AutoCloner

Multiple sequence alignment - TraesCS2A01G125300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G125300	chr2A	100.000	3860	0	0	1	3860	74105445	74109304	0.000000e+00	7129.0
1	TraesCS2A01G125300	chr2A	91.395	430	28	4	3409	3829	74116680	74117109	7.190000e-162	580.0
2	TraesCS2A01G125300	chr2D	95.569	3205	123	11	1	3190	74935656	74938856	0.000000e+00	5114.0
3	TraesCS2A01G125300	chr2D	91.709	398	31	2	3434	3829	74949677	74950074	5.640000e-153	551.0
4	TraesCS2A01G125300	chr2D	88.393	112	5	1	2810	2921	365348913	365349016	1.130000e-25	128.0
5	TraesCS2A01G125300	chr2D	93.617	47	3	0	3063	3109	74938694	74938740	1.920000e-08	71.3
6	TraesCS2A01G125300	chr2B	91.895	3097	198	18	40	3109	114045983	114049053	0.000000e+00	4279.0
7	TraesCS2A01G125300	chr2B	91.337	404	27	3	3434	3829	114052360	114052763	2.620000e-151	545.0
8	TraesCS2A01G125300	chr2B	97.260	292	7	1	3539	3829	114049889	114050180	9.630000e-136	494.0
9	TraesCS2A01G125300	chr2B	95.973	298	7	3	3189	3484	114049599	114049893	2.700000e-131	479.0
10	TraesCS2A01G125300	chr2B	95.349	86	3	1	3105	3190	114049088	114049172	6.730000e-28	135.0
11	TraesCS2A01G125300	chr2B	93.617	47	3	0	3063	3109	12709696	12709650	1.920000e-08	71.3
12	TraesCS2A01G125300	chr2B	100.000	35	0	0	3826	3860	114050195	114050229	8.950000e-07	65.8
13	TraesCS2A01G125300	chr1D	91.859	651	35	10	3189	3829	459049694	459050336	0.000000e+00	893.0
14	TraesCS2A01G125300	chr1D	88.679	371	24	5	2624	2986	459048580	459048940	1.650000e-118	436.0
15	TraesCS2A01G125300	chr1D	85.714	140	15	1	795	929	459047907	459048046	4.020000e-30	143.0
16	TraesCS2A01G125300	chr1D	92.208	77	6	0	3110	3186	215043288	215043212	4.080000e-20	110.0
17	TraesCS2A01G125300	chr1D	93.617	47	3	0	3063	3109	66760371	66760325	1.920000e-08	71.3
18	TraesCS2A01G125300	chr1A	91.730	653	33	12	3189	3829	551484330	551484973	0.000000e+00	887.0
19	TraesCS2A01G125300	chr1A	87.383	214	17	5	2670	2873	551483198	551483411	1.790000e-58	237.0
20	TraesCS2A01G125300	chr1A	90.909	121	5	3	2868	2983	551483613	551483732	1.440000e-34	158.0
21	TraesCS2A01G125300	chr1B	90.526	665	30	19	3189	3829	631228874	631229529	0.000000e+00	848.0
22	TraesCS2A01G125300	chr1B	82.536	481	46	10	2511	2983	631227894	631228344	4.680000e-104	388.0
23	TraesCS2A01G125300	chr1B	89.637	193	17	3	24	215	280475879	280475689	3.850000e-60	243.0
24	TraesCS2A01G125300	chr1B	81.695	295	27	9	1699	1986	631227316	631227590	1.810000e-53	220.0
25	TraesCS2A01G125300	chr1B	93.617	47	3	0	3063	3109	513973833	513973787	1.920000e-08	71.3
26	TraesCS2A01G125300	chr1B	93.617	47	3	0	3063	3109	542807920	542807874	1.920000e-08	71.3
27	TraesCS2A01G125300	chr1B	94.444	36	0	2	2036	2071	631227630	631227663	2.000000e-03	54.7
28	TraesCS2A01G125300	chr4A	90.155	193	16	3	24	215	29364759	29364949	8.280000e-62	248.0
29	TraesCS2A01G125300	chr4A	90.155	193	16	3	24	215	428995001	428994811	8.280000e-62	248.0
30	TraesCS2A01G125300	chr4A	88.725	204	20	3	24	226	708069882	708069681	2.980000e-61	246.0
31	TraesCS2A01G125300	chr4A	88.725	204	20	3	24	226	708092537	708092336	2.980000e-61	246.0
32	TraesCS2A01G125300	chrUn	88.725	204	20	3	24	226	50448694	50448493	2.980000e-61	246.0
33	TraesCS2A01G125300	chrUn	93.617	47	3	0	3063	3109	93959193	93959147	1.920000e-08	71.3
34	TraesCS2A01G125300	chr4B	89.637	193	17	3	24	215	458279164	458278974	3.850000e-60	243.0
35	TraesCS2A01G125300	chr4B	100.000	28	0	0	3833	3860	431919189	431919162	7.000000e-03	52.8
36	TraesCS2A01G125300	chr7A	88.235	204	21	3	24	226	266940941	266940740	1.390000e-59	241.0
37	TraesCS2A01G125300	chr5B	93.617	47	3	0	3063	3109	43858170	43858216	1.920000e-08	71.3
38	TraesCS2A01G125300	chr3B	93.617	47	3	0	3063	3109	75640095	75640141	1.920000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G125300	chr2A	74105445	74109304	3859	False	7129.000000	7129	100.000000	1	3860	1	chr2A.!!$F1	3859
1	TraesCS2A01G125300	chr2D	74935656	74938856	3200	False	2592.650000	5114	94.593000	1	3190	2	chr2D.!!$F3	3189
2	TraesCS2A01G125300	chr2B	114045983	114052763	6780	False	999.633333	4279	95.302333	40	3860	6	chr2B.!!$F1	3820
3	TraesCS2A01G125300	chr1D	459047907	459050336	2429	False	490.666667	893	88.750667	795	3829	3	chr1D.!!$F1	3034
4	TraesCS2A01G125300	chr1A	551483198	551484973	1775	False	427.333333	887	90.007333	2670	3829	3	chr1A.!!$F1	1159
5	TraesCS2A01G125300	chr1B	631227316	631229529	2213	False	377.675000	848	87.300250	1699	3829	4	chr1B.!!$F1	2130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
882	891	1.745489	CCTGGGAAAGCTACACGGC	60.745	63.158	0.00	0.0	0.0	5.68	F
1350	1365	0.776810	TCTGGGTGAAGGCCATGAAA	59.223	50.000	5.01	0.0	0.0	2.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2538	2622	0.038618	CTTGACCGATCACGACACCA	60.039	55.0	0.0	0.0	42.66	4.17	R
3190	3764	0.674895	CGAACAAGAGGAGCCCCAAG	60.675	60.0	0.0	0.0	33.88	3.61	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
238	239	5.100259	CACATACTACACTTCGTACCTTGG	58.900	45.833	0.00	0.00	0.00	3.61
376	377	4.293415	CAGAAGCATCACAAAAACCACTC	58.707	43.478	0.00	0.00	0.00	3.51
431	433	3.911868	TCACCAGATTTGCAAAATTCGG	58.088	40.909	17.19	15.84	0.00	4.30
450	452	4.208746	TCGGAACTAAGGAGAAGAGATCC	58.791	47.826	0.00	0.00	37.07	3.36
465	467	3.461085	AGAGATCCCATGTTGTAGGCAAT	59.539	43.478	0.00	0.00	36.92	3.56
478	480	3.250762	TGTAGGCAATCAAATATCGCAGC	59.749	43.478	0.00	0.00	0.00	5.25
539	541	5.470437	CCACTACGAACTAGCAGATCTGATA	59.530	44.000	27.04	22.84	0.00	2.15
703	705	1.982073	GCTTGTCGAATTCGCTGGGG	61.982	60.000	22.90	11.97	39.60	4.96
746	748	4.610333	AGGCTAAAATCCCAAAACCCTAG	58.390	43.478	0.00	0.00	0.00	3.02
747	749	3.132289	GGCTAAAATCCCAAAACCCTAGC	59.868	47.826	0.00	0.00	0.00	3.42
882	891	1.745489	CCTGGGAAAGCTACACGGC	60.745	63.158	0.00	0.00	0.00	5.68
981	990	3.444805	GCTCAGCTCCCTCGTCGT	61.445	66.667	0.00	0.00	0.00	4.34
1005	1020	3.536917	CGGCGAGCTCCCATGGTA	61.537	66.667	11.73	0.00	0.00	3.25
1182	1197	2.507324	GAGACGCCGAGGTTCAGC	60.507	66.667	0.00	0.00	0.00	4.26
1350	1365	0.776810	TCTGGGTGAAGGCCATGAAA	59.223	50.000	5.01	0.00	0.00	2.69
1597	1637	8.373992	GTTGAATTAGCTACTTACTTGAGAACG	58.626	37.037	0.00	0.00	0.00	3.95
1677	1721	3.128242	CACCATTGCCTGAGTGAGATTTC	59.872	47.826	0.00	0.00	31.46	2.17
1700	1755	4.524316	TTTGCTTGGAGAATGAACATGG	57.476	40.909	0.00	0.00	0.00	3.66
1789	1847	9.567776	TGAACTCCTTACTGAACATTGAATTAA	57.432	29.630	0.00	0.00	0.00	1.40
1813	1875	1.536766	TGGCTGAACTTCTGAATTGCG	59.463	47.619	0.05	0.00	0.00	4.85
2091	2165	1.819632	GGATCTCACCCGCGCAAAT	60.820	57.895	8.75	0.00	0.00	2.32
2301	2385	2.203126	GATTCAGAGGGGGCGCAG	60.203	66.667	10.83	0.00	0.00	5.18
2403	2487	0.962489	CCAATAGGATCGACGAGGCT	59.038	55.000	3.01	0.00	36.89	4.58
2432	2516	1.002087	GACCCGAAACATGAGGAGTGT	59.998	52.381	0.00	0.00	0.00	3.55
2484	2568	1.720448	GATACTCGGCGCGTACGAC	60.720	63.158	21.65	9.98	46.80	4.34
2495	2579	1.500512	GCGTACGACAAGGCCAACAA	61.501	55.000	21.65	0.00	0.00	2.83
2509	2593	1.542492	CAACAAGCTGGAAGGAGCAT	58.458	50.000	0.00	0.00	41.83	3.79
2553	2637	0.895530	AGAATGGTGTCGTGATCGGT	59.104	50.000	0.00	0.00	37.69	4.69
2569	2653	2.049063	GTCAAGAGCCGTCGCAGT	60.049	61.111	0.00	0.00	37.52	4.40
2574	2658	2.996168	AAGAGCCGTCGCAGTTGCTT	62.996	55.000	2.29	0.00	39.32	3.91
2692	2785	2.300437	CTGAAGGAAGGGACGAAGAGTT	59.700	50.000	0.00	0.00	0.00	3.01
2707	2800	3.845781	AGAGTTGGAAGAGCAAAGACA	57.154	42.857	0.00	0.00	0.00	3.41
2709	2802	2.810852	GAGTTGGAAGAGCAAAGACAGG	59.189	50.000	0.00	0.00	0.00	4.00
2735	2832	4.118168	AGAAGGAATGGAGAAAAGGCAA	57.882	40.909	0.00	0.00	0.00	4.52
2825	2952	3.070018	ACAGGAAGAGCAAAATCACTCG	58.930	45.455	0.00	0.00	37.99	4.18
2873	3000	5.304101	TGATTTTGTAACTCCAGTGCCATTT	59.696	36.000	0.00	0.00	0.00	2.32
2876	3209	1.135689	GTAACTCCAGTGCCATTTGCG	60.136	52.381	0.00	0.00	45.60	4.85
3045	3385	3.546002	GCAACAGTAATGCCAACGTAA	57.454	42.857	0.00	0.00	37.85	3.18
3046	3386	3.231160	GCAACAGTAATGCCAACGTAAC	58.769	45.455	0.00	0.00	37.85	2.50
3047	3387	3.304123	GCAACAGTAATGCCAACGTAACA	60.304	43.478	0.00	0.00	37.85	2.41
3048	3388	4.614993	GCAACAGTAATGCCAACGTAACAT	60.615	41.667	0.00	0.00	37.85	2.71
3049	3389	4.939509	ACAGTAATGCCAACGTAACATC	57.060	40.909	0.00	0.00	0.00	3.06
3050	3390	4.575885	ACAGTAATGCCAACGTAACATCT	58.424	39.130	0.00	0.00	0.00	2.90
3051	3391	4.630069	ACAGTAATGCCAACGTAACATCTC	59.370	41.667	0.00	0.00	0.00	2.75
3052	3392	4.870426	CAGTAATGCCAACGTAACATCTCT	59.130	41.667	0.00	0.00	0.00	3.10
3053	3393	5.005779	CAGTAATGCCAACGTAACATCTCTC	59.994	44.000	0.00	0.00	0.00	3.20
3054	3394	3.895232	ATGCCAACGTAACATCTCTCT	57.105	42.857	0.00	0.00	0.00	3.10
3055	3395	2.959516	TGCCAACGTAACATCTCTCTG	58.040	47.619	0.00	0.00	0.00	3.35
3056	3396	2.271800	GCCAACGTAACATCTCTCTGG	58.728	52.381	0.00	0.00	0.00	3.86
3057	3397	2.094182	GCCAACGTAACATCTCTCTGGA	60.094	50.000	0.00	0.00	0.00	3.86
3058	3398	3.616560	GCCAACGTAACATCTCTCTGGAA	60.617	47.826	0.00	0.00	0.00	3.53
3059	3399	4.566004	CCAACGTAACATCTCTCTGGAAA	58.434	43.478	0.00	0.00	0.00	3.13
3060	3400	4.994852	CCAACGTAACATCTCTCTGGAAAA	59.005	41.667	0.00	0.00	0.00	2.29
3061	3401	5.468746	CCAACGTAACATCTCTCTGGAAAAA	59.531	40.000	0.00	0.00	0.00	1.94
3157	3731	7.283329	AGATTATAGACCTCAAAATGTGTCCC	58.717	38.462	0.00	0.00	0.00	4.46
3190	3764	9.748100	GAGAGAAACAACTTCGAAATAAGATTC	57.252	33.333	0.00	0.67	39.22	2.52
3191	3765	9.495572	AGAGAAACAACTTCGAAATAAGATTCT	57.504	29.630	0.00	5.50	39.22	2.40
3193	3767	9.884465	AGAAACAACTTCGAAATAAGATTCTTG	57.116	29.630	9.22	0.00	39.22	3.02
3194	3768	9.118236	GAAACAACTTCGAAATAAGATTCTTGG	57.882	33.333	9.22	0.00	0.00	3.61
3196	3770	6.151144	ACAACTTCGAAATAAGATTCTTGGGG	59.849	38.462	9.22	0.00	0.00	4.96
3200	4251	3.565902	CGAAATAAGATTCTTGGGGCTCC	59.434	47.826	9.22	0.00	0.00	4.70
3216	4267	2.049433	CCTCTTGTTCGCCGTCGT	60.049	61.111	0.00	0.00	36.96	4.34
3239	4293	1.210538	TGGCTGCCATCTCTTGATCT	58.789	50.000	19.30	0.00	0.00	2.75
3400	4454	2.936919	TTCTTGGCAGACATGTCACT	57.063	45.000	27.02	5.13	41.81	3.41
3416	4473	3.322254	TGTCACTGTTCTCCTTCTCCTTC	59.678	47.826	0.00	0.00	0.00	3.46
3419	4476	3.056179	CACTGTTCTCCTTCTCCTTCTCC	60.056	52.174	0.00	0.00	0.00	3.71
3420	4477	3.181412	ACTGTTCTCCTTCTCCTTCTCCT	60.181	47.826	0.00	0.00	0.00	3.69
3421	4478	3.837731	CTGTTCTCCTTCTCCTTCTCCTT	59.162	47.826	0.00	0.00	0.00	3.36
3422	4479	3.580458	TGTTCTCCTTCTCCTTCTCCTTG	59.420	47.826	0.00	0.00	0.00	3.61
3423	4480	3.551635	TCTCCTTCTCCTTCTCCTTGT	57.448	47.619	0.00	0.00	0.00	3.16
3424	4481	3.436243	TCTCCTTCTCCTTCTCCTTGTC	58.564	50.000	0.00	0.00	0.00	3.18
3429	4486	0.108424	CTCCTTCTCCTTGTCTGCGG	60.108	60.000	0.00	0.00	0.00	5.69
3602	4681	3.871775	GTGCAACACCCTTGTCATG	57.128	52.632	0.00	0.00	33.55	3.07
3613	4692	5.707298	ACACCCTTGTCATGAAAGTCTAATG	59.293	40.000	0.00	0.00	0.00	1.90
3663	4742	5.423015	TCACTGAAAATGGAGCTACTCATC	58.577	41.667	0.00	0.00	31.08	2.92
3750	4833	5.467063	CAGACAAAGTCCTTCAACTAACCTC	59.533	44.000	0.00	0.00	32.18	3.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	1.068055	GTTTGCTCCTGCTTGTCCATG	60.068	52.381	0.00	0.00	40.48	3.66
263	264	4.096003	AACGCTGCCCGCTGGTAT	62.096	61.111	0.00	0.00	41.76	2.73
369	370	3.004734	GCTGTGTTTGCTTATGAGTGGTT	59.995	43.478	0.00	0.00	0.00	3.67
372	373	2.413239	CGGCTGTGTTTGCTTATGAGTG	60.413	50.000	0.00	0.00	0.00	3.51
376	377	0.240678	TGCGGCTGTGTTTGCTTATG	59.759	50.000	0.00	0.00	0.00	1.90
431	433	5.365314	ACATGGGATCTCTTCTCCTTAGTTC	59.635	44.000	0.00	0.00	33.05	3.01
450	452	6.144854	CGATATTTGATTGCCTACAACATGG	58.855	40.000	0.00	0.00	38.99	3.66
465	467	1.794701	GATCTGCGCTGCGATATTTGA	59.205	47.619	28.07	12.98	0.00	2.69
478	480	2.349886	GCTAGGTTTGAACTGATCTGCG	59.650	50.000	0.00	0.00	0.00	5.18
539	541	2.634600	CCTACTCACTCGCTGTACTCT	58.365	52.381	0.00	0.00	0.00	3.24
746	748	2.128507	ATTCCCCTCTCGGTCTCGC	61.129	63.158	0.00	0.00	36.13	5.03
747	749	1.736586	CATTCCCCTCTCGGTCTCG	59.263	63.158	0.00	0.00	37.82	4.04
783	787	1.933853	CGGCCGCCAGATATAAATAGC	59.066	52.381	14.67	0.00	0.00	2.97
981	990	3.141488	GGAGCTCGCCGGAGAAGA	61.141	66.667	9.83	0.00	43.27	2.87
1182	1197	2.801631	GGACCCGAGCTCATCCCAG	61.802	68.421	15.40	0.00	0.00	4.45
1571	1609	8.373992	CGTTCTCAAGTAAGTAGCTAATTCAAC	58.626	37.037	10.14	4.24	0.00	3.18
1597	1637	3.854784	GCAACAAGCAGAGGACATTTCAC	60.855	47.826	0.00	0.00	44.79	3.18
1677	1721	4.868171	CCATGTTCATTCTCCAAGCAAATG	59.132	41.667	0.00	0.00	0.00	2.32
1752	1810	6.071672	TCAGTAAGGAGTTCAGATCAGAAGTG	60.072	42.308	12.47	0.00	31.56	3.16
1789	1847	4.992951	GCAATTCAGAAGTTCAGCCATTTT	59.007	37.500	5.50	0.00	0.00	1.82
1829	1891	5.685068	TCACATTGCCGATAAAATTAATGCG	59.315	36.000	0.00	0.00	0.00	4.73
2432	2516	4.308458	CGCACGGTTCCAGTCCCA	62.308	66.667	0.00	0.00	0.00	4.37
2461	2545	1.378882	TACGCGCCGAGTATCAAGGT	61.379	55.000	5.73	0.00	33.17	3.50
2484	2568	0.316204	CTTCCAGCTTGTTGGCCTTG	59.684	55.000	3.32	0.00	38.16	3.61
2495	2579	0.255318	CTCCAATGCTCCTTCCAGCT	59.745	55.000	0.00	0.00	40.39	4.24
2509	2593	1.302511	GCTCCGCCAGAAACTCCAA	60.303	57.895	0.00	0.00	0.00	3.53
2529	2613	3.673323	CGATCACGACACCATTCTCTTCA	60.673	47.826	0.00	0.00	42.66	3.02
2538	2622	0.038618	CTTGACCGATCACGACACCA	60.039	55.000	0.00	0.00	42.66	4.17
2553	2637	1.664649	CAACTGCGACGGCTCTTGA	60.665	57.895	0.00	0.00	40.82	3.02
2574	2658	4.776322	CTCCCGAACCATGCCGCA	62.776	66.667	0.00	0.00	0.00	5.69
2692	2785	1.072331	GACCCTGTCTTTGCTCTTCCA	59.928	52.381	0.00	0.00	0.00	3.53
2707	2800	2.921221	TCTCCATTCCTTCTTGACCCT	58.079	47.619	0.00	0.00	0.00	4.34
2709	2802	4.460731	CCTTTTCTCCATTCCTTCTTGACC	59.539	45.833	0.00	0.00	0.00	4.02
2735	2832	4.757594	TGAAATGCTGTGTTTGCTCTTTT	58.242	34.783	0.00	0.00	0.00	2.27
3094	3462	2.511218	AGGAGCCCTGCTTTTCATATCA	59.489	45.455	0.00	0.00	39.88	2.15
3097	3465	1.915489	TGAGGAGCCCTGCTTTTCATA	59.085	47.619	0.00	0.00	39.88	2.15
3157	3731	3.060003	CGAAGTTGTTTCTCTCTGCACTG	60.060	47.826	0.00	0.00	33.44	3.66
3190	3764	0.674895	CGAACAAGAGGAGCCCCAAG	60.675	60.000	0.00	0.00	33.88	3.61
3191	3765	1.374947	CGAACAAGAGGAGCCCCAA	59.625	57.895	0.00	0.00	33.88	4.12
3192	3766	3.068881	CGAACAAGAGGAGCCCCA	58.931	61.111	0.00	0.00	33.88	4.96
3193	3767	2.436824	GCGAACAAGAGGAGCCCC	60.437	66.667	0.00	0.00	0.00	5.80
3194	3768	2.436824	GGCGAACAAGAGGAGCCC	60.437	66.667	0.00	0.00	41.81	5.19
3196	3770	2.048127	ACGGCGAACAAGAGGAGC	60.048	61.111	16.62	0.00	0.00	4.70
3200	4251	0.732880	ATGACGACGGCGAACAAGAG	60.733	55.000	22.49	0.00	41.64	2.85
3216	4267	1.282738	TCAAGAGATGGCAGCCAATGA	59.717	47.619	20.84	14.71	36.95	2.57
3400	4454	3.551635	AGGAGAAGGAGAAGGAGAACA	57.448	47.619	0.00	0.00	0.00	3.18
3416	4473	0.108424	CCTCTTCCGCAGACAAGGAG	60.108	60.000	0.00	0.00	37.88	3.69
3419	4476	1.743252	GCCCTCTTCCGCAGACAAG	60.743	63.158	0.00	0.00	0.00	3.16
3420	4477	2.050836	TTGCCCTCTTCCGCAGACAA	62.051	55.000	0.00	0.00	36.14	3.18
3421	4478	2.454832	CTTGCCCTCTTCCGCAGACA	62.455	60.000	0.00	0.00	36.14	3.41
3422	4479	1.743252	CTTGCCCTCTTCCGCAGAC	60.743	63.158	0.00	0.00	36.14	3.51
3423	4480	2.665000	CTTGCCCTCTTCCGCAGA	59.335	61.111	0.00	0.00	36.14	4.26
3424	4481	2.437359	CCTTGCCCTCTTCCGCAG	60.437	66.667	0.00	0.00	36.14	5.18
3429	4486	5.475564	TGTAAATTTACACCTTGCCCTCTTC	59.524	40.000	23.91	0.00	38.64	2.87
3750	4833	3.848019	GCTTCACGCATTGACTGTTATTG	59.152	43.478	0.00	0.00	38.92	1.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.