Multiple sequence alignment - TraesCS2A01G126700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G126700 chr2A 100.000 4845 0 0 591 5435 74792275 74787431 0.000000e+00 8948
1 TraesCS2A01G126700 chr2A 100.000 231 0 0 1 231 74792865 74792635 1.400000e-115 427
2 TraesCS2A01G126700 chr2B 94.727 4343 181 22 613 4918 114654006 114649675 0.000000e+00 6708
3 TraesCS2A01G126700 chr2B 90.868 219 14 1 19 231 114654578 114654360 6.890000e-74 289
4 TraesCS2A01G126700 chr2D 93.777 4371 200 35 591 4909 75005749 75001399 0.000000e+00 6499
5 TraesCS2A01G126700 chr2D 87.826 345 37 2 1760 2101 80248850 80248508 3.050000e-107 399
6 TraesCS2A01G126700 chr2D 89.286 168 8 6 5277 5435 75001390 75001224 9.230000e-48 202
7 TraesCS2A01G126700 chr2D 82.564 195 9 13 1 191 75006024 75005851 1.220000e-31 148
8 TraesCS2A01G126700 chr1A 77.870 1681 274 61 1901 3527 540197710 540196074 0.000000e+00 953
9 TraesCS2A01G126700 chr1A 83.934 305 30 13 3844 4133 540195707 540195407 1.930000e-69 274
10 TraesCS2A01G126700 chr1A 83.969 131 20 1 1727 1857 540197911 540197782 2.060000e-24 124
11 TraesCS2A01G126700 chr1B 77.974 1639 265 65 1933 3530 605443313 605441730 0.000000e+00 939
12 TraesCS2A01G126700 chr1B 92.000 100 7 1 1727 1826 605443546 605443448 7.340000e-29 139
13 TraesCS2A01G126700 chr1D 80.184 651 102 24 1901 2533 444907756 444907115 3.840000e-126 462
14 TraesCS2A01G126700 chr1D 86.260 131 17 1 1727 1857 444907957 444907828 2.040000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G126700 chr2A 74787431 74792865 5434 True 4687.500000 8948 100.000000 1 5435 2 chr2A.!!$R1 5434
1 TraesCS2A01G126700 chr2B 114649675 114654578 4903 True 3498.500000 6708 92.797500 19 4918 2 chr2B.!!$R1 4899
2 TraesCS2A01G126700 chr2D 75001224 75006024 4800 True 2283.000000 6499 88.542333 1 5435 3 chr2D.!!$R2 5434
3 TraesCS2A01G126700 chr1A 540195407 540197911 2504 True 450.333333 953 81.924333 1727 4133 3 chr1A.!!$R1 2406
4 TraesCS2A01G126700 chr1B 605441730 605443546 1816 True 539.000000 939 84.987000 1727 3530 2 chr1B.!!$R1 1803
5 TraesCS2A01G126700 chr1D 444907115 444907957 842 True 301.500000 462 83.222000 1727 2533 2 chr1D.!!$R1 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 891 0.250124 CTGTTTACACAGCCCGACCA 60.250 55.0 0.00 0.0 44.16 4.02 F
2087 2160 0.037734 TCAGGAGCTGACTGGTACGA 59.962 55.0 13.42 0.0 35.39 3.43 F
3459 3590 0.753262 CCATTACTCCGGACTCCCAG 59.247 60.0 0.00 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2367 2457 2.168521 CCGTGTCTCCATGTCCTGTATT 59.831 50.0 0.0 0.0 0.00 1.89 R
4019 4245 0.606401 CACCCAGTTGTACCTGCAGG 60.606 60.0 31.6 31.6 42.17 4.85 R
5145 5382 0.041833 AGCCTCTACAGAGCTTCCCA 59.958 55.0 0.4 0.0 40.75 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 205 1.139947 GTCTCGGCCTACAGCAGTC 59.860 63.158 0.00 0.00 46.50 3.51
225 236 3.709567 GGCTACCGACCTCCTGTT 58.290 61.111 0.00 0.00 0.00 3.16
226 237 1.218316 GGCTACCGACCTCCTGTTG 59.782 63.158 0.00 0.00 0.00 3.33
659 671 2.618241 TCGCTTGATATGGATGTTTGCC 59.382 45.455 0.00 0.00 0.00 4.52
665 677 3.695556 TGATATGGATGTTTGCCTGTGTG 59.304 43.478 0.00 0.00 0.00 3.82
697 712 8.976986 AGAAATTGATACAGATGTTTTCTTGC 57.023 30.769 4.52 0.00 30.37 4.01
735 750 6.811954 TGACGCCATCTCTGTGTATATTTAA 58.188 36.000 0.00 0.00 0.00 1.52
792 807 5.220719 GCATCTGAATTGATTCATGTCGTCA 60.221 40.000 6.85 0.00 44.92 4.35
806 821 1.124297 GTCGTCATACGTGCTTGTGTG 59.876 52.381 0.00 0.44 43.14 3.82
876 891 0.250124 CTGTTTACACAGCCCGACCA 60.250 55.000 0.00 0.00 44.16 4.02
882 897 1.821759 CACAGCCCGACCAAACACA 60.822 57.895 0.00 0.00 0.00 3.72
906 921 1.659622 TAATCTCGAACGCCTCCGCA 61.660 55.000 0.00 0.00 38.22 5.69
943 958 2.390225 AGGAAGTGAGGATCCGCTAT 57.610 50.000 17.00 2.13 40.78 2.97
1089 1104 4.302067 ACATCATCCAGGAGATACACCTT 58.698 43.478 0.00 0.00 35.35 3.50
1106 1121 2.071688 CTTGACGAGGAAGGTCAGTG 57.928 55.000 0.00 0.00 44.47 3.66
1122 1137 1.134461 CAGTGCTTCTCCTCATCCTGG 60.134 57.143 0.00 0.00 0.00 4.45
1155 1170 1.426983 AGCTTCTTCCTCCCTTTTGCT 59.573 47.619 0.00 0.00 0.00 3.91
1215 1230 2.389059 GACCATGACGATGATGACGAG 58.611 52.381 0.00 0.00 34.70 4.18
1257 1272 0.181114 TGGGTATGTGGCAGCTGATC 59.819 55.000 20.43 9.32 0.00 2.92
1263 1278 1.153568 GTGGCAGCTGATCGTAGCA 60.154 57.895 20.43 0.00 46.07 3.49
1277 1292 3.770666 TCGTAGCATTTCTGTCTACTGC 58.229 45.455 0.00 0.00 33.51 4.40
1278 1293 3.192633 TCGTAGCATTTCTGTCTACTGCA 59.807 43.478 0.00 0.00 35.32 4.41
1502 1527 9.325198 CATACTGTTCACAAGGCTAACATATTA 57.675 33.333 1.32 0.00 33.01 0.98
1505 1530 5.583061 TGTTCACAAGGCTAACATATTACGG 59.417 40.000 0.00 0.00 0.00 4.02
1521 1546 4.871993 TTACGGTTGCGTTTGTTCTTAA 57.128 36.364 0.00 0.00 0.00 1.85
1565 1590 3.742882 AGCAATGACGAATGGATATGTCG 59.257 43.478 0.00 0.00 40.56 4.35
1583 1608 9.478019 GATATGTCGTTTACACTGAATCTTTTG 57.522 33.333 0.00 0.00 42.09 2.44
1584 1609 5.507077 TGTCGTTTACACTGAATCTTTTGC 58.493 37.500 0.00 0.00 31.43 3.68
2017 2090 2.158769 TGCATCACTTGTTGTCTCTGGT 60.159 45.455 0.00 0.00 0.00 4.00
2058 2131 5.256474 GTTTCTTTGGAGGATTGGATCTGA 58.744 41.667 0.00 0.00 0.00 3.27
2087 2160 0.037734 TCAGGAGCTGACTGGTACGA 59.962 55.000 13.42 0.00 35.39 3.43
2285 2371 3.694043 TGGGGGCAAAGCTTTATTTTC 57.306 42.857 12.25 2.98 0.00 2.29
2367 2457 4.887071 CCAAGCTTACAATACCTATTGCCA 59.113 41.667 0.00 0.00 45.24 4.92
2463 2553 5.879763 TGGATGGACAGATAAATGTATGGG 58.120 41.667 0.00 0.00 32.25 4.00
2492 2582 0.944311 CACGGACACTTCAGGGAACG 60.944 60.000 0.00 0.00 0.00 3.95
2535 2625 2.092753 GGCTTTGAGGTGAGATGATCCA 60.093 50.000 0.00 0.00 0.00 3.41
2603 2696 5.834169 TGCGGTAATCGATGATTAGTTACA 58.166 37.500 0.00 0.00 42.43 2.41
2721 2826 0.889994 GGAATGCTGACCACAATGCA 59.110 50.000 0.00 0.00 39.83 3.96
2789 2894 4.538490 TGATTTTACCCCTGATGGTACTGT 59.462 41.667 0.00 0.00 40.55 3.55
2808 2913 5.351458 ACTGTGCAATTTCTTCCAGTTTTC 58.649 37.500 0.00 0.00 29.32 2.29
2907 3019 2.158475 TGTCCTGTTTCTGGAATGCCTT 60.158 45.455 0.00 0.00 33.44 4.35
2969 3081 5.234466 AGTTATCAACACAGAGCTCCTTT 57.766 39.130 10.93 0.00 0.00 3.11
3004 3116 7.654923 TCAGATTTCAGAGAAACATATGGATCG 59.345 37.037 7.80 0.00 0.00 3.69
3115 3236 6.460123 GGCAAATAACAGAATGACCTGTATGG 60.460 42.308 0.00 0.00 45.82 2.74
3132 3253 6.751888 CCTGTATGGTGCTTTAACATTTTAGC 59.248 38.462 0.00 0.00 0.00 3.09
3135 3257 5.385509 TGGTGCTTTAACATTTTAGCTCC 57.614 39.130 8.18 8.18 43.84 4.70
3150 3272 9.860898 CATTTTAGCTCCTTTTTACTTGCTTAT 57.139 29.630 0.00 0.00 32.72 1.73
3169 3291 9.950496 TTGCTTATTTTAGAAGTTCAGATCTCT 57.050 29.630 5.50 0.00 0.00 3.10
3314 3437 7.953752 TGTTGTTCGGGGTAAATAATTTTCTT 58.046 30.769 0.00 0.00 0.00 2.52
3459 3590 0.753262 CCATTACTCCGGACTCCCAG 59.247 60.000 0.00 0.00 0.00 4.45
3477 3608 3.411446 CCAGTCAATTGTTAGTGGCTCA 58.589 45.455 5.13 0.00 30.78 4.26
3486 3617 4.737855 TGTTAGTGGCTCAGAGGATAAC 57.262 45.455 0.00 0.00 0.00 1.89
3582 3713 9.627123 TTCCATATTCTTTCTCCGTTCAAATAT 57.373 29.630 0.00 0.00 0.00 1.28
3621 3784 7.651027 AATCTTCTAATGCAAGTTGGCTTAT 57.349 32.000 4.75 0.00 32.87 1.73
3645 3820 1.388547 TGCAACTTGTGGTTCTGACC 58.611 50.000 0.00 0.00 46.71 4.02
3662 3837 5.897050 TCTGACCATTGGTTTGTTTTGTAC 58.103 37.500 10.29 0.00 35.25 2.90
3728 3903 5.235850 TGGTTGTAGCAATTTCTGTAGGA 57.764 39.130 0.00 0.00 0.00 2.94
3783 3963 6.882678 TCTTAGGAAATTTACTTGTACCCTGC 59.117 38.462 8.56 0.00 0.00 4.85
3831 4040 1.267806 GTGCTGGTGGATCTTTGTGTG 59.732 52.381 0.00 0.00 0.00 3.82
3941 4162 6.244654 TGTTTGGTGATATGTTCTTGGATCA 58.755 36.000 0.00 0.00 0.00 2.92
3948 4169 5.766670 TGATATGTTCTTGGATCATTGGAGC 59.233 40.000 0.00 0.00 0.00 4.70
4019 4245 0.107654 CTAGCTGGTGCCCCTGTTAC 60.108 60.000 0.00 0.00 40.80 2.50
4440 4667 8.908786 ACATCTCTATGTTCAAGTGAGAAAAA 57.091 30.769 0.00 0.00 44.07 1.94
4462 4689 2.408271 TCATAGGAGCAACAGCTTGG 57.592 50.000 0.00 0.00 39.10 3.61
4547 4775 1.380785 CTTGCAGCCATCATGGGGT 60.381 57.895 5.62 0.00 38.19 4.95
4578 4807 5.885912 ACTTGGTACTTGTTCTTGACATGTT 59.114 36.000 0.00 0.00 42.16 2.71
4642 4878 1.239296 TGAGGGTAGTCGGTCGTGTG 61.239 60.000 0.00 0.00 0.00 3.82
4643 4879 1.228367 AGGGTAGTCGGTCGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
4799 5036 5.130350 AGTTATATGTTGCGCCCATACTTT 58.870 37.500 16.31 6.54 0.00 2.66
4811 5048 2.947652 CCCATACTTTGTGCTGGATGAG 59.052 50.000 0.00 0.00 0.00 2.90
4824 5061 5.880332 GTGCTGGATGAGGTTGTTAATTCTA 59.120 40.000 0.00 0.00 0.00 2.10
4833 5070 7.001674 TGAGGTTGTTAATTCTACATGGTTGT 58.998 34.615 0.00 0.00 39.98 3.32
4846 5083 8.006298 TCTACATGGTTGTTTTTGTTGATTCT 57.994 30.769 0.00 0.00 37.28 2.40
4912 5149 8.404107 ACGCAACCTATATTGGCTTAAAATAT 57.596 30.769 2.81 0.00 35.09 1.28
4924 5161 8.725405 TTGGCTTAAAATATCATAACAGACGA 57.275 30.769 0.00 0.00 0.00 4.20
4925 5162 8.365399 TGGCTTAAAATATCATAACAGACGAG 57.635 34.615 0.00 0.00 0.00 4.18
4926 5163 7.985184 TGGCTTAAAATATCATAACAGACGAGT 59.015 33.333 0.00 0.00 0.00 4.18
4927 5164 8.827677 GGCTTAAAATATCATAACAGACGAGTT 58.172 33.333 0.00 0.00 35.55 3.01
4928 5165 9.638300 GCTTAAAATATCATAACAGACGAGTTG 57.362 33.333 0.00 0.00 33.07 3.16
4930 5167 7.553881 AAAATATCATAACAGACGAGTTGGG 57.446 36.000 0.00 0.00 33.07 4.12
4931 5168 6.479972 AATATCATAACAGACGAGTTGGGA 57.520 37.500 0.00 0.00 33.07 4.37
4932 5169 6.672266 ATATCATAACAGACGAGTTGGGAT 57.328 37.500 0.00 2.21 33.32 3.85
4933 5170 4.819105 TCATAACAGACGAGTTGGGATT 57.181 40.909 0.00 0.00 33.07 3.01
4934 5171 5.925506 TCATAACAGACGAGTTGGGATTA 57.074 39.130 0.00 0.00 33.07 1.75
4935 5172 5.657474 TCATAACAGACGAGTTGGGATTAC 58.343 41.667 0.00 0.00 33.07 1.89
4936 5173 5.186215 TCATAACAGACGAGTTGGGATTACA 59.814 40.000 0.00 0.00 33.07 2.41
4937 5174 4.345859 AACAGACGAGTTGGGATTACAA 57.654 40.909 0.00 0.00 0.00 2.41
4950 5187 7.451731 TTGGGATTACAACAGAAGGATATCT 57.548 36.000 2.05 0.00 0.00 1.98
4951 5188 8.561536 TTGGGATTACAACAGAAGGATATCTA 57.438 34.615 2.05 0.00 0.00 1.98
4952 5189 8.195165 TGGGATTACAACAGAAGGATATCTAG 57.805 38.462 2.05 0.00 0.00 2.43
4953 5190 7.235606 TGGGATTACAACAGAAGGATATCTAGG 59.764 40.741 2.05 0.00 0.00 3.02
4954 5191 7.235812 GGGATTACAACAGAAGGATATCTAGGT 59.764 40.741 2.05 0.00 0.00 3.08
4955 5192 8.091449 GGATTACAACAGAAGGATATCTAGGTG 58.909 40.741 2.05 0.55 0.00 4.00
4956 5193 5.283457 ACAACAGAAGGATATCTAGGTGC 57.717 43.478 2.05 0.00 0.00 5.01
4957 5194 4.965532 ACAACAGAAGGATATCTAGGTGCT 59.034 41.667 2.05 0.00 0.00 4.40
4958 5195 5.426833 ACAACAGAAGGATATCTAGGTGCTT 59.573 40.000 2.05 0.00 0.00 3.91
4959 5196 6.611642 ACAACAGAAGGATATCTAGGTGCTTA 59.388 38.462 2.05 0.00 0.00 3.09
4960 5197 6.909550 ACAGAAGGATATCTAGGTGCTTAG 57.090 41.667 2.05 0.00 0.00 2.18
4961 5198 6.615617 ACAGAAGGATATCTAGGTGCTTAGA 58.384 40.000 2.05 0.00 34.38 2.10
4962 5199 7.069986 ACAGAAGGATATCTAGGTGCTTAGAA 58.930 38.462 2.05 0.00 33.64 2.10
4963 5200 7.565398 ACAGAAGGATATCTAGGTGCTTAGAAA 59.435 37.037 2.05 0.00 33.64 2.52
4964 5201 8.424918 CAGAAGGATATCTAGGTGCTTAGAAAA 58.575 37.037 2.05 0.00 33.64 2.29
4965 5202 8.993424 AGAAGGATATCTAGGTGCTTAGAAAAA 58.007 33.333 2.05 0.00 33.64 1.94
4966 5203 9.785982 GAAGGATATCTAGGTGCTTAGAAAAAT 57.214 33.333 2.05 0.00 33.64 1.82
4973 5210 8.561738 TCTAGGTGCTTAGAAAAATAAACTGG 57.438 34.615 0.00 0.00 0.00 4.00
4974 5211 8.380099 TCTAGGTGCTTAGAAAAATAAACTGGA 58.620 33.333 0.00 0.00 0.00 3.86
4975 5212 9.178758 CTAGGTGCTTAGAAAAATAAACTGGAT 57.821 33.333 0.00 0.00 0.00 3.41
4976 5213 8.422577 AGGTGCTTAGAAAAATAAACTGGATT 57.577 30.769 0.00 0.00 0.00 3.01
4977 5214 8.870116 AGGTGCTTAGAAAAATAAACTGGATTT 58.130 29.630 0.00 0.00 0.00 2.17
4978 5215 9.489084 GGTGCTTAGAAAAATAAACTGGATTTT 57.511 29.630 0.00 0.00 37.96 1.82
5012 5249 8.956426 CACCAGTGCCTATTTTTATAAGAAAGA 58.044 33.333 0.00 0.00 0.00 2.52
5013 5250 8.957466 ACCAGTGCCTATTTTTATAAGAAAGAC 58.043 33.333 0.00 0.00 0.00 3.01
5014 5251 8.122952 CCAGTGCCTATTTTTATAAGAAAGACG 58.877 37.037 0.00 0.00 0.00 4.18
5015 5252 8.665685 CAGTGCCTATTTTTATAAGAAAGACGT 58.334 33.333 0.00 0.00 0.00 4.34
5016 5253 8.880750 AGTGCCTATTTTTATAAGAAAGACGTC 58.119 33.333 7.70 7.70 0.00 4.34
5017 5254 8.880750 GTGCCTATTTTTATAAGAAAGACGTCT 58.119 33.333 13.58 13.58 0.00 4.18
5033 5270 9.235537 GAAAGACGTCTAATTAAGTGTCTATCC 57.764 37.037 20.39 0.00 39.47 2.59
5034 5271 8.522542 AAGACGTCTAATTAAGTGTCTATCCT 57.477 34.615 20.39 0.00 39.47 3.24
5035 5272 7.932335 AGACGTCTAATTAAGTGTCTATCCTG 58.068 38.462 18.46 0.00 38.99 3.86
5036 5273 7.774157 AGACGTCTAATTAAGTGTCTATCCTGA 59.226 37.037 18.46 0.00 38.99 3.86
5037 5274 8.466617 ACGTCTAATTAAGTGTCTATCCTGAT 57.533 34.615 0.00 0.00 0.00 2.90
5038 5275 8.353684 ACGTCTAATTAAGTGTCTATCCTGATG 58.646 37.037 0.00 0.00 0.00 3.07
5039 5276 8.353684 CGTCTAATTAAGTGTCTATCCTGATGT 58.646 37.037 0.00 0.00 0.00 3.06
5045 5282 9.838339 ATTAAGTGTCTATCCTGATGTTTAAGG 57.162 33.333 0.00 0.00 34.65 2.69
5046 5283 7.496346 AAGTGTCTATCCTGATGTTTAAGGA 57.504 36.000 0.00 0.00 46.46 3.36
5047 5284 7.496346 AGTGTCTATCCTGATGTTTAAGGAA 57.504 36.000 0.00 0.00 45.56 3.36
5048 5285 7.918076 AGTGTCTATCCTGATGTTTAAGGAAA 58.082 34.615 0.00 0.00 45.56 3.13
5049 5286 8.043710 AGTGTCTATCCTGATGTTTAAGGAAAG 58.956 37.037 0.00 0.00 45.56 2.62
5050 5287 7.824779 GTGTCTATCCTGATGTTTAAGGAAAGT 59.175 37.037 0.00 0.00 45.56 2.66
5051 5288 8.383175 TGTCTATCCTGATGTTTAAGGAAAGTT 58.617 33.333 0.00 0.00 45.56 2.66
5052 5289 9.232473 GTCTATCCTGATGTTTAAGGAAAGTTT 57.768 33.333 0.00 0.00 45.56 2.66
5053 5290 9.231297 TCTATCCTGATGTTTAAGGAAAGTTTG 57.769 33.333 0.00 0.00 45.56 2.93
5054 5291 6.648879 TCCTGATGTTTAAGGAAAGTTTGG 57.351 37.500 0.00 0.00 39.68 3.28
5055 5292 6.133356 TCCTGATGTTTAAGGAAAGTTTGGT 58.867 36.000 0.00 0.00 39.68 3.67
5056 5293 6.609616 TCCTGATGTTTAAGGAAAGTTTGGTT 59.390 34.615 0.00 0.00 39.68 3.67
5057 5294 7.125053 TCCTGATGTTTAAGGAAAGTTTGGTTT 59.875 33.333 0.00 0.00 39.68 3.27
5058 5295 8.417884 CCTGATGTTTAAGGAAAGTTTGGTTTA 58.582 33.333 0.00 0.00 35.40 2.01
5059 5296 9.981114 CTGATGTTTAAGGAAAGTTTGGTTTAT 57.019 29.630 0.00 0.00 0.00 1.40
5066 5303 7.669089 AAGGAAAGTTTGGTTTATTTCTCCA 57.331 32.000 0.00 0.00 33.25 3.86
5067 5304 7.669089 AGGAAAGTTTGGTTTATTTCTCCAA 57.331 32.000 0.00 0.00 39.12 3.53
5068 5305 7.726216 AGGAAAGTTTGGTTTATTTCTCCAAG 58.274 34.615 0.00 0.00 41.34 3.61
5069 5306 6.423905 GGAAAGTTTGGTTTATTTCTCCAAGC 59.576 38.462 0.00 0.00 41.34 4.01
5070 5307 6.478512 AAGTTTGGTTTATTTCTCCAAGCA 57.521 33.333 11.24 0.00 42.19 3.91
5071 5308 5.842907 AGTTTGGTTTATTTCTCCAAGCAC 58.157 37.500 11.24 2.53 42.19 4.40
5072 5309 4.864704 TTGGTTTATTTCTCCAAGCACC 57.135 40.909 0.00 0.00 36.48 5.01
5073 5310 3.161866 TGGTTTATTTCTCCAAGCACCC 58.838 45.455 0.00 0.00 0.00 4.61
5074 5311 3.181423 TGGTTTATTTCTCCAAGCACCCT 60.181 43.478 0.00 0.00 0.00 4.34
5075 5312 3.193479 GGTTTATTTCTCCAAGCACCCTG 59.807 47.826 0.00 0.00 0.00 4.45
5076 5313 2.128771 TATTTCTCCAAGCACCCTGC 57.871 50.000 0.00 0.00 45.46 4.85
5087 5324 0.527565 GCACCCTGCATTGTACAAGG 59.472 55.000 15.70 15.70 44.26 3.61
5088 5325 0.527565 CACCCTGCATTGTACAAGGC 59.472 55.000 32.34 32.34 46.98 4.35
5089 5326 0.611896 ACCCTGCATTGTACAAGGCC 60.612 55.000 34.56 20.76 46.35 5.19
5090 5327 0.323725 CCCTGCATTGTACAAGGCCT 60.324 55.000 34.56 0.00 46.35 5.19
5091 5328 1.064758 CCCTGCATTGTACAAGGCCTA 60.065 52.381 34.56 20.55 46.35 3.93
5092 5329 2.620367 CCCTGCATTGTACAAGGCCTAA 60.620 50.000 34.56 19.91 46.35 2.69
5093 5330 2.423538 CCTGCATTGTACAAGGCCTAAC 59.576 50.000 34.56 13.85 46.35 2.34
5094 5331 3.081061 CTGCATTGTACAAGGCCTAACA 58.919 45.455 34.56 19.26 46.35 2.41
5095 5332 3.081061 TGCATTGTACAAGGCCTAACAG 58.919 45.455 34.56 9.28 46.35 3.16
5096 5333 2.423538 GCATTGTACAAGGCCTAACAGG 59.576 50.000 29.85 8.66 41.71 4.00
5109 5346 3.545703 CCTAACAGGCTAACATCCTTGG 58.454 50.000 0.00 0.00 0.00 3.61
5110 5347 3.199946 CCTAACAGGCTAACATCCTTGGA 59.800 47.826 0.00 0.00 0.00 3.53
5111 5348 3.356529 AACAGGCTAACATCCTTGGAG 57.643 47.619 0.00 0.00 0.00 3.86
5112 5349 2.269940 ACAGGCTAACATCCTTGGAGT 58.730 47.619 0.00 0.00 0.00 3.85
5113 5350 2.026822 ACAGGCTAACATCCTTGGAGTG 60.027 50.000 0.00 0.00 0.00 3.51
5114 5351 1.561542 AGGCTAACATCCTTGGAGTGG 59.438 52.381 0.00 0.00 0.00 4.00
5115 5352 1.282157 GGCTAACATCCTTGGAGTGGT 59.718 52.381 0.00 0.00 0.00 4.16
5116 5353 2.504175 GGCTAACATCCTTGGAGTGGTA 59.496 50.000 0.00 0.00 0.00 3.25
5117 5354 3.432326 GGCTAACATCCTTGGAGTGGTAG 60.432 52.174 14.31 14.31 36.47 3.18
5118 5355 3.197983 GCTAACATCCTTGGAGTGGTAGT 59.802 47.826 17.26 1.51 35.95 2.73
5119 5356 3.703001 AACATCCTTGGAGTGGTAGTG 57.297 47.619 0.00 0.00 0.00 2.74
5120 5357 1.909302 ACATCCTTGGAGTGGTAGTGG 59.091 52.381 0.00 0.00 0.00 4.00
5121 5358 1.210478 CATCCTTGGAGTGGTAGTGGG 59.790 57.143 0.00 0.00 0.00 4.61
5122 5359 0.490017 TCCTTGGAGTGGTAGTGGGA 59.510 55.000 0.00 0.00 0.00 4.37
5123 5360 1.132657 TCCTTGGAGTGGTAGTGGGAA 60.133 52.381 0.00 0.00 0.00 3.97
5124 5361 1.003233 CCTTGGAGTGGTAGTGGGAAC 59.997 57.143 0.00 0.00 0.00 3.62
5125 5362 1.978580 CTTGGAGTGGTAGTGGGAACT 59.021 52.381 0.00 0.00 0.00 3.01
5126 5363 3.170717 CTTGGAGTGGTAGTGGGAACTA 58.829 50.000 0.00 0.00 0.00 2.24
5127 5364 3.263369 TGGAGTGGTAGTGGGAACTAA 57.737 47.619 0.00 0.00 0.00 2.24
5128 5365 2.901839 TGGAGTGGTAGTGGGAACTAAC 59.098 50.000 0.00 0.00 0.00 2.34
5129 5366 2.901839 GGAGTGGTAGTGGGAACTAACA 59.098 50.000 0.00 0.00 37.55 2.41
5132 5369 1.980036 TGGTAGTGGGAACTAACACCC 59.020 52.381 0.00 0.00 45.74 4.61
5133 5370 2.263545 GGTAGTGGGAACTAACACCCT 58.736 52.381 0.00 0.00 45.74 4.34
5134 5371 2.641321 GGTAGTGGGAACTAACACCCTT 59.359 50.000 0.00 0.00 45.74 3.95
5135 5372 2.951229 AGTGGGAACTAACACCCTTG 57.049 50.000 0.00 0.00 45.74 3.61
5136 5373 1.423921 AGTGGGAACTAACACCCTTGG 59.576 52.381 0.00 0.00 45.74 3.61
5137 5374 1.422402 GTGGGAACTAACACCCTTGGA 59.578 52.381 0.00 0.00 45.74 3.53
5138 5375 1.702957 TGGGAACTAACACCCTTGGAG 59.297 52.381 0.00 0.00 45.74 3.86
5139 5376 1.703513 GGGAACTAACACCCTTGGAGT 59.296 52.381 0.00 0.00 42.56 3.85
5140 5377 2.552373 GGGAACTAACACCCTTGGAGTG 60.552 54.545 0.00 6.70 42.56 3.51
5141 5378 2.370849 GGAACTAACACCCTTGGAGTGA 59.629 50.000 12.79 0.00 38.63 3.41
5142 5379 3.009143 GGAACTAACACCCTTGGAGTGAT 59.991 47.826 12.79 6.02 38.63 3.06
5143 5380 4.224370 GGAACTAACACCCTTGGAGTGATA 59.776 45.833 12.79 6.66 38.63 2.15
5144 5381 5.420409 GAACTAACACCCTTGGAGTGATAG 58.580 45.833 16.22 16.22 42.87 2.08
5145 5382 4.426704 ACTAACACCCTTGGAGTGATAGT 58.573 43.478 17.02 17.02 44.33 2.12
5146 5383 3.703001 AACACCCTTGGAGTGATAGTG 57.297 47.619 12.79 0.00 38.63 2.74
5147 5384 1.909302 ACACCCTTGGAGTGATAGTGG 59.091 52.381 12.79 0.00 38.63 4.00
5148 5385 1.210478 CACCCTTGGAGTGATAGTGGG 59.790 57.143 0.00 0.00 37.42 4.61
5149 5386 1.080498 ACCCTTGGAGTGATAGTGGGA 59.920 52.381 0.00 0.00 37.06 4.37
5150 5387 2.196595 CCCTTGGAGTGATAGTGGGAA 58.803 52.381 0.00 0.00 35.40 3.97
5151 5388 2.171448 CCCTTGGAGTGATAGTGGGAAG 59.829 54.545 0.00 0.00 35.40 3.46
5152 5389 2.420687 CCTTGGAGTGATAGTGGGAAGC 60.421 54.545 0.00 0.00 0.00 3.86
5153 5390 2.254152 TGGAGTGATAGTGGGAAGCT 57.746 50.000 0.00 0.00 0.00 3.74
5154 5391 2.111384 TGGAGTGATAGTGGGAAGCTC 58.889 52.381 0.00 0.00 0.00 4.09
5155 5392 2.292521 TGGAGTGATAGTGGGAAGCTCT 60.293 50.000 0.00 0.00 0.00 4.09
5156 5393 2.102252 GGAGTGATAGTGGGAAGCTCTG 59.898 54.545 0.00 0.00 0.00 3.35
5157 5394 2.763448 GAGTGATAGTGGGAAGCTCTGT 59.237 50.000 0.00 0.00 0.00 3.41
5158 5395 3.954904 GAGTGATAGTGGGAAGCTCTGTA 59.045 47.826 0.00 0.00 0.00 2.74
5159 5396 3.957497 AGTGATAGTGGGAAGCTCTGTAG 59.043 47.826 0.00 0.00 0.00 2.74
5160 5397 3.954904 GTGATAGTGGGAAGCTCTGTAGA 59.045 47.826 0.00 0.00 0.00 2.59
5161 5398 4.037446 GTGATAGTGGGAAGCTCTGTAGAG 59.963 50.000 4.53 4.53 44.75 2.43
5162 5399 1.859302 AGTGGGAAGCTCTGTAGAGG 58.141 55.000 10.66 0.00 42.29 3.69
5163 5400 0.176910 GTGGGAAGCTCTGTAGAGGC 59.823 60.000 10.66 3.68 42.29 4.70
5164 5401 0.041833 TGGGAAGCTCTGTAGAGGCT 59.958 55.000 10.66 5.71 42.29 4.58
5165 5402 1.288037 TGGGAAGCTCTGTAGAGGCTA 59.712 52.381 10.66 0.00 42.29 3.93
5166 5403 2.292257 TGGGAAGCTCTGTAGAGGCTAA 60.292 50.000 10.66 0.00 42.29 3.09
5167 5404 2.101750 GGGAAGCTCTGTAGAGGCTAAC 59.898 54.545 10.66 0.00 42.29 2.34
5168 5405 2.761208 GGAAGCTCTGTAGAGGCTAACA 59.239 50.000 10.66 2.55 42.29 2.41
5169 5406 3.181480 GGAAGCTCTGTAGAGGCTAACAG 60.181 52.174 18.75 18.75 43.63 3.16
5170 5407 2.383855 AGCTCTGTAGAGGCTAACAGG 58.616 52.381 22.42 16.21 42.72 4.00
5171 5408 1.202475 GCTCTGTAGAGGCTAACAGGC 60.202 57.143 22.42 20.15 42.72 4.85
5179 5416 3.170360 GGCTAACAGGCTAACACCC 57.830 57.895 0.00 0.00 37.85 4.61
5180 5417 0.618981 GGCTAACAGGCTAACACCCT 59.381 55.000 0.00 0.00 37.85 4.34
5181 5418 1.004394 GGCTAACAGGCTAACACCCTT 59.996 52.381 0.00 0.00 37.85 3.95
5182 5419 2.084546 GCTAACAGGCTAACACCCTTG 58.915 52.381 0.00 0.00 0.00 3.61
5183 5420 2.711542 CTAACAGGCTAACACCCTTGG 58.288 52.381 0.00 0.00 0.00 3.61
5184 5421 1.145571 AACAGGCTAACACCCTTGGA 58.854 50.000 0.00 0.00 0.00 3.53
5185 5422 0.693049 ACAGGCTAACACCCTTGGAG 59.307 55.000 0.00 0.00 0.00 3.86
5186 5423 0.693049 CAGGCTAACACCCTTGGAGT 59.307 55.000 0.00 0.00 0.00 3.85
5187 5424 0.693049 AGGCTAACACCCTTGGAGTG 59.307 55.000 0.00 6.70 41.15 3.51
5188 5425 0.322546 GGCTAACACCCTTGGAGTGG 60.323 60.000 11.13 0.00 39.63 4.00
5189 5426 0.400594 GCTAACACCCTTGGAGTGGT 59.599 55.000 11.13 8.06 39.63 4.16
5190 5427 1.626825 GCTAACACCCTTGGAGTGGTA 59.373 52.381 11.13 8.62 39.63 3.25
5191 5428 3.611766 CTAACACCCTTGGAGTGGTAG 57.388 52.381 14.37 14.37 46.07 3.18
5192 5429 1.815757 AACACCCTTGGAGTGGTAGT 58.184 50.000 11.13 0.00 39.63 2.73
5193 5430 1.056660 ACACCCTTGGAGTGGTAGTG 58.943 55.000 11.13 0.00 39.63 2.74
5194 5431 0.324943 CACCCTTGGAGTGGTAGTGG 59.675 60.000 0.00 0.00 32.32 4.00
5195 5432 0.840722 ACCCTTGGAGTGGTAGTGGG 60.841 60.000 0.00 0.00 39.06 4.61
5196 5433 0.546747 CCCTTGGAGTGGTAGTGGGA 60.547 60.000 0.00 0.00 35.40 4.37
5197 5434 1.358152 CCTTGGAGTGGTAGTGGGAA 58.642 55.000 0.00 0.00 0.00 3.97
5198 5435 1.279271 CCTTGGAGTGGTAGTGGGAAG 59.721 57.143 0.00 0.00 0.00 3.46
5199 5436 0.690762 TTGGAGTGGTAGTGGGAAGC 59.309 55.000 0.00 0.00 0.00 3.86
5200 5437 1.198759 TGGAGTGGTAGTGGGAAGCC 61.199 60.000 0.00 0.00 0.00 4.35
5201 5438 1.198759 GGAGTGGTAGTGGGAAGCCA 61.199 60.000 0.00 0.00 0.00 4.75
5202 5439 0.912486 GAGTGGTAGTGGGAAGCCAT 59.088 55.000 0.00 0.00 33.20 4.40
5203 5440 0.620556 AGTGGTAGTGGGAAGCCATG 59.379 55.000 0.00 0.00 33.20 3.66
5204 5441 0.328258 GTGGTAGTGGGAAGCCATGT 59.672 55.000 0.00 0.00 33.20 3.21
5205 5442 1.557832 GTGGTAGTGGGAAGCCATGTA 59.442 52.381 0.00 0.00 33.20 2.29
5206 5443 1.837439 TGGTAGTGGGAAGCCATGTAG 59.163 52.381 0.00 0.00 0.00 2.74
5207 5444 2.116238 GGTAGTGGGAAGCCATGTAGA 58.884 52.381 0.00 0.00 0.00 2.59
5208 5445 2.103263 GGTAGTGGGAAGCCATGTAGAG 59.897 54.545 0.00 0.00 0.00 2.43
5209 5446 1.207791 AGTGGGAAGCCATGTAGAGG 58.792 55.000 0.00 0.00 0.00 3.69
5223 5460 7.020914 CCATGTAGAGGCTAAAACAGAAATC 57.979 40.000 0.00 0.00 0.00 2.17
5224 5461 6.238211 CCATGTAGAGGCTAAAACAGAAATCG 60.238 42.308 0.00 0.00 0.00 3.34
5225 5462 6.032956 TGTAGAGGCTAAAACAGAAATCGA 57.967 37.500 0.00 0.00 0.00 3.59
5226 5463 6.460781 TGTAGAGGCTAAAACAGAAATCGAA 58.539 36.000 0.00 0.00 0.00 3.71
5227 5464 5.864628 AGAGGCTAAAACAGAAATCGAAC 57.135 39.130 0.00 0.00 0.00 3.95
5228 5465 5.552178 AGAGGCTAAAACAGAAATCGAACT 58.448 37.500 0.00 0.00 0.00 3.01
5229 5466 6.698380 AGAGGCTAAAACAGAAATCGAACTA 58.302 36.000 0.00 0.00 0.00 2.24
5230 5467 7.159372 AGAGGCTAAAACAGAAATCGAACTAA 58.841 34.615 0.00 0.00 0.00 2.24
5231 5468 7.332182 AGAGGCTAAAACAGAAATCGAACTAAG 59.668 37.037 0.00 0.00 0.00 2.18
5232 5469 6.022208 GGCTAAAACAGAAATCGAACTAAGC 58.978 40.000 0.00 0.00 0.00 3.09
5233 5470 6.128254 GGCTAAAACAGAAATCGAACTAAGCT 60.128 38.462 0.00 0.00 0.00 3.74
5234 5471 7.298854 GCTAAAACAGAAATCGAACTAAGCTT 58.701 34.615 3.48 3.48 0.00 3.74
5235 5472 8.440833 GCTAAAACAGAAATCGAACTAAGCTTA 58.559 33.333 5.94 5.94 0.00 3.09
5236 5473 9.742552 CTAAAACAGAAATCGAACTAAGCTTAC 57.257 33.333 0.86 0.00 0.00 2.34
5237 5474 7.724305 AAACAGAAATCGAACTAAGCTTACA 57.276 32.000 0.86 0.00 0.00 2.41
5238 5475 6.707599 ACAGAAATCGAACTAAGCTTACAC 57.292 37.500 0.86 0.00 0.00 2.90
5239 5476 5.638234 ACAGAAATCGAACTAAGCTTACACC 59.362 40.000 0.86 0.00 0.00 4.16
5240 5477 5.869888 CAGAAATCGAACTAAGCTTACACCT 59.130 40.000 0.86 0.00 0.00 4.00
5241 5478 6.369065 CAGAAATCGAACTAAGCTTACACCTT 59.631 38.462 0.86 0.00 0.00 3.50
5242 5479 6.369065 AGAAATCGAACTAAGCTTACACCTTG 59.631 38.462 0.86 0.00 0.00 3.61
5243 5480 3.323243 TCGAACTAAGCTTACACCTTGC 58.677 45.455 0.86 0.00 0.00 4.01
5244 5481 2.415512 CGAACTAAGCTTACACCTTGCC 59.584 50.000 0.86 0.00 0.00 4.52
5245 5482 3.408634 GAACTAAGCTTACACCTTGCCA 58.591 45.455 0.86 0.00 0.00 4.92
5246 5483 3.059352 ACTAAGCTTACACCTTGCCAG 57.941 47.619 0.86 0.00 0.00 4.85
5248 5485 0.251341 AAGCTTACACCTTGCCAGGG 60.251 55.000 8.98 0.00 46.01 4.45
5249 5486 1.133809 AGCTTACACCTTGCCAGGGA 61.134 55.000 8.98 0.00 46.01 4.20
5250 5487 0.960861 GCTTACACCTTGCCAGGGAC 60.961 60.000 8.98 0.00 46.01 4.46
5251 5488 0.693049 CTTACACCTTGCCAGGGACT 59.307 55.000 8.98 0.00 46.01 3.85
5252 5489 1.073923 CTTACACCTTGCCAGGGACTT 59.926 52.381 8.98 0.00 46.01 3.01
5253 5490 0.400213 TACACCTTGCCAGGGACTTG 59.600 55.000 8.98 0.00 46.01 3.16
5259 5496 2.743928 GCCAGGGACTTGCGACAG 60.744 66.667 0.00 0.00 37.36 3.51
5260 5497 2.046892 CCAGGGACTTGCGACAGG 60.047 66.667 0.00 0.00 34.60 4.00
5261 5498 2.046892 CAGGGACTTGCGACAGGG 60.047 66.667 0.00 0.00 34.60 4.45
5262 5499 2.203788 AGGGACTTGCGACAGGGA 60.204 61.111 0.00 0.00 27.25 4.20
5263 5500 2.047179 GGGACTTGCGACAGGGAC 60.047 66.667 0.00 0.00 0.00 4.46
5264 5501 2.584391 GGGACTTGCGACAGGGACT 61.584 63.158 0.00 0.00 43.88 3.85
5265 5502 1.079750 GGACTTGCGACAGGGACTC 60.080 63.158 0.00 0.00 34.60 3.36
5266 5503 1.536943 GGACTTGCGACAGGGACTCT 61.537 60.000 0.00 0.00 34.60 3.24
5299 5536 4.201980 GGAAATGGCGGTTACCACTATTTC 60.202 45.833 23.89 23.89 44.17 2.17
5300 5537 3.637911 ATGGCGGTTACCACTATTTCA 57.362 42.857 1.13 0.00 44.17 2.69
5334 5577 6.710295 AGTGTTACTACTGAAATTCATGCACA 59.290 34.615 0.00 0.00 0.00 4.57
5337 5580 7.443879 TGTTACTACTGAAATTCATGCACAAGA 59.556 33.333 0.00 0.00 0.00 3.02
5352 5595 6.545504 TGCACAAGAGAGAATTTTCACTAC 57.454 37.500 0.00 0.00 0.00 2.73
5364 5608 3.847037 TTTCACTACGAAAACTCGTGC 57.153 42.857 10.26 0.00 46.53 5.34
5366 5610 1.338973 TCACTACGAAAACTCGTGCCT 59.661 47.619 10.26 0.00 46.53 4.75
5379 5623 4.069304 ACTCGTGCCTTACAATAGCAAAA 58.931 39.130 0.00 0.00 38.45 2.44
5382 5626 4.391830 TCGTGCCTTACAATAGCAAAAGAG 59.608 41.667 0.00 0.00 38.45 2.85
5427 5672 2.730090 CGCAGATCAAACATGGCACTTC 60.730 50.000 0.00 0.00 0.00 3.01
5428 5673 2.229543 GCAGATCAAACATGGCACTTCA 59.770 45.455 0.00 0.00 0.00 3.02
5431 5676 4.216902 CAGATCAAACATGGCACTTCAAGA 59.783 41.667 0.00 0.00 0.00 3.02
5433 5678 4.305989 TCAAACATGGCACTTCAAGAAC 57.694 40.909 0.00 0.00 0.00 3.01
5434 5679 3.698539 TCAAACATGGCACTTCAAGAACA 59.301 39.130 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 76 2.106683 GGTGGCCGGAATCAAGACG 61.107 63.158 5.05 0.00 0.00 4.18
67 78 2.267642 CGGTGGCCGGAATCAAGA 59.732 61.111 5.05 0.00 44.15 3.02
97 108 4.779733 GGAGGTGCGGGGAGAGGA 62.780 72.222 0.00 0.00 0.00 3.71
163 174 4.452733 GAGACGTTGCGGGGAGGG 62.453 72.222 0.00 0.00 0.00 4.30
692 707 4.377943 CGTCAATTCATAAACACCGCAAGA 60.378 41.667 0.00 0.00 43.02 3.02
697 712 2.160615 TGGCGTCAATTCATAAACACCG 59.839 45.455 0.00 0.00 0.00 4.94
735 750 2.418197 GCCACTCATCAGCAATTGCATT 60.418 45.455 30.89 13.02 45.16 3.56
772 787 6.019559 ACGTATGACGACATGAATCAATTCAG 60.020 38.462 10.69 6.23 46.11 3.02
792 807 2.135139 CTCACACACACAAGCACGTAT 58.865 47.619 0.00 0.00 0.00 3.06
806 821 3.059325 GCTGTTCAACATCTCACTCACAC 60.059 47.826 0.00 0.00 0.00 3.82
872 887 5.227908 TCGAGATTAAGAGTGTGTTTGGTC 58.772 41.667 0.00 0.00 0.00 4.02
876 891 4.150098 GCGTTCGAGATTAAGAGTGTGTTT 59.850 41.667 0.00 0.00 0.00 2.83
882 897 2.099427 GGAGGCGTTCGAGATTAAGAGT 59.901 50.000 0.00 0.00 0.00 3.24
911 926 1.126846 CACTTCCTAACGCGCTTCTTG 59.873 52.381 5.73 0.00 0.00 3.02
912 927 1.000506 TCACTTCCTAACGCGCTTCTT 59.999 47.619 5.73 0.00 0.00 2.52
922 937 2.160721 AGCGGATCCTCACTTCCTAA 57.839 50.000 10.75 0.00 0.00 2.69
943 958 2.342279 CGTGGCCGGAGAGAACAA 59.658 61.111 5.05 0.00 0.00 2.83
996 1011 0.678395 CGCCTGAGATACTCATGGCT 59.322 55.000 24.41 0.00 44.56 4.75
1089 1104 0.827925 AGCACTGACCTTCCTCGTCA 60.828 55.000 0.00 0.00 37.91 4.35
1106 1121 1.344114 CTAGCCAGGATGAGGAGAAGC 59.656 57.143 0.00 0.00 39.69 3.86
1137 1152 3.553715 GCAAAGCAAAAGGGAGGAAGAAG 60.554 47.826 0.00 0.00 0.00 2.85
1138 1153 2.365293 GCAAAGCAAAAGGGAGGAAGAA 59.635 45.455 0.00 0.00 0.00 2.52
1215 1230 1.825474 TCTTGGTCTTCCTCATCGTCC 59.175 52.381 0.00 0.00 34.23 4.79
1257 1272 3.511699 TGCAGTAGACAGAAATGCTACG 58.488 45.455 0.00 0.00 39.47 3.51
1277 1292 3.409026 AACCAGTCCTAGCAAGTTCTG 57.591 47.619 0.00 0.00 0.00 3.02
1278 1293 4.532521 ACATAACCAGTCCTAGCAAGTTCT 59.467 41.667 0.00 0.00 0.00 3.01
1431 1456 2.431782 TGAATAAGGTACTACGGTGGGC 59.568 50.000 0.00 0.00 38.49 5.36
1505 1530 7.806014 TCTTATTCCATTAAGAACAAACGCAAC 59.194 33.333 0.00 0.00 35.73 4.17
1565 1590 6.972328 TCACTTGCAAAAGATTCAGTGTAAAC 59.028 34.615 0.00 0.00 0.00 2.01
1583 1608 0.675837 TCATGGCTGAGCTCACTTGC 60.676 55.000 13.74 15.12 0.00 4.01
1584 1609 1.085091 GTCATGGCTGAGCTCACTTG 58.915 55.000 13.74 12.49 30.18 3.16
1643 1669 4.819105 AACTAGTAGCATAGCACCAACA 57.181 40.909 0.00 0.00 0.00 3.33
2017 2090 4.597507 AGAAACCCTCTGTCATCTTTACCA 59.402 41.667 0.00 0.00 31.12 3.25
2058 2131 3.073650 AGTCAGCTCCTGAAAATCCTGTT 59.926 43.478 0.00 0.00 42.46 3.16
2087 2160 7.996066 TCACTAGACTACTGAAGATGAGCTAAT 59.004 37.037 0.00 0.00 0.00 1.73
2266 2352 2.571653 AGGAAAATAAAGCTTTGCCCCC 59.428 45.455 22.02 14.77 34.71 5.40
2285 2371 6.363577 ACATATCGATGCAAAGTAAACAGG 57.636 37.500 8.54 0.00 36.43 4.00
2367 2457 2.168521 CCGTGTCTCCATGTCCTGTATT 59.831 50.000 0.00 0.00 0.00 1.89
2399 2489 5.567138 ATTTCCCATCTGAACTAAAAGCG 57.433 39.130 0.00 0.00 0.00 4.68
2463 2553 3.119602 TGAAGTGTCCGTGTAGCTGTATC 60.120 47.826 0.00 0.00 0.00 2.24
2603 2696 8.611654 AACAAAAGACATAATAGTTACACCGT 57.388 30.769 0.00 0.00 0.00 4.83
2615 2720 7.067615 TGAGCCACTACAAAACAAAAGACATAA 59.932 33.333 0.00 0.00 0.00 1.90
2721 2826 6.209192 TGTGACCAGCAAATGTATTCAGAAAT 59.791 34.615 0.00 0.00 0.00 2.17
2907 3019 1.883275 CAAGGGTACGTTTTCATGCCA 59.117 47.619 0.00 0.00 32.45 4.92
3019 3140 7.570324 GCTTAGAACACAACTTAGCAGAAGAAG 60.570 40.741 5.47 0.77 39.04 2.85
3082 3203 5.893255 TCATTCTGTTATTTGCCCTTGCTAT 59.107 36.000 0.00 0.00 38.71 2.97
3115 3236 7.946655 AAAAGGAGCTAAAATGTTAAAGCAC 57.053 32.000 0.00 0.00 37.44 4.40
3459 3590 3.686726 CCTCTGAGCCACTAACAATTGAC 59.313 47.826 13.59 0.00 0.00 3.18
3477 3608 8.203563 TCACAATGTGCACAGAGTTATCCTCT 62.204 42.308 25.84 0.00 41.31 3.69
3486 3617 1.232119 TGCTCACAATGTGCACAGAG 58.768 50.000 25.84 24.10 41.27 3.35
3621 3784 3.698539 TCAGAACCACAAGTTGCATCAAA 59.301 39.130 1.81 0.00 39.40 2.69
3645 3820 6.062434 TCTACCGTACAAAACAAACCAATG 57.938 37.500 0.00 0.00 0.00 2.82
3683 3858 9.927668 ACCAAAACAAGGTAATCAATAATCAAG 57.072 29.630 0.00 0.00 37.67 3.02
3728 3903 4.740902 ACCAGGAGCTTAGGAACAAAAAT 58.259 39.130 6.99 0.00 0.00 1.82
3831 4040 1.193426 GCAGAACAAGCGACACTTCTC 59.807 52.381 0.00 0.00 36.04 2.87
3907 4121 2.806608 TCACCAAACAGTACCTCGAC 57.193 50.000 0.00 0.00 0.00 4.20
3941 4162 5.103940 ACAGATTTACCATACAGGCTCCAAT 60.104 40.000 0.00 0.00 43.14 3.16
3948 4169 4.699735 TGTGCAACAGATTTACCATACAGG 59.300 41.667 0.00 0.00 45.67 4.00
4019 4245 0.606401 CACCCAGTTGTACCTGCAGG 60.606 60.000 31.60 31.60 42.17 4.85
4167 4394 3.554524 CAACAATGGTAAGTTCACAGCG 58.445 45.455 0.00 0.00 0.00 5.18
4462 4689 4.338118 TCTTGACTGACCAACCAAATCAAC 59.662 41.667 0.00 0.00 0.00 3.18
4547 4775 7.279313 GTCAAGAACAAGTACCAAGTTTGAGTA 59.721 37.037 0.00 0.00 0.00 2.59
4578 4807 2.034048 TACCACTTGCGCCACTGACA 62.034 55.000 4.18 0.00 0.00 3.58
4642 4878 8.021955 ACGTTAGGTAAATAAAGTGCTTGTAC 57.978 34.615 0.00 0.00 0.00 2.90
4643 4879 8.497554 CAACGTTAGGTAAATAAAGTGCTTGTA 58.502 33.333 0.00 0.00 29.54 2.41
4799 5036 3.500448 TTAACAACCTCATCCAGCACA 57.500 42.857 0.00 0.00 0.00 4.57
4811 5048 8.880878 AAAACAACCATGTAGAATTAACAACC 57.119 30.769 0.00 0.00 39.40 3.77
4824 5061 6.405538 ACAGAATCAACAAAAACAACCATGT 58.594 32.000 0.00 0.00 43.14 3.21
4912 5149 4.819105 AATCCCAACTCGTCTGTTATGA 57.181 40.909 0.00 0.00 0.00 2.15
4918 5155 3.659786 TGTTGTAATCCCAACTCGTCTG 58.340 45.455 5.73 0.00 44.01 3.51
4919 5156 3.576982 TCTGTTGTAATCCCAACTCGTCT 59.423 43.478 5.73 0.00 44.01 4.18
4920 5157 3.921677 TCTGTTGTAATCCCAACTCGTC 58.078 45.455 5.73 0.00 44.01 4.20
4921 5158 4.315803 CTTCTGTTGTAATCCCAACTCGT 58.684 43.478 5.73 0.00 44.01 4.18
4922 5159 3.684788 CCTTCTGTTGTAATCCCAACTCG 59.315 47.826 5.73 0.00 44.01 4.18
4923 5160 4.906618 TCCTTCTGTTGTAATCCCAACTC 58.093 43.478 5.73 0.00 44.01 3.01
4924 5161 4.993705 TCCTTCTGTTGTAATCCCAACT 57.006 40.909 5.73 0.00 44.01 3.16
4925 5162 7.283329 AGATATCCTTCTGTTGTAATCCCAAC 58.717 38.462 0.00 0.00 43.95 3.77
4926 5163 7.451731 AGATATCCTTCTGTTGTAATCCCAA 57.548 36.000 0.00 0.00 0.00 4.12
4927 5164 7.235606 CCTAGATATCCTTCTGTTGTAATCCCA 59.764 40.741 0.00 0.00 0.00 4.37
4928 5165 7.235812 ACCTAGATATCCTTCTGTTGTAATCCC 59.764 40.741 0.00 0.00 0.00 3.85
4929 5166 8.091449 CACCTAGATATCCTTCTGTTGTAATCC 58.909 40.741 0.00 0.00 0.00 3.01
4930 5167 7.600752 GCACCTAGATATCCTTCTGTTGTAATC 59.399 40.741 0.00 0.00 0.00 1.75
4931 5168 7.291182 AGCACCTAGATATCCTTCTGTTGTAAT 59.709 37.037 0.00 0.00 0.00 1.89
4932 5169 6.611642 AGCACCTAGATATCCTTCTGTTGTAA 59.388 38.462 0.00 0.00 0.00 2.41
4933 5170 6.136857 AGCACCTAGATATCCTTCTGTTGTA 58.863 40.000 0.00 0.00 0.00 2.41
4934 5171 4.965532 AGCACCTAGATATCCTTCTGTTGT 59.034 41.667 0.00 0.00 0.00 3.32
4935 5172 5.543507 AGCACCTAGATATCCTTCTGTTG 57.456 43.478 0.00 0.00 0.00 3.33
4936 5173 7.069986 TCTAAGCACCTAGATATCCTTCTGTT 58.930 38.462 0.00 0.00 0.00 3.16
4937 5174 6.615617 TCTAAGCACCTAGATATCCTTCTGT 58.384 40.000 0.00 0.00 0.00 3.41
4938 5175 7.531857 TTCTAAGCACCTAGATATCCTTCTG 57.468 40.000 0.00 0.00 0.00 3.02
4939 5176 8.554490 TTTTCTAAGCACCTAGATATCCTTCT 57.446 34.615 0.00 0.00 0.00 2.85
4940 5177 9.785982 ATTTTTCTAAGCACCTAGATATCCTTC 57.214 33.333 0.00 0.00 0.00 3.46
4947 5184 9.178758 CCAGTTTATTTTTCTAAGCACCTAGAT 57.821 33.333 0.00 0.00 0.00 1.98
4948 5185 8.380099 TCCAGTTTATTTTTCTAAGCACCTAGA 58.620 33.333 0.00 0.00 0.00 2.43
4949 5186 8.561738 TCCAGTTTATTTTTCTAAGCACCTAG 57.438 34.615 0.00 0.00 0.00 3.02
4950 5187 9.528489 AATCCAGTTTATTTTTCTAAGCACCTA 57.472 29.630 0.00 0.00 0.00 3.08
4951 5188 8.422577 AATCCAGTTTATTTTTCTAAGCACCT 57.577 30.769 0.00 0.00 0.00 4.00
4952 5189 9.489084 AAAATCCAGTTTATTTTTCTAAGCACC 57.511 29.630 0.00 0.00 33.78 5.01
4986 5223 8.956426 TCTTTCTTATAAAAATAGGCACTGGTG 58.044 33.333 0.00 0.00 41.52 4.17
4987 5224 8.957466 GTCTTTCTTATAAAAATAGGCACTGGT 58.043 33.333 0.00 0.00 41.52 4.00
4988 5225 8.122952 CGTCTTTCTTATAAAAATAGGCACTGG 58.877 37.037 0.00 0.00 41.52 4.00
4989 5226 8.665685 ACGTCTTTCTTATAAAAATAGGCACTG 58.334 33.333 0.00 0.00 41.52 3.66
4990 5227 8.788325 ACGTCTTTCTTATAAAAATAGGCACT 57.212 30.769 0.00 0.00 46.37 4.40
4991 5228 8.880750 AGACGTCTTTCTTATAAAAATAGGCAC 58.119 33.333 13.58 0.00 0.00 5.01
5007 5244 9.235537 GGATAGACACTTAATTAGACGTCTTTC 57.764 37.037 25.44 14.65 39.34 2.62
5008 5245 8.968969 AGGATAGACACTTAATTAGACGTCTTT 58.031 33.333 25.44 15.42 39.34 2.52
5009 5246 8.407064 CAGGATAGACACTTAATTAGACGTCTT 58.593 37.037 25.44 8.59 39.34 3.01
5010 5247 7.774157 TCAGGATAGACACTTAATTAGACGTCT 59.226 37.037 23.66 23.66 40.63 4.18
5011 5248 7.928103 TCAGGATAGACACTTAATTAGACGTC 58.072 38.462 7.70 7.70 33.10 4.34
5012 5249 7.876936 TCAGGATAGACACTTAATTAGACGT 57.123 36.000 0.00 0.00 0.00 4.34
5013 5250 8.353684 ACATCAGGATAGACACTTAATTAGACG 58.646 37.037 0.00 0.00 0.00 4.18
5019 5256 9.838339 CCTTAAACATCAGGATAGACACTTAAT 57.162 33.333 0.00 0.00 30.81 1.40
5020 5257 9.042450 TCCTTAAACATCAGGATAGACACTTAA 57.958 33.333 0.00 0.00 33.99 1.85
5021 5258 8.603898 TCCTTAAACATCAGGATAGACACTTA 57.396 34.615 0.00 0.00 33.99 2.24
5022 5259 7.496346 TCCTTAAACATCAGGATAGACACTT 57.504 36.000 0.00 0.00 33.99 3.16
5023 5260 7.496346 TTCCTTAAACATCAGGATAGACACT 57.504 36.000 0.00 0.00 39.05 3.55
5024 5261 7.824779 ACTTTCCTTAAACATCAGGATAGACAC 59.175 37.037 11.31 0.00 39.43 3.67
5025 5262 7.918076 ACTTTCCTTAAACATCAGGATAGACA 58.082 34.615 11.31 0.00 39.43 3.41
5026 5263 8.794335 AACTTTCCTTAAACATCAGGATAGAC 57.206 34.615 11.31 0.00 39.43 2.59
5027 5264 9.231297 CAAACTTTCCTTAAACATCAGGATAGA 57.769 33.333 11.31 0.00 39.43 1.98
5028 5265 8.462016 CCAAACTTTCCTTAAACATCAGGATAG 58.538 37.037 4.63 4.63 41.58 2.08
5029 5266 7.947890 ACCAAACTTTCCTTAAACATCAGGATA 59.052 33.333 0.00 0.00 39.05 2.59
5030 5267 6.782494 ACCAAACTTTCCTTAAACATCAGGAT 59.218 34.615 0.00 0.00 39.05 3.24
5031 5268 6.133356 ACCAAACTTTCCTTAAACATCAGGA 58.867 36.000 0.00 0.00 37.42 3.86
5032 5269 6.405278 ACCAAACTTTCCTTAAACATCAGG 57.595 37.500 0.00 0.00 0.00 3.86
5033 5270 9.981114 ATAAACCAAACTTTCCTTAAACATCAG 57.019 29.630 0.00 0.00 0.00 2.90
5040 5277 9.203163 TGGAGAAATAAACCAAACTTTCCTTAA 57.797 29.630 0.00 0.00 0.00 1.85
5041 5278 8.770010 TGGAGAAATAAACCAAACTTTCCTTA 57.230 30.769 0.00 0.00 0.00 2.69
5042 5279 7.669089 TGGAGAAATAAACCAAACTTTCCTT 57.331 32.000 0.00 0.00 0.00 3.36
5043 5280 7.669089 TTGGAGAAATAAACCAAACTTTCCT 57.331 32.000 0.00 0.00 40.12 3.36
5044 5281 6.423905 GCTTGGAGAAATAAACCAAACTTTCC 59.576 38.462 0.00 0.00 42.02 3.13
5045 5282 6.983890 TGCTTGGAGAAATAAACCAAACTTTC 59.016 34.615 0.00 0.00 42.02 2.62
5046 5283 6.761242 GTGCTTGGAGAAATAAACCAAACTTT 59.239 34.615 0.00 0.00 42.02 2.66
5047 5284 6.280643 GTGCTTGGAGAAATAAACCAAACTT 58.719 36.000 0.00 0.00 42.02 2.66
5048 5285 5.221441 GGTGCTTGGAGAAATAAACCAAACT 60.221 40.000 0.00 0.00 42.02 2.66
5049 5286 4.988540 GGTGCTTGGAGAAATAAACCAAAC 59.011 41.667 0.00 0.00 42.02 2.93
5050 5287 4.039852 GGGTGCTTGGAGAAATAAACCAAA 59.960 41.667 0.00 0.00 42.02 3.28
5051 5288 3.576550 GGGTGCTTGGAGAAATAAACCAA 59.423 43.478 0.00 0.00 40.68 3.67
5052 5289 3.161866 GGGTGCTTGGAGAAATAAACCA 58.838 45.455 0.00 0.00 0.00 3.67
5053 5290 3.193479 CAGGGTGCTTGGAGAAATAAACC 59.807 47.826 0.00 0.00 0.00 3.27
5054 5291 3.367395 GCAGGGTGCTTGGAGAAATAAAC 60.367 47.826 0.00 0.00 40.96 2.01
5055 5292 2.825532 GCAGGGTGCTTGGAGAAATAAA 59.174 45.455 0.00 0.00 40.96 1.40
5056 5293 2.224992 TGCAGGGTGCTTGGAGAAATAA 60.225 45.455 0.00 0.00 45.31 1.40
5057 5294 1.354031 TGCAGGGTGCTTGGAGAAATA 59.646 47.619 0.00 0.00 45.31 1.40
5058 5295 0.112995 TGCAGGGTGCTTGGAGAAAT 59.887 50.000 0.00 0.00 45.31 2.17
5059 5296 0.112995 ATGCAGGGTGCTTGGAGAAA 59.887 50.000 0.00 0.00 45.31 2.52
5060 5297 0.112995 AATGCAGGGTGCTTGGAGAA 59.887 50.000 0.00 0.00 45.31 2.87
5061 5298 0.609957 CAATGCAGGGTGCTTGGAGA 60.610 55.000 0.00 0.00 45.31 3.71
5062 5299 0.896940 ACAATGCAGGGTGCTTGGAG 60.897 55.000 12.53 0.89 45.31 3.86
5063 5300 0.403655 TACAATGCAGGGTGCTTGGA 59.596 50.000 3.46 4.77 45.31 3.53
5064 5301 0.527565 GTACAATGCAGGGTGCTTGG 59.472 55.000 3.46 2.94 45.31 3.61
5065 5302 1.246649 TGTACAATGCAGGGTGCTTG 58.753 50.000 9.39 5.27 45.31 4.01
5066 5303 1.888512 CTTGTACAATGCAGGGTGCTT 59.111 47.619 9.13 0.00 45.31 3.91
5067 5304 1.538047 CTTGTACAATGCAGGGTGCT 58.462 50.000 9.13 0.00 45.31 4.40
5068 5305 0.527565 CCTTGTACAATGCAGGGTGC 59.472 55.000 9.13 2.87 45.29 5.01
5069 5306 0.527565 GCCTTGTACAATGCAGGGTG 59.472 55.000 25.28 5.75 35.77 4.61
5070 5307 0.611896 GGCCTTGTACAATGCAGGGT 60.612 55.000 29.20 0.00 35.77 4.34
5071 5308 0.323725 AGGCCTTGTACAATGCAGGG 60.324 55.000 29.20 18.77 34.30 4.45
5072 5309 2.418368 TAGGCCTTGTACAATGCAGG 57.582 50.000 29.20 19.31 34.30 4.85
5073 5310 3.081061 TGTTAGGCCTTGTACAATGCAG 58.919 45.455 29.20 11.03 34.30 4.41
5074 5311 3.081061 CTGTTAGGCCTTGTACAATGCA 58.919 45.455 29.20 13.23 34.30 3.96
5075 5312 2.423538 CCTGTTAGGCCTTGTACAATGC 59.576 50.000 23.06 23.06 0.00 3.56
5088 5325 3.199946 TCCAAGGATGTTAGCCTGTTAGG 59.800 47.826 0.00 0.00 38.80 2.69
5089 5326 4.080863 ACTCCAAGGATGTTAGCCTGTTAG 60.081 45.833 0.00 0.00 35.50 2.34
5090 5327 3.844211 ACTCCAAGGATGTTAGCCTGTTA 59.156 43.478 0.00 0.00 35.50 2.41
5091 5328 2.644798 ACTCCAAGGATGTTAGCCTGTT 59.355 45.455 0.00 0.00 35.50 3.16
5092 5329 2.026822 CACTCCAAGGATGTTAGCCTGT 60.027 50.000 0.00 0.00 35.50 4.00
5093 5330 2.636830 CACTCCAAGGATGTTAGCCTG 58.363 52.381 0.00 0.00 35.50 4.85
5094 5331 1.561542 CCACTCCAAGGATGTTAGCCT 59.438 52.381 0.00 0.00 37.35 4.58
5095 5332 1.282157 ACCACTCCAAGGATGTTAGCC 59.718 52.381 0.00 0.00 0.00 3.93
5096 5333 2.789409 ACCACTCCAAGGATGTTAGC 57.211 50.000 0.00 0.00 0.00 3.09
5097 5334 4.383118 CCACTACCACTCCAAGGATGTTAG 60.383 50.000 0.00 0.00 0.00 2.34
5098 5335 3.517901 CCACTACCACTCCAAGGATGTTA 59.482 47.826 0.00 0.00 0.00 2.41
5099 5336 2.305927 CCACTACCACTCCAAGGATGTT 59.694 50.000 0.00 0.00 0.00 2.71
5100 5337 1.909302 CCACTACCACTCCAAGGATGT 59.091 52.381 0.00 0.00 0.00 3.06
5101 5338 1.210478 CCCACTACCACTCCAAGGATG 59.790 57.143 0.00 0.00 0.00 3.51
5102 5339 1.080498 TCCCACTACCACTCCAAGGAT 59.920 52.381 0.00 0.00 0.00 3.24
5103 5340 0.490017 TCCCACTACCACTCCAAGGA 59.510 55.000 0.00 0.00 0.00 3.36
5104 5341 1.003233 GTTCCCACTACCACTCCAAGG 59.997 57.143 0.00 0.00 0.00 3.61
5105 5342 1.978580 AGTTCCCACTACCACTCCAAG 59.021 52.381 0.00 0.00 0.00 3.61
5106 5343 2.112279 AGTTCCCACTACCACTCCAA 57.888 50.000 0.00 0.00 0.00 3.53
5107 5344 2.901839 GTTAGTTCCCACTACCACTCCA 59.098 50.000 0.00 0.00 35.05 3.86
5108 5345 2.901839 TGTTAGTTCCCACTACCACTCC 59.098 50.000 0.00 0.00 35.05 3.85
5109 5346 3.306571 GGTGTTAGTTCCCACTACCACTC 60.307 52.174 9.19 0.00 44.51 3.51
5110 5347 2.636403 GGTGTTAGTTCCCACTACCACT 59.364 50.000 9.19 0.00 44.51 4.00
5111 5348 2.289882 GGGTGTTAGTTCCCACTACCAC 60.290 54.545 2.36 2.36 44.42 4.16
5112 5349 1.980036 GGGTGTTAGTTCCCACTACCA 59.020 52.381 0.00 0.00 42.95 3.25
5113 5350 2.263545 AGGGTGTTAGTTCCCACTACC 58.736 52.381 3.04 0.00 45.64 3.18
5114 5351 3.558533 CCAAGGGTGTTAGTTCCCACTAC 60.559 52.174 3.04 0.00 45.64 2.73
5115 5352 2.640826 CCAAGGGTGTTAGTTCCCACTA 59.359 50.000 3.04 0.00 45.64 2.74
5116 5353 1.423921 CCAAGGGTGTTAGTTCCCACT 59.576 52.381 3.04 0.00 45.64 4.00
5117 5354 1.422402 TCCAAGGGTGTTAGTTCCCAC 59.578 52.381 3.04 0.00 45.64 4.61
5118 5355 1.702957 CTCCAAGGGTGTTAGTTCCCA 59.297 52.381 3.04 0.00 45.64 4.37
5119 5356 1.703513 ACTCCAAGGGTGTTAGTTCCC 59.296 52.381 0.00 0.00 43.71 3.97
5120 5357 2.370849 TCACTCCAAGGGTGTTAGTTCC 59.629 50.000 0.00 0.00 36.25 3.62
5121 5358 3.764237 TCACTCCAAGGGTGTTAGTTC 57.236 47.619 0.00 0.00 36.25 3.01
5122 5359 4.844655 ACTATCACTCCAAGGGTGTTAGTT 59.155 41.667 11.01 0.00 42.53 2.24
5123 5360 4.223032 CACTATCACTCCAAGGGTGTTAGT 59.777 45.833 11.01 11.01 44.27 2.24
5124 5361 4.383118 CCACTATCACTCCAAGGGTGTTAG 60.383 50.000 9.97 9.97 40.21 2.34
5125 5362 3.517901 CCACTATCACTCCAAGGGTGTTA 59.482 47.826 0.00 0.00 36.25 2.41
5126 5363 2.305927 CCACTATCACTCCAAGGGTGTT 59.694 50.000 0.00 0.00 36.25 3.32
5127 5364 1.909302 CCACTATCACTCCAAGGGTGT 59.091 52.381 0.00 0.00 36.25 4.16
5128 5365 1.210478 CCCACTATCACTCCAAGGGTG 59.790 57.143 0.00 0.00 36.17 4.61
5129 5366 1.080498 TCCCACTATCACTCCAAGGGT 59.920 52.381 0.00 0.00 36.24 4.34
5130 5367 1.879575 TCCCACTATCACTCCAAGGG 58.120 55.000 0.00 0.00 36.15 3.95
5131 5368 2.420687 GCTTCCCACTATCACTCCAAGG 60.421 54.545 0.00 0.00 0.00 3.61
5132 5369 2.503356 AGCTTCCCACTATCACTCCAAG 59.497 50.000 0.00 0.00 0.00 3.61
5133 5370 2.501723 GAGCTTCCCACTATCACTCCAA 59.498 50.000 0.00 0.00 0.00 3.53
5134 5371 2.111384 GAGCTTCCCACTATCACTCCA 58.889 52.381 0.00 0.00 0.00 3.86
5135 5372 2.102252 CAGAGCTTCCCACTATCACTCC 59.898 54.545 0.00 0.00 0.00 3.85
5136 5373 2.763448 ACAGAGCTTCCCACTATCACTC 59.237 50.000 0.00 0.00 0.00 3.51
5137 5374 2.826488 ACAGAGCTTCCCACTATCACT 58.174 47.619 0.00 0.00 0.00 3.41
5138 5375 3.954904 TCTACAGAGCTTCCCACTATCAC 59.045 47.826 0.00 0.00 0.00 3.06
5139 5376 4.211125 CTCTACAGAGCTTCCCACTATCA 58.789 47.826 0.00 0.00 35.13 2.15
5140 5377 3.572255 CCTCTACAGAGCTTCCCACTATC 59.428 52.174 0.40 0.00 40.75 2.08
5141 5378 3.571590 CCTCTACAGAGCTTCCCACTAT 58.428 50.000 0.40 0.00 40.75 2.12
5142 5379 2.950874 GCCTCTACAGAGCTTCCCACTA 60.951 54.545 0.40 0.00 40.75 2.74
5143 5380 1.859302 CCTCTACAGAGCTTCCCACT 58.141 55.000 0.40 0.00 40.75 4.00
5144 5381 0.176910 GCCTCTACAGAGCTTCCCAC 59.823 60.000 0.40 0.00 40.75 4.61
5145 5382 0.041833 AGCCTCTACAGAGCTTCCCA 59.958 55.000 0.40 0.00 40.75 4.37
5146 5383 2.074729 TAGCCTCTACAGAGCTTCCC 57.925 55.000 0.40 0.00 40.75 3.97
5147 5384 2.761208 TGTTAGCCTCTACAGAGCTTCC 59.239 50.000 0.40 0.00 40.75 3.46
5148 5385 3.181480 CCTGTTAGCCTCTACAGAGCTTC 60.181 52.174 8.12 1.59 43.45 3.86
5149 5386 2.763448 CCTGTTAGCCTCTACAGAGCTT 59.237 50.000 8.12 0.00 43.45 3.74
5150 5387 2.383855 CCTGTTAGCCTCTACAGAGCT 58.616 52.381 8.12 4.92 43.45 4.09
5151 5388 1.202475 GCCTGTTAGCCTCTACAGAGC 60.202 57.143 8.12 6.56 43.45 4.09
5152 5389 2.383855 AGCCTGTTAGCCTCTACAGAG 58.616 52.381 8.12 0.00 43.45 3.35
5153 5390 2.534042 AGCCTGTTAGCCTCTACAGA 57.466 50.000 8.12 0.00 43.45 3.41
5154 5391 3.447586 TGTTAGCCTGTTAGCCTCTACAG 59.552 47.826 0.00 0.00 41.08 2.74
5155 5392 3.194968 GTGTTAGCCTGTTAGCCTCTACA 59.805 47.826 0.00 0.00 0.00 2.74
5156 5393 3.430513 GGTGTTAGCCTGTTAGCCTCTAC 60.431 52.174 0.00 0.00 0.00 2.59
5157 5394 2.764572 GGTGTTAGCCTGTTAGCCTCTA 59.235 50.000 0.00 0.00 0.00 2.43
5158 5395 1.555533 GGTGTTAGCCTGTTAGCCTCT 59.444 52.381 0.00 0.00 0.00 3.69
5159 5396 1.407025 GGGTGTTAGCCTGTTAGCCTC 60.407 57.143 0.00 0.00 31.81 4.70
5160 5397 0.618981 GGGTGTTAGCCTGTTAGCCT 59.381 55.000 0.00 0.00 31.81 4.58
5161 5398 0.618981 AGGGTGTTAGCCTGTTAGCC 59.381 55.000 0.00 0.00 45.86 3.93
5169 5406 0.322546 CCACTCCAAGGGTGTTAGCC 60.323 60.000 0.00 0.00 35.59 3.93
5170 5407 0.400594 ACCACTCCAAGGGTGTTAGC 59.599 55.000 0.00 0.00 35.67 3.09
5171 5408 2.904434 ACTACCACTCCAAGGGTGTTAG 59.096 50.000 0.00 0.00 38.06 2.34
5172 5409 2.635915 CACTACCACTCCAAGGGTGTTA 59.364 50.000 0.00 0.00 38.06 2.41
5173 5410 1.420138 CACTACCACTCCAAGGGTGTT 59.580 52.381 0.00 0.00 38.06 3.32
5174 5411 1.056660 CACTACCACTCCAAGGGTGT 58.943 55.000 0.00 0.00 38.06 4.16
5175 5412 0.324943 CCACTACCACTCCAAGGGTG 59.675 60.000 0.00 0.00 38.06 4.61
5176 5413 0.840722 CCCACTACCACTCCAAGGGT 60.841 60.000 0.00 0.00 41.21 4.34
5177 5414 0.546747 TCCCACTACCACTCCAAGGG 60.547 60.000 0.00 0.00 36.15 3.95
5178 5415 1.279271 CTTCCCACTACCACTCCAAGG 59.721 57.143 0.00 0.00 0.00 3.61
5179 5416 1.339151 GCTTCCCACTACCACTCCAAG 60.339 57.143 0.00 0.00 0.00 3.61
5180 5417 0.690762 GCTTCCCACTACCACTCCAA 59.309 55.000 0.00 0.00 0.00 3.53
5181 5418 1.198759 GGCTTCCCACTACCACTCCA 61.199 60.000 0.00 0.00 0.00 3.86
5182 5419 1.198759 TGGCTTCCCACTACCACTCC 61.199 60.000 0.00 0.00 35.79 3.85
5183 5420 0.912486 ATGGCTTCCCACTACCACTC 59.088 55.000 0.00 0.00 45.77 3.51
5184 5421 0.620556 CATGGCTTCCCACTACCACT 59.379 55.000 0.00 0.00 45.77 4.00
5185 5422 0.328258 ACATGGCTTCCCACTACCAC 59.672 55.000 0.00 0.00 45.77 4.16
5186 5423 1.837439 CTACATGGCTTCCCACTACCA 59.163 52.381 0.00 0.00 45.77 3.25
5187 5424 2.103263 CTCTACATGGCTTCCCACTACC 59.897 54.545 0.00 0.00 45.77 3.18
5188 5425 2.103263 CCTCTACATGGCTTCCCACTAC 59.897 54.545 0.00 0.00 45.77 2.73
5189 5426 2.398588 CCTCTACATGGCTTCCCACTA 58.601 52.381 0.00 0.00 45.77 2.74
5190 5427 1.207791 CCTCTACATGGCTTCCCACT 58.792 55.000 0.00 0.00 45.77 4.00
5191 5428 0.464554 GCCTCTACATGGCTTCCCAC 60.465 60.000 0.00 0.00 45.77 4.61
5192 5429 1.915228 GCCTCTACATGGCTTCCCA 59.085 57.895 0.00 0.00 46.38 4.37
5193 5430 4.887615 GCCTCTACATGGCTTCCC 57.112 61.111 0.00 0.00 46.38 3.97
5199 5436 6.238211 CGATTTCTGTTTTAGCCTCTACATGG 60.238 42.308 0.00 0.00 0.00 3.66
5200 5437 6.535150 TCGATTTCTGTTTTAGCCTCTACATG 59.465 38.462 0.00 0.00 0.00 3.21
5201 5438 6.640518 TCGATTTCTGTTTTAGCCTCTACAT 58.359 36.000 0.00 0.00 0.00 2.29
5202 5439 6.032956 TCGATTTCTGTTTTAGCCTCTACA 57.967 37.500 0.00 0.00 0.00 2.74
5203 5440 6.590677 AGTTCGATTTCTGTTTTAGCCTCTAC 59.409 38.462 0.00 0.00 0.00 2.59
5204 5441 6.698380 AGTTCGATTTCTGTTTTAGCCTCTA 58.302 36.000 0.00 0.00 0.00 2.43
5205 5442 5.552178 AGTTCGATTTCTGTTTTAGCCTCT 58.448 37.500 0.00 0.00 0.00 3.69
5206 5443 5.864628 AGTTCGATTTCTGTTTTAGCCTC 57.135 39.130 0.00 0.00 0.00 4.70
5207 5444 6.128254 GCTTAGTTCGATTTCTGTTTTAGCCT 60.128 38.462 0.00 0.00 0.00 4.58
5208 5445 6.022208 GCTTAGTTCGATTTCTGTTTTAGCC 58.978 40.000 0.00 0.00 0.00 3.93
5209 5446 6.832804 AGCTTAGTTCGATTTCTGTTTTAGC 58.167 36.000 0.00 0.00 0.00 3.09
5210 5447 9.742552 GTAAGCTTAGTTCGATTTCTGTTTTAG 57.257 33.333 6.38 0.00 0.00 1.85
5211 5448 9.263538 TGTAAGCTTAGTTCGATTTCTGTTTTA 57.736 29.630 6.38 0.00 0.00 1.52
5212 5449 8.068380 GTGTAAGCTTAGTTCGATTTCTGTTTT 58.932 33.333 6.38 0.00 0.00 2.43
5213 5450 7.307811 GGTGTAAGCTTAGTTCGATTTCTGTTT 60.308 37.037 6.38 0.00 0.00 2.83
5214 5451 6.147328 GGTGTAAGCTTAGTTCGATTTCTGTT 59.853 38.462 6.38 0.00 0.00 3.16
5215 5452 5.638234 GGTGTAAGCTTAGTTCGATTTCTGT 59.362 40.000 6.38 0.00 0.00 3.41
5216 5453 5.869888 AGGTGTAAGCTTAGTTCGATTTCTG 59.130 40.000 6.38 0.00 46.63 3.02
5217 5454 6.038997 AGGTGTAAGCTTAGTTCGATTTCT 57.961 37.500 6.38 0.00 46.63 2.52
5231 5468 0.960861 GTCCCTGGCAAGGTGTAAGC 60.961 60.000 6.34 0.00 42.74 3.09
5232 5469 0.693049 AGTCCCTGGCAAGGTGTAAG 59.307 55.000 6.34 0.00 42.74 2.34
5233 5470 1.145571 AAGTCCCTGGCAAGGTGTAA 58.854 50.000 6.34 0.00 42.74 2.41
5234 5471 0.400213 CAAGTCCCTGGCAAGGTGTA 59.600 55.000 6.34 0.00 42.74 2.90
5235 5472 1.151450 CAAGTCCCTGGCAAGGTGT 59.849 57.895 6.34 0.00 42.74 4.16
5236 5473 2.270986 GCAAGTCCCTGGCAAGGTG 61.271 63.158 6.34 0.00 42.74 4.00
5237 5474 2.116125 GCAAGTCCCTGGCAAGGT 59.884 61.111 6.34 0.00 42.74 3.50
5238 5475 3.058160 CGCAAGTCCCTGGCAAGG 61.058 66.667 0.00 0.00 44.06 3.61
5239 5476 2.032528 TCGCAAGTCCCTGGCAAG 59.967 61.111 0.00 0.00 39.48 4.01
5240 5477 2.281484 GTCGCAAGTCCCTGGCAA 60.281 61.111 0.00 0.00 39.48 4.52
5241 5478 3.535629 CTGTCGCAAGTCCCTGGCA 62.536 63.158 0.00 0.00 39.48 4.92
5242 5479 2.743928 CTGTCGCAAGTCCCTGGC 60.744 66.667 0.00 0.00 39.48 4.85
5243 5480 2.046892 CCTGTCGCAAGTCCCTGG 60.047 66.667 0.00 0.00 39.48 4.45
5244 5481 2.046892 CCCTGTCGCAAGTCCCTG 60.047 66.667 0.00 0.00 39.48 4.45
5245 5482 2.203788 TCCCTGTCGCAAGTCCCT 60.204 61.111 0.00 0.00 39.48 4.20
5246 5483 2.047179 GTCCCTGTCGCAAGTCCC 60.047 66.667 0.00 0.00 39.48 4.46
5247 5484 1.079750 GAGTCCCTGTCGCAAGTCC 60.080 63.158 0.00 0.00 39.48 3.85
5248 5485 0.389166 CAGAGTCCCTGTCGCAAGTC 60.389 60.000 0.00 0.00 38.10 3.01
5249 5486 1.668294 CAGAGTCCCTGTCGCAAGT 59.332 57.895 0.00 0.00 38.10 3.16
5250 5487 1.079543 CCAGAGTCCCTGTCGCAAG 60.080 63.158 0.00 0.00 41.33 4.01
5251 5488 1.533033 TCCAGAGTCCCTGTCGCAA 60.533 57.895 0.00 0.00 41.33 4.85
5252 5489 1.979155 CTCCAGAGTCCCTGTCGCA 60.979 63.158 0.00 0.00 41.33 5.10
5253 5490 1.979693 ACTCCAGAGTCCCTGTCGC 60.980 63.158 0.00 0.00 41.33 5.19
5254 5491 4.425099 ACTCCAGAGTCCCTGTCG 57.575 61.111 0.00 0.00 41.33 4.35
5262 5499 2.836981 CCATTTCCTGAGACTCCAGAGT 59.163 50.000 0.00 0.00 45.84 3.24
5263 5500 2.419851 GCCATTTCCTGAGACTCCAGAG 60.420 54.545 0.00 0.00 36.29 3.35
5264 5501 1.556911 GCCATTTCCTGAGACTCCAGA 59.443 52.381 0.00 0.00 36.29 3.86
5265 5502 1.741732 CGCCATTTCCTGAGACTCCAG 60.742 57.143 0.00 0.00 0.00 3.86
5266 5503 0.250234 CGCCATTTCCTGAGACTCCA 59.750 55.000 0.00 0.00 0.00 3.86
5267 5504 0.462759 CCGCCATTTCCTGAGACTCC 60.463 60.000 0.00 0.00 0.00 3.85
5268 5505 0.250513 ACCGCCATTTCCTGAGACTC 59.749 55.000 0.00 0.00 0.00 3.36
5269 5506 0.693049 AACCGCCATTTCCTGAGACT 59.307 50.000 0.00 0.00 0.00 3.24
5270 5507 2.007608 GTAACCGCCATTTCCTGAGAC 58.992 52.381 0.00 0.00 0.00 3.36
5271 5508 1.065709 GGTAACCGCCATTTCCTGAGA 60.066 52.381 0.00 0.00 0.00 3.27
5272 5509 1.339631 TGGTAACCGCCATTTCCTGAG 60.340 52.381 0.00 0.00 32.81 3.35
5273 5510 0.693622 TGGTAACCGCCATTTCCTGA 59.306 50.000 0.00 0.00 32.81 3.86
5274 5511 0.808755 GTGGTAACCGCCATTTCCTG 59.191 55.000 0.00 0.00 41.08 3.86
5275 5512 0.696501 AGTGGTAACCGCCATTTCCT 59.303 50.000 0.00 0.00 41.08 3.36
5364 5608 4.336713 GGGAGCTCTTTTGCTATTGTAAGG 59.663 45.833 14.64 0.00 44.17 2.69
5366 5610 5.179452 AGGGAGCTCTTTTGCTATTGTAA 57.821 39.130 14.64 0.00 44.17 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.