32
2193 2649 2.424956 GGCAGGCAGTTTATTTGAGGAG 59.575 50.000 0.00 0.00 0.00 3.69
2200 2657 4.034510 GCAGTTTATTTGAGGAGATCACCG 59.965 45.833 3.31 0.00 37.77 4.94
2204 2661 1.879575 TTTGAGGAGATCACCGGGAT 58.120 50.000 6.32 5.67 37.77 3.85
2249 2709 4.101114 TGATATGGTGTTCCTGGTACACT 58.899 43.478 28.21 16.61 44.10 3.55
2254 2714 2.480845 GTGTTCCTGGTACACTCACAC 58.519 52.381 24.18 9.74 41.99 3.82
2263 2723 5.024785 TGGTACACTCACACATGTGTTAA 57.975 39.130 28.64 18.09 43.88 2.01
2278 2738 4.987832 TGTGTTAACATGTTGAACCACAC 58.012 39.130 21.42 21.19 35.01 3.82
2304 2992 9.976511 CAAATATTCTATGCCTTGATGTCATTT 57.023 29.630 0.00 0.00 0.00 2.32
2338 3026 5.367302 ACAACACATTTGCTGCCTTAATTT 58.633 33.333 0.00 0.00 0.00 1.82
2401 3097 4.236527 AGTTCTGGAGTGGTCTTGTTTT 57.763 40.909 0.00 0.00 0.00 2.43
2402 3098 4.600062 AGTTCTGGAGTGGTCTTGTTTTT 58.400 39.130 0.00 0.00 0.00 1.94
2447 3149 7.613022 TCCTAATTTCTTGTGCTTTCATGATCT 59.387 33.333 0.00 0.00 0.00 2.75
2448 3150 8.896744 CCTAATTTCTTGTGCTTTCATGATCTA 58.103 33.333 0.00 0.00 0.00 1.98
2457 3159 8.315391 TGTGCTTTCATGATCTATATTACAGC 57.685 34.615 0.00 0.00 0.00 4.40
2458 3160 7.933033 TGTGCTTTCATGATCTATATTACAGCA 59.067 33.333 0.00 0.00 0.00 4.41
2459 3161 8.944029 GTGCTTTCATGATCTATATTACAGCAT 58.056 33.333 0.00 0.00 0.00 3.79
2512 3214 9.462174 TGAAATGTAATGAACAGAATTGTGAAC 57.538 29.630 9.96 3.53 42.70 3.18
2523 3225 8.687824 AACAGAATTGTGAACTTTTTGTGTAG 57.312 30.769 9.96 0.00 37.67 2.74
2561 3263 6.994421 ATGGTTTGTTTATTCCCTTCTTGT 57.006 33.333 0.00 0.00 0.00 3.16
2582 3284 5.643664 TGTATCAAGAATGCATTGCTCAAC 58.356 37.500 18.59 8.36 0.00 3.18
2584 3286 4.794278 TCAAGAATGCATTGCTCAACAT 57.206 36.364 18.59 0.00 0.00 2.71
2591 3293 8.556213 AGAATGCATTGCTCAACATTTTATTT 57.444 26.923 18.59 0.00 33.07 1.40
2592 3294 9.005777 AGAATGCATTGCTCAACATTTTATTTT 57.994 25.926 18.59 0.00 33.07 1.82
2627 3329 2.156917 CTGCAGTGCTTCTGAATTCCA 58.843 47.619 17.60 0.00 46.27 3.53
2703 3405 4.566759 GCACACCTTTTCCTTTTTCTTGTC 59.433 41.667 0.00 0.00 0.00 3.18
2809 3511 9.696917 AGGTTTCTTTCTGCTATTATTTTGTTG 57.303 29.630 0.00 0.00 0.00 3.33
2810 3512 9.476202 GGTTTCTTTCTGCTATTATTTTGTTGT 57.524 29.630 0.00 0.00 0.00 3.32
2877 3579 2.239402 TCTGCAGGTTTATGCTGATGGA 59.761 45.455 15.13 0.00 45.60 3.41
2968 3670 2.046313 CTGCAACTGTTTCACGCATTC 58.954 47.619 4.09 0.00 31.10 2.67
2998 3700 7.648142 TCTTTGACTGGTTTGTTCATTATGTC 58.352 34.615 0.00 0.00 0.00 3.06
3041 3743 4.017126 GGCAGCTGTAATTTACCCTTCTT 58.983 43.478 16.64 0.00 0.00 2.52
3094 3796 2.693074 GGAGGACAGGAAACAAAAAGCA 59.307 45.455 0.00 0.00 0.00 3.91
3369 4071 6.373186 TCTGCATGATCAAGATGAAATGAC 57.627 37.500 0.00 0.00 30.50 3.06
3380 4082 4.099633 AGATGAAATGACAGGTCCTCAGA 58.900 43.478 0.00 0.00 0.00 3.27
3399 4101 6.426328 CCTCAGAATTCATATGTAAGCTGGTC 59.574 42.308 8.44 0.00 0.00 4.02
3461 4163 1.134280 ACATCAGCATGGTCACCTAGC 60.134 52.381 0.00 0.00 36.16 3.42
3462 4164 1.140452 CATCAGCATGGTCACCTAGCT 59.860 52.381 7.68 7.68 35.47 3.32
3463 4165 2.159179 TCAGCATGGTCACCTAGCTA 57.841 50.000 12.47 0.00 33.95 3.32
3464 4166 1.757118 TCAGCATGGTCACCTAGCTAC 59.243 52.381 12.47 0.00 33.95 3.58
3465 4167 1.759445 CAGCATGGTCACCTAGCTACT 59.241 52.381 12.47 0.00 33.95 2.57
3466 4168 2.959030 CAGCATGGTCACCTAGCTACTA 59.041 50.000 12.47 0.00 33.95 1.82
3467 4169 2.959707 AGCATGGTCACCTAGCTACTAC 59.040 50.000 11.36 0.00 33.95 2.73
3468 4170 2.036089 GCATGGTCACCTAGCTACTACC 59.964 54.545 0.00 0.00 0.00 3.18
3469 4171 3.567397 CATGGTCACCTAGCTACTACCT 58.433 50.000 0.00 0.00 0.00 3.08
3470 4172 4.726583 CATGGTCACCTAGCTACTACCTA 58.273 47.826 0.00 0.29 0.00 3.08
3471 4173 4.162040 TGGTCACCTAGCTACTACCTAC 57.838 50.000 0.00 0.00 0.00 3.18
3472 4174 3.784763 TGGTCACCTAGCTACTACCTACT 59.215 47.826 0.00 0.00 0.00 2.57
3473 4175 4.971282 TGGTCACCTAGCTACTACCTACTA 59.029 45.833 0.00 0.00 0.00 1.82
3474 4176 5.071519 TGGTCACCTAGCTACTACCTACTAG 59.928 48.000 0.00 0.00 33.42 2.57
3485 4187 9.657728 AGCTACTACCTACTAGGAAATAATTGT 57.342 33.333 9.28 0.00 37.67 2.71
3500 4204 7.870445 GGAAATAATTGTGTCCTTTTGTGCTTA 59.130 33.333 4.18 0.00 0.00 3.09
3534 4238 8.597167 TCATTTATCTCCGTGGAATATTGATCT 58.403 33.333 0.00 0.00 0.00 2.75
3602 4307 3.276857 CTGTGGTCAGCTTGATTATGCT 58.723 45.455 0.00 0.00 37.76 3.79
3634 4339 7.636150 TGCTACTAGGTCGTCTTTTATAAGT 57.364 36.000 0.00 0.00 32.98 2.24
3860 4579 2.169352 ACATGGGATCTTTCTGAGACGG 59.831 50.000 0.00 0.00 37.17 4.79
3884 4603 6.199393 GTGTACATCAACTTTGTCCAGAAAC 58.801 40.000 0.00 0.00 0.00 2.78
3936 4655 6.128634 GCCTTGCAAGAAGAAATCAAGAAATG 60.129 38.462 28.05 5.59 37.03 2.32
3991 4710 4.591321 ACCTCATTGGAGAAAAGGCATA 57.409 40.909 0.00 0.00 44.26 3.14
4017 4736 1.898154 GAGTAAAGCTCGGGGCAGA 59.102 57.895 1.17 0.00 44.79 4.26
4026 4745 1.228124 TCGGGGCAGACAAAGGTTG 60.228 57.895 0.00 0.00 0.00 3.77
4033 4752 3.883489 GGGCAGACAAAGGTTGGATATAC 59.117 47.826 0.00 0.00 34.12 1.47
4034 4753 4.523083 GGCAGACAAAGGTTGGATATACA 58.477 43.478 0.00 0.00 34.12 2.29
4075 4794 5.245075 GGAGACCAAGTCCATCTAAGATAGG 59.755 48.000 0.00 0.00 33.84 2.57
4083 4802 8.482128 CAAGTCCATCTAAGATAGGTTTCTCTT 58.518 37.037 0.00 0.00 35.88 2.85
4129 4848 3.744660 ACATCAGTTCTCACCTGGTTTC 58.255 45.455 0.00 0.00 0.00 2.78
4140 4859 6.889198 TCTCACCTGGTTTCCTTAGATTATG 58.111 40.000 0.00 0.00 0.00 1.90
4155 4874 5.804944 AGATTATGTCCTGTCATCTCCTG 57.195 43.478 0.00 0.00 0.00 3.86
4172 4891 4.400251 TCTCCTGCTTGCATTTGGATTTAG 59.600 41.667 0.00 0.00 0.00 1.85
4188 4907 6.431722 TGGATTTAGATTTTCTTTCCCGGAT 58.568 36.000 0.73 0.00 0.00 4.18
4196 4915 3.799432 TTCTTTCCCGGATTTGGAAGA 57.201 42.857 0.73 0.00 42.57 2.87
4199 4918 3.824443 TCTTTCCCGGATTTGGAAGAAAC 59.176 43.478 0.73 0.00 42.57 2.78
4209 4928 0.555769 TGGAAGAAACACCAGGCCTT 59.444 50.000 0.00 0.00 0.00 4.35
4210 4929 0.961753 GGAAGAAACACCAGGCCTTG 59.038 55.000 0.00 0.68 0.00 3.61
4222 4941 3.102204 CCAGGCCTTGAGGATTTCAAAT 58.898 45.455 0.00 0.00 44.84 2.32
4231 4950 3.833650 TGAGGATTTCAAATGGTGTGCAT 59.166 39.130 0.00 0.00 31.34 3.96
4243 4962 8.210265 TCAAATGGTGTGCATAATGACTAGATA 58.790 33.333 0.00 0.00 0.00 1.98
4295 5014 6.436843 AAACTTAATCCAGGATTAGTTGCG 57.563 37.500 23.80 14.66 36.15 4.85
4328 5047 5.854010 TGTATTAGGACAGAGTAGCTTGG 57.146 43.478 0.00 0.00 0.00 3.61
4404 5150 7.523293 TTGTATTTGGTTCTGAACATGTCAT 57.477 32.000 21.01 8.49 35.07 3.06
4429 5175 9.950496 ATAGTCTGACAATCAACTTTCTACATT 57.050 29.630 10.88 0.00 0.00 2.71
4475 5221 4.324267 ACACCTATTGTTCTAAGTGTGGC 58.676 43.478 0.00 0.00 37.10 5.01
4481 5227 0.984995 GTTCTAAGTGTGGCCTCCCT 59.015 55.000 3.32 0.00 0.00 4.20
4530 5276 2.434884 CCATTCTGCCGCGACAGT 60.435 61.111 21.98 0.43 38.84 3.55
4569 5315 1.961394 GCCGACCTCTGGATATACACA 59.039 52.381 0.00 0.00 0.00 3.72
4578 5324 7.298374 ACCTCTGGATATACACAGATAACAGA 58.702 38.462 8.24 0.00 42.33 3.41
4711 5457 1.140252 ACGTAAAGTGACCCTGTGCTT 59.860 47.619 0.00 0.00 0.00 3.91
4778 5524 6.490040 AGTGCTGTAGACATTACCAATTGTTT 59.510 34.615 4.43 0.00 0.00 2.83
5003 5750 4.867047 GTGTGATGATGTGTTAGGAGTCTG 59.133 45.833 0.00 0.00 0.00 3.51
5105 5853 1.912763 GCCTGTTTGGGGGAATGCA 60.913 57.895 0.00 0.00 36.00 3.96
5137 5885 5.647589 AGAATACGCTCTGTTCGATGTTTA 58.352 37.500 0.00 0.00 0.00 2.01
5171 5919 3.244112 GCAGTGTGTACTTAGGTCCTGTT 60.244 47.826 0.00 0.00 34.07 3.16
5183 5931 1.202557 GGTCCTGTTGGAACGTGTGTA 60.203 52.381 0.00 0.00 45.18 2.90
5188 5936 3.314080 CCTGTTGGAACGTGTGTATTTGT 59.686 43.478 0.00 0.00 34.57 2.83
5190 5938 3.001431 TGTTGGAACGTGTGTATTTGTCG 59.999 43.478 0.00 0.00 0.00 4.35
5195 5943 3.247563 ACGTGTGTATTTGTCGCAAAG 57.752 42.857 10.06 0.00 0.00 2.77
5222 5971 3.069158 CAGGAATCCATTTGATTGAGGCC 59.931 47.826 0.61 0.00 43.81 5.19
5223 5972 3.052338 AGGAATCCATTTGATTGAGGCCT 60.052 43.478 3.86 3.86 43.81 5.19
5224 5973 3.708121 GGAATCCATTTGATTGAGGCCTT 59.292 43.478 6.77 0.00 43.81 4.35
5225 5974 4.202192 GGAATCCATTTGATTGAGGCCTTC 60.202 45.833 6.77 0.00 43.81 3.46
5226 5975 3.744940 TCCATTTGATTGAGGCCTTCT 57.255 42.857 6.77 0.00 0.00 2.85
5227 5976 4.051661 TCCATTTGATTGAGGCCTTCTT 57.948 40.909 6.77 0.00 0.00 2.52
5239 5988 2.649816 AGGCCTTCTTTGGTTCATAGGT 59.350 45.455 0.00 0.00 0.00 3.08
5240 5989 3.850173 AGGCCTTCTTTGGTTCATAGGTA 59.150 43.478 0.00 0.00 0.00 3.08
5241 5990 4.080299 AGGCCTTCTTTGGTTCATAGGTAG 60.080 45.833 0.00 0.00 0.00 3.18
5242 5991 4.200092 GCCTTCTTTGGTTCATAGGTAGG 58.800 47.826 0.00 0.00 0.00 3.18
5243 5992 4.080526 GCCTTCTTTGGTTCATAGGTAGGA 60.081 45.833 0.00 0.00 0.00 2.94
5244 5993 5.675538 CCTTCTTTGGTTCATAGGTAGGAG 58.324 45.833 0.00 0.00 0.00 3.69
5245 5994 5.189934 CCTTCTTTGGTTCATAGGTAGGAGT 59.810 44.000 0.00 0.00 0.00 3.85
5249 5998 9.670442 TTCTTTGGTTCATAGGTAGGAGTATAT 57.330 33.333 0.00 0.00 0.00 0.86
5254 6003 9.529823 TGGTTCATAGGTAGGAGTATATTGTAG 57.470 37.037 0.00 0.00 0.00 2.74
5315 6064 9.487790 TTTTAAGCCCTTTGATTTGTAGAAATG 57.512 29.630 2.01 0.00 31.58 2.32
5316 6065 5.665916 AGCCCTTTGATTTGTAGAAATGG 57.334 39.130 2.01 0.00 31.58 3.16
5317 6066 5.332743 AGCCCTTTGATTTGTAGAAATGGA 58.667 37.500 2.01 0.00 31.58 3.41
5318 6067 5.960202 AGCCCTTTGATTTGTAGAAATGGAT 59.040 36.000 2.01 0.00 31.58 3.41
5319 6068 6.441604 AGCCCTTTGATTTGTAGAAATGGATT 59.558 34.615 2.01 0.00 31.58 3.01
5320 6069 7.038088 AGCCCTTTGATTTGTAGAAATGGATTT 60.038 33.333 2.01 0.00 31.58 2.17
5321 6070 7.064966 GCCCTTTGATTTGTAGAAATGGATTTG 59.935 37.037 2.01 0.00 31.58 2.32
5322 6071 8.096414 CCCTTTGATTTGTAGAAATGGATTTGT 58.904 33.333 2.01 0.00 31.58 2.83
5360 6109 8.693542 GATGTCAATCCTTCATGTTTTAAAGG 57.306 34.615 4.15 4.15 40.80 3.11
5404 6153 9.942850 TCTATCAAATGACATGTCTTTCTTACA 57.057 29.630 25.55 4.75 0.00 2.41
5407 6156 8.853077 TCAAATGACATGTCTTTCTTACATCT 57.147 30.769 25.55 6.35 35.39 2.90
5408 6157 9.288576 TCAAATGACATGTCTTTCTTACATCTT 57.711 29.630 25.55 5.69 35.39 2.40
5409 6158 9.903682 CAAATGACATGTCTTTCTTACATCTTT 57.096 29.630 25.55 5.03 35.39 2.52
5477 6226 8.980481 TTCTATAGGAAATTTAGAGCCCTTTG 57.020 34.615 0.00 0.00 0.00 2.77
5478 6227 7.518188 TCTATAGGAAATTTAGAGCCCTTTGG 58.482 38.462 0.00 0.00 0.00 3.28
5479 6228 4.404185 AGGAAATTTAGAGCCCTTTGGT 57.596 40.909 0.00 0.00 0.00 3.67
5480 6229 4.752063 AGGAAATTTAGAGCCCTTTGGTT 58.248 39.130 0.00 0.00 0.00 3.67
5481 6230 5.155161 AGGAAATTTAGAGCCCTTTGGTTT 58.845 37.500 0.00 0.00 0.00 3.27
5482 6231 6.319715 AGGAAATTTAGAGCCCTTTGGTTTA 58.680 36.000 0.00 0.00 0.00 2.01
5483 6232 6.959954 AGGAAATTTAGAGCCCTTTGGTTTAT 59.040 34.615 0.00 0.00 0.00 1.40
5484 6233 8.119891 AGGAAATTTAGAGCCCTTTGGTTTATA 58.880 33.333 0.00 0.00 0.00 0.98
5485 6234 8.755028 GGAAATTTAGAGCCCTTTGGTTTATAA 58.245 33.333 0.00 0.00 0.00 0.98
5486 6235 9.803315 GAAATTTAGAGCCCTTTGGTTTATAAG 57.197 33.333 0.00 0.00 0.00 1.73
5487 6236 9.541884 AAATTTAGAGCCCTTTGGTTTATAAGA 57.458 29.630 0.00 0.00 0.00 2.10
5488 6237 9.541884 AATTTAGAGCCCTTTGGTTTATAAGAA 57.458 29.630 0.00 0.00 0.00 2.52
5489 6238 7.933215 TTAGAGCCCTTTGGTTTATAAGAAC 57.067 36.000 0.00 0.00 0.00 3.01
5490 6239 5.887754 AGAGCCCTTTGGTTTATAAGAACA 58.112 37.500 0.00 0.00 0.00 3.18
5491 6240 5.946377 AGAGCCCTTTGGTTTATAAGAACAG 59.054 40.000 0.00 0.00 0.00 3.16
5492 6241 5.887754 AGCCCTTTGGTTTATAAGAACAGA 58.112 37.500 0.00 0.00 0.00 3.41
5493 6242 6.311735 AGCCCTTTGGTTTATAAGAACAGAA 58.688 36.000 0.00 0.00 0.00 3.02
5494 6243 6.954102 AGCCCTTTGGTTTATAAGAACAGAAT 59.046 34.615 0.00 0.00 0.00 2.40
5495 6244 8.113462 AGCCCTTTGGTTTATAAGAACAGAATA 58.887 33.333 0.00 0.00 0.00 1.75
5496 6245 8.406297 GCCCTTTGGTTTATAAGAACAGAATAG 58.594 37.037 0.00 0.00 0.00 1.73
5497 6246 9.462606 CCCTTTGGTTTATAAGAACAGAATAGT 57.537 33.333 0.00 0.00 0.00 2.12
5534 6283 8.840833 GGAGTTCTTCCTATCCTTCATATTTC 57.159 38.462 0.00 0.00 43.16 2.17
5535 6284 8.432805 GGAGTTCTTCCTATCCTTCATATTTCA 58.567 37.037 0.00 0.00 43.16 2.69
5613 6362 9.820725 TGATTCAAATGACATCTTTCTTTTTGT 57.179 25.926 0.00 0.00 0.00 2.83
5617 6366 9.874205 TCAAATGACATCTTTCTTTTTGTTTCT 57.126 25.926 0.00 0.00 0.00 2.52
5660 6409 7.765695 AAATCAAAGAAGGTCTTCATAGCAA 57.234 32.000 12.54 0.00 41.84 3.91
5661 6410 7.951347 AATCAAAGAAGGTCTTCATAGCAAT 57.049 32.000 12.54 0.00 41.84 3.56
5662 6411 7.951347 ATCAAAGAAGGTCTTCATAGCAATT 57.049 32.000 12.54 0.00 41.84 2.32
5663 6412 9.466497 AATCAAAGAAGGTCTTCATAGCAATTA 57.534 29.630 12.54 0.00 41.84 1.40
5664 6413 8.862325 TCAAAGAAGGTCTTCATAGCAATTAA 57.138 30.769 12.54 0.00 41.84 1.40
5665 6414 8.950210 TCAAAGAAGGTCTTCATAGCAATTAAG 58.050 33.333 12.54 0.00 41.84 1.85
5666 6415 8.950210 CAAAGAAGGTCTTCATAGCAATTAAGA 58.050 33.333 12.54 0.00 41.84 2.10
5667 6416 9.692325 AAAGAAGGTCTTCATAGCAATTAAGAT 57.308 29.630 12.54 0.00 41.84 2.40
5668 6417 8.674263 AGAAGGTCTTCATAGCAATTAAGATG 57.326 34.615 12.54 0.00 41.84 2.90
5669 6418 8.270744 AGAAGGTCTTCATAGCAATTAAGATGT 58.729 33.333 12.54 0.00 41.84 3.06
5670 6419 9.547753 GAAGGTCTTCATAGCAATTAAGATGTA 57.452 33.333 5.90 0.00 39.31 2.29
5672 6421 9.499479 AGGTCTTCATAGCAATTAAGATGTATG 57.501 33.333 0.00 0.00 30.17 2.39
5673 6422 9.277783 GGTCTTCATAGCAATTAAGATGTATGT 57.722 33.333 0.00 0.00 30.17 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.792047 CATCCACCGCGCACAGTG 61.792 66.667 8.75 11.78 0.00 3.66
2 3 2.443260 TAACATCCACCGCGCACAGT 62.443 55.000 8.75 0.00 0.00 3.55
3 4 1.739929 TAACATCCACCGCGCACAG 60.740 57.895 8.75 0.00 0.00 3.66
4 5 2.030401 GTAACATCCACCGCGCACA 61.030 57.895 8.75 0.00 0.00 4.57
5 6 2.746803 GGTAACATCCACCGCGCAC 61.747 63.158 8.75 0.00 0.00 5.34
6 7 2.435234 GGTAACATCCACCGCGCA 60.435 61.111 8.75 0.00 0.00 6.09
13 14 1.760613 GAGGTGGATCGGTAACATCCA 59.239 52.381 7.58 7.58 45.74 3.41
14 15 1.070289 GGAGGTGGATCGGTAACATCC 59.930 57.143 0.00 0.00 41.71 3.51
15 16 1.070289 GGGAGGTGGATCGGTAACATC 59.930 57.143 0.00 0.00 0.00 3.06
16 17 1.129058 GGGAGGTGGATCGGTAACAT 58.871 55.000 0.00 0.00 0.00 2.71
17 18 0.252330 TGGGAGGTGGATCGGTAACA 60.252 55.000 0.00 0.00 0.00 2.41
18 19 0.906775 TTGGGAGGTGGATCGGTAAC 59.093 55.000 0.00 0.00 0.00 2.50
19 20 1.200519 CTTGGGAGGTGGATCGGTAA 58.799 55.000 0.00 0.00 0.00 2.85
20 21 1.335132 GCTTGGGAGGTGGATCGGTA 61.335 60.000 0.00 0.00 0.00 4.02
21 22 2.670148 GCTTGGGAGGTGGATCGGT 61.670 63.158 0.00 0.00 0.00 4.69
22 23 1.915078 AAGCTTGGGAGGTGGATCGG 61.915 60.000 0.00 0.00 33.01 4.18
23 24 0.462759 GAAGCTTGGGAGGTGGATCG 60.463 60.000 2.10 0.00 33.01 3.69
24 25 0.620556 TGAAGCTTGGGAGGTGGATC 59.379 55.000 2.10 0.00 33.01 3.36
25 26 0.622665 CTGAAGCTTGGGAGGTGGAT 59.377 55.000 2.10 0.00 33.01 3.41
26 27 0.473694 TCTGAAGCTTGGGAGGTGGA 60.474 55.000 2.10 0.00 33.01 4.02
27 28 0.401738 TTCTGAAGCTTGGGAGGTGG 59.598 55.000 2.10 0.00 33.01 4.61
28 29 1.612726 CCTTCTGAAGCTTGGGAGGTG 60.613 57.143 2.10 0.00 33.01 4.00
29 30 0.695347 CCTTCTGAAGCTTGGGAGGT 59.305 55.000 2.10 0.00 34.43 3.85
30 31 0.695347 ACCTTCTGAAGCTTGGGAGG 59.305 55.000 17.40 17.40 0.00 4.30
31 32 1.818642 CACCTTCTGAAGCTTGGGAG 58.181 55.000 2.10 0.00 0.00 4.30
32 33 0.250901 GCACCTTCTGAAGCTTGGGA 60.251 55.000 2.10 0.00 0.00 4.37
33 34 0.538057 TGCACCTTCTGAAGCTTGGG 60.538 55.000 2.10 1.61 0.00 4.12
34 35 0.879765 CTGCACCTTCTGAAGCTTGG 59.120 55.000 2.10 0.00 0.00 3.61
39 40 2.684843 GCCGCTGCACCTTCTGAAG 61.685 63.158 10.46 10.46 37.47 3.02
40 41 2.669569 GCCGCTGCACCTTCTGAA 60.670 61.111 0.00 0.00 37.47 3.02
55 56 4.815108 AATTTCCCCCTCGCCGCC 62.815 66.667 0.00 0.00 0.00 6.13
56 57 1.884075 AAAAATTTCCCCCTCGCCGC 61.884 55.000 0.00 0.00 0.00 6.53
57 58 2.272923 AAAAATTTCCCCCTCGCCG 58.727 52.632 0.00 0.00 0.00 6.46
74 75 7.375053 GTTACATTGGTATTCAGAGCCAAAAA 58.625 34.615 7.11 2.03 44.26 1.94
75 76 6.348950 CGTTACATTGGTATTCAGAGCCAAAA 60.349 38.462 7.11 0.00 44.26 2.44
76 77 5.123186 CGTTACATTGGTATTCAGAGCCAAA 59.877 40.000 7.11 0.00 44.26 3.28
77 78 4.634004 CGTTACATTGGTATTCAGAGCCAA 59.366 41.667 0.00 0.00 45.02 4.52
78 79 4.188462 CGTTACATTGGTATTCAGAGCCA 58.812 43.478 0.00 0.00 0.00 4.75
79 80 3.002348 GCGTTACATTGGTATTCAGAGCC 59.998 47.826 0.00 0.00 0.00 4.70
80 81 3.002348 GGCGTTACATTGGTATTCAGAGC 59.998 47.826 0.00 0.00 0.00 4.09
81 82 3.560068 GGGCGTTACATTGGTATTCAGAG 59.440 47.826 0.00 0.00 0.00 3.35
82 83 3.537580 GGGCGTTACATTGGTATTCAGA 58.462 45.455 0.00 0.00 0.00 3.27
83 84 2.616842 GGGGCGTTACATTGGTATTCAG 59.383 50.000 0.00 0.00 0.00 3.02
84 85 2.240160 AGGGGCGTTACATTGGTATTCA 59.760 45.455 0.00 0.00 0.00 2.57
85 86 2.616842 CAGGGGCGTTACATTGGTATTC 59.383 50.000 0.00 0.00 0.00 1.75
86 87 2.240160 TCAGGGGCGTTACATTGGTATT 59.760 45.455 0.00 0.00 0.00 1.89
87 88 1.841277 TCAGGGGCGTTACATTGGTAT 59.159 47.619 0.00 0.00 0.00 2.73
88 89 1.277579 TCAGGGGCGTTACATTGGTA 58.722 50.000 0.00 0.00 0.00 3.25
89 90 0.623723 ATCAGGGGCGTTACATTGGT 59.376 50.000 0.00 0.00 0.00 3.67
90 91 1.308998 GATCAGGGGCGTTACATTGG 58.691 55.000 0.00 0.00 0.00 3.16
91 92 0.937304 CGATCAGGGGCGTTACATTG 59.063 55.000 0.00 0.00 0.00 2.82
92 93 0.179056 CCGATCAGGGGCGTTACATT 60.179 55.000 0.00 0.00 35.97 2.71
93 94 1.445942 CCGATCAGGGGCGTTACAT 59.554 57.895 0.00 0.00 35.97 2.29
94 95 2.897207 CCGATCAGGGGCGTTACA 59.103 61.111 0.00 0.00 35.97 2.41
103 104 1.915769 GATCCCCTCCCCGATCAGG 60.916 68.421 0.00 0.00 35.88 3.86
104 105 2.279069 CGATCCCCTCCCCGATCAG 61.279 68.421 0.00 0.00 35.61 2.90
105 106 2.203640 CGATCCCCTCCCCGATCA 60.204 66.667 0.00 0.00 35.61 2.92
106 107 2.997897 CCGATCCCCTCCCCGATC 60.998 72.222 0.00 0.00 33.06 3.69
111 112 2.783122 TAGATCGCCGATCCCCTCCC 62.783 65.000 22.61 0.00 39.66 4.30
112 113 1.304217 TAGATCGCCGATCCCCTCC 60.304 63.158 22.61 0.00 39.66 4.30
113 114 0.322636 TCTAGATCGCCGATCCCCTC 60.323 60.000 22.61 0.00 39.66 4.30
114 115 0.322997 CTCTAGATCGCCGATCCCCT 60.323 60.000 22.61 7.95 39.66 4.79
115 116 0.609681 ACTCTAGATCGCCGATCCCC 60.610 60.000 22.61 0.00 39.66 4.81
116 117 2.011222 CTACTCTAGATCGCCGATCCC 58.989 57.143 22.61 0.19 39.66 3.85
117 118 2.011222 CCTACTCTAGATCGCCGATCC 58.989 57.143 22.61 6.00 39.66 3.36
118 119 2.417239 CACCTACTCTAGATCGCCGATC 59.583 54.545 19.09 19.09 39.17 3.69
119 120 2.038689 TCACCTACTCTAGATCGCCGAT 59.961 50.000 0.00 0.00 0.00 4.18
120 121 1.415289 TCACCTACTCTAGATCGCCGA 59.585 52.381 0.00 0.00 0.00 5.54
121 122 1.801771 CTCACCTACTCTAGATCGCCG 59.198 57.143 0.00 0.00 0.00 6.46
122 123 3.071479 CTCTCACCTACTCTAGATCGCC 58.929 54.545 0.00 0.00 0.00 5.54
123 124 3.071479 CCTCTCACCTACTCTAGATCGC 58.929 54.545 0.00 0.00 0.00 4.58
124 125 3.325425 TCCCTCTCACCTACTCTAGATCG 59.675 52.174 0.00 0.00 0.00 3.69
125 126 4.806286 GCTCCCTCTCACCTACTCTAGATC 60.806 54.167 0.00 0.00 0.00 2.75
126 127 3.073946 GCTCCCTCTCACCTACTCTAGAT 59.926 52.174 0.00 0.00 0.00 1.98
127 128 2.440253 GCTCCCTCTCACCTACTCTAGA 59.560 54.545 0.00 0.00 0.00 2.43
128 129 2.173782 TGCTCCCTCTCACCTACTCTAG 59.826 54.545 0.00 0.00 0.00 2.43
129 130 2.173782 CTGCTCCCTCTCACCTACTCTA 59.826 54.545 0.00 0.00 0.00 2.43
130 131 1.003646 TGCTCCCTCTCACCTACTCT 58.996 55.000 0.00 0.00 0.00 3.24
131 132 1.398692 CTGCTCCCTCTCACCTACTC 58.601 60.000 0.00 0.00 0.00 2.59
132 133 0.032615 CCTGCTCCCTCTCACCTACT 60.033 60.000 0.00 0.00 0.00 2.57
133 134 0.324830 ACCTGCTCCCTCTCACCTAC 60.325 60.000 0.00 0.00 0.00 3.18
134 135 0.324738 CACCTGCTCCCTCTCACCTA 60.325 60.000 0.00 0.00 0.00 3.08
135 136 1.611851 CACCTGCTCCCTCTCACCT 60.612 63.158 0.00 0.00 0.00 4.00
136 137 1.610673 TCACCTGCTCCCTCTCACC 60.611 63.158 0.00 0.00 0.00 4.02
137 138 1.612395 CCTCACCTGCTCCCTCTCAC 61.612 65.000 0.00 0.00 0.00 3.51
138 139 1.305633 CCTCACCTGCTCCCTCTCA 60.306 63.158 0.00 0.00 0.00 3.27
139 140 0.616111 TTCCTCACCTGCTCCCTCTC 60.616 60.000 0.00 0.00 0.00 3.20
140 141 0.617249 CTTCCTCACCTGCTCCCTCT 60.617 60.000 0.00 0.00 0.00 3.69
141 142 1.621672 CCTTCCTCACCTGCTCCCTC 61.622 65.000 0.00 0.00 0.00 4.30
142 143 1.614824 CCTTCCTCACCTGCTCCCT 60.615 63.158 0.00 0.00 0.00 4.20
143 144 2.674220 CCCTTCCTCACCTGCTCCC 61.674 68.421 0.00 0.00 0.00 4.30
144 145 2.674220 CCCCTTCCTCACCTGCTCC 61.674 68.421 0.00 0.00 0.00 4.70
145 146 0.985490 ATCCCCTTCCTCACCTGCTC 60.985 60.000 0.00 0.00 0.00 4.26
146 147 1.083706 ATCCCCTTCCTCACCTGCT 59.916 57.895 0.00 0.00 0.00 4.24
147 148 1.225704 CATCCCCTTCCTCACCTGC 59.774 63.158 0.00 0.00 0.00 4.85
148 149 0.835941 CTCATCCCCTTCCTCACCTG 59.164 60.000 0.00 0.00 0.00 4.00
149 150 0.985490 GCTCATCCCCTTCCTCACCT 60.985 60.000 0.00 0.00 0.00 4.00
150 151 0.985490 AGCTCATCCCCTTCCTCACC 60.985 60.000 0.00 0.00 0.00 4.02
151 152 0.915364 AAGCTCATCCCCTTCCTCAC 59.085 55.000 0.00 0.00 0.00 3.51
152 153 0.914644 CAAGCTCATCCCCTTCCTCA 59.085 55.000 0.00 0.00 0.00 3.86
153 154 0.182299 CCAAGCTCATCCCCTTCCTC 59.818 60.000 0.00 0.00 0.00 3.71
154 155 0.253347 TCCAAGCTCATCCCCTTCCT 60.253 55.000 0.00 0.00 0.00 3.36
155 156 0.182299 CTCCAAGCTCATCCCCTTCC 59.818 60.000 0.00 0.00 0.00 3.46
156 157 1.207791 TCTCCAAGCTCATCCCCTTC 58.792 55.000 0.00 0.00 0.00 3.46
157 158 1.563410 CTTCTCCAAGCTCATCCCCTT 59.437 52.381 0.00 0.00 0.00 3.95
158 159 1.211456 CTTCTCCAAGCTCATCCCCT 58.789 55.000 0.00 0.00 0.00 4.79
159 160 0.182299 CCTTCTCCAAGCTCATCCCC 59.818 60.000 0.00 0.00 0.00 4.81
160 161 0.182299 CCCTTCTCCAAGCTCATCCC 59.818 60.000 0.00 0.00 0.00 3.85
161 162 0.182299 CCCCTTCTCCAAGCTCATCC 59.818 60.000 0.00 0.00 0.00 3.51
162 163 0.915364 ACCCCTTCTCCAAGCTCATC 59.085 55.000 0.00 0.00 0.00 2.92
163 164 1.376649 AACCCCTTCTCCAAGCTCAT 58.623 50.000 0.00 0.00 0.00 2.90
164 165 1.909302 CTAACCCCTTCTCCAAGCTCA 59.091 52.381 0.00 0.00 0.00 4.26
165 166 1.210722 CCTAACCCCTTCTCCAAGCTC 59.789 57.143 0.00 0.00 0.00 4.09
166 167 1.203440 TCCTAACCCCTTCTCCAAGCT 60.203 52.381 0.00 0.00 0.00 3.74
167 168 1.286248 TCCTAACCCCTTCTCCAAGC 58.714 55.000 0.00 0.00 0.00 4.01
168 169 3.267031 ACAATCCTAACCCCTTCTCCAAG 59.733 47.826 0.00 0.00 0.00 3.61
169 170 3.265489 ACAATCCTAACCCCTTCTCCAA 58.735 45.455 0.00 0.00 0.00 3.53
170 171 2.929301 ACAATCCTAACCCCTTCTCCA 58.071 47.619 0.00 0.00 0.00 3.86
171 172 4.296056 TCTACAATCCTAACCCCTTCTCC 58.704 47.826 0.00 0.00 0.00 3.71
172 173 4.345547 CCTCTACAATCCTAACCCCTTCTC 59.654 50.000 0.00 0.00 0.00 2.87
173 174 4.015541 TCCTCTACAATCCTAACCCCTTCT 60.016 45.833 0.00 0.00 0.00 2.85
174 175 4.101274 GTCCTCTACAATCCTAACCCCTTC 59.899 50.000 0.00 0.00 0.00 3.46
175 176 4.038633 GTCCTCTACAATCCTAACCCCTT 58.961 47.826 0.00 0.00 0.00 3.95
176 177 3.013648 TGTCCTCTACAATCCTAACCCCT 59.986 47.826 0.00 0.00 34.29 4.79
177 178 3.134262 GTGTCCTCTACAATCCTAACCCC 59.866 52.174 0.00 0.00 40.63 4.95
178 179 4.031611 AGTGTCCTCTACAATCCTAACCC 58.968 47.826 0.00 0.00 40.63 4.11
179 180 6.786967 TTAGTGTCCTCTACAATCCTAACC 57.213 41.667 0.00 0.00 40.63 2.85
180 181 8.008513 TGATTAGTGTCCTCTACAATCCTAAC 57.991 38.462 0.00 0.00 40.63 2.34
181 182 7.201920 GCTGATTAGTGTCCTCTACAATCCTAA 60.202 40.741 0.00 0.00 40.63 2.69
182 183 6.265649 GCTGATTAGTGTCCTCTACAATCCTA 59.734 42.308 0.00 0.00 40.63 2.94
183 184 5.069781 GCTGATTAGTGTCCTCTACAATCCT 59.930 44.000 0.00 0.00 40.63 3.24
184 185 5.069781 AGCTGATTAGTGTCCTCTACAATCC 59.930 44.000 0.00 0.00 40.63 3.01
185 186 5.982516 CAGCTGATTAGTGTCCTCTACAATC 59.017 44.000 8.42 0.00 40.63 2.67
186 187 5.658634 TCAGCTGATTAGTGTCCTCTACAAT 59.341 40.000 13.74 0.00 40.63 2.71
187 188 5.016831 TCAGCTGATTAGTGTCCTCTACAA 58.983 41.667 13.74 0.00 40.63 2.41
188 189 4.600062 TCAGCTGATTAGTGTCCTCTACA 58.400 43.478 13.74 0.00 35.06 2.74
189 190 5.782893 ATCAGCTGATTAGTGTCCTCTAC 57.217 43.478 23.75 0.00 0.00 2.59
200 201 5.419542 GTGTCACACCTAATCAGCTGATTA 58.580 41.667 35.46 35.46 42.48 1.75
201 202 4.256920 GTGTCACACCTAATCAGCTGATT 58.743 43.478 36.84 36.84 45.77 2.57
202 203 3.866651 GTGTCACACCTAATCAGCTGAT 58.133 45.455 23.75 23.75 36.07 2.90
203 204 3.319137 GTGTCACACCTAATCAGCTGA 57.681 47.619 20.79 20.79 0.00 4.26
215 216 3.715628 AATTTCAGCTTGGTGTCACAC 57.284 42.857 0.00 0.00 0.00 3.82
216 217 4.278170 CCTAAATTTCAGCTTGGTGTCACA 59.722 41.667 5.12 0.00 0.00 3.58
217 218 4.321230 CCCTAAATTTCAGCTTGGTGTCAC 60.321 45.833 0.00 0.00 0.00 3.67
218 219 3.826157 CCCTAAATTTCAGCTTGGTGTCA 59.174 43.478 0.00 0.00 0.00 3.58
219 220 3.367395 GCCCTAAATTTCAGCTTGGTGTC 60.367 47.826 0.00 0.00 0.00 3.67
220 221 2.562738 GCCCTAAATTTCAGCTTGGTGT 59.437 45.455 0.00 0.00 0.00 4.16
221 222 2.562298 TGCCCTAAATTTCAGCTTGGTG 59.438 45.455 0.00 0.00 0.00 4.17
222 223 2.562738 GTGCCCTAAATTTCAGCTTGGT 59.437 45.455 0.00 0.00 0.00 3.67
244 245 4.396166 ACATTTCCAGCAGATCTAAAACGG 59.604 41.667 0.00 0.00 0.00 4.44
285 286 6.375455 GGACTGATTTTAAATGCCAAGAGAGA 59.625 38.462 0.00 0.00 0.00 3.10
286 287 6.376581 AGGACTGATTTTAAATGCCAAGAGAG 59.623 38.462 0.00 0.00 0.00 3.20
287 288 6.151648 CAGGACTGATTTTAAATGCCAAGAGA 59.848 38.462 0.00 0.00 0.00 3.10
294 295 3.430790 GCCCCAGGACTGATTTTAAATGC 60.431 47.826 0.00 0.00 0.00 3.56
329 335 0.539986 TTAAGATCACCTCGGTGGCC 59.460 55.000 15.58 0.00 45.43 5.36
332 338 2.271800 GTGCTTAAGATCACCTCGGTG 58.728 52.381 6.67 9.82 46.64 4.94
335 341 1.929836 GCTGTGCTTAAGATCACCTCG 59.070 52.381 6.67 0.00 32.51 4.63
337 343 2.568956 TGAGCTGTGCTTAAGATCACCT 59.431 45.455 6.67 1.12 39.88 4.00
365 371 0.251564 TAACTTGCCATGTGGGGTGG 60.252 55.000 0.54 0.00 39.80 4.61
374 380 4.415596 TGGGTCAGAAATTAACTTGCCAT 58.584 39.130 0.00 0.00 0.00 4.40
402 408 0.843309 TGGCTTGGTTCAGGTGAAGA 59.157 50.000 0.00 0.00 34.27 2.87
988 1006 0.839946 CTTCCCATGGGTGGTAGGAG 59.160 60.000 30.28 13.23 44.48 3.69
1080 1098 0.687354 GCAGGAAGGAAGGTGTGAGA 59.313 55.000 0.00 0.00 0.00 3.27
1082 1100 0.397941 CAGCAGGAAGGAAGGTGTGA 59.602 55.000 0.00 0.00 0.00 3.58
1083 1101 1.239968 GCAGCAGGAAGGAAGGTGTG 61.240 60.000 0.00 0.00 33.59 3.82
1084 1102 1.073897 GCAGCAGGAAGGAAGGTGT 59.926 57.895 0.00 0.00 33.59 4.16
1103 1439 8.215926 TCAAACAACAGAATTTATATACGGGG 57.784 34.615 0.00 0.00 0.00 5.73
1112 1448 6.418057 AGGCCAATCAAACAACAGAATTTA 57.582 33.333 5.01 0.00 0.00 1.40
1150 1486 1.138459 CAACAGCGCAACAACCACA 59.862 52.632 11.47 0.00 0.00 4.17
1151 1487 2.230264 GCAACAGCGCAACAACCAC 61.230 57.895 11.47 0.00 0.00 4.16
1152 1488 2.103934 GCAACAGCGCAACAACCA 59.896 55.556 11.47 0.00 0.00 3.67
1154 1490 1.945662 CAGGCAACAGCGCAACAAC 60.946 57.895 11.47 0.00 41.41 3.32
1155 1491 1.098129 TACAGGCAACAGCGCAACAA 61.098 50.000 11.47 0.00 41.41 2.83
1168 1504 2.223249 CGCACCACATTTGTATACAGGC 60.223 50.000 5.56 1.32 0.00 4.85
1171 1507 3.060736 ACCGCACCACATTTGTATACA 57.939 42.857 0.08 0.08 0.00 2.29
1173 1509 6.761099 AAAATACCGCACCACATTTGTATA 57.239 33.333 0.00 0.00 0.00 1.47
1174 1510 5.652994 AAAATACCGCACCACATTTGTAT 57.347 34.783 0.00 0.00 0.00 2.29
1175 1511 5.455056 AAAAATACCGCACCACATTTGTA 57.545 34.783 0.00 0.00 0.00 2.41
1176 1512 4.329462 AAAAATACCGCACCACATTTGT 57.671 36.364 0.00 0.00 0.00 2.83
1287 1685 3.683365 ATCAAATCAACCAACCAAGGC 57.317 42.857 0.00 0.00 0.00 4.35
1329 1729 4.136796 TGTCATGACTCAAAACTGGAAGG 58.863 43.478 25.55 0.00 39.30 3.46
1346 1746 5.075493 GGAGCAATAATCCTGGAATGTCAT 58.925 41.667 0.00 0.00 33.77 3.06
1352 1752 6.440010 TCAAAATTGGAGCAATAATCCTGGAA 59.560 34.615 0.00 0.00 37.74 3.53
1584 1986 6.531594 TCGAGAAGAATTGCATTGTACACTAG 59.468 38.462 0.00 0.00 0.00 2.57
1586 1988 5.237815 TCGAGAAGAATTGCATTGTACACT 58.762 37.500 0.00 0.00 0.00 3.55
1593 1995 4.318332 TGTCACTCGAGAAGAATTGCATT 58.682 39.130 21.68 0.00 0.00 3.56
1677 2085 2.611751 TGGCGAAATGATATTGTGGACG 59.388 45.455 0.00 0.00 0.00 4.79
1708 2140 5.762045 ACTAAATCCATGATGCGTAATTGC 58.238 37.500 0.00 0.00 0.00 3.56
1835 2283 9.005777 ACGTGTTAAAAGTGGTACATGATAAAT 57.994 29.630 0.00 0.00 44.52 1.40
1848 2296 4.121317 TCCTACACCACGTGTTAAAAGTG 58.879 43.478 15.65 15.74 45.08 3.16
1871 2321 0.390472 CCCAGAGGAGTCGAAAGCAC 60.390 60.000 0.00 0.00 33.47 4.40
2011 2467 7.466320 GCTGTAACTAGAGTTAGCAGTCTCTAC 60.466 44.444 20.64 6.08 40.74 2.59
2027 2483 5.278561 GCTCCTGTACCTATGCTGTAACTAG 60.279 48.000 0.00 0.00 0.00 2.57
2047 2503 5.069781 AGACAACTGACTAAGGATATGCTCC 59.930 44.000 0.00 0.00 45.33 4.70
2048 2504 6.155475 AGACAACTGACTAAGGATATGCTC 57.845 41.667 0.00 0.00 0.00 4.26
2062 2518 4.100963 TGGTTGAAGCTAGAAGACAACTGA 59.899 41.667 16.03 6.59 40.08 3.41
2068 2524 4.393371 GGAACATGGTTGAAGCTAGAAGAC 59.607 45.833 0.00 0.00 0.00 3.01
2070 2526 4.583871 AGGAACATGGTTGAAGCTAGAAG 58.416 43.478 0.00 0.00 0.00 2.85
2076 2532 4.781934 AGGTATAGGAACATGGTTGAAGC 58.218 43.478 0.00 0.00 0.00 3.86
2151 2607 3.130516 CCGTGTTGCTCTCCATAGTAAGA 59.869 47.826 0.00 0.00 0.00 2.10
2171 2627 1.133025 CCTCAAATAAACTGCCTGCCG 59.867 52.381 0.00 0.00 0.00 5.69
2263 2723 7.288810 AGAATATTTGTGTGGTTCAACATGT 57.711 32.000 0.00 0.00 31.49 3.21
2266 2726 7.312154 GCATAGAATATTTGTGTGGTTCAACA 58.688 34.615 0.00 0.00 0.00 3.33
2268 2728 6.663093 AGGCATAGAATATTTGTGTGGTTCAA 59.337 34.615 0.00 0.00 0.00 2.69
2270 2730 6.699575 AGGCATAGAATATTTGTGTGGTTC 57.300 37.500 0.00 0.00 0.00 3.62
2304 2992 4.798924 GCAAATGTGTTGTTAATGGCCAGA 60.799 41.667 13.05 0.00 0.00 3.86
2353 3049 9.958180 TCATTGACCAACTTTATCAGAGAATAA 57.042 29.630 0.00 0.00 0.00 1.40
2455 3157 7.605691 CTTACAGATAAGGCAAAGCTATATGCT 59.394 37.037 15.89 3.47 42.98 3.79
2456 3158 7.604164 TCTTACAGATAAGGCAAAGCTATATGC 59.396 37.037 9.84 9.84 38.72 3.14
2457 3159 8.930760 GTCTTACAGATAAGGCAAAGCTATATG 58.069 37.037 0.00 0.00 41.83 1.78
2458 3160 8.097662 GGTCTTACAGATAAGGCAAAGCTATAT 58.902 37.037 1.49 0.00 43.67 0.86
2459 3161 7.070696 TGGTCTTACAGATAAGGCAAAGCTATA 59.929 37.037 1.49 0.00 43.67 1.31
2460 3162 6.126768 TGGTCTTACAGATAAGGCAAAGCTAT 60.127 38.462 1.49 0.00 43.67 2.97
2461 3163 5.188948 TGGTCTTACAGATAAGGCAAAGCTA 59.811 40.000 1.49 0.00 43.67 3.32
2553 3255 5.747197 GCAATGCATTCTTGATACAAGAAGG 59.253 40.000 24.54 24.54 39.36 3.46
2561 3263 5.900865 TGTTGAGCAATGCATTCTTGATA 57.099 34.783 9.53 0.00 0.00 2.15
2591 3293 7.044798 AGCACTGCAGTTTTTACCAAAAATAA 58.955 30.769 18.94 0.00 41.85 1.40
2592 3294 6.578023 AGCACTGCAGTTTTTACCAAAAATA 58.422 32.000 18.94 0.00 41.85 1.40
2593 3295 5.427378 AGCACTGCAGTTTTTACCAAAAAT 58.573 33.333 18.94 0.00 41.85 1.82
2627 3329 3.052642 ACAGGCACCATCATATTCCCTTT 60.053 43.478 0.00 0.00 0.00 3.11
2703 3405 0.886490 GGTTGCAGTCAGTCCACTGG 60.886 60.000 6.87 0.00 43.61 4.00
2768 3470 7.550906 AGAAAGAAACCTGACTATGATACTTGC 59.449 37.037 0.00 0.00 0.00 4.01
2809 3511 2.548875 TGGCTGCAATTCAACAACAAC 58.451 42.857 0.50 0.00 0.00 3.32
2810 3512 2.975732 TGGCTGCAATTCAACAACAA 57.024 40.000 0.50 0.00 0.00 2.83
2811 3513 2.364647 TCATGGCTGCAATTCAACAACA 59.635 40.909 0.50 0.00 0.00 3.33
2852 3554 5.394883 CCATCAGCATAAACCTGCAGATTTT 60.395 40.000 12.30 14.07 43.35 1.82
2877 3579 0.034896 GAGTGGACATGGTGGTCGTT 59.965 55.000 0.00 0.00 38.70 3.85
2968 3670 7.775397 ATGAACAAACCAGTCAAAGAAAATG 57.225 32.000 0.00 0.00 0.00 2.32
3041 3743 2.441410 TCCTTCATGTAATTGCGCCAA 58.559 42.857 4.18 0.00 0.00 4.52
3369 4071 6.426328 GCTTACATATGAATTCTGAGGACCTG 59.574 42.308 10.38 0.00 0.00 4.00
3399 4101 7.616103 TGTAAAATTACAAGTTGACAATGCG 57.384 32.000 10.54 0.00 40.43 4.73
3439 4141 0.254178 AGGTGACCATGCTGATGTCC 59.746 55.000 3.63 0.00 0.00 4.02
3463 4165 8.702819 GGACACAATTATTTCCTAGTAGGTAGT 58.297 37.037 16.02 6.11 36.53 2.73
3464 4166 8.925338 AGGACACAATTATTTCCTAGTAGGTAG 58.075 37.037 16.02 0.00 36.67 3.18
3465 4167 8.849543 AGGACACAATTATTTCCTAGTAGGTA 57.150 34.615 16.02 3.52 36.67 3.08
3466 4168 7.750947 AGGACACAATTATTTCCTAGTAGGT 57.249 36.000 16.02 0.00 36.67 3.08
3467 4169 9.462606 AAAAGGACACAATTATTTCCTAGTAGG 57.537 33.333 10.24 10.24 37.51 3.18
3469 4171 9.802039 ACAAAAGGACACAATTATTTCCTAGTA 57.198 29.630 0.00 0.00 37.51 1.82
3470 4172 8.576442 CACAAAAGGACACAATTATTTCCTAGT 58.424 33.333 0.00 0.00 37.51 2.57
3471 4173 7.542130 GCACAAAAGGACACAATTATTTCCTAG 59.458 37.037 0.00 0.00 37.51 3.02
3472 4174 7.232534 AGCACAAAAGGACACAATTATTTCCTA 59.767 33.333 0.00 0.00 37.51 2.94
3473 4175 6.041979 AGCACAAAAGGACACAATTATTTCCT 59.958 34.615 0.00 0.00 40.39 3.36
3474 4176 6.223120 AGCACAAAAGGACACAATTATTTCC 58.777 36.000 0.00 0.00 0.00 3.13
3485 4187 2.907634 TCGTGTAAGCACAAAAGGACA 58.092 42.857 0.00 0.00 45.50 4.02
3500 4204 4.570772 CCACGGAGATAAATGATTTCGTGT 59.429 41.667 20.18 1.80 29.38 4.49
3518 4222 6.618287 TGCTTTAAGATCAATATTCCACGG 57.382 37.500 0.00 0.00 0.00 4.94
3534 4238 4.249638 AGCCCTTGGTATCATGCTTTAA 57.750 40.909 0.00 0.00 0.00 1.52
3602 4307 5.131067 AGACGACCTAGTAGCATGATAACA 58.869 41.667 0.00 0.00 0.00 2.41
3634 4339 5.241403 TCCTATGAAGACCAAAGAGCAAA 57.759 39.130 0.00 0.00 0.00 3.68
3817 4536 7.696992 TGTCCAATTAATTCCTGTTTCTACC 57.303 36.000 0.00 0.00 0.00 3.18
3860 4579 6.038271 AGTTTCTGGACAAAGTTGATGTACAC 59.962 38.462 0.00 0.00 36.72 2.90
3884 4603 6.690530 TGAACATAAAAATCAGAAAGGCCAG 58.309 36.000 5.01 0.00 0.00 4.85
3892 4611 6.591062 GCAAGGCAATGAACATAAAAATCAGA 59.409 34.615 0.00 0.00 0.00 3.27
3955 4674 8.303780 TCCAATGAGGTTAAATTAATCATGCA 57.696 30.769 0.00 0.00 39.02 3.96
3985 4704 4.010349 GCTTTACTCAAACCAGTATGCCT 58.990 43.478 0.00 0.00 31.97 4.75
3991 4710 2.550208 CCCGAGCTTTACTCAAACCAGT 60.550 50.000 0.00 0.00 46.63 4.00
4010 4729 0.251787 ATCCAACCTTTGTCTGCCCC 60.252 55.000 0.00 0.00 0.00 5.80
4013 4732 5.648092 ACTTGTATATCCAACCTTTGTCTGC 59.352 40.000 0.00 0.00 0.00 4.26
4017 4736 9.802039 TTCTAAACTTGTATATCCAACCTTTGT 57.198 29.630 0.00 0.00 0.00 2.83
4033 4752 9.667107 TTGGTCTCCTATATTGTTCTAAACTTG 57.333 33.333 0.00 0.00 0.00 3.16
4034 4753 9.892130 CTTGGTCTCCTATATTGTTCTAAACTT 57.108 33.333 0.00 0.00 0.00 2.66
4092 4811 9.201989 AGAACTGATGTATACAGTATCCTTTGA 57.798 33.333 11.91 0.00 46.01 2.69
4105 4824 6.351881 GGAAACCAGGTGAGAACTGATGTATA 60.352 42.308 0.00 0.00 38.20 1.47
4107 4826 4.262894 GGAAACCAGGTGAGAACTGATGTA 60.263 45.833 0.00 0.00 38.20 2.29
4111 4830 2.408565 AGGAAACCAGGTGAGAACTGA 58.591 47.619 0.00 0.00 38.20 3.41
4115 4834 5.843019 AATCTAAGGAAACCAGGTGAGAA 57.157 39.130 0.00 0.00 0.00 2.87
4129 4848 6.496565 AGGAGATGACAGGACATAATCTAAGG 59.503 42.308 0.00 0.00 0.00 2.69
4140 4859 2.011046 GCAAGCAGGAGATGACAGGAC 61.011 57.143 0.00 0.00 0.00 3.85
4155 4874 7.838771 AGAAAATCTAAATCCAAATGCAAGC 57.161 32.000 0.00 0.00 0.00 4.01
4172 4891 5.185056 TCTTCCAAATCCGGGAAAGAAAATC 59.815 40.000 0.00 0.00 43.48 2.17
4188 4907 1.063266 AGGCCTGGTGTTTCTTCCAAA 60.063 47.619 3.11 0.00 33.06 3.28
4196 4915 0.779997 ATCCTCAAGGCCTGGTGTTT 59.220 50.000 5.69 0.00 34.44 2.83
4199 4918 1.272092 TGAAATCCTCAAGGCCTGGTG 60.272 52.381 5.69 3.41 34.44 4.17
4209 4928 3.229293 TGCACACCATTTGAAATCCTCA 58.771 40.909 0.00 0.00 0.00 3.86
4210 4929 3.940209 TGCACACCATTTGAAATCCTC 57.060 42.857 0.00 0.00 0.00 3.71
4222 4941 6.043127 ACCATATCTAGTCATTATGCACACCA 59.957 38.462 0.00 0.00 0.00 4.17
4231 4950 6.777580 TGAGCTCACACCATATCTAGTCATTA 59.222 38.462 13.74 0.00 0.00 1.90
4243 4962 3.708403 TGAGAAATGAGCTCACACCAT 57.292 42.857 20.97 4.12 37.46 3.55
4293 5012 1.599542 CTAATACAGCAAAGGAGGCGC 59.400 52.381 0.00 0.00 36.08 6.53
4295 5014 3.206964 GTCCTAATACAGCAAAGGAGGC 58.793 50.000 0.00 0.00 38.79 4.70
4370 5089 6.545666 TCAGAACCAAATACAATTGAGTGTGT 59.454 34.615 13.59 0.00 32.75 3.72
4437 5183 9.357161 ACAATAGGTGTGTATTTAAAGAAACCA 57.643 29.630 11.18 0.00 39.72 3.67
4475 5221 2.285668 TCCTGCAGGGAAGGGAGG 60.286 66.667 32.23 4.54 44.47 4.30
4481 5227 1.956869 TCTTGATCTCCTGCAGGGAA 58.043 50.000 32.23 20.50 44.58 3.97
4530 5276 1.620819 GCAGAGTTGACCCTCTTGAGA 59.379 52.381 0.00 0.00 39.81 3.27
4569 5315 6.016693 CCATGTCGACTATGTCTCTGTTATCT 60.017 42.308 17.92 0.00 0.00 1.98
4578 5324 1.389555 TCGCCATGTCGACTATGTCT 58.610 50.000 17.92 0.00 33.02 3.41
4599 5345 3.430453 CCTCAGGTTCTCTCTTCTGACT 58.570 50.000 0.00 0.00 33.36 3.41
4721 5467 1.271871 ACTGATGAACAATTGGGGCGA 60.272 47.619 10.83 0.00 0.00 5.54
4722 5468 1.176527 ACTGATGAACAATTGGGGCG 58.823 50.000 10.83 0.00 0.00 6.13
4778 5524 1.830587 CTAGCAGCACCCCACTGACA 61.831 60.000 0.00 0.00 37.32 3.58
5040 5787 3.563808 TGATTCATTACTTACATGCCCGC 59.436 43.478 0.00 0.00 0.00 6.13
5041 5788 5.947228 ATGATTCATTACTTACATGCCCG 57.053 39.130 0.00 0.00 0.00 6.13
5105 5853 5.091261 ACAGAGCGTATTCTTCCAGAATT 57.909 39.130 4.36 0.00 41.90 2.17
5120 5868 3.301197 CGACATAAACATCGAACAGAGCG 60.301 47.826 0.00 0.00 0.00 5.03
5137 5885 4.882427 AGTACACACTGCTATAGTCGACAT 59.118 41.667 19.50 11.56 37.60 3.06
5171 5919 1.527736 GCGACAAATACACACGTTCCA 59.472 47.619 0.00 0.00 0.00 3.53
5190 5938 8.516694 ATCAAATGGATTCCTGCAGACTTTGC 62.517 42.308 17.39 2.89 42.94 3.68
5195 5943 4.400251 TCAATCAAATGGATTCCTGCAGAC 59.600 41.667 17.39 3.47 44.41 3.51
5222 5971 6.301169 ACTCCTACCTATGAACCAAAGAAG 57.699 41.667 0.00 0.00 0.00 2.85
5223 5972 7.989947 ATACTCCTACCTATGAACCAAAGAA 57.010 36.000 0.00 0.00 0.00 2.52
5224 5973 9.670442 AATATACTCCTACCTATGAACCAAAGA 57.330 33.333 0.00 0.00 0.00 2.52
5225 5974 9.712305 CAATATACTCCTACCTATGAACCAAAG 57.288 37.037 0.00 0.00 0.00 2.77
5226 5975 9.220906 ACAATATACTCCTACCTATGAACCAAA 57.779 33.333 0.00 0.00 0.00 3.28
5227 5976 8.792830 ACAATATACTCCTACCTATGAACCAA 57.207 34.615 0.00 0.00 0.00 3.67
5289 6038 9.487790 CATTTCTACAAATCAAAGGGCTTAAAA 57.512 29.630 0.00 0.00 28.97 1.52
5290 6039 8.093927 CCATTTCTACAAATCAAAGGGCTTAAA 58.906 33.333 0.00 0.00 28.97 1.52
5291 6040 7.453126 TCCATTTCTACAAATCAAAGGGCTTAA 59.547 33.333 0.00 0.00 32.22 1.85
5292 6041 6.951198 TCCATTTCTACAAATCAAAGGGCTTA 59.049 34.615 0.00 0.00 32.22 3.09
5293 6042 5.779771 TCCATTTCTACAAATCAAAGGGCTT 59.220 36.000 0.00 0.00 32.22 4.35
5294 6043 5.332743 TCCATTTCTACAAATCAAAGGGCT 58.667 37.500 0.00 0.00 32.22 5.19
5295 6044 5.659440 TCCATTTCTACAAATCAAAGGGC 57.341 39.130 0.00 0.00 32.22 5.19
5296 6045 8.096414 ACAAATCCATTTCTACAAATCAAAGGG 58.904 33.333 0.00 0.00 33.21 3.95
5334 6083 7.761249 CCTTTAAAACATGAAGGATTGACATCC 59.239 37.037 0.00 0.00 45.45 3.51
5335 6084 8.522830 TCCTTTAAAACATGAAGGATTGACATC 58.477 33.333 8.39 0.00 45.97 3.06
5336 6085 8.421249 TCCTTTAAAACATGAAGGATTGACAT 57.579 30.769 8.39 0.00 45.97 3.06
5337 6086 7.831691 TCCTTTAAAACATGAAGGATTGACA 57.168 32.000 8.39 0.00 45.97 3.58
5378 6127 9.942850 TGTAAGAAAGACATGTCATTTGATAGA 57.057 29.630 27.02 11.44 0.00 1.98
5381 6130 9.458727 AGATGTAAGAAAGACATGTCATTTGAT 57.541 29.630 27.02 13.54 37.65 2.57
5382 6131 8.853077 AGATGTAAGAAAGACATGTCATTTGA 57.147 30.769 27.02 8.55 37.65 2.69
5383 6132 9.903682 AAAGATGTAAGAAAGACATGTCATTTG 57.096 29.630 27.02 0.00 37.65 2.32
5452 6201 7.998964 CCAAAGGGCTCTAAATTTCCTATAGAA 59.001 37.037 0.00 0.00 0.00 2.10
5453 6202 7.128883 ACCAAAGGGCTCTAAATTTCCTATAGA 59.871 37.037 0.00 0.00 37.90 1.98
5454 6203 7.290813 ACCAAAGGGCTCTAAATTTCCTATAG 58.709 38.462 0.00 0.00 37.90 1.31
5455 6204 7.220890 ACCAAAGGGCTCTAAATTTCCTATA 57.779 36.000 0.00 0.00 37.90 1.31
5456 6205 6.092346 ACCAAAGGGCTCTAAATTTCCTAT 57.908 37.500 0.00 0.00 37.90 2.57
5457 6206 5.530176 ACCAAAGGGCTCTAAATTTCCTA 57.470 39.130 0.00 0.00 37.90 2.94
5458 6207 4.404185 ACCAAAGGGCTCTAAATTTCCT 57.596 40.909 0.00 0.00 37.90 3.36
5459 6208 5.483685 AAACCAAAGGGCTCTAAATTTCC 57.516 39.130 0.00 0.00 37.90 3.13
5460 6209 9.803315 CTTATAAACCAAAGGGCTCTAAATTTC 57.197 33.333 0.00 0.00 37.90 2.17
5461 6210 9.541884 TCTTATAAACCAAAGGGCTCTAAATTT 57.458 29.630 0.00 0.00 37.90 1.82
5462 6211 9.541884 TTCTTATAAACCAAAGGGCTCTAAATT 57.458 29.630 0.00 0.00 37.90 1.82
5463 6212 8.967918 GTTCTTATAAACCAAAGGGCTCTAAAT 58.032 33.333 0.00 0.00 37.90 1.40
5464 6213 7.945664 TGTTCTTATAAACCAAAGGGCTCTAAA 59.054 33.333 0.00 0.00 37.90 1.85
5465 6214 7.463431 TGTTCTTATAAACCAAAGGGCTCTAA 58.537 34.615 0.00 0.00 37.90 2.10
5466 6215 7.023171 TGTTCTTATAAACCAAAGGGCTCTA 57.977 36.000 0.00 0.00 37.90 2.43
5467 6216 5.887754 TGTTCTTATAAACCAAAGGGCTCT 58.112 37.500 0.00 0.00 37.90 4.09
5468 6217 5.944007 TCTGTTCTTATAAACCAAAGGGCTC 59.056 40.000 0.00 0.00 37.90 4.70
5469 6218 5.887754 TCTGTTCTTATAAACCAAAGGGCT 58.112 37.500 0.00 0.00 37.90 5.19
5470 6219 6.584185 TTCTGTTCTTATAAACCAAAGGGC 57.416 37.500 0.00 0.00 37.90 5.19
5471 6220 9.462606 ACTATTCTGTTCTTATAAACCAAAGGG 57.537 33.333 0.00 0.00 41.29 3.95
5509 6258 8.432805 TGAAATATGAAGGATAGGAAGAACTCC 58.567 37.037 0.00 0.00 45.81 3.85
5587 6336 9.820725 ACAAAAAGAAAGATGTCATTTGAATCA 57.179 25.926 0.00 0.00 33.89 2.57
5591 6340 9.874205 AGAAACAAAAAGAAAGATGTCATTTGA 57.126 25.926 0.00 0.00 33.89 2.69
5634 6383 9.466497 TTGCTATGAAGACCTTCTTTGATTTAT 57.534 29.630 10.67 0.00 36.73 1.40
5635 6384 8.862325 TTGCTATGAAGACCTTCTTTGATTTA 57.138 30.769 10.67 0.00 36.73 1.40
5636 6385 7.765695 TTGCTATGAAGACCTTCTTTGATTT 57.234 32.000 10.67 0.00 36.73 2.17
5637 6386 7.951347 ATTGCTATGAAGACCTTCTTTGATT 57.049 32.000 10.67 0.00 36.73 2.57
5638 6387 7.951347 AATTGCTATGAAGACCTTCTTTGAT 57.049 32.000 10.67 0.00 36.73 2.57
5639 6388 8.862325 TTAATTGCTATGAAGACCTTCTTTGA 57.138 30.769 10.67 0.00 36.73 2.69
5640 6389 8.950210 TCTTAATTGCTATGAAGACCTTCTTTG 58.050 33.333 4.01 6.93 36.73 2.77
5641 6390 9.692325 ATCTTAATTGCTATGAAGACCTTCTTT 57.308 29.630 9.79 2.24 36.73 2.52
5642 6391 9.118300 CATCTTAATTGCTATGAAGACCTTCTT 57.882 33.333 9.79 7.23 39.87 2.52
5643 6392 8.270744 ACATCTTAATTGCTATGAAGACCTTCT 58.729 33.333 9.79 0.00 34.67 2.85
5644 6393 8.443953 ACATCTTAATTGCTATGAAGACCTTC 57.556 34.615 9.79 2.94 34.67 3.46
5646 6395 9.499479 CATACATCTTAATTGCTATGAAGACCT 57.501 33.333 9.79 2.00 34.67 3.85
5647 6396 9.277783 ACATACATCTTAATTGCTATGAAGACC 57.722 33.333 9.79 0.00 34.67 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.