Multiple sequence alignment - TraesCS2A01G125100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G125100 chr2A 100.000 4346 0 0 1 4346 74093908 74098253 0.000000e+00 8026.0
1 TraesCS2A01G125100 chr2A 90.203 592 55 3 3755 4344 623737151 623737741 0.000000e+00 769.0
2 TraesCS2A01G125100 chr2B 90.587 2624 136 43 1130 3663 113913019 113915621 0.000000e+00 3374.0
3 TraesCS2A01G125100 chr2B 80.537 298 20 21 860 1132 113912049 113912333 1.230000e-45 195.0
4 TraesCS2A01G125100 chr2D 91.817 1332 80 13 2359 3663 74928562 74929891 0.000000e+00 1829.0
5 TraesCS2A01G125100 chr2D 87.194 1390 81 45 954 2286 74927095 74928444 0.000000e+00 1491.0
6 TraesCS2A01G125100 chr2D 92.379 538 35 6 1 535 41871285 41871819 0.000000e+00 761.0
7 TraesCS2A01G125100 chr2D 90.503 179 11 2 622 796 74926804 74926980 9.400000e-57 231.0
8 TraesCS2A01G125100 chr2D 84.694 98 1 4 799 896 74927019 74927102 7.740000e-13 86.1
9 TraesCS2A01G125100 chr5A 97.944 535 8 3 1 534 685564572 685564040 0.000000e+00 924.0
10 TraesCS2A01G125100 chr5A 91.115 529 36 10 1 525 623252627 623253148 0.000000e+00 706.0
11 TraesCS2A01G125100 chr5D 93.098 594 39 2 3754 4346 21255079 21254487 0.000000e+00 869.0
12 TraesCS2A01G125100 chr5D 91.919 594 47 1 3754 4346 543621381 543621974 0.000000e+00 830.0
13 TraesCS2A01G125100 chr1D 93.209 589 39 1 3759 4346 298633765 298634353 0.000000e+00 865.0
14 TraesCS2A01G125100 chr7D 92.761 594 42 1 3754 4346 590598390 590597797 0.000000e+00 857.0
15 TraesCS2A01G125100 chr7D 90.909 539 38 10 5 539 119224818 119224287 0.000000e+00 713.0
16 TraesCS2A01G125100 chr7B 92.088 594 45 2 3754 4346 579568246 579567654 0.000000e+00 835.0
17 TraesCS2A01G125100 chr6D 91.681 589 48 1 3759 4346 322243963 322244551 0.000000e+00 815.0
18 TraesCS2A01G125100 chr3B 91.312 587 50 1 3761 4346 778469557 778468971 0.000000e+00 800.0
19 TraesCS2A01G125100 chr4A 90.067 594 57 2 3754 4346 651110166 651109574 0.000000e+00 769.0
20 TraesCS2A01G125100 chr4D 92.925 523 29 8 6 526 248828645 248829161 0.000000e+00 754.0
21 TraesCS2A01G125100 chr4D 90.737 529 35 13 1 525 404831540 404832058 0.000000e+00 693.0
22 TraesCS2A01G125100 chr3D 92.843 517 29 8 12 525 430313713 430314224 0.000000e+00 743.0
23 TraesCS2A01G125100 chr3D 91.509 530 36 9 1 525 501045578 501045053 0.000000e+00 721.0
24 TraesCS2A01G125100 chr7A 90.943 530 38 10 1 525 40352348 40351824 0.000000e+00 704.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G125100 chr2A 74093908 74098253 4345 False 8026.000 8026 100.000 1 4346 1 chr2A.!!$F1 4345
1 TraesCS2A01G125100 chr2A 623737151 623737741 590 False 769.000 769 90.203 3755 4344 1 chr2A.!!$F2 589
2 TraesCS2A01G125100 chr2B 113912049 113915621 3572 False 1784.500 3374 85.562 860 3663 2 chr2B.!!$F1 2803
3 TraesCS2A01G125100 chr2D 74926804 74929891 3087 False 909.275 1829 88.552 622 3663 4 chr2D.!!$F2 3041
4 TraesCS2A01G125100 chr2D 41871285 41871819 534 False 761.000 761 92.379 1 535 1 chr2D.!!$F1 534
5 TraesCS2A01G125100 chr5A 685564040 685564572 532 True 924.000 924 97.944 1 534 1 chr5A.!!$R1 533
6 TraesCS2A01G125100 chr5A 623252627 623253148 521 False 706.000 706 91.115 1 525 1 chr5A.!!$F1 524
7 TraesCS2A01G125100 chr5D 21254487 21255079 592 True 869.000 869 93.098 3754 4346 1 chr5D.!!$R1 592
8 TraesCS2A01G125100 chr5D 543621381 543621974 593 False 830.000 830 91.919 3754 4346 1 chr5D.!!$F1 592
9 TraesCS2A01G125100 chr1D 298633765 298634353 588 False 865.000 865 93.209 3759 4346 1 chr1D.!!$F1 587
10 TraesCS2A01G125100 chr7D 590597797 590598390 593 True 857.000 857 92.761 3754 4346 1 chr7D.!!$R2 592
11 TraesCS2A01G125100 chr7D 119224287 119224818 531 True 713.000 713 90.909 5 539 1 chr7D.!!$R1 534
12 TraesCS2A01G125100 chr7B 579567654 579568246 592 True 835.000 835 92.088 3754 4346 1 chr7B.!!$R1 592
13 TraesCS2A01G125100 chr6D 322243963 322244551 588 False 815.000 815 91.681 3759 4346 1 chr6D.!!$F1 587
14 TraesCS2A01G125100 chr3B 778468971 778469557 586 True 800.000 800 91.312 3761 4346 1 chr3B.!!$R1 585
15 TraesCS2A01G125100 chr4A 651109574 651110166 592 True 769.000 769 90.067 3754 4346 1 chr4A.!!$R1 592
16 TraesCS2A01G125100 chr4D 248828645 248829161 516 False 754.000 754 92.925 6 526 1 chr4D.!!$F1 520
17 TraesCS2A01G125100 chr4D 404831540 404832058 518 False 693.000 693 90.737 1 525 1 chr4D.!!$F2 524
18 TraesCS2A01G125100 chr3D 430313713 430314224 511 False 743.000 743 92.843 12 525 1 chr3D.!!$F1 513
19 TraesCS2A01G125100 chr3D 501045053 501045578 525 True 721.000 721 91.509 1 525 1 chr3D.!!$R1 524
20 TraesCS2A01G125100 chr7A 40351824 40352348 524 True 704.000 704 90.943 1 525 1 chr7A.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 717 0.034337 TGAAAGCCACCGTACTCCAC 59.966 55.0 0.00 0.00 0.0 4.02 F
2532 3434 0.111061 TGATGTTTGAGGGCTGCACT 59.889 50.0 2.85 2.85 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2616 3518 0.022853 GCGATGTCGTTTCGTAACCG 59.977 55.0 4.2 0.0 42.22 4.44 R
3695 4624 0.320771 ATCTTGGCTTTCGCTCGTGT 60.321 50.0 0.0 0.0 36.09 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
479 492 6.472887 TCAATTATTTCTCCCGACACTTCTT 58.527 36.000 0.00 0.00 0.00 2.52
481 494 3.771577 ATTTCTCCCGACACTTCTTGT 57.228 42.857 0.00 0.00 43.10 3.16
550 563 7.795482 TTATATAAAACAATCGTGTCCCTGG 57.205 36.000 0.00 0.00 36.80 4.45
551 564 0.958822 AAAACAATCGTGTCCCTGGC 59.041 50.000 0.00 0.00 36.80 4.85
552 565 0.179004 AAACAATCGTGTCCCTGGCA 60.179 50.000 0.00 0.00 36.80 4.92
553 566 0.179004 AACAATCGTGTCCCTGGCAA 60.179 50.000 0.00 0.00 36.80 4.52
554 567 0.889186 ACAATCGTGTCCCTGGCAAC 60.889 55.000 0.00 0.00 29.49 4.17
555 568 1.671054 AATCGTGTCCCTGGCAACG 60.671 57.895 2.39 2.39 42.51 4.10
556 569 2.107041 AATCGTGTCCCTGGCAACGA 62.107 55.000 13.03 13.03 42.51 3.85
557 570 2.107041 ATCGTGTCCCTGGCAACGAA 62.107 55.000 14.42 0.47 42.51 3.85
558 571 2.317609 CGTGTCCCTGGCAACGAAG 61.318 63.158 2.64 0.00 42.51 3.79
559 572 1.966451 GTGTCCCTGGCAACGAAGG 60.966 63.158 0.00 0.00 42.51 3.46
563 576 3.074281 CCTGGCAACGAAGGGGTA 58.926 61.111 0.00 0.00 42.51 3.69
564 577 1.607612 CCTGGCAACGAAGGGGTAT 59.392 57.895 0.00 0.00 42.51 2.73
565 578 0.748005 CCTGGCAACGAAGGGGTATG 60.748 60.000 0.00 0.00 42.51 2.39
566 579 0.748005 CTGGCAACGAAGGGGTATGG 60.748 60.000 0.00 0.00 42.51 2.74
567 580 1.453197 GGCAACGAAGGGGTATGGG 60.453 63.158 0.00 0.00 0.00 4.00
568 581 1.453197 GCAACGAAGGGGTATGGGG 60.453 63.158 0.00 0.00 0.00 4.96
569 582 1.226262 CAACGAAGGGGTATGGGGG 59.774 63.158 0.00 0.00 0.00 5.40
570 583 1.083329 AACGAAGGGGTATGGGGGA 59.917 57.895 0.00 0.00 0.00 4.81
571 584 0.550638 AACGAAGGGGTATGGGGGAA 60.551 55.000 0.00 0.00 0.00 3.97
572 585 0.328158 ACGAAGGGGTATGGGGGAAT 60.328 55.000 0.00 0.00 0.00 3.01
573 586 0.400594 CGAAGGGGTATGGGGGAATC 59.599 60.000 0.00 0.00 0.00 2.52
574 587 1.834540 GAAGGGGTATGGGGGAATCT 58.165 55.000 0.00 0.00 0.00 2.40
575 588 1.705745 GAAGGGGTATGGGGGAATCTC 59.294 57.143 0.00 0.00 0.00 2.75
576 589 0.653397 AGGGGTATGGGGGAATCTCA 59.347 55.000 0.00 0.00 0.00 3.27
577 590 1.012049 AGGGGTATGGGGGAATCTCAA 59.988 52.381 0.00 0.00 0.00 3.02
578 591 1.145119 GGGGTATGGGGGAATCTCAAC 59.855 57.143 0.00 0.00 0.00 3.18
579 592 1.145119 GGGTATGGGGGAATCTCAACC 59.855 57.143 0.00 0.00 0.00 3.77
580 593 1.145119 GGTATGGGGGAATCTCAACCC 59.855 57.143 0.00 0.00 44.89 4.11
581 594 2.136026 GTATGGGGGAATCTCAACCCT 58.864 52.381 0.00 0.00 44.97 4.34
582 595 1.698874 ATGGGGGAATCTCAACCCTT 58.301 50.000 0.00 0.00 44.97 3.95
583 596 2.369668 TGGGGGAATCTCAACCCTTA 57.630 50.000 0.00 0.00 44.97 2.69
584 597 2.871796 TGGGGGAATCTCAACCCTTAT 58.128 47.619 0.00 0.00 44.97 1.73
585 598 2.513738 TGGGGGAATCTCAACCCTTATG 59.486 50.000 0.00 0.00 44.97 1.90
586 599 2.514160 GGGGGAATCTCAACCCTTATGT 59.486 50.000 0.00 0.00 44.97 2.29
587 600 3.555966 GGGGAATCTCAACCCTTATGTG 58.444 50.000 0.00 0.00 44.97 3.21
588 601 3.053619 GGGGAATCTCAACCCTTATGTGT 60.054 47.826 0.00 0.00 44.97 3.72
589 602 4.569865 GGGGAATCTCAACCCTTATGTGTT 60.570 45.833 0.00 0.00 44.97 3.32
590 603 5.016831 GGGAATCTCAACCCTTATGTGTTT 58.983 41.667 0.00 0.00 42.56 2.83
591 604 5.105756 GGGAATCTCAACCCTTATGTGTTTG 60.106 44.000 0.00 0.00 42.56 2.93
592 605 5.710099 GGAATCTCAACCCTTATGTGTTTGA 59.290 40.000 0.00 0.00 0.00 2.69
593 606 6.127897 GGAATCTCAACCCTTATGTGTTTGAG 60.128 42.308 3.70 3.70 0.00 3.02
594 607 5.560722 TCTCAACCCTTATGTGTTTGAGA 57.439 39.130 7.99 7.99 31.95 3.27
595 608 5.551233 TCTCAACCCTTATGTGTTTGAGAG 58.449 41.667 7.99 0.00 31.39 3.20
596 609 5.071788 TCTCAACCCTTATGTGTTTGAGAGT 59.928 40.000 7.99 0.00 31.39 3.24
597 610 5.063204 TCAACCCTTATGTGTTTGAGAGTG 58.937 41.667 0.00 0.00 0.00 3.51
598 611 4.706842 ACCCTTATGTGTTTGAGAGTGT 57.293 40.909 0.00 0.00 0.00 3.55
599 612 5.818678 ACCCTTATGTGTTTGAGAGTGTA 57.181 39.130 0.00 0.00 0.00 2.90
600 613 5.794894 ACCCTTATGTGTTTGAGAGTGTAG 58.205 41.667 0.00 0.00 0.00 2.74
601 614 4.631813 CCCTTATGTGTTTGAGAGTGTAGC 59.368 45.833 0.00 0.00 0.00 3.58
602 615 4.327357 CCTTATGTGTTTGAGAGTGTAGCG 59.673 45.833 0.00 0.00 0.00 4.26
603 616 3.660501 ATGTGTTTGAGAGTGTAGCGA 57.339 42.857 0.00 0.00 0.00 4.93
604 617 3.446310 TGTGTTTGAGAGTGTAGCGAA 57.554 42.857 0.00 0.00 0.00 4.70
605 618 3.787785 TGTGTTTGAGAGTGTAGCGAAA 58.212 40.909 0.00 0.00 0.00 3.46
606 619 3.554324 TGTGTTTGAGAGTGTAGCGAAAC 59.446 43.478 0.00 0.00 0.00 2.78
607 620 3.554324 GTGTTTGAGAGTGTAGCGAAACA 59.446 43.478 0.00 0.00 32.41 2.83
608 621 4.033587 GTGTTTGAGAGTGTAGCGAAACAA 59.966 41.667 0.00 0.00 35.66 2.83
609 622 4.632251 TGTTTGAGAGTGTAGCGAAACAAA 59.368 37.500 0.00 0.00 32.03 2.83
610 623 5.122554 TGTTTGAGAGTGTAGCGAAACAAAA 59.877 36.000 0.00 0.00 32.03 2.44
611 624 5.403897 TTGAGAGTGTAGCGAAACAAAAG 57.596 39.130 0.00 0.00 0.00 2.27
612 625 4.439057 TGAGAGTGTAGCGAAACAAAAGT 58.561 39.130 0.00 0.00 0.00 2.66
613 626 4.270084 TGAGAGTGTAGCGAAACAAAAGTG 59.730 41.667 0.00 0.00 0.00 3.16
614 627 4.189231 AGAGTGTAGCGAAACAAAAGTGT 58.811 39.130 0.00 0.00 40.75 3.55
615 628 4.270325 AGAGTGTAGCGAAACAAAAGTGTC 59.730 41.667 0.00 0.00 36.80 3.67
616 629 4.189231 AGTGTAGCGAAACAAAAGTGTCT 58.811 39.130 0.00 0.00 36.80 3.41
617 630 5.353938 AGTGTAGCGAAACAAAAGTGTCTA 58.646 37.500 0.00 0.00 36.80 2.59
618 631 5.462398 AGTGTAGCGAAACAAAAGTGTCTAG 59.538 40.000 0.00 0.00 36.80 2.43
619 632 4.748102 TGTAGCGAAACAAAAGTGTCTAGG 59.252 41.667 0.00 0.00 36.80 3.02
620 633 2.548480 AGCGAAACAAAAGTGTCTAGGC 59.452 45.455 0.00 0.00 36.80 3.93
642 655 3.320610 TCTAGCCATCTAGGTGAAGCT 57.679 47.619 3.99 8.27 42.01 3.74
646 659 2.436173 AGCCATCTAGGTGAAGCTTACC 59.564 50.000 3.99 7.93 40.61 2.85
701 714 0.319297 ACGTGAAAGCCACCGTACTC 60.319 55.000 0.00 0.00 42.76 2.59
704 717 0.034337 TGAAAGCCACCGTACTCCAC 59.966 55.000 0.00 0.00 0.00 4.02
721 734 1.254026 CACGACTACAGAAGACCCCA 58.746 55.000 0.00 0.00 0.00 4.96
723 736 1.617357 ACGACTACAGAAGACCCCAAC 59.383 52.381 0.00 0.00 0.00 3.77
725 738 2.258109 GACTACAGAAGACCCCAACCT 58.742 52.381 0.00 0.00 0.00 3.50
741 758 5.399038 CCCCAACCTGGATATATGTCAAACT 60.399 44.000 0.00 0.00 40.96 2.66
756 773 4.202295 TGTCAAACTCTGCAATCTGAGACT 60.202 41.667 7.62 0.00 39.71 3.24
757 774 4.754114 GTCAAACTCTGCAATCTGAGACTT 59.246 41.667 7.62 0.00 39.71 3.01
796 813 2.159379 CGCATGCCCCTTTCTAAGAAAC 60.159 50.000 13.15 0.00 0.00 2.78
834 887 3.463505 CGTGAGCAAGCGTACTGG 58.536 61.111 0.00 0.00 0.00 4.00
835 888 2.730672 CGTGAGCAAGCGTACTGGC 61.731 63.158 0.00 0.00 43.94 4.85
854 907 0.586748 CGTCGAGCACTACTAGCACG 60.587 60.000 0.00 0.00 45.25 5.34
855 908 0.447011 GTCGAGCACTACTAGCACGT 59.553 55.000 0.00 0.00 44.45 4.49
856 909 1.662629 GTCGAGCACTACTAGCACGTA 59.337 52.381 0.00 0.00 44.45 3.57
857 910 1.931841 TCGAGCACTACTAGCACGTAG 59.068 52.381 9.96 9.96 44.45 3.51
858 911 1.595003 CGAGCACTACTAGCACGTAGC 60.595 57.143 11.09 0.00 40.36 3.58
896 949 2.102084 TCCTCAATCATTCCGAGAGCTG 59.898 50.000 0.00 0.00 0.00 4.24
897 950 2.158986 CCTCAATCATTCCGAGAGCTGT 60.159 50.000 0.00 0.00 0.00 4.40
898 951 2.864946 CTCAATCATTCCGAGAGCTGTG 59.135 50.000 0.00 0.00 0.00 3.66
911 969 2.645838 AGCTGTGCTCCAGAAAAAGA 57.354 45.000 7.97 0.00 44.49 2.52
925 983 2.001076 AAAAGAAACTGCAGAGGGGG 57.999 50.000 23.35 0.00 0.00 5.40
934 992 2.581354 CAGAGGGGGCGAGAAGTG 59.419 66.667 0.00 0.00 0.00 3.16
939 997 1.901464 GGGGGCGAGAAGTGCAAAA 60.901 57.895 0.00 0.00 0.00 2.44
988 1048 2.100603 CGCCGTCTCCGTCTTCTC 59.899 66.667 0.00 0.00 0.00 2.87
989 1049 2.490685 GCCGTCTCCGTCTTCTCC 59.509 66.667 0.00 0.00 0.00 3.71
990 1050 2.792599 CCGTCTCCGTCTTCTCCG 59.207 66.667 0.00 0.00 0.00 4.63
991 1051 2.762234 CCGTCTCCGTCTTCTCCGG 61.762 68.421 0.00 0.00 46.83 5.14
1008 1068 1.997874 GGTCTCCACCATGGCCTCT 60.998 63.158 13.04 0.00 43.17 3.69
1023 1083 4.752879 TCTTTCGCCGCCCTTCCG 62.753 66.667 0.00 0.00 0.00 4.30
1152 1913 1.301293 CAGGTTCCTCAAGGGCTCC 59.699 63.158 0.00 0.00 35.41 4.70
1383 2176 5.121611 TCAATTTGTTACTACAGGCGACATG 59.878 40.000 0.00 0.00 35.28 3.21
1393 2186 3.686016 ACAGGCGACATGGATTTTAGTT 58.314 40.909 0.00 0.00 0.00 2.24
1405 2198 7.553044 ACATGGATTTTAGTTACCTGTAAGCTC 59.447 37.037 0.00 0.00 0.00 4.09
1436 2229 6.777580 TGATCCTGTGCAGTTATGATCTACTA 59.222 38.462 13.34 0.00 32.00 1.82
1437 2230 6.392625 TCCTGTGCAGTTATGATCTACTAC 57.607 41.667 0.00 0.00 0.00 2.73
1438 2231 6.129874 TCCTGTGCAGTTATGATCTACTACT 58.870 40.000 0.00 0.00 0.00 2.57
1439 2232 6.039829 TCCTGTGCAGTTATGATCTACTACTG 59.960 42.308 11.14 11.14 39.29 2.74
1441 2234 7.013369 CCTGTGCAGTTATGATCTACTACTGTA 59.987 40.741 14.67 10.18 38.70 2.74
1443 2236 8.914011 TGTGCAGTTATGATCTACTACTGTATT 58.086 33.333 14.67 0.00 38.70 1.89
1469 2265 9.088987 TCTAGTAGCAACATGGATATTATGTGA 57.911 33.333 0.00 0.00 38.67 3.58
1512 2308 9.144747 GATGATACGGATGATAATATGCATACC 57.855 37.037 8.99 2.86 0.00 2.73
1540 2336 6.413892 ACATGTGTGATATGTGTGAATGGTA 58.586 36.000 0.00 0.00 37.38 3.25
1541 2337 7.056006 ACATGTGTGATATGTGTGAATGGTAT 58.944 34.615 0.00 0.00 37.38 2.73
1542 2338 8.210265 ACATGTGTGATATGTGTGAATGGTATA 58.790 33.333 0.00 0.00 37.38 1.47
1543 2339 8.498358 CATGTGTGATATGTGTGAATGGTATAC 58.502 37.037 0.00 0.00 0.00 1.47
1544 2340 7.560368 TGTGTGATATGTGTGAATGGTATACA 58.440 34.615 5.01 0.00 0.00 2.29
1578 2374 2.365293 GCCATTTCTGTTCTGGTTTGGT 59.635 45.455 0.00 0.00 32.42 3.67
1581 2377 1.398692 TTCTGTTCTGGTTTGGTGCC 58.601 50.000 0.00 0.00 0.00 5.01
1596 2392 4.115199 GCCAAGCCCCGGATCTGT 62.115 66.667 0.73 0.00 0.00 3.41
1602 2398 1.201429 AGCCCCGGATCTGTGTCTTT 61.201 55.000 0.73 0.00 0.00 2.52
1747 2543 2.190313 GCCATCGCAGGGTCATCA 59.810 61.111 0.00 0.00 34.03 3.07
1873 2679 5.006153 TGAATATCTGTCCACCTTGTACG 57.994 43.478 0.00 0.00 0.00 3.67
1874 2680 4.142026 TGAATATCTGTCCACCTTGTACGG 60.142 45.833 0.00 0.00 0.00 4.02
1880 2713 3.021695 TGTCCACCTTGTACGGATAGAG 58.978 50.000 0.00 0.00 0.00 2.43
1924 2757 1.954382 GTCAAACCAGTGACCTTTCCC 59.046 52.381 0.00 0.00 41.79 3.97
1929 2762 3.108847 ACCAGTGACCTTTCCCAAAAA 57.891 42.857 0.00 0.00 0.00 1.94
1974 2808 9.646427 TGAAAATACAAAATAGGCATGGTTTAC 57.354 29.630 0.00 0.00 0.00 2.01
2030 2865 1.860950 CTTCAATGTAGGCGATGACGG 59.139 52.381 0.00 0.00 40.15 4.79
2054 2897 0.598065 GATGGTGTCTTGTGCCCAAC 59.402 55.000 0.00 0.00 0.00 3.77
2077 2920 4.536364 CACGTTCAGTGTGTTTGAAGAT 57.464 40.909 0.00 0.00 45.51 2.40
2084 2927 3.504906 CAGTGTGTTTGAAGATCAGGCAT 59.495 43.478 0.00 0.00 0.00 4.40
2085 2928 3.504906 AGTGTGTTTGAAGATCAGGCATG 59.495 43.478 0.00 0.00 0.00 4.06
2170 3013 3.498774 ATCATATCCCACACAGCCTTC 57.501 47.619 0.00 0.00 0.00 3.46
2225 3068 1.130054 TGCCCAGAAAGAGCTCCAGT 61.130 55.000 10.93 0.00 0.00 4.00
2276 3119 4.660303 TGCAGATACCAGGATTCAGGTAAT 59.340 41.667 0.00 0.00 43.14 1.89
2279 3122 6.390721 CAGATACCAGGATTCAGGTAATACG 58.609 44.000 0.00 0.00 43.14 3.06
2280 3123 6.015350 CAGATACCAGGATTCAGGTAATACGT 60.015 42.308 0.00 0.00 43.14 3.57
2281 3124 7.176165 CAGATACCAGGATTCAGGTAATACGTA 59.824 40.741 0.00 0.00 43.14 3.57
2329 3231 4.015084 CCTGCAGGATGAGAAGTTCATTT 58.985 43.478 29.88 0.00 46.51 2.32
2332 3234 4.263639 TGCAGGATGAGAAGTTCATTTCCT 60.264 41.667 5.50 9.72 46.51 3.36
2333 3235 4.335037 GCAGGATGAGAAGTTCATTTCCTC 59.665 45.833 14.29 8.49 46.51 3.71
2334 3236 4.569966 CAGGATGAGAAGTTCATTTCCTCG 59.430 45.833 14.29 8.91 46.51 4.63
2335 3237 4.467795 AGGATGAGAAGTTCATTTCCTCGA 59.532 41.667 5.50 0.00 46.51 4.04
2336 3238 5.046304 AGGATGAGAAGTTCATTTCCTCGAA 60.046 40.000 5.50 0.00 46.51 3.71
2339 3241 4.393062 TGAGAAGTTCATTTCCTCGAATGC 59.607 41.667 5.50 0.00 37.03 3.56
2340 3242 4.326826 AGAAGTTCATTTCCTCGAATGCA 58.673 39.130 5.50 0.00 37.03 3.96
2341 3243 4.154918 AGAAGTTCATTTCCTCGAATGCAC 59.845 41.667 5.50 0.00 37.03 4.57
2342 3244 3.411446 AGTTCATTTCCTCGAATGCACA 58.589 40.909 0.00 0.00 36.19 4.57
2343 3245 4.012374 AGTTCATTTCCTCGAATGCACAT 58.988 39.130 0.00 0.00 36.19 3.21
2345 3247 2.945008 TCATTTCCTCGAATGCACATCC 59.055 45.455 0.00 0.00 37.03 3.51
2346 3248 2.488204 TTTCCTCGAATGCACATCCA 57.512 45.000 0.00 0.00 0.00 3.41
2347 3249 2.715749 TTCCTCGAATGCACATCCAT 57.284 45.000 0.00 0.00 0.00 3.41
2348 3250 2.715749 TCCTCGAATGCACATCCATT 57.284 45.000 0.00 0.00 38.09 3.16
2350 3252 2.684374 TCCTCGAATGCACATCCATTTG 59.316 45.455 0.00 0.00 37.75 2.32
2351 3253 2.223641 CCTCGAATGCACATCCATTTGG 60.224 50.000 0.00 0.00 37.26 3.28
2352 3254 1.134753 TCGAATGCACATCCATTTGGC 59.865 47.619 0.00 0.00 37.26 4.52
2353 3255 1.135527 CGAATGCACATCCATTTGGCT 59.864 47.619 0.00 0.00 35.67 4.75
2355 3257 1.855295 ATGCACATCCATTTGGCTCA 58.145 45.000 0.00 0.00 34.44 4.26
2356 3258 0.889994 TGCACATCCATTTGGCTCAC 59.110 50.000 0.00 0.00 34.44 3.51
2357 3259 1.180029 GCACATCCATTTGGCTCACT 58.820 50.000 0.00 0.00 34.44 3.41
2363 3265 4.702131 ACATCCATTTGGCTCACTTAACTC 59.298 41.667 0.00 0.00 34.44 3.01
2365 3267 2.420022 CCATTTGGCTCACTTAACTCCG 59.580 50.000 0.00 0.00 0.00 4.63
2381 3283 8.095169 ACTTAACTCCGTATGTTCTTTTGAGAT 58.905 33.333 0.00 0.00 0.00 2.75
2382 3284 8.842358 TTAACTCCGTATGTTCTTTTGAGATT 57.158 30.769 0.00 0.00 0.00 2.40
2388 3290 8.421784 TCCGTATGTTCTTTTGAGATTAGCTAT 58.578 33.333 0.00 0.00 0.00 2.97
2399 3301 4.164030 TGAGATTAGCTATCTGCCCACAAA 59.836 41.667 9.53 0.00 43.75 2.83
2410 3312 3.075283 TCTGCCCACAAAAAGGAATAGGA 59.925 43.478 0.00 0.00 0.00 2.94
2411 3313 3.430453 TGCCCACAAAAAGGAATAGGAG 58.570 45.455 0.00 0.00 0.00 3.69
2470 3372 2.733127 CGTGTCATAAACTCGCGGT 58.267 52.632 6.13 0.00 37.96 5.68
2493 3395 1.524863 CGTCGAAGGGGAGCGGATAT 61.525 60.000 0.00 0.00 0.00 1.63
2502 3404 2.427506 GGGAGCGGATATGGAAATGAC 58.572 52.381 0.00 0.00 0.00 3.06
2508 3410 4.348168 AGCGGATATGGAAATGACCTACTT 59.652 41.667 0.00 0.00 0.00 2.24
2525 3427 4.218417 CCTACTTGGTTTGATGTTTGAGGG 59.782 45.833 0.00 0.00 0.00 4.30
2532 3434 0.111061 TGATGTTTGAGGGCTGCACT 59.889 50.000 2.85 2.85 0.00 4.40
2535 3437 0.602638 TGTTTGAGGGCTGCACTACG 60.603 55.000 3.40 0.00 0.00 3.51
2540 3442 1.878656 GAGGGCTGCACTACGACAGT 61.879 60.000 3.40 0.00 38.32 3.55
2556 3458 3.688159 GTGCAAGGGGGCAAGCAG 61.688 66.667 0.00 0.00 46.93 4.24
2580 3482 1.941294 CAGCTAAGCTTGAGCATGGAG 59.059 52.381 21.88 7.28 45.16 3.86
2604 3506 2.605837 TCCTACACGAGTGCAAAACA 57.394 45.000 2.76 0.00 0.00 2.83
2616 3518 2.726241 GTGCAAAACATTCTTCTTCGCC 59.274 45.455 0.00 0.00 0.00 5.54
2635 3537 0.022853 CGGTTACGAAACGACATCGC 59.977 55.000 0.14 0.00 43.88 4.58
2796 3699 7.930865 TCAAAAACCAACCCTTATCTTGATTTG 59.069 33.333 0.00 0.00 0.00 2.32
2866 3778 0.594028 GACGCTCATGCATGCAATGG 60.594 55.000 26.68 17.10 46.86 3.16
2878 3790 4.213694 TGCATGCAATGGAAATTTCAACAC 59.786 37.500 20.30 3.11 43.62 3.32
2918 3830 4.014406 ACATGACATGTGTTGCAGATGAT 58.986 39.130 20.21 0.00 43.01 2.45
3060 3972 1.152694 CCCATTCATGCACCGGGAT 60.153 57.895 6.32 0.00 39.44 3.85
3063 3975 2.305928 CCATTCATGCACCGGGATAAA 58.694 47.619 6.32 0.00 0.00 1.40
3224 4136 1.463674 GAAGCCAAATCCGTGATGGT 58.536 50.000 0.00 0.00 39.52 3.55
3340 4252 3.717707 GTCGTTATGAAGCTGCTGGATA 58.282 45.455 1.35 0.00 0.00 2.59
3357 4269 4.331968 TGGATATATGAAATGGAACCGGC 58.668 43.478 0.00 0.00 0.00 6.13
3465 4386 8.776470 CAAATTAAGGTTGGAAAAGTAGTACGA 58.224 33.333 0.00 0.00 0.00 3.43
3466 4387 9.511272 AAATTAAGGTTGGAAAAGTAGTACGAT 57.489 29.630 0.00 0.00 0.00 3.73
3471 4400 7.444299 AGGTTGGAAAAGTAGTACGATTACAA 58.556 34.615 12.19 12.19 0.00 2.41
3492 4421 7.116075 ACAAGAAAATATATTGCATGTGGCT 57.884 32.000 0.00 0.00 45.15 4.75
3508 4437 1.227853 GCTTGACCACCCGTCTGTT 60.228 57.895 0.00 0.00 42.49 3.16
3517 4446 0.889186 ACCCGTCTGTTTGCATGGAC 60.889 55.000 0.00 0.00 0.00 4.02
3531 4460 4.574892 TGCATGGACAGTCTAATTTTCGA 58.425 39.130 0.00 0.00 0.00 3.71
3558 4487 1.000896 GCCTCCTGCCTTGCCTTTA 60.001 57.895 0.00 0.00 0.00 1.85
3561 4490 1.685148 CTCCTGCCTTGCCTTTATCC 58.315 55.000 0.00 0.00 0.00 2.59
3575 4504 5.606749 TGCCTTTATCCCTAAGCTGAATCTA 59.393 40.000 0.00 0.00 0.00 1.98
3583 4512 4.646945 CCCTAAGCTGAATCTACTCAGACA 59.353 45.833 4.81 0.00 44.82 3.41
3587 4516 3.446873 AGCTGAATCTACTCAGACACCTG 59.553 47.826 4.81 0.00 44.82 4.00
3588 4517 3.779759 CTGAATCTACTCAGACACCTGC 58.220 50.000 0.00 0.00 44.82 4.85
3592 4521 0.457509 CTACTCAGACACCTGCTGCG 60.458 60.000 0.00 0.00 40.20 5.18
3619 4548 0.318614 CACCGTTGTGGATGGTTTGC 60.319 55.000 0.00 0.00 45.67 3.68
3622 4551 0.039256 CGTTGTGGATGGTTTGCTGG 60.039 55.000 0.00 0.00 0.00 4.85
3666 4595 0.040603 GCCATAGCTTTCTCATGCGC 60.041 55.000 0.00 0.00 35.50 6.09
3667 4596 0.234106 CCATAGCTTTCTCATGCGCG 59.766 55.000 0.00 0.00 0.00 6.86
3668 4597 1.211743 CATAGCTTTCTCATGCGCGA 58.788 50.000 12.10 0.00 0.00 5.87
3669 4598 1.797046 CATAGCTTTCTCATGCGCGAT 59.203 47.619 12.10 0.00 0.00 4.58
3670 4599 1.939974 TAGCTTTCTCATGCGCGATT 58.060 45.000 12.10 0.00 0.00 3.34
3671 4600 0.376152 AGCTTTCTCATGCGCGATTG 59.624 50.000 12.10 6.30 0.00 2.67
3672 4601 0.097674 GCTTTCTCATGCGCGATTGT 59.902 50.000 12.10 0.00 0.00 2.71
3673 4602 1.806511 CTTTCTCATGCGCGATTGTG 58.193 50.000 12.10 7.39 0.00 3.33
3674 4603 1.129251 CTTTCTCATGCGCGATTGTGT 59.871 47.619 12.10 0.00 0.00 3.72
3675 4604 2.003196 TTCTCATGCGCGATTGTGTA 57.997 45.000 12.10 0.00 0.00 2.90
3676 4605 2.003196 TCTCATGCGCGATTGTGTAA 57.997 45.000 12.10 0.00 0.00 2.41
3677 4606 1.658596 TCTCATGCGCGATTGTGTAAC 59.341 47.619 12.10 0.00 37.35 2.50
3678 4607 0.724549 TCATGCGCGATTGTGTAACC 59.275 50.000 12.10 0.00 34.36 2.85
3679 4608 0.586256 CATGCGCGATTGTGTAACCG 60.586 55.000 12.10 0.00 34.36 4.44
3680 4609 1.017177 ATGCGCGATTGTGTAACCGT 61.017 50.000 12.10 0.00 34.36 4.83
3681 4610 0.388263 TGCGCGATTGTGTAACCGTA 60.388 50.000 12.10 0.00 34.36 4.02
3682 4611 0.714994 GCGCGATTGTGTAACCGTAA 59.285 50.000 12.10 0.00 34.36 3.18
3683 4612 1.266696 GCGCGATTGTGTAACCGTAAG 60.267 52.381 12.10 0.00 34.36 2.34
3684 4613 1.266696 CGCGATTGTGTAACCGTAAGC 60.267 52.381 0.00 0.00 34.36 3.09
3685 4614 1.061566 GCGATTGTGTAACCGTAAGCC 59.938 52.381 0.00 0.00 34.36 4.35
3686 4615 2.339418 CGATTGTGTAACCGTAAGCCA 58.661 47.619 0.00 0.00 34.36 4.75
3687 4616 2.933906 CGATTGTGTAACCGTAAGCCAT 59.066 45.455 0.00 0.00 34.36 4.40
3688 4617 3.372822 CGATTGTGTAACCGTAAGCCATT 59.627 43.478 0.00 0.00 34.36 3.16
3689 4618 4.142773 CGATTGTGTAACCGTAAGCCATTT 60.143 41.667 0.00 0.00 34.36 2.32
3690 4619 4.752661 TTGTGTAACCGTAAGCCATTTC 57.247 40.909 0.00 0.00 34.36 2.17
3691 4620 3.075884 TGTGTAACCGTAAGCCATTTCC 58.924 45.455 0.00 0.00 34.36 3.13
3692 4621 2.421073 GTGTAACCGTAAGCCATTTCCC 59.579 50.000 0.00 0.00 0.00 3.97
3693 4622 2.019249 GTAACCGTAAGCCATTTCCCC 58.981 52.381 0.00 0.00 0.00 4.81
3694 4623 0.323999 AACCGTAAGCCATTTCCCCC 60.324 55.000 0.00 0.00 0.00 5.40
3695 4624 1.304952 CCGTAAGCCATTTCCCCCA 59.695 57.895 0.00 0.00 0.00 4.96
3696 4625 1.035385 CCGTAAGCCATTTCCCCCAC 61.035 60.000 0.00 0.00 0.00 4.61
3697 4626 0.322997 CGTAAGCCATTTCCCCCACA 60.323 55.000 0.00 0.00 0.00 4.17
3698 4627 1.182667 GTAAGCCATTTCCCCCACAC 58.817 55.000 0.00 0.00 0.00 3.82
3699 4628 0.322997 TAAGCCATTTCCCCCACACG 60.323 55.000 0.00 0.00 0.00 4.49
3700 4629 2.034999 GCCATTTCCCCCACACGA 59.965 61.111 0.00 0.00 0.00 4.35
3701 4630 2.046285 GCCATTTCCCCCACACGAG 61.046 63.158 0.00 0.00 0.00 4.18
3702 4631 2.046285 CCATTTCCCCCACACGAGC 61.046 63.158 0.00 0.00 0.00 5.03
3703 4632 2.046314 ATTTCCCCCACACGAGCG 60.046 61.111 0.00 0.00 0.00 5.03
3704 4633 2.589157 ATTTCCCCCACACGAGCGA 61.589 57.895 0.00 0.00 0.00 4.93
3705 4634 2.119484 ATTTCCCCCACACGAGCGAA 62.119 55.000 0.00 0.00 0.00 4.70
3706 4635 2.326773 TTTCCCCCACACGAGCGAAA 62.327 55.000 0.00 0.00 0.00 3.46
3707 4636 2.725203 TTCCCCCACACGAGCGAAAG 62.725 60.000 0.00 0.00 0.00 2.62
3723 4652 3.578688 CGAAAGCCAAGATTCCAAAAGG 58.421 45.455 0.00 0.00 0.00 3.11
3724 4653 3.614870 CGAAAGCCAAGATTCCAAAAGGG 60.615 47.826 0.00 0.00 38.37 3.95
3725 4654 2.702270 AGCCAAGATTCCAAAAGGGT 57.298 45.000 0.00 0.00 38.11 4.34
3726 4655 2.529632 AGCCAAGATTCCAAAAGGGTC 58.470 47.619 0.00 0.00 38.11 4.46
3727 4656 1.202348 GCCAAGATTCCAAAAGGGTCG 59.798 52.381 0.00 0.00 38.11 4.79
3728 4657 2.514803 CCAAGATTCCAAAAGGGTCGT 58.485 47.619 0.00 0.00 38.11 4.34
3729 4658 3.681593 CCAAGATTCCAAAAGGGTCGTA 58.318 45.455 0.00 0.00 38.11 3.43
3730 4659 3.689649 CCAAGATTCCAAAAGGGTCGTAG 59.310 47.826 0.00 0.00 38.11 3.51
3731 4660 4.564821 CCAAGATTCCAAAAGGGTCGTAGA 60.565 45.833 0.00 0.00 38.11 2.59
3732 4661 4.903045 AGATTCCAAAAGGGTCGTAGAA 57.097 40.909 0.00 0.00 39.69 2.10
3733 4662 5.437191 AGATTCCAAAAGGGTCGTAGAAT 57.563 39.130 0.00 0.00 39.69 2.40
3734 4663 5.816682 AGATTCCAAAAGGGTCGTAGAATT 58.183 37.500 0.00 0.00 39.69 2.17
3735 4664 6.246163 AGATTCCAAAAGGGTCGTAGAATTT 58.754 36.000 0.00 0.00 39.69 1.82
3736 4665 5.699097 TTCCAAAAGGGTCGTAGAATTTG 57.301 39.130 0.00 0.00 39.69 2.32
3737 4666 4.975631 TCCAAAAGGGTCGTAGAATTTGA 58.024 39.130 0.00 0.00 39.69 2.69
3738 4667 5.378332 TCCAAAAGGGTCGTAGAATTTGAA 58.622 37.500 0.00 0.00 39.69 2.69
3739 4668 5.828859 TCCAAAAGGGTCGTAGAATTTGAAA 59.171 36.000 0.00 0.00 39.69 2.69
3740 4669 6.016610 TCCAAAAGGGTCGTAGAATTTGAAAG 60.017 38.462 0.00 0.00 39.69 2.62
3741 4670 5.372547 AAAGGGTCGTAGAATTTGAAAGC 57.627 39.130 0.00 0.00 39.69 3.51
3742 4671 3.344515 AGGGTCGTAGAATTTGAAAGCC 58.655 45.455 0.00 0.00 39.69 4.35
3743 4672 3.078837 GGGTCGTAGAATTTGAAAGCCA 58.921 45.455 0.00 0.00 39.69 4.75
3744 4673 3.127030 GGGTCGTAGAATTTGAAAGCCAG 59.873 47.826 0.00 0.00 39.69 4.85
3745 4674 3.751698 GGTCGTAGAATTTGAAAGCCAGT 59.248 43.478 0.00 0.00 39.69 4.00
3746 4675 4.215613 GGTCGTAGAATTTGAAAGCCAGTT 59.784 41.667 0.00 0.00 39.69 3.16
3747 4676 5.278315 GGTCGTAGAATTTGAAAGCCAGTTT 60.278 40.000 0.00 0.00 39.69 2.66
3748 4677 6.072893 GGTCGTAGAATTTGAAAGCCAGTTTA 60.073 38.462 0.00 0.00 39.69 2.01
3749 4678 7.361799 GGTCGTAGAATTTGAAAGCCAGTTTAT 60.362 37.037 0.00 0.00 39.69 1.40
3750 4679 7.481798 GTCGTAGAATTTGAAAGCCAGTTTATG 59.518 37.037 0.00 0.00 39.69 1.90
3798 4728 2.729479 CCGCCTCTGCATCTGGACT 61.729 63.158 4.26 0.00 37.32 3.85
3859 4789 8.821147 ATCGTACAAAGTCATACAACAGTAAA 57.179 30.769 0.00 0.00 0.00 2.01
3891 4821 3.388024 ACCATCTAGGCAACATATGTCGT 59.612 43.478 9.23 1.99 43.14 4.34
3931 4861 2.134287 GGGGCGCTGATAGTCTGGA 61.134 63.158 7.64 0.00 0.00 3.86
3943 4873 6.517529 GCTGATAGTCTGGACCTAATACCAAG 60.518 46.154 0.00 0.00 35.67 3.61
3947 4877 3.197983 GTCTGGACCTAATACCAAGCAGT 59.802 47.826 0.00 0.00 35.67 4.40
4039 4969 1.194781 AGTCCGGCACACTCCTCAAT 61.195 55.000 0.00 0.00 0.00 2.57
4118 5048 1.200020 GTTGTACTGCTGCATCAACCC 59.800 52.381 22.59 9.16 34.31 4.11
4131 5061 3.175710 AACCCTGCCCGGTCTTGT 61.176 61.111 0.00 0.00 33.98 3.16
4133 5063 2.359975 CCCTGCCCGGTCTTGTTC 60.360 66.667 0.00 0.00 0.00 3.18
4213 5143 0.952280 ATCCGTCGTCGATATGCAGT 59.048 50.000 2.98 0.00 39.71 4.40
4218 5148 3.853760 CGTCGTCGATATGCAGTTGCAA 61.854 50.000 11.23 0.00 46.71 4.08
4335 5265 1.161113 ACCACCCCTAGCACCTCTT 59.839 57.895 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
479 492 5.492895 TGCAACGGGAGAGATATTTTTACA 58.507 37.500 0.00 0.00 0.00 2.41
481 494 6.431198 GTTGCAACGGGAGAGATATTTTTA 57.569 37.500 14.90 0.00 0.00 1.52
530 543 2.752903 GCCAGGGACACGATTGTTTTAT 59.247 45.455 0.00 0.00 35.47 1.40
536 549 1.875963 GTTGCCAGGGACACGATTG 59.124 57.895 0.00 0.00 0.00 2.67
537 550 1.671054 CGTTGCCAGGGACACGATT 60.671 57.895 9.16 0.00 0.00 3.34
538 551 2.047274 CGTTGCCAGGGACACGAT 60.047 61.111 9.16 0.00 0.00 3.73
539 552 2.709125 CTTCGTTGCCAGGGACACGA 62.709 60.000 12.21 12.21 0.00 4.35
540 553 2.280524 TTCGTTGCCAGGGACACG 60.281 61.111 8.67 8.67 0.00 4.49
541 554 1.966451 CCTTCGTTGCCAGGGACAC 60.966 63.158 0.00 0.00 0.00 3.67
542 555 2.429930 CCTTCGTTGCCAGGGACA 59.570 61.111 0.00 0.00 0.00 4.02
546 559 0.748005 CATACCCCTTCGTTGCCAGG 60.748 60.000 0.00 0.00 0.00 4.45
547 560 0.748005 CCATACCCCTTCGTTGCCAG 60.748 60.000 0.00 0.00 0.00 4.85
548 561 1.301623 CCATACCCCTTCGTTGCCA 59.698 57.895 0.00 0.00 0.00 4.92
549 562 1.453197 CCCATACCCCTTCGTTGCC 60.453 63.158 0.00 0.00 0.00 4.52
550 563 1.453197 CCCCATACCCCTTCGTTGC 60.453 63.158 0.00 0.00 0.00 4.17
551 564 1.226262 CCCCCATACCCCTTCGTTG 59.774 63.158 0.00 0.00 0.00 4.10
552 565 0.550638 TTCCCCCATACCCCTTCGTT 60.551 55.000 0.00 0.00 0.00 3.85
553 566 0.328158 ATTCCCCCATACCCCTTCGT 60.328 55.000 0.00 0.00 0.00 3.85
554 567 0.400594 GATTCCCCCATACCCCTTCG 59.599 60.000 0.00 0.00 0.00 3.79
555 568 1.705745 GAGATTCCCCCATACCCCTTC 59.294 57.143 0.00 0.00 0.00 3.46
556 569 1.012049 TGAGATTCCCCCATACCCCTT 59.988 52.381 0.00 0.00 0.00 3.95
557 570 0.653397 TGAGATTCCCCCATACCCCT 59.347 55.000 0.00 0.00 0.00 4.79
558 571 1.145119 GTTGAGATTCCCCCATACCCC 59.855 57.143 0.00 0.00 0.00 4.95
559 572 1.145119 GGTTGAGATTCCCCCATACCC 59.855 57.143 0.00 0.00 0.00 3.69
560 573 1.145119 GGGTTGAGATTCCCCCATACC 59.855 57.143 0.00 0.00 37.89 2.73
561 574 2.136026 AGGGTTGAGATTCCCCCATAC 58.864 52.381 0.00 0.00 44.40 2.39
562 575 2.605825 AGGGTTGAGATTCCCCCATA 57.394 50.000 0.00 0.00 44.40 2.74
563 576 1.698874 AAGGGTTGAGATTCCCCCAT 58.301 50.000 0.00 0.00 44.40 4.00
564 577 2.369668 TAAGGGTTGAGATTCCCCCA 57.630 50.000 0.00 0.00 44.40 4.96
565 578 2.514160 ACATAAGGGTTGAGATTCCCCC 59.486 50.000 0.00 0.00 44.40 5.40
566 579 3.053619 ACACATAAGGGTTGAGATTCCCC 60.054 47.826 0.00 0.00 44.40 4.81
567 580 4.236527 ACACATAAGGGTTGAGATTCCC 57.763 45.455 0.00 0.00 43.71 3.97
568 581 5.710099 TCAAACACATAAGGGTTGAGATTCC 59.290 40.000 0.00 0.00 0.00 3.01
569 582 6.655003 TCTCAAACACATAAGGGTTGAGATTC 59.345 38.462 16.45 0.00 32.01 2.52
570 583 6.542821 TCTCAAACACATAAGGGTTGAGATT 58.457 36.000 16.45 0.00 32.01 2.40
571 584 6.126863 TCTCAAACACATAAGGGTTGAGAT 57.873 37.500 16.45 0.00 32.01 2.75
572 585 5.071788 ACTCTCAAACACATAAGGGTTGAGA 59.928 40.000 18.56 18.56 33.89 3.27
573 586 5.180117 CACTCTCAAACACATAAGGGTTGAG 59.820 44.000 12.67 12.67 0.00 3.02
574 587 5.063204 CACTCTCAAACACATAAGGGTTGA 58.937 41.667 0.00 0.00 0.00 3.18
575 588 4.821805 ACACTCTCAAACACATAAGGGTTG 59.178 41.667 0.00 0.00 0.00 3.77
576 589 5.048846 ACACTCTCAAACACATAAGGGTT 57.951 39.130 0.00 0.00 0.00 4.11
577 590 4.706842 ACACTCTCAAACACATAAGGGT 57.293 40.909 0.00 0.00 0.00 4.34
578 591 4.631813 GCTACACTCTCAAACACATAAGGG 59.368 45.833 0.00 0.00 0.00 3.95
579 592 4.327357 CGCTACACTCTCAAACACATAAGG 59.673 45.833 0.00 0.00 0.00 2.69
580 593 5.161358 TCGCTACACTCTCAAACACATAAG 58.839 41.667 0.00 0.00 0.00 1.73
581 594 5.128992 TCGCTACACTCTCAAACACATAA 57.871 39.130 0.00 0.00 0.00 1.90
582 595 4.776795 TCGCTACACTCTCAAACACATA 57.223 40.909 0.00 0.00 0.00 2.29
583 596 3.660501 TCGCTACACTCTCAAACACAT 57.339 42.857 0.00 0.00 0.00 3.21
584 597 3.446310 TTCGCTACACTCTCAAACACA 57.554 42.857 0.00 0.00 0.00 3.72
585 598 3.554324 TGTTTCGCTACACTCTCAAACAC 59.446 43.478 0.00 0.00 30.70 3.32
586 599 3.787785 TGTTTCGCTACACTCTCAAACA 58.212 40.909 0.00 0.00 32.68 2.83
587 600 4.789095 TTGTTTCGCTACACTCTCAAAC 57.211 40.909 0.00 0.00 0.00 2.93
588 601 5.353123 ACTTTTGTTTCGCTACACTCTCAAA 59.647 36.000 0.00 0.00 0.00 2.69
589 602 4.873827 ACTTTTGTTTCGCTACACTCTCAA 59.126 37.500 0.00 0.00 0.00 3.02
590 603 4.270084 CACTTTTGTTTCGCTACACTCTCA 59.730 41.667 0.00 0.00 0.00 3.27
591 604 4.270325 ACACTTTTGTTTCGCTACACTCTC 59.730 41.667 0.00 0.00 28.43 3.20
592 605 4.189231 ACACTTTTGTTTCGCTACACTCT 58.811 39.130 0.00 0.00 28.43 3.24
593 606 4.270325 AGACACTTTTGTTTCGCTACACTC 59.730 41.667 0.00 0.00 35.47 3.51
594 607 4.189231 AGACACTTTTGTTTCGCTACACT 58.811 39.130 0.00 0.00 35.47 3.55
595 608 4.531659 AGACACTTTTGTTTCGCTACAC 57.468 40.909 0.00 0.00 35.47 2.90
596 609 4.748102 CCTAGACACTTTTGTTTCGCTACA 59.252 41.667 0.00 0.00 35.47 2.74
597 610 4.377124 GCCTAGACACTTTTGTTTCGCTAC 60.377 45.833 0.00 0.00 35.47 3.58
598 611 3.744426 GCCTAGACACTTTTGTTTCGCTA 59.256 43.478 0.00 0.00 35.47 4.26
599 612 2.548480 GCCTAGACACTTTTGTTTCGCT 59.452 45.455 0.00 0.00 35.47 4.93
600 613 2.289547 TGCCTAGACACTTTTGTTTCGC 59.710 45.455 0.00 0.00 35.47 4.70
601 614 4.452455 AGATGCCTAGACACTTTTGTTTCG 59.548 41.667 0.00 0.00 35.47 3.46
602 615 5.948992 AGATGCCTAGACACTTTTGTTTC 57.051 39.130 0.00 0.00 35.47 2.78
603 616 5.412904 GCTAGATGCCTAGACACTTTTGTTT 59.587 40.000 0.00 0.00 44.00 2.83
604 617 4.938226 GCTAGATGCCTAGACACTTTTGTT 59.062 41.667 0.00 0.00 44.00 2.83
605 618 4.508662 GCTAGATGCCTAGACACTTTTGT 58.491 43.478 0.00 0.00 44.00 2.83
619 632 3.864160 GCTTCACCTAGATGGCTAGATGC 60.864 52.174 0.00 0.00 45.71 3.91
620 633 3.577848 AGCTTCACCTAGATGGCTAGATG 59.422 47.826 0.00 0.00 45.71 2.90
642 655 3.254411 TCACTTGATTTGCATTGCGGTAA 59.746 39.130 3.84 0.00 0.00 2.85
646 659 2.406024 GTGTCACTTGATTTGCATTGCG 59.594 45.455 3.84 0.00 0.00 4.85
701 714 0.531200 GGGGTCTTCTGTAGTCGTGG 59.469 60.000 0.00 0.00 0.00 4.94
704 717 1.067071 GGTTGGGGTCTTCTGTAGTCG 60.067 57.143 0.00 0.00 0.00 4.18
714 727 3.910627 GACATATATCCAGGTTGGGGTCT 59.089 47.826 0.00 0.00 38.32 3.85
721 734 6.058183 GCAGAGTTTGACATATATCCAGGTT 58.942 40.000 0.00 0.00 0.00 3.50
723 736 5.614308 TGCAGAGTTTGACATATATCCAGG 58.386 41.667 0.00 0.00 0.00 4.45
725 738 7.443272 CAGATTGCAGAGTTTGACATATATCCA 59.557 37.037 0.00 0.00 0.00 3.41
757 774 4.511617 TGCGGTGCATTATTCAGAAAAA 57.488 36.364 0.00 0.00 31.71 1.94
779 796 1.530323 GCGTTTCTTAGAAAGGGGCA 58.470 50.000 23.14 0.00 0.00 5.36
828 881 0.522915 GTAGTGCTCGACGCCAGTAC 60.523 60.000 13.68 13.68 38.05 2.73
829 882 0.675837 AGTAGTGCTCGACGCCAGTA 60.676 55.000 4.73 0.00 38.05 2.74
830 883 0.675837 TAGTAGTGCTCGACGCCAGT 60.676 55.000 4.73 0.00 38.05 4.00
831 884 0.028242 CTAGTAGTGCTCGACGCCAG 59.972 60.000 4.73 0.00 38.05 4.85
832 885 1.989966 GCTAGTAGTGCTCGACGCCA 61.990 60.000 0.00 0.00 38.05 5.69
833 886 1.298488 GCTAGTAGTGCTCGACGCC 60.298 63.158 0.00 0.00 38.05 5.68
834 887 0.862283 GTGCTAGTAGTGCTCGACGC 60.862 60.000 0.00 0.58 39.77 5.19
835 888 0.586748 CGTGCTAGTAGTGCTCGACG 60.587 60.000 4.53 0.00 46.10 5.12
836 889 0.447011 ACGTGCTAGTAGTGCTCGAC 59.553 55.000 15.18 0.00 46.10 4.20
837 890 1.931841 CTACGTGCTAGTAGTGCTCGA 59.068 52.381 15.18 0.00 46.10 4.04
851 904 1.153745 GCTGTGGGAGAGCTACGTG 60.154 63.158 0.00 0.00 33.37 4.49
854 907 1.219393 GTGGCTGTGGGAGAGCTAC 59.781 63.158 0.00 0.00 40.21 3.58
855 908 1.229177 TGTGGCTGTGGGAGAGCTA 60.229 57.895 0.00 0.00 36.63 3.32
856 909 2.527624 TGTGGCTGTGGGAGAGCT 60.528 61.111 0.00 0.00 36.63 4.09
857 910 2.359230 GTGTGGCTGTGGGAGAGC 60.359 66.667 0.00 0.00 35.57 4.09
858 911 1.294780 GAGTGTGGCTGTGGGAGAG 59.705 63.158 0.00 0.00 0.00 3.20
896 949 3.181487 TGCAGTTTCTTTTTCTGGAGCAC 60.181 43.478 0.00 0.00 0.00 4.40
897 950 3.023119 TGCAGTTTCTTTTTCTGGAGCA 58.977 40.909 0.00 0.00 0.00 4.26
898 951 3.316308 TCTGCAGTTTCTTTTTCTGGAGC 59.684 43.478 14.67 0.00 43.71 4.70
901 954 3.005155 CCCTCTGCAGTTTCTTTTTCTGG 59.995 47.826 14.67 0.70 0.00 3.86
902 955 3.005155 CCCCTCTGCAGTTTCTTTTTCTG 59.995 47.826 14.67 0.00 0.00 3.02
911 969 3.249189 TCGCCCCCTCTGCAGTTT 61.249 61.111 14.67 0.00 0.00 2.66
950 1008 3.497932 GCCAGCAGAGCTTCGCAG 61.498 66.667 10.53 2.86 36.40 5.18
988 1048 4.489771 GGCCATGGTGGAGACCGG 62.490 72.222 14.67 0.00 46.62 5.28
989 1049 3.391665 GAGGCCATGGTGGAGACCG 62.392 68.421 14.67 0.00 46.62 4.79
990 1050 1.566298 AAGAGGCCATGGTGGAGACC 61.566 60.000 14.67 4.52 40.96 3.85
991 1051 0.329596 AAAGAGGCCATGGTGGAGAC 59.670 55.000 14.67 0.00 40.96 3.36
1131 1892 1.840635 GAGCCCTTGAGGAACCTGTAT 59.159 52.381 0.00 0.00 38.24 2.29
1152 1913 2.125912 CGCCTCACCTCCTCGTTG 60.126 66.667 0.00 0.00 0.00 4.10
1303 2064 5.348986 TCAATTACCAGCAGAATCTCGTAC 58.651 41.667 0.00 0.00 0.00 3.67
1304 2065 5.592104 TCAATTACCAGCAGAATCTCGTA 57.408 39.130 0.00 0.00 0.00 3.43
1305 2066 4.471904 TCAATTACCAGCAGAATCTCGT 57.528 40.909 0.00 0.00 0.00 4.18
1393 2186 4.081642 GGATCAACAGTGAGCTTACAGGTA 60.082 45.833 11.65 0.00 40.17 3.08
1405 2198 1.888215 ACTGCACAGGATCAACAGTG 58.112 50.000 2.21 0.00 39.97 3.66
1436 2229 6.791867 TCCATGTTGCTACTAGAATACAGT 57.208 37.500 0.00 0.00 0.00 3.55
1437 2230 9.935241 AATATCCATGTTGCTACTAGAATACAG 57.065 33.333 0.00 0.00 0.00 2.74
1443 2236 9.088987 TCACATAATATCCATGTTGCTACTAGA 57.911 33.333 0.00 0.00 34.39 2.43
1481 2277 9.750125 GCATATTATCATCCGTATCATCAACTA 57.250 33.333 0.00 0.00 0.00 2.24
1482 2278 8.260114 TGCATATTATCATCCGTATCATCAACT 58.740 33.333 0.00 0.00 0.00 3.16
1540 2336 3.101643 TGGCTCTCCTGTGTAGTGTAT 57.898 47.619 0.00 0.00 0.00 2.29
1541 2337 2.597578 TGGCTCTCCTGTGTAGTGTA 57.402 50.000 0.00 0.00 0.00 2.90
1542 2338 1.944177 ATGGCTCTCCTGTGTAGTGT 58.056 50.000 0.00 0.00 0.00 3.55
1543 2339 3.055530 AGAAATGGCTCTCCTGTGTAGTG 60.056 47.826 0.00 0.00 0.00 2.74
1544 2340 3.055530 CAGAAATGGCTCTCCTGTGTAGT 60.056 47.826 0.00 0.00 0.00 2.73
1578 2374 4.113815 CAGATCCGGGGCTTGGCA 62.114 66.667 0.00 0.00 0.00 4.92
1581 2377 1.450312 GACACAGATCCGGGGCTTG 60.450 63.158 0.00 0.00 0.00 4.01
1596 2392 4.395959 AACCAACTCGTAGTCAAAGACA 57.604 40.909 0.00 0.00 34.60 3.41
1602 2398 2.230508 CTGCCTAACCAACTCGTAGTCA 59.769 50.000 0.00 0.00 0.00 3.41
1698 2494 1.153046 ACCGTTCACCAACACCAGG 60.153 57.895 0.00 0.00 32.14 4.45
1704 2500 1.001815 CAATCCACACCGTTCACCAAC 60.002 52.381 0.00 0.00 0.00 3.77
1747 2543 1.422531 TCCATTGCAAAAGCAGGGTT 58.577 45.000 1.71 0.00 0.00 4.11
1758 2554 9.639563 TCAATTACCTTTATCTTATCCATTGCA 57.360 29.630 0.00 0.00 0.00 4.08
1811 2610 0.599991 CACGCTTGCTGTGGAGTACA 60.600 55.000 0.00 0.00 37.78 2.90
1812 2611 0.319555 TCACGCTTGCTGTGGAGTAC 60.320 55.000 13.98 0.00 37.91 2.73
1813 2612 0.608130 ATCACGCTTGCTGTGGAGTA 59.392 50.000 13.98 0.94 37.91 2.59
1814 2613 0.952497 CATCACGCTTGCTGTGGAGT 60.952 55.000 13.98 3.32 37.91 3.85
1815 2614 1.792301 CATCACGCTTGCTGTGGAG 59.208 57.895 13.98 6.71 37.91 3.86
1818 2617 0.728129 CTTGCATCACGCTTGCTGTG 60.728 55.000 6.41 9.89 43.06 3.66
1819 2618 1.577922 CTTGCATCACGCTTGCTGT 59.422 52.632 6.41 0.00 43.06 4.40
1930 2763 9.559958 GTATTTTCATTCACTGATTTGATTCGT 57.440 29.630 0.00 0.00 32.72 3.85
1931 2764 9.558648 TGTATTTTCATTCACTGATTTGATTCG 57.441 29.630 0.00 0.00 32.72 3.34
1949 2783 9.869757 AGTAAACCATGCCTATTTTGTATTTTC 57.130 29.630 0.00 0.00 0.00 2.29
1962 2796 5.016173 TGCATAGAAAAGTAAACCATGCCT 58.984 37.500 0.00 0.00 37.17 4.75
2030 2865 1.069227 GGCACAAGACACCATCGTTTC 60.069 52.381 0.00 0.00 0.00 2.78
2035 2870 0.598065 GTTGGGCACAAGACACCATC 59.402 55.000 0.00 0.00 37.25 3.51
2063 2906 3.213206 TGCCTGATCTTCAAACACACT 57.787 42.857 0.00 0.00 0.00 3.55
2071 2914 2.751259 GTTCTTGCATGCCTGATCTTCA 59.249 45.455 16.68 0.00 0.00 3.02
2077 2920 1.689984 TTGTGTTCTTGCATGCCTGA 58.310 45.000 16.68 10.46 0.00 3.86
2084 2927 6.716628 AGGATTTCTCTATTTGTGTTCTTGCA 59.283 34.615 0.00 0.00 0.00 4.08
2085 2928 7.150783 AGGATTTCTCTATTTGTGTTCTTGC 57.849 36.000 0.00 0.00 0.00 4.01
2170 3013 6.202954 CCATTCCTAATTTGTAGCTACTTCCG 59.797 42.308 23.84 8.13 0.00 4.30
2225 3068 5.290493 AGTAAACTGGATATGGCGATTGA 57.710 39.130 0.00 0.00 0.00 2.57
2279 3122 3.488553 GCAAATGAAAGCATACGGGGTAC 60.489 47.826 0.00 0.00 33.44 3.34
2280 3123 2.685897 GCAAATGAAAGCATACGGGGTA 59.314 45.455 0.00 0.00 33.44 3.69
2281 3124 1.476488 GCAAATGAAAGCATACGGGGT 59.524 47.619 0.00 0.00 33.44 4.95
2314 3216 6.713520 CATTCGAGGAAATGAACTTCTCATC 58.286 40.000 0.00 0.00 44.43 2.92
2323 3225 3.378112 GGATGTGCATTCGAGGAAATGAA 59.622 43.478 0.00 0.00 38.64 2.57
2329 3231 2.684374 CAAATGGATGTGCATTCGAGGA 59.316 45.455 0.14 0.00 0.00 3.71
2332 3234 1.134753 GCCAAATGGATGTGCATTCGA 59.865 47.619 2.98 0.00 37.39 3.71
2333 3235 1.135527 AGCCAAATGGATGTGCATTCG 59.864 47.619 2.98 0.00 37.39 3.34
2334 3236 2.166870 TGAGCCAAATGGATGTGCATTC 59.833 45.455 2.98 0.00 37.39 2.67
2335 3237 2.093869 GTGAGCCAAATGGATGTGCATT 60.094 45.455 2.98 0.00 37.39 3.56
2336 3238 1.479323 GTGAGCCAAATGGATGTGCAT 59.521 47.619 2.98 0.00 37.39 3.96
2339 3241 4.460382 AGTTAAGTGAGCCAAATGGATGTG 59.540 41.667 2.98 0.00 37.39 3.21
2340 3242 4.666512 AGTTAAGTGAGCCAAATGGATGT 58.333 39.130 2.98 0.00 37.39 3.06
2341 3243 4.096984 GGAGTTAAGTGAGCCAAATGGATG 59.903 45.833 2.98 0.00 37.39 3.51
2342 3244 4.273318 GGAGTTAAGTGAGCCAAATGGAT 58.727 43.478 2.98 0.00 37.39 3.41
2343 3245 3.686016 GGAGTTAAGTGAGCCAAATGGA 58.314 45.455 2.98 0.00 37.39 3.41
2345 3247 3.074412 ACGGAGTTAAGTGAGCCAAATG 58.926 45.455 0.00 0.00 37.78 2.32
2346 3248 3.418684 ACGGAGTTAAGTGAGCCAAAT 57.581 42.857 0.00 0.00 37.78 2.32
2347 3249 2.922740 ACGGAGTTAAGTGAGCCAAA 57.077 45.000 0.00 0.00 37.78 3.28
2348 3250 3.259876 ACATACGGAGTTAAGTGAGCCAA 59.740 43.478 0.00 0.00 37.78 4.52
2350 3252 3.521947 ACATACGGAGTTAAGTGAGCC 57.478 47.619 0.00 0.00 37.78 4.70
2351 3253 4.745649 AGAACATACGGAGTTAAGTGAGC 58.254 43.478 0.00 0.00 37.78 4.26
2352 3254 7.384115 TCAAAAGAACATACGGAGTTAAGTGAG 59.616 37.037 0.00 0.00 37.78 3.51
2353 3255 7.211573 TCAAAAGAACATACGGAGTTAAGTGA 58.788 34.615 0.00 0.00 37.78 3.41
2355 3257 7.439381 TCTCAAAAGAACATACGGAGTTAAGT 58.561 34.615 0.00 0.00 37.78 2.24
2356 3258 7.884816 TCTCAAAAGAACATACGGAGTTAAG 57.115 36.000 0.00 0.00 37.78 1.85
2357 3259 8.842358 AATCTCAAAAGAACATACGGAGTTAA 57.158 30.769 0.00 0.00 37.16 2.01
2363 3265 6.910536 AGCTAATCTCAAAAGAACATACGG 57.089 37.500 0.00 0.00 34.49 4.02
2381 3283 4.016444 CCTTTTTGTGGGCAGATAGCTAA 58.984 43.478 0.00 0.00 44.79 3.09
2382 3284 3.265737 TCCTTTTTGTGGGCAGATAGCTA 59.734 43.478 0.00 0.00 44.79 3.32
2388 3290 3.075283 TCCTATTCCTTTTTGTGGGCAGA 59.925 43.478 0.00 0.00 0.00 4.26
2399 3301 4.385754 GCATCCACTTCCTCCTATTCCTTT 60.386 45.833 0.00 0.00 0.00 3.11
2410 3312 4.104383 TCTTTTCAAGCATCCACTTCCT 57.896 40.909 0.00 0.00 0.00 3.36
2411 3313 4.802999 CTTCTTTTCAAGCATCCACTTCC 58.197 43.478 0.00 0.00 0.00 3.46
2455 3357 2.992744 GCTAACCGCGAGTTTATGAC 57.007 50.000 8.23 0.00 40.05 3.06
2470 3372 2.890371 GCTCCCCTTCGACGCTAA 59.110 61.111 0.00 0.00 0.00 3.09
2479 3381 1.518367 TTTCCATATCCGCTCCCCTT 58.482 50.000 0.00 0.00 0.00 3.95
2480 3382 1.352352 CATTTCCATATCCGCTCCCCT 59.648 52.381 0.00 0.00 0.00 4.79
2481 3383 1.351017 TCATTTCCATATCCGCTCCCC 59.649 52.381 0.00 0.00 0.00 4.81
2502 3404 4.218417 CCCTCAAACATCAAACCAAGTAGG 59.782 45.833 0.00 0.00 45.67 3.18
2508 3410 1.962807 CAGCCCTCAAACATCAAACCA 59.037 47.619 0.00 0.00 0.00 3.67
2518 3420 0.320421 GTCGTAGTGCAGCCCTCAAA 60.320 55.000 0.00 0.00 0.00 2.69
2532 3434 3.065306 CCCCCTTGCACTGTCGTA 58.935 61.111 0.00 0.00 0.00 3.43
2535 3437 2.203480 TTGCCCCCTTGCACTGTC 60.203 61.111 0.00 0.00 41.88 3.51
2556 3458 0.392193 TGCTCAAGCTTAGCTGCTCC 60.392 55.000 20.93 0.00 43.24 4.70
2580 3482 1.103803 TGCACTCGTGTAGGATCTCC 58.896 55.000 0.00 0.00 0.00 3.71
2604 3506 1.203052 TCGTAACCGGCGAAGAAGAAT 59.797 47.619 9.30 0.00 35.28 2.40
2616 3518 0.022853 GCGATGTCGTTTCGTAACCG 59.977 55.000 4.20 0.00 42.22 4.44
2635 3537 0.683973 ACTGTCCAGGTGAGCAGAAG 59.316 55.000 0.00 0.00 33.57 2.85
2796 3699 7.028926 AGCAATTTCTCAAGACATGATCATC 57.971 36.000 4.86 0.00 37.44 2.92
2866 3778 8.076178 AGTTAGCTGTACATGTGTTGAAATTTC 58.924 33.333 9.11 11.41 0.00 2.17
2876 3788 7.009631 GTCATGTTCTAGTTAGCTGTACATGTG 59.990 40.741 9.11 0.00 38.59 3.21
2878 3790 7.035612 TGTCATGTTCTAGTTAGCTGTACATG 58.964 38.462 16.92 16.92 38.70 3.21
3060 3972 2.708759 TCCTCACCCCAGACCTTTTTA 58.291 47.619 0.00 0.00 0.00 1.52
3063 3975 0.995024 CATCCTCACCCCAGACCTTT 59.005 55.000 0.00 0.00 0.00 3.11
3123 4035 2.815647 GGAACCTTCGCCGCTCTG 60.816 66.667 0.00 0.00 0.00 3.35
3132 4044 1.966451 CAGGGCGTGTGGAACCTTC 60.966 63.158 0.00 0.00 34.36 3.46
3224 4136 1.412710 AGAACTTCTGCAGAACCGTCA 59.587 47.619 25.16 4.06 0.00 4.35
3340 4252 2.091885 ACCAGCCGGTTCCATTTCATAT 60.092 45.455 1.90 0.00 46.31 1.78
3357 4269 3.814842 TGTACTGCAACATTCAGAACCAG 59.185 43.478 0.00 0.00 35.61 4.00
3409 4330 6.808704 AGAATATATACACTGCGTGCACTATG 59.191 38.462 16.19 9.81 36.98 2.23
3465 4386 9.480053 GCCACATGCAATATATTTTCTTGTAAT 57.520 29.630 12.05 0.00 40.77 1.89
3466 4387 8.694540 AGCCACATGCAATATATTTTCTTGTAA 58.305 29.630 12.05 0.00 44.83 2.41
3471 4400 7.205297 GTCAAGCCACATGCAATATATTTTCT 58.795 34.615 0.00 0.00 44.83 2.52
3508 4437 5.000591 TCGAAAATTAGACTGTCCATGCAA 58.999 37.500 3.76 0.00 0.00 4.08
3540 4469 0.396278 ATAAAGGCAAGGCAGGAGGC 60.396 55.000 0.00 0.00 43.74 4.70
3541 4470 1.685148 GATAAAGGCAAGGCAGGAGG 58.315 55.000 0.00 0.00 0.00 4.30
3558 4487 5.538433 GTCTGAGTAGATTCAGCTTAGGGAT 59.462 44.000 0.00 0.00 43.39 3.85
3561 4490 5.451242 GGTGTCTGAGTAGATTCAGCTTAGG 60.451 48.000 0.00 0.00 43.39 2.69
3575 4504 2.341543 CGCAGCAGGTGTCTGAGT 59.658 61.111 0.66 0.00 43.49 3.41
3592 4521 2.026014 CACAACGGTGCAAGTGGC 59.974 61.111 0.00 0.00 45.13 5.01
3619 4548 3.192212 GGGAATTCAAGAGTCTTTGCCAG 59.808 47.826 7.93 0.00 0.00 4.85
3622 4551 3.441922 GGAGGGAATTCAAGAGTCTTTGC 59.558 47.826 7.93 0.00 0.00 3.68
3663 4592 0.714994 TTACGGTTACACAATCGCGC 59.285 50.000 0.00 0.00 42.17 6.86
3664 4593 1.266696 GCTTACGGTTACACAATCGCG 60.267 52.381 0.00 0.00 42.17 5.87
3665 4594 1.061566 GGCTTACGGTTACACAATCGC 59.938 52.381 0.00 0.00 42.17 4.58
3666 4595 2.339418 TGGCTTACGGTTACACAATCG 58.661 47.619 0.00 0.00 44.06 3.34
3667 4596 4.957759 AATGGCTTACGGTTACACAATC 57.042 40.909 0.00 0.00 0.00 2.67
3668 4597 4.157105 GGAAATGGCTTACGGTTACACAAT 59.843 41.667 0.00 0.00 0.00 2.71
3669 4598 3.502979 GGAAATGGCTTACGGTTACACAA 59.497 43.478 0.00 0.00 0.00 3.33
3670 4599 3.075884 GGAAATGGCTTACGGTTACACA 58.924 45.455 0.00 0.00 0.00 3.72
3671 4600 2.421073 GGGAAATGGCTTACGGTTACAC 59.579 50.000 0.00 0.00 0.00 2.90
3672 4601 2.618559 GGGGAAATGGCTTACGGTTACA 60.619 50.000 0.00 0.00 0.00 2.41
3673 4602 2.019249 GGGGAAATGGCTTACGGTTAC 58.981 52.381 0.00 0.00 0.00 2.50
3674 4603 1.064537 GGGGGAAATGGCTTACGGTTA 60.065 52.381 0.00 0.00 0.00 2.85
3675 4604 0.323999 GGGGGAAATGGCTTACGGTT 60.324 55.000 0.00 0.00 0.00 4.44
3676 4605 1.305287 GGGGGAAATGGCTTACGGT 59.695 57.895 0.00 0.00 0.00 4.83
3677 4606 1.035385 GTGGGGGAAATGGCTTACGG 61.035 60.000 0.00 0.00 0.00 4.02
3678 4607 0.322997 TGTGGGGGAAATGGCTTACG 60.323 55.000 0.00 0.00 0.00 3.18
3679 4608 1.182667 GTGTGGGGGAAATGGCTTAC 58.817 55.000 0.00 0.00 0.00 2.34
3680 4609 0.322997 CGTGTGGGGGAAATGGCTTA 60.323 55.000 0.00 0.00 0.00 3.09
3681 4610 1.606313 CGTGTGGGGGAAATGGCTT 60.606 57.895 0.00 0.00 0.00 4.35
3682 4611 2.035626 CGTGTGGGGGAAATGGCT 59.964 61.111 0.00 0.00 0.00 4.75
3683 4612 2.034999 TCGTGTGGGGGAAATGGC 59.965 61.111 0.00 0.00 0.00 4.40
3684 4613 2.046285 GCTCGTGTGGGGGAAATGG 61.046 63.158 0.00 0.00 0.00 3.16
3685 4614 2.398554 CGCTCGTGTGGGGGAAATG 61.399 63.158 0.00 0.00 0.00 2.32
3686 4615 2.046314 CGCTCGTGTGGGGGAAAT 60.046 61.111 0.00 0.00 0.00 2.17
3687 4616 2.326773 TTTCGCTCGTGTGGGGGAAA 62.327 55.000 3.58 3.58 40.35 3.13
3688 4617 2.725203 CTTTCGCTCGTGTGGGGGAA 62.725 60.000 0.00 0.00 33.67 3.97
3689 4618 3.234630 CTTTCGCTCGTGTGGGGGA 62.235 63.158 0.00 0.00 0.00 4.81
3690 4619 2.742372 CTTTCGCTCGTGTGGGGG 60.742 66.667 0.00 0.00 0.00 5.40
3691 4620 3.423154 GCTTTCGCTCGTGTGGGG 61.423 66.667 0.00 0.00 0.00 4.96
3692 4621 3.423154 GGCTTTCGCTCGTGTGGG 61.423 66.667 0.00 0.00 36.09 4.61
3693 4622 2.175184 CTTGGCTTTCGCTCGTGTGG 62.175 60.000 0.00 0.00 36.09 4.17
3694 4623 1.205064 CTTGGCTTTCGCTCGTGTG 59.795 57.895 0.00 0.00 36.09 3.82
3695 4624 0.320771 ATCTTGGCTTTCGCTCGTGT 60.321 50.000 0.00 0.00 36.09 4.49
3696 4625 0.798776 AATCTTGGCTTTCGCTCGTG 59.201 50.000 0.00 0.00 36.09 4.35
3697 4626 1.079503 GAATCTTGGCTTTCGCTCGT 58.920 50.000 0.00 0.00 36.09 4.18
3698 4627 0.375106 GGAATCTTGGCTTTCGCTCG 59.625 55.000 0.00 0.00 36.09 5.03
3699 4628 1.453155 TGGAATCTTGGCTTTCGCTC 58.547 50.000 0.00 0.00 36.09 5.03
3700 4629 1.909700 TTGGAATCTTGGCTTTCGCT 58.090 45.000 0.00 0.00 36.09 4.93
3701 4630 2.723124 TTTGGAATCTTGGCTTTCGC 57.277 45.000 0.00 0.00 0.00 4.70
3702 4631 3.578688 CCTTTTGGAATCTTGGCTTTCG 58.421 45.455 0.00 0.00 44.07 3.46
3703 4632 3.324846 ACCCTTTTGGAATCTTGGCTTTC 59.675 43.478 0.00 0.00 44.07 2.62
3704 4633 3.317406 ACCCTTTTGGAATCTTGGCTTT 58.683 40.909 0.00 0.00 44.07 3.51
3705 4634 2.899900 GACCCTTTTGGAATCTTGGCTT 59.100 45.455 0.00 0.00 44.07 4.35
3706 4635 2.529632 GACCCTTTTGGAATCTTGGCT 58.470 47.619 0.00 0.00 44.07 4.75
3707 4636 1.202348 CGACCCTTTTGGAATCTTGGC 59.798 52.381 0.00 0.00 44.07 4.52
3708 4637 2.514803 ACGACCCTTTTGGAATCTTGG 58.485 47.619 0.00 0.00 44.07 3.61
3709 4638 4.575885 TCTACGACCCTTTTGGAATCTTG 58.424 43.478 0.00 0.00 44.07 3.02
3710 4639 4.903045 TCTACGACCCTTTTGGAATCTT 57.097 40.909 0.00 0.00 44.07 2.40
3711 4640 4.903045 TTCTACGACCCTTTTGGAATCT 57.097 40.909 0.00 0.00 44.07 2.40
3712 4641 6.150474 TCAAATTCTACGACCCTTTTGGAATC 59.850 38.462 0.00 0.00 44.07 2.52
3713 4642 6.007703 TCAAATTCTACGACCCTTTTGGAAT 58.992 36.000 0.00 0.00 44.07 3.01
3714 4643 5.378332 TCAAATTCTACGACCCTTTTGGAA 58.622 37.500 0.00 0.00 44.07 3.53
3715 4644 4.975631 TCAAATTCTACGACCCTTTTGGA 58.024 39.130 0.00 0.00 44.07 3.53
3716 4645 5.699097 TTCAAATTCTACGACCCTTTTGG 57.301 39.130 0.00 0.00 41.37 3.28
3717 4646 5.629435 GCTTTCAAATTCTACGACCCTTTTG 59.371 40.000 0.00 0.00 0.00 2.44
3718 4647 5.278808 GGCTTTCAAATTCTACGACCCTTTT 60.279 40.000 0.00 0.00 0.00 2.27
3719 4648 4.217767 GGCTTTCAAATTCTACGACCCTTT 59.782 41.667 0.00 0.00 0.00 3.11
3720 4649 3.756963 GGCTTTCAAATTCTACGACCCTT 59.243 43.478 0.00 0.00 0.00 3.95
3721 4650 3.244770 TGGCTTTCAAATTCTACGACCCT 60.245 43.478 0.00 0.00 0.00 4.34
3722 4651 3.078837 TGGCTTTCAAATTCTACGACCC 58.921 45.455 0.00 0.00 0.00 4.46
3723 4652 3.751698 ACTGGCTTTCAAATTCTACGACC 59.248 43.478 0.00 0.00 0.00 4.79
3724 4653 5.358298 AACTGGCTTTCAAATTCTACGAC 57.642 39.130 0.00 0.00 0.00 4.34
3725 4654 7.361713 CCATAAACTGGCTTTCAAATTCTACGA 60.362 37.037 0.00 0.00 38.47 3.43
3726 4655 6.747280 CCATAAACTGGCTTTCAAATTCTACG 59.253 38.462 0.00 0.00 38.47 3.51
3727 4656 7.035612 CCCATAAACTGGCTTTCAAATTCTAC 58.964 38.462 0.00 0.00 44.46 2.59
3728 4657 6.723977 ACCCATAAACTGGCTTTCAAATTCTA 59.276 34.615 0.00 0.00 44.46 2.10
3729 4658 5.543790 ACCCATAAACTGGCTTTCAAATTCT 59.456 36.000 0.00 0.00 44.46 2.40
3730 4659 5.793817 ACCCATAAACTGGCTTTCAAATTC 58.206 37.500 0.00 0.00 44.46 2.17
3731 4660 5.823861 ACCCATAAACTGGCTTTCAAATT 57.176 34.783 0.00 0.00 44.46 1.82
3732 4661 5.823861 AACCCATAAACTGGCTTTCAAAT 57.176 34.783 0.00 0.00 44.46 2.32
3733 4662 5.622346 AAACCCATAAACTGGCTTTCAAA 57.378 34.783 0.00 0.00 44.46 2.69
3734 4663 5.365314 AGAAAACCCATAAACTGGCTTTCAA 59.635 36.000 14.37 0.00 44.46 2.69
3735 4664 4.898861 AGAAAACCCATAAACTGGCTTTCA 59.101 37.500 14.37 0.00 44.46 2.69
3736 4665 5.468540 AGAAAACCCATAAACTGGCTTTC 57.531 39.130 0.00 0.00 44.46 2.62
3737 4666 5.887214 AAGAAAACCCATAAACTGGCTTT 57.113 34.783 0.00 0.00 44.46 3.51
3738 4667 5.887214 AAAGAAAACCCATAAACTGGCTT 57.113 34.783 0.00 0.00 44.46 4.35
3739 4668 5.887214 AAAAGAAAACCCATAAACTGGCT 57.113 34.783 0.00 0.00 44.46 4.75
3740 4669 6.988522 TCTAAAAGAAAACCCATAAACTGGC 58.011 36.000 0.00 0.00 44.46 4.85
3741 4670 9.825109 TTTTCTAAAAGAAAACCCATAAACTGG 57.175 29.630 10.07 0.00 45.99 4.00
3746 4675 8.866093 CCTCCTTTTCTAAAAGAAAACCCATAA 58.134 33.333 15.16 0.00 45.99 1.90
3747 4676 8.228905 TCCTCCTTTTCTAAAAGAAAACCCATA 58.771 33.333 15.16 0.00 45.99 2.74
3748 4677 7.073208 TCCTCCTTTTCTAAAAGAAAACCCAT 58.927 34.615 15.16 0.00 45.99 4.00
3749 4678 6.436890 TCCTCCTTTTCTAAAAGAAAACCCA 58.563 36.000 15.16 0.00 45.99 4.51
3750 4679 6.015350 CCTCCTCCTTTTCTAAAAGAAAACCC 60.015 42.308 15.16 0.00 45.99 4.11
3751 4680 6.776116 TCCTCCTCCTTTTCTAAAAGAAAACC 59.224 38.462 15.16 0.00 45.99 3.27
3752 4681 7.255520 GGTCCTCCTCCTTTTCTAAAAGAAAAC 60.256 40.741 15.16 0.00 45.99 2.43
3798 4728 9.130661 ACAATTAATAAAGTGGCTACATGCATA 57.869 29.630 0.00 0.00 45.15 3.14
3806 4736 8.397575 TGTGTGAACAATTAATAAAGTGGCTA 57.602 30.769 0.00 0.00 35.01 3.93
3859 4789 3.283259 GCCTAGATGGTGGCTTTAGTT 57.717 47.619 0.00 0.00 45.26 2.24
3885 4815 4.525487 TCAACTGGTTAGGAGTAACGACAT 59.475 41.667 0.00 0.00 39.70 3.06
3891 4821 5.045869 CCCTTCATCAACTGGTTAGGAGTAA 60.046 44.000 0.00 0.00 0.00 2.24
3931 4861 2.431057 CGAGGACTGCTTGGTATTAGGT 59.569 50.000 0.00 0.00 0.00 3.08
3943 4873 1.648467 GGTTTGGATGCGAGGACTGC 61.648 60.000 0.00 0.00 0.00 4.40
3947 4877 1.626321 TGTTAGGTTTGGATGCGAGGA 59.374 47.619 0.00 0.00 0.00 3.71
3989 4919 1.105167 CATACCCGACAGGCGTCCTA 61.105 60.000 0.00 0.00 40.58 2.94
4039 4969 1.754803 CATACTCGGCAGGTGTCCTAA 59.245 52.381 0.00 0.00 29.64 2.69
4080 5010 5.241403 ACAACACTGAAGATGGATTGGTA 57.759 39.130 0.00 0.00 0.00 3.25
4118 5048 2.359975 GGGAACAAGACCGGGCAG 60.360 66.667 11.69 3.46 0.00 4.85
4218 5148 0.748005 GGTGAGTATTGGCGGCATGT 60.748 55.000 14.32 7.62 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.