Multiple sequence alignment - TraesCS2A01G125000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G125000 chr2A 100.000 4189 0 0 1 4189 74049002 74053190 0.000000e+00 7736.0
1 TraesCS2A01G125000 chr2A 94.935 770 35 4 3421 4189 730128816 730128050 0.000000e+00 1203.0
2 TraesCS2A01G125000 chr2A 79.072 970 160 26 228 1170 73384602 73383649 9.890000e-176 627.0
3 TraesCS2A01G125000 chr2A 90.566 477 38 7 3715 4189 645690939 645691410 3.560000e-175 625.0
4 TraesCS2A01G125000 chr2A 90.546 476 38 7 3715 4189 614292749 614293218 1.280000e-174 623.0
5 TraesCS2A01G125000 chr2A 83.154 279 42 5 3074 3350 73383520 73383245 2.500000e-62 250.0
6 TraesCS2A01G125000 chr2A 78.704 324 60 8 2922 3239 73299057 73298737 1.530000e-49 207.0
7 TraesCS2A01G125000 chr7A 95.945 1751 66 5 1173 2921 527111214 527109467 0.000000e+00 2835.0
8 TraesCS2A01G125000 chr7A 95.881 1748 67 5 1175 2921 130173679 130171936 0.000000e+00 2824.0
9 TraesCS2A01G125000 chr7A 73.820 233 41 10 436 665 733781266 733781481 1.620000e-09 75.0
10 TraesCS2A01G125000 chr4A 95.943 1750 65 6 1173 2922 346018548 346016805 0.000000e+00 2833.0
11 TraesCS2A01G125000 chr3A 95.831 1751 69 4 1173 2921 545291346 545293094 0.000000e+00 2826.0
12 TraesCS2A01G125000 chr3A 90.985 477 37 6 3715 4189 517032161 517032633 4.570000e-179 638.0
13 TraesCS2A01G125000 chr3A 90.776 477 38 6 3714 4188 366827738 366828210 2.120000e-177 632.0
14 TraesCS2A01G125000 chr3A 90.756 476 37 7 3715 4189 569772001 569771532 2.750000e-176 628.0
15 TraesCS2A01G125000 chr3A 86.111 72 9 1 1 72 166048895 166048965 4.490000e-10 76.8
16 TraesCS2A01G125000 chr5A 95.726 1755 69 6 1170 2921 294043409 294045160 0.000000e+00 2820.0
17 TraesCS2A01G125000 chr5A 95.776 1752 67 6 1172 2921 547656580 547654834 0.000000e+00 2819.0
18 TraesCS2A01G125000 chr5A 95.714 1750 72 3 1173 2921 526472259 526474006 0.000000e+00 2813.0
19 TraesCS2A01G125000 chr5A 90.546 476 39 6 3715 4189 236943490 236943020 3.560000e-175 625.0
20 TraesCS2A01G125000 chr5A 91.667 48 2 2 3415 3462 122372899 122372944 9.720000e-07 65.8
21 TraesCS2A01G125000 chr1A 95.781 1754 65 7 1173 2921 57424651 57422902 0.000000e+00 2820.0
22 TraesCS2A01G125000 chr1A 95.769 1749 72 2 1173 2921 463477655 463479401 0.000000e+00 2819.0
23 TraesCS2A01G125000 chr1A 90.776 477 34 9 3715 4189 80438111 80438579 2.750000e-176 628.0
24 TraesCS2A01G125000 chr1A 87.500 80 9 1 1 80 372981545 372981623 1.600000e-14 91.6
25 TraesCS2A01G125000 chr5D 89.921 764 63 7 3427 4189 461602839 461602089 0.000000e+00 972.0
26 TraesCS2A01G125000 chr5D 91.111 45 3 1 3412 3456 563122422 563122465 4.520000e-05 60.2
27 TraesCS2A01G125000 chr2D 82.846 991 146 5 205 1172 73865251 73864262 0.000000e+00 867.0
28 TraesCS2A01G125000 chr2D 78.665 989 149 34 228 1172 73970598 73969628 5.990000e-168 601.0
29 TraesCS2A01G125000 chr2D 80.227 440 69 15 2922 3350 73864266 73863834 8.740000e-82 315.0
30 TraesCS2A01G125000 chr2D 83.513 279 41 5 3074 3350 73969501 73969226 5.370000e-64 255.0
31 TraesCS2A01G125000 chr2D 88.312 77 9 0 4 80 42629104 42629028 4.460000e-15 93.5
32 TraesCS2A01G125000 chr2D 88.732 71 8 0 1 71 51835565 51835635 2.070000e-13 87.9
33 TraesCS2A01G125000 chr2D 86.486 74 10 0 1 74 51855693 51855766 9.650000e-12 82.4
34 TraesCS2A01G125000 chr4D 91.211 512 41 3 3529 4038 195226283 195226792 0.000000e+00 693.0
35 TraesCS2A01G125000 chr1B 91.786 487 36 2 3411 3896 645959815 645960298 0.000000e+00 675.0
36 TraesCS2A01G125000 chr2B 78.739 983 156 34 228 1172 113171279 113170312 3.580000e-170 608.0
37 TraesCS2A01G125000 chr2B 78.419 987 161 21 228 1172 112470007 112469031 2.790000e-166 595.0
38 TraesCS2A01G125000 chr2B 83.154 279 42 4 3074 3350 113170182 113169907 2.500000e-62 250.0
39 TraesCS2A01G125000 chr2B 82.143 280 43 6 3073 3350 113036290 113036016 2.520000e-57 233.0
40 TraesCS2A01G125000 chr2B 87.879 66 7 1 9 74 80368359 80368423 4.490000e-10 76.8
41 TraesCS2A01G125000 chr2B 86.765 68 9 0 2964 3031 113036375 113036308 4.490000e-10 76.8
42 TraesCS2A01G125000 chr2B 88.462 52 2 4 3413 3462 206743896 206743945 4.520000e-05 60.2
43 TraesCS2A01G125000 chr4B 93.889 180 11 0 3423 3602 481604279 481604458 5.340000e-69 272.0
44 TraesCS2A01G125000 chr1D 90.000 80 8 0 1 80 478499470 478499549 2.060000e-18 104.0
45 TraesCS2A01G125000 chr3B 88.158 76 9 0 3 78 309593288 309593363 1.600000e-14 91.6
46 TraesCS2A01G125000 chr3B 88.000 50 6 0 3408 3457 553069578 553069529 4.520000e-05 60.2
47 TraesCS2A01G125000 chr6D 88.158 76 8 1 4 79 409522689 409522615 5.770000e-14 89.8
48 TraesCS2A01G125000 chr5B 91.667 48 1 3 3415 3462 508675288 508675244 3.500000e-06 63.9
49 TraesCS2A01G125000 chr7B 88.000 50 6 0 436 485 750116418 750116369 4.520000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G125000 chr2A 74049002 74053190 4188 False 7736.0 7736 100.0000 1 4189 1 chr2A.!!$F1 4188
1 TraesCS2A01G125000 chr2A 730128050 730128816 766 True 1203.0 1203 94.9350 3421 4189 1 chr2A.!!$R2 768
2 TraesCS2A01G125000 chr2A 73383245 73384602 1357 True 438.5 627 81.1130 228 3350 2 chr2A.!!$R3 3122
3 TraesCS2A01G125000 chr7A 527109467 527111214 1747 True 2835.0 2835 95.9450 1173 2921 1 chr7A.!!$R2 1748
4 TraesCS2A01G125000 chr7A 130171936 130173679 1743 True 2824.0 2824 95.8810 1175 2921 1 chr7A.!!$R1 1746
5 TraesCS2A01G125000 chr4A 346016805 346018548 1743 True 2833.0 2833 95.9430 1173 2922 1 chr4A.!!$R1 1749
6 TraesCS2A01G125000 chr3A 545291346 545293094 1748 False 2826.0 2826 95.8310 1173 2921 1 chr3A.!!$F4 1748
7 TraesCS2A01G125000 chr5A 294043409 294045160 1751 False 2820.0 2820 95.7260 1170 2921 1 chr5A.!!$F2 1751
8 TraesCS2A01G125000 chr5A 547654834 547656580 1746 True 2819.0 2819 95.7760 1172 2921 1 chr5A.!!$R2 1749
9 TraesCS2A01G125000 chr5A 526472259 526474006 1747 False 2813.0 2813 95.7140 1173 2921 1 chr5A.!!$F3 1748
10 TraesCS2A01G125000 chr1A 57422902 57424651 1749 True 2820.0 2820 95.7810 1173 2921 1 chr1A.!!$R1 1748
11 TraesCS2A01G125000 chr1A 463477655 463479401 1746 False 2819.0 2819 95.7690 1173 2921 1 chr1A.!!$F3 1748
12 TraesCS2A01G125000 chr5D 461602089 461602839 750 True 972.0 972 89.9210 3427 4189 1 chr5D.!!$R1 762
13 TraesCS2A01G125000 chr2D 73863834 73865251 1417 True 591.0 867 81.5365 205 3350 2 chr2D.!!$R2 3145
14 TraesCS2A01G125000 chr2D 73969226 73970598 1372 True 428.0 601 81.0890 228 3350 2 chr2D.!!$R3 3122
15 TraesCS2A01G125000 chr4D 195226283 195226792 509 False 693.0 693 91.2110 3529 4038 1 chr4D.!!$F1 509
16 TraesCS2A01G125000 chr2B 112469031 112470007 976 True 595.0 595 78.4190 228 1172 1 chr2B.!!$R1 944
17 TraesCS2A01G125000 chr2B 113169907 113171279 1372 True 429.0 608 80.9465 228 3350 2 chr2B.!!$R3 3122

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.460284 CGACCGATGAGACCCTTTGG 60.460 60.0 0.0 0.0 37.80 3.28 F
1249 1325 0.394565 GCATAGCAACGAGAGGGGAT 59.605 55.0 0.0 0.0 0.00 3.85 F
1861 1946 0.830648 CTCTCCTTTCCCGTATGGCA 59.169 55.0 0.0 0.0 0.00 4.92 F
2988 3079 0.035534 TCGCTATTTGCTCTTGGGCA 60.036 50.0 0.0 0.0 40.74 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1372 1449 0.313987 TCATCGAGCTGAACGTGTGT 59.686 50.000 0.00 0.00 0.00 3.72 R
2922 3010 0.250038 TCTGACAGCCACTGACTTGC 60.250 55.000 0.78 0.00 35.18 4.01 R
3030 3121 0.383231 GCCAAAGAGGATGAATGCCG 59.617 55.000 0.00 0.00 41.22 5.69 R
4158 4265 4.081862 GGTATAGTGTGGCACTGACAACTA 60.082 45.833 19.83 16.84 45.01 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.572523 ATCAAACAACAGATTTGAAGTCTCA 57.427 32.000 4.43 0.00 46.26 3.27
26 27 7.572523 TCAAACAACAGATTTGAAGTCTCAT 57.427 32.000 0.00 0.00 41.82 2.90
27 28 8.675705 TCAAACAACAGATTTGAAGTCTCATA 57.324 30.769 0.00 0.00 41.82 2.15
28 29 8.559536 TCAAACAACAGATTTGAAGTCTCATAC 58.440 33.333 0.00 0.00 41.82 2.39
29 30 7.440523 AACAACAGATTTGAAGTCTCATACC 57.559 36.000 0.00 0.00 0.00 2.73
30 31 5.940470 ACAACAGATTTGAAGTCTCATACCC 59.060 40.000 0.00 0.00 0.00 3.69
31 32 5.104259 ACAGATTTGAAGTCTCATACCCC 57.896 43.478 0.00 0.00 0.00 4.95
32 33 4.785376 ACAGATTTGAAGTCTCATACCCCT 59.215 41.667 0.00 0.00 0.00 4.79
33 34 5.251700 ACAGATTTGAAGTCTCATACCCCTT 59.748 40.000 0.00 0.00 0.00 3.95
34 35 5.819901 CAGATTTGAAGTCTCATACCCCTTC 59.180 44.000 0.00 0.00 35.11 3.46
35 36 5.488919 AGATTTGAAGTCTCATACCCCTTCA 59.511 40.000 0.00 0.00 40.98 3.02
36 37 5.576563 TTTGAAGTCTCATACCCCTTCAA 57.423 39.130 9.02 9.02 46.53 2.69
37 38 5.779241 TTGAAGTCTCATACCCCTTCAAT 57.221 39.130 9.02 0.00 44.57 2.57
38 39 5.779241 TGAAGTCTCATACCCCTTCAATT 57.221 39.130 0.00 0.00 40.07 2.32
39 40 5.745227 TGAAGTCTCATACCCCTTCAATTC 58.255 41.667 0.00 0.00 40.07 2.17
40 41 4.779993 AGTCTCATACCCCTTCAATTCC 57.220 45.455 0.00 0.00 0.00 3.01
41 42 3.459969 AGTCTCATACCCCTTCAATTCCC 59.540 47.826 0.00 0.00 0.00 3.97
42 43 3.202151 GTCTCATACCCCTTCAATTCCCA 59.798 47.826 0.00 0.00 0.00 4.37
43 44 4.054369 TCTCATACCCCTTCAATTCCCAT 58.946 43.478 0.00 0.00 0.00 4.00
44 45 4.482025 TCTCATACCCCTTCAATTCCCATT 59.518 41.667 0.00 0.00 0.00 3.16
45 46 4.803452 TCATACCCCTTCAATTCCCATTC 58.197 43.478 0.00 0.00 0.00 2.67
46 47 2.550277 ACCCCTTCAATTCCCATTCC 57.450 50.000 0.00 0.00 0.00 3.01
47 48 1.008327 ACCCCTTCAATTCCCATTCCC 59.992 52.381 0.00 0.00 0.00 3.97
48 49 1.291939 CCCCTTCAATTCCCATTCCCT 59.708 52.381 0.00 0.00 0.00 4.20
49 50 2.517980 CCCCTTCAATTCCCATTCCCTA 59.482 50.000 0.00 0.00 0.00 3.53
50 51 3.566351 CCCTTCAATTCCCATTCCCTAC 58.434 50.000 0.00 0.00 0.00 3.18
51 52 3.566351 CCTTCAATTCCCATTCCCTACC 58.434 50.000 0.00 0.00 0.00 3.18
52 53 3.205282 CCTTCAATTCCCATTCCCTACCT 59.795 47.826 0.00 0.00 0.00 3.08
53 54 4.326132 CCTTCAATTCCCATTCCCTACCTT 60.326 45.833 0.00 0.00 0.00 3.50
54 55 4.965283 TCAATTCCCATTCCCTACCTTT 57.035 40.909 0.00 0.00 0.00 3.11
55 56 4.609301 TCAATTCCCATTCCCTACCTTTG 58.391 43.478 0.00 0.00 0.00 2.77
56 57 4.293634 TCAATTCCCATTCCCTACCTTTGA 59.706 41.667 0.00 0.00 0.00 2.69
57 58 5.043432 TCAATTCCCATTCCCTACCTTTGAT 60.043 40.000 0.00 0.00 0.00 2.57
58 59 4.965283 TTCCCATTCCCTACCTTTGATT 57.035 40.909 0.00 0.00 0.00 2.57
59 60 6.606241 ATTCCCATTCCCTACCTTTGATTA 57.394 37.500 0.00 0.00 0.00 1.75
60 61 5.382664 TCCCATTCCCTACCTTTGATTAC 57.617 43.478 0.00 0.00 0.00 1.89
61 62 4.134563 CCCATTCCCTACCTTTGATTACG 58.865 47.826 0.00 0.00 0.00 3.18
62 63 3.564225 CCATTCCCTACCTTTGATTACGC 59.436 47.826 0.00 0.00 0.00 4.42
63 64 2.994186 TCCCTACCTTTGATTACGCC 57.006 50.000 0.00 0.00 0.00 5.68
64 65 1.487558 TCCCTACCTTTGATTACGCCC 59.512 52.381 0.00 0.00 0.00 6.13
65 66 1.210967 CCCTACCTTTGATTACGCCCA 59.789 52.381 0.00 0.00 0.00 5.36
66 67 2.356330 CCCTACCTTTGATTACGCCCAA 60.356 50.000 0.00 0.00 0.00 4.12
67 68 2.681344 CCTACCTTTGATTACGCCCAAC 59.319 50.000 0.00 0.00 0.00 3.77
68 69 1.541379 ACCTTTGATTACGCCCAACC 58.459 50.000 0.00 0.00 0.00 3.77
69 70 1.202952 ACCTTTGATTACGCCCAACCA 60.203 47.619 0.00 0.00 0.00 3.67
70 71 1.889829 CCTTTGATTACGCCCAACCAA 59.110 47.619 0.00 0.00 0.00 3.67
71 72 2.297597 CCTTTGATTACGCCCAACCAAA 59.702 45.455 0.00 0.00 0.00 3.28
72 73 3.313690 CTTTGATTACGCCCAACCAAAC 58.686 45.455 0.00 0.00 0.00 2.93
73 74 1.982660 TGATTACGCCCAACCAAACA 58.017 45.000 0.00 0.00 0.00 2.83
74 75 1.609555 TGATTACGCCCAACCAAACAC 59.390 47.619 0.00 0.00 0.00 3.32
75 76 0.594110 ATTACGCCCAACCAAACACG 59.406 50.000 0.00 0.00 0.00 4.49
76 77 2.061182 TTACGCCCAACCAAACACGC 62.061 55.000 0.00 0.00 0.00 5.34
77 78 2.944409 TACGCCCAACCAAACACGCT 62.944 55.000 0.00 0.00 0.00 5.07
78 79 2.027460 GCCCAACCAAACACGCTG 59.973 61.111 0.00 0.00 0.00 5.18
79 80 2.781158 GCCCAACCAAACACGCTGT 61.781 57.895 0.00 0.00 0.00 4.40
80 81 1.065600 CCCAACCAAACACGCTGTG 59.934 57.895 7.07 7.07 39.75 3.66
81 82 1.065600 CCAACCAAACACGCTGTGG 59.934 57.895 12.18 0.00 37.94 4.17
82 83 1.065600 CAACCAAACACGCTGTGGG 59.934 57.895 12.18 8.81 37.94 4.61
83 84 1.379309 AACCAAACACGCTGTGGGT 60.379 52.632 12.18 9.31 39.57 4.51
102 103 3.644966 GTGACCACCATCCCAATCTAA 57.355 47.619 0.00 0.00 0.00 2.10
103 104 3.963129 GTGACCACCATCCCAATCTAAA 58.037 45.455 0.00 0.00 0.00 1.85
104 105 3.694566 GTGACCACCATCCCAATCTAAAC 59.305 47.826 0.00 0.00 0.00 2.01
105 106 2.943033 GACCACCATCCCAATCTAAACG 59.057 50.000 0.00 0.00 0.00 3.60
106 107 2.297701 CCACCATCCCAATCTAAACGG 58.702 52.381 0.00 0.00 0.00 4.44
107 108 1.676006 CACCATCCCAATCTAAACGGC 59.324 52.381 0.00 0.00 0.00 5.68
108 109 1.283613 ACCATCCCAATCTAAACGGCA 59.716 47.619 0.00 0.00 0.00 5.69
109 110 1.676006 CCATCCCAATCTAAACGGCAC 59.324 52.381 0.00 0.00 0.00 5.01
127 128 4.403976 GGAAGCGACCGATGAGAC 57.596 61.111 0.00 0.00 0.00 3.36
128 129 1.227002 GGAAGCGACCGATGAGACC 60.227 63.158 0.00 0.00 0.00 3.85
129 130 1.227002 GAAGCGACCGATGAGACCC 60.227 63.158 0.00 0.00 0.00 4.46
130 131 1.668101 GAAGCGACCGATGAGACCCT 61.668 60.000 0.00 0.00 0.00 4.34
131 132 1.258445 AAGCGACCGATGAGACCCTT 61.258 55.000 0.00 0.00 0.00 3.95
132 133 1.218316 GCGACCGATGAGACCCTTT 59.782 57.895 0.00 0.00 0.00 3.11
133 134 1.084370 GCGACCGATGAGACCCTTTG 61.084 60.000 0.00 0.00 0.00 2.77
134 135 0.460284 CGACCGATGAGACCCTTTGG 60.460 60.000 0.00 0.00 37.80 3.28
151 152 6.560253 CCTTTGGGATTCTATATCAAACGG 57.440 41.667 0.00 0.00 33.58 4.44
152 153 5.048713 CCTTTGGGATTCTATATCAAACGGC 60.049 44.000 0.00 0.00 33.58 5.68
153 154 4.698201 TGGGATTCTATATCAAACGGCA 57.302 40.909 0.00 0.00 0.00 5.69
154 155 5.241403 TGGGATTCTATATCAAACGGCAT 57.759 39.130 0.00 0.00 0.00 4.40
155 156 5.003160 TGGGATTCTATATCAAACGGCATG 58.997 41.667 0.00 0.00 0.00 4.06
156 157 5.221823 TGGGATTCTATATCAAACGGCATGA 60.222 40.000 0.00 0.00 0.00 3.07
157 158 5.882557 GGGATTCTATATCAAACGGCATGAT 59.117 40.000 0.00 5.40 40.49 2.45
158 159 6.375455 GGGATTCTATATCAAACGGCATGATT 59.625 38.462 0.00 0.00 38.44 2.57
159 160 7.246311 GGATTCTATATCAAACGGCATGATTG 58.754 38.462 0.00 0.00 38.44 2.67
160 161 7.119699 GGATTCTATATCAAACGGCATGATTGA 59.880 37.037 0.00 1.44 42.63 2.57
162 163 7.984422 TCTATATCAAACGGCATGATTGATT 57.016 32.000 15.44 8.76 44.82 2.57
163 164 8.394971 TCTATATCAAACGGCATGATTGATTT 57.605 30.769 15.44 11.65 44.82 2.17
164 165 8.291740 TCTATATCAAACGGCATGATTGATTTG 58.708 33.333 15.44 10.16 44.82 2.32
165 166 4.780275 TCAAACGGCATGATTGATTTGA 57.220 36.364 0.00 2.10 34.79 2.69
166 167 4.484236 TCAAACGGCATGATTGATTTGAC 58.516 39.130 0.00 0.00 34.79 3.18
167 168 4.218200 TCAAACGGCATGATTGATTTGACT 59.782 37.500 0.00 0.00 34.79 3.41
168 169 4.789012 AACGGCATGATTGATTTGACTT 57.211 36.364 0.00 0.00 0.00 3.01
169 170 4.361451 ACGGCATGATTGATTTGACTTC 57.639 40.909 0.00 0.00 0.00 3.01
170 171 3.181507 ACGGCATGATTGATTTGACTTCG 60.182 43.478 0.00 0.00 0.00 3.79
171 172 3.181507 CGGCATGATTGATTTGACTTCGT 60.182 43.478 0.00 0.00 0.00 3.85
172 173 4.346129 GGCATGATTGATTTGACTTCGTC 58.654 43.478 0.00 0.00 0.00 4.20
173 174 4.346129 GCATGATTGATTTGACTTCGTCC 58.654 43.478 0.00 0.00 0.00 4.79
174 175 4.142622 GCATGATTGATTTGACTTCGTCCA 60.143 41.667 0.00 0.00 0.00 4.02
175 176 5.449588 GCATGATTGATTTGACTTCGTCCAT 60.450 40.000 0.00 0.00 0.00 3.41
176 177 6.558009 CATGATTGATTTGACTTCGTCCATT 58.442 36.000 0.00 0.00 0.00 3.16
177 178 6.182039 TGATTGATTTGACTTCGTCCATTC 57.818 37.500 0.00 0.00 0.00 2.67
178 179 4.661993 TTGATTTGACTTCGTCCATTCG 57.338 40.909 0.00 0.00 0.00 3.34
179 180 3.659786 TGATTTGACTTCGTCCATTCGT 58.340 40.909 0.00 0.00 0.00 3.85
180 181 3.678072 TGATTTGACTTCGTCCATTCGTC 59.322 43.478 0.00 0.00 0.00 4.20
181 182 1.693467 TTGACTTCGTCCATTCGTCG 58.307 50.000 0.00 0.00 0.00 5.12
182 183 0.594602 TGACTTCGTCCATTCGTCGT 59.405 50.000 0.00 0.00 0.00 4.34
183 184 1.001048 TGACTTCGTCCATTCGTCGTT 60.001 47.619 0.00 0.00 0.00 3.85
184 185 1.385743 GACTTCGTCCATTCGTCGTTG 59.614 52.381 0.00 0.00 0.00 4.10
185 186 1.269413 ACTTCGTCCATTCGTCGTTGT 60.269 47.619 0.00 0.00 0.00 3.32
186 187 2.030893 ACTTCGTCCATTCGTCGTTGTA 60.031 45.455 0.00 0.00 0.00 2.41
187 188 2.251869 TCGTCCATTCGTCGTTGTAG 57.748 50.000 0.00 0.00 0.00 2.74
188 189 1.536766 TCGTCCATTCGTCGTTGTAGT 59.463 47.619 0.00 0.00 0.00 2.73
189 190 1.647213 CGTCCATTCGTCGTTGTAGTG 59.353 52.381 0.00 0.00 0.00 2.74
190 191 2.669364 GTCCATTCGTCGTTGTAGTGT 58.331 47.619 0.00 0.00 0.00 3.55
191 192 2.660236 GTCCATTCGTCGTTGTAGTGTC 59.340 50.000 0.00 0.00 0.00 3.67
192 193 1.647213 CCATTCGTCGTTGTAGTGTCG 59.353 52.381 0.00 0.00 0.00 4.35
193 194 2.313234 CATTCGTCGTTGTAGTGTCGT 58.687 47.619 0.00 0.00 0.00 4.34
194 195 2.022808 TTCGTCGTTGTAGTGTCGTC 57.977 50.000 0.00 0.00 0.00 4.20
195 196 1.220529 TCGTCGTTGTAGTGTCGTCT 58.779 50.000 0.00 0.00 0.00 4.18
196 197 1.599071 TCGTCGTTGTAGTGTCGTCTT 59.401 47.619 0.00 0.00 0.00 3.01
197 198 1.967908 CGTCGTTGTAGTGTCGTCTTC 59.032 52.381 0.00 0.00 0.00 2.87
198 199 1.967908 GTCGTTGTAGTGTCGTCTTCG 59.032 52.381 0.00 0.00 38.55 3.79
199 200 1.866601 TCGTTGTAGTGTCGTCTTCGA 59.133 47.619 0.00 0.00 44.12 3.71
208 209 1.081641 TCGTCTTCGACAGTTCGGC 60.082 57.895 0.00 0.00 45.90 5.54
209 210 1.371267 CGTCTTCGACAGTTCGGCA 60.371 57.895 0.00 0.00 45.90 5.69
210 211 1.606350 CGTCTTCGACAGTTCGGCAC 61.606 60.000 0.00 0.00 45.90 5.01
211 212 1.006571 TCTTCGACAGTTCGGCACC 60.007 57.895 0.00 0.00 45.90 5.01
212 213 1.006102 CTTCGACAGTTCGGCACCT 60.006 57.895 0.00 0.00 45.90 4.00
213 214 1.006571 TTCGACAGTTCGGCACCTC 60.007 57.895 0.00 0.00 45.90 3.85
214 215 1.740332 TTCGACAGTTCGGCACCTCA 61.740 55.000 0.00 0.00 45.90 3.86
255 256 1.961180 GACGCTGCTCACCCTACCAT 61.961 60.000 0.00 0.00 0.00 3.55
256 257 1.221840 CGCTGCTCACCCTACCATT 59.778 57.895 0.00 0.00 0.00 3.16
352 368 2.189833 CGGATCACGTCTTCCTCCA 58.810 57.895 10.68 0.00 37.93 3.86
353 369 0.747255 CGGATCACGTCTTCCTCCAT 59.253 55.000 10.68 0.00 37.93 3.41
359 375 0.608640 ACGTCTTCCTCCATCGCTTT 59.391 50.000 0.00 0.00 0.00 3.51
362 378 0.895530 TCTTCCTCCATCGCTTTCGT 59.104 50.000 0.00 0.00 36.96 3.85
366 382 1.741401 CTCCATCGCTTTCGTGCCA 60.741 57.895 0.00 0.00 36.96 4.92
373 389 2.281761 CTTTCGTGCCAGCCACCT 60.282 61.111 0.00 0.00 41.53 4.00
374 390 1.898574 CTTTCGTGCCAGCCACCTT 60.899 57.895 0.00 0.00 41.53 3.50
376 392 2.337879 TTTCGTGCCAGCCACCTTCT 62.338 55.000 0.00 0.00 41.53 2.85
399 415 2.158842 CCTCTCCTGGGCATACTTTCTG 60.159 54.545 0.00 0.00 0.00 3.02
421 446 3.909086 GAAGCAGCCGGAACCAGCT 62.909 63.158 5.05 2.73 40.89 4.24
491 528 1.586154 CTTTGGCCGGATTTCACGCT 61.586 55.000 5.05 0.00 0.00 5.07
545 582 2.184322 CGCTGGTGTAGGCGTGAT 59.816 61.111 0.00 0.00 45.34 3.06
607 645 3.448267 CAGATTCAGCTGCCTCGAA 57.552 52.632 9.47 0.00 0.00 3.71
609 647 1.865970 CAGATTCAGCTGCCTCGAATC 59.134 52.381 20.64 20.64 43.44 2.52
619 657 2.511452 CCTCGAATCGGCCAGGGAT 61.511 63.158 2.24 0.00 0.00 3.85
631 669 1.153208 CAGGGATCTGGCTGTCTGC 60.153 63.158 0.00 0.00 37.36 4.26
647 685 3.152400 GCGATCCCCTGTACCGGT 61.152 66.667 13.98 13.98 0.00 5.28
667 705 2.693591 GTGCTACATCCTGCTACCTGTA 59.306 50.000 0.00 0.00 0.00 2.74
689 727 4.253257 CCGACGACCTAGCCGCTC 62.253 72.222 0.00 0.00 0.00 5.03
756 794 3.866582 GGCCGTCCAGGATGAGGG 61.867 72.222 10.65 2.50 45.00 4.30
805 843 1.321805 TGCAGTGCACAACCAAGCTT 61.322 50.000 21.04 0.00 31.71 3.74
829 867 4.648762 GTCCTCATCATCTTCTCTTCAGGA 59.351 45.833 0.00 0.00 0.00 3.86
839 883 3.388552 TCTCTTCAGGATCAGGTGCTA 57.611 47.619 0.00 0.00 0.00 3.49
854 898 1.134699 GTGCTAGACAGTGGCATGCTA 60.135 52.381 18.92 9.16 45.61 3.49
876 920 8.747471 TGCTATTACATTTGACAATTGGATCAA 58.253 29.630 10.83 8.77 33.03 2.57
886 930 4.824289 ACAATTGGATCAATTTGCTCACC 58.176 39.130 10.83 0.00 40.60 4.02
909 953 3.650950 GGCCAACCCAGCTCCAGA 61.651 66.667 0.00 0.00 0.00 3.86
914 958 1.071471 AACCCAGCTCCAGACAACG 59.929 57.895 0.00 0.00 0.00 4.10
939 984 4.823419 TCGTAATGGTGGCCGCGG 62.823 66.667 24.05 24.05 0.00 6.46
971 1016 7.368059 CACTATGCATACGGATACTTCTGTTA 58.632 38.462 1.16 0.00 41.74 2.41
986 1049 3.815809 TCTGTTAGGCATTTTATCCGGG 58.184 45.455 0.00 0.00 0.00 5.73
1015 1084 1.131218 CTCATGCTTGACACACGCG 59.869 57.895 3.53 3.53 31.06 6.01
1056 1131 2.282462 CTCCCACCTGGCACCAAC 60.282 66.667 0.00 0.00 0.00 3.77
1065 1140 1.959985 CCTGGCACCAACAATACACAA 59.040 47.619 0.00 0.00 0.00 3.33
1114 1189 8.712228 AGGAAGGATTGGGATGTTTATTAATC 57.288 34.615 0.00 0.00 0.00 1.75
1117 1192 8.482852 AAGGATTGGGATGTTTATTAATCAGG 57.517 34.615 0.00 0.00 0.00 3.86
1120 1195 9.753674 GGATTGGGATGTTTATTAATCAGGATA 57.246 33.333 0.00 0.00 0.00 2.59
1163 1238 5.988310 AATCTGTTGCAAAATGATGGAGA 57.012 34.783 0.00 0.00 0.00 3.71
1177 1252 2.291209 TGGAGATGGTGCAATGTTGT 57.709 45.000 0.00 0.00 0.00 3.32
1186 1261 2.603652 GGTGCAATGTTGTGGAACGTAC 60.604 50.000 0.00 0.00 42.39 3.67
1249 1325 0.394565 GCATAGCAACGAGAGGGGAT 59.605 55.000 0.00 0.00 0.00 3.85
1383 1460 2.542178 TCCGATTTCAACACACGTTCAG 59.458 45.455 0.00 0.00 31.13 3.02
1438 1515 2.434702 AGTGTTGAGGGAGAGTTTCGTT 59.565 45.455 0.00 0.00 0.00 3.85
1535 1612 1.518367 GTGGATTATGGTGGAGGGGA 58.482 55.000 0.00 0.00 0.00 4.81
1627 1707 2.637640 GGAGTGGAGGAGGGGGAGA 61.638 68.421 0.00 0.00 0.00 3.71
1686 1766 2.910579 CCACCGGGAGTAGGATTCA 58.089 57.895 6.32 0.00 35.59 2.57
1687 1767 1.424638 CCACCGGGAGTAGGATTCAT 58.575 55.000 6.32 0.00 35.59 2.57
1730 1810 2.772515 GCCCTTCCATGTAGTAGGAGTT 59.227 50.000 0.00 0.00 34.91 3.01
1766 1846 3.422796 GGAAGGGAAAAGGAGAAGGAAC 58.577 50.000 0.00 0.00 0.00 3.62
1861 1946 0.830648 CTCTCCTTTCCCGTATGGCA 59.169 55.000 0.00 0.00 0.00 4.92
2183 2269 1.074405 TGGATGCTCATATTGGCTCCC 59.926 52.381 0.00 0.00 0.00 4.30
2205 2291 7.792032 TCCCACATATTCTACGAAGATCTTTT 58.208 34.615 9.87 2.61 0.00 2.27
2269 2355 1.805120 CGGTATGTTACTTGCCCGAGG 60.805 57.143 0.00 0.00 37.66 4.63
2272 2358 2.579410 ATGTTACTTGCCCGAGGTTT 57.421 45.000 0.00 0.00 0.00 3.27
2501 2588 1.551452 GGAGACACCTGTAGAGCACT 58.449 55.000 0.00 0.00 35.41 4.40
2536 2623 4.278858 CAGTTATGTTGTGACGTTTGGTG 58.721 43.478 0.00 0.00 0.00 4.17
2712 2799 6.601217 TGATGTGATCCCGTTAATCAAATGAA 59.399 34.615 0.00 0.00 32.39 2.57
2922 3010 5.251764 CCTCTAGGGCATATTTCCTTCATG 58.748 45.833 0.00 0.00 34.75 3.07
2923 3011 4.655963 TCTAGGGCATATTTCCTTCATGC 58.344 43.478 0.00 0.00 43.43 4.06
2924 3012 3.317455 AGGGCATATTTCCTTCATGCA 57.683 42.857 7.94 0.00 45.45 3.96
2925 3013 3.645434 AGGGCATATTTCCTTCATGCAA 58.355 40.909 7.94 0.00 45.45 4.08
2926 3014 3.640029 AGGGCATATTTCCTTCATGCAAG 59.360 43.478 7.94 0.00 45.45 4.01
2927 3015 3.385755 GGGCATATTTCCTTCATGCAAGT 59.614 43.478 7.94 0.00 45.45 3.16
2962 3050 3.426615 AGGCAATGTTCAATTTACCCGA 58.573 40.909 0.00 0.00 0.00 5.14
2976 3067 8.842280 TCAATTTACCCGAAAATAATCGCTATT 58.158 29.630 0.00 0.00 41.40 1.73
2982 3073 5.049405 CCCGAAAATAATCGCTATTTGCTCT 60.049 40.000 3.88 0.00 38.94 4.09
2988 3079 0.035534 TCGCTATTTGCTCTTGGGCA 60.036 50.000 0.00 0.00 40.74 5.36
2993 3084 5.164129 GCTATTTGCTCTTGGGCATAGCC 62.164 52.174 14.01 0.00 41.29 3.93
3025 3116 0.543749 CTCCTACAAGGGCTTCCAGG 59.456 60.000 0.00 0.00 35.59 4.45
3030 3121 1.301293 CAAGGGCTTCCAGGAGACC 59.699 63.158 3.11 3.11 45.88 3.85
3033 3127 4.475135 GGCTTCCAGGAGACCGGC 62.475 72.222 0.00 0.00 0.00 6.13
3040 3134 0.533755 CCAGGAGACCGGCATTCATC 60.534 60.000 0.00 0.00 0.00 2.92
3042 3139 0.692419 AGGAGACCGGCATTCATCCT 60.692 55.000 0.00 2.32 32.31 3.24
3050 3147 0.749049 GGCATTCATCCTCTTTGGCC 59.251 55.000 0.00 0.00 35.26 5.36
3054 3151 2.577606 TTCATCCTCTTTGGCCGAAA 57.422 45.000 6.92 3.63 35.26 3.46
3055 3152 2.577606 TCATCCTCTTTGGCCGAAAA 57.422 45.000 6.92 0.00 35.26 2.29
3057 3154 1.474077 CATCCTCTTTGGCCGAAAAGG 59.526 52.381 18.21 18.21 44.97 3.11
3058 3155 0.768622 TCCTCTTTGGCCGAAAAGGA 59.231 50.000 22.29 22.29 43.43 3.36
3063 3160 1.269723 CTTTGGCCGAAAAGGAAGACC 59.730 52.381 6.92 0.00 45.00 3.85
3066 3163 1.004200 GCCGAAAAGGAAGACCCGA 60.004 57.895 0.00 0.00 45.00 5.14
3068 3165 1.154197 CCGAAAAGGAAGACCCGAAC 58.846 55.000 0.00 0.00 45.00 3.95
3101 3198 5.163874 GCTGAATCTGAAGACTTTACAGCTG 60.164 44.000 13.48 13.48 42.85 4.24
3124 3221 4.072131 GAGTGGTTCCTTGCATCAAAGTA 58.928 43.478 0.00 0.00 0.00 2.24
3132 3229 4.887071 TCCTTGCATCAAAGTACAACAACT 59.113 37.500 0.00 0.00 0.00 3.16
3134 3231 5.687285 CCTTGCATCAAAGTACAACAACTTC 59.313 40.000 0.00 0.00 38.76 3.01
3136 3233 4.572795 TGCATCAAAGTACAACAACTTCGA 59.427 37.500 0.00 0.00 38.76 3.71
3141 3238 4.732285 AAGTACAACAACTTCGATGCTG 57.268 40.909 0.00 0.00 34.60 4.41
3176 3273 1.279496 TCCCACCATCCTTGTCTCTG 58.721 55.000 0.00 0.00 0.00 3.35
3186 3283 2.439507 TCCTTGTCTCTGCCAACTCTTT 59.560 45.455 0.00 0.00 0.00 2.52
3196 3293 4.012374 CTGCCAACTCTTTGACATGGTAT 58.988 43.478 0.00 0.00 34.24 2.73
3208 3305 3.519107 TGACATGGTATCCTTGCTCTCAA 59.481 43.478 0.00 0.00 32.73 3.02
3213 3310 7.977818 ACATGGTATCCTTGCTCTCAATATTA 58.022 34.615 0.00 0.00 32.73 0.98
3245 3342 6.631016 TGTACTTTGCACTCTATAGGACTTG 58.369 40.000 0.00 0.00 0.00 3.16
3246 3343 5.746990 ACTTTGCACTCTATAGGACTTGT 57.253 39.130 0.00 0.00 0.00 3.16
3283 3381 9.162764 CTTTACACAGGTATTAATAGTGTGCTT 57.837 33.333 24.93 15.69 42.73 3.91
3323 3422 8.588290 TTTTACCAAATAGTTATCCATGCAGT 57.412 30.769 0.00 0.00 0.00 4.40
3350 3449 8.362464 TGAAAAGCTGTAGAACTTAGGAGATA 57.638 34.615 0.00 0.00 0.00 1.98
3351 3450 8.982723 TGAAAAGCTGTAGAACTTAGGAGATAT 58.017 33.333 0.00 0.00 0.00 1.63
3354 3453 8.998277 AAGCTGTAGAACTTAGGAGATATACA 57.002 34.615 0.00 0.00 0.00 2.29
3355 3454 9.594936 AAGCTGTAGAACTTAGGAGATATACAT 57.405 33.333 0.00 0.00 0.00 2.29
3378 3477 8.982723 ACATATACTTGACACTATTTGGAGACT 58.017 33.333 0.00 0.00 0.00 3.24
3382 3481 6.565234 ACTTGACACTATTTGGAGACTATCG 58.435 40.000 0.00 0.00 0.00 2.92
3383 3482 6.153000 ACTTGACACTATTTGGAGACTATCGT 59.847 38.462 0.00 0.00 0.00 3.73
3384 3483 7.338703 ACTTGACACTATTTGGAGACTATCGTA 59.661 37.037 0.00 0.00 0.00 3.43
3385 3484 7.024340 TGACACTATTTGGAGACTATCGTAC 57.976 40.000 0.00 0.00 0.00 3.67
3386 3485 6.600427 TGACACTATTTGGAGACTATCGTACA 59.400 38.462 0.00 0.00 0.00 2.90
3387 3486 7.121611 TGACACTATTTGGAGACTATCGTACAA 59.878 37.037 0.00 0.00 0.00 2.41
3388 3487 7.833786 ACACTATTTGGAGACTATCGTACAAA 58.166 34.615 0.00 0.00 33.11 2.83
3389 3488 8.475639 ACACTATTTGGAGACTATCGTACAAAT 58.524 33.333 0.00 0.00 40.41 2.32
3390 3489 9.961265 CACTATTTGGAGACTATCGTACAAATA 57.039 33.333 0.00 0.00 38.82 1.40
3394 3493 9.661563 ATTTGGAGACTATCGTACAAATAAACA 57.338 29.630 0.00 0.00 36.93 2.83
3395 3494 9.491675 TTTGGAGACTATCGTACAAATAAACAA 57.508 29.630 0.00 0.00 0.00 2.83
3396 3495 9.491675 TTGGAGACTATCGTACAAATAAACAAA 57.508 29.630 0.00 0.00 0.00 2.83
3397 3496 9.146984 TGGAGACTATCGTACAAATAAACAAAG 57.853 33.333 0.00 0.00 0.00 2.77
3398 3497 8.114905 GGAGACTATCGTACAAATAAACAAAGC 58.885 37.037 0.00 0.00 0.00 3.51
3399 3498 8.542497 AGACTATCGTACAAATAAACAAAGCA 57.458 30.769 0.00 0.00 0.00 3.91
3400 3499 8.656849 AGACTATCGTACAAATAAACAAAGCAG 58.343 33.333 0.00 0.00 0.00 4.24
3401 3500 7.241376 ACTATCGTACAAATAAACAAAGCAGC 58.759 34.615 0.00 0.00 0.00 5.25
3402 3501 5.425577 TCGTACAAATAAACAAAGCAGCA 57.574 34.783 0.00 0.00 0.00 4.41
3403 3502 6.007936 TCGTACAAATAAACAAAGCAGCAT 57.992 33.333 0.00 0.00 0.00 3.79
3404 3503 6.083630 TCGTACAAATAAACAAAGCAGCATC 58.916 36.000 0.00 0.00 0.00 3.91
3405 3504 5.855925 CGTACAAATAAACAAAGCAGCATCA 59.144 36.000 0.00 0.00 0.00 3.07
3406 3505 6.527722 CGTACAAATAAACAAAGCAGCATCAT 59.472 34.615 0.00 0.00 0.00 2.45
3407 3506 7.696035 CGTACAAATAAACAAAGCAGCATCATA 59.304 33.333 0.00 0.00 0.00 2.15
3408 3507 9.520204 GTACAAATAAACAAAGCAGCATCATAT 57.480 29.630 0.00 0.00 0.00 1.78
3410 3509 9.439500 ACAAATAAACAAAGCAGCATCATATTT 57.561 25.926 0.00 0.00 0.00 1.40
3413 3512 9.880157 AATAAACAAAGCAGCATCATATTTTCT 57.120 25.926 0.00 0.00 0.00 2.52
3414 3513 9.880157 ATAAACAAAGCAGCATCATATTTTCTT 57.120 25.926 0.00 0.00 0.00 2.52
3415 3514 8.611654 AAACAAAGCAGCATCATATTTTCTTT 57.388 26.923 0.00 0.00 0.00 2.52
3416 3515 8.611654 AACAAAGCAGCATCATATTTTCTTTT 57.388 26.923 0.00 0.00 0.00 2.27
3417 3516 8.611654 ACAAAGCAGCATCATATTTTCTTTTT 57.388 26.923 0.00 0.00 0.00 1.94
3418 3517 8.715088 ACAAAGCAGCATCATATTTTCTTTTTC 58.285 29.630 0.00 0.00 0.00 2.29
3419 3518 8.932791 CAAAGCAGCATCATATTTTCTTTTTCT 58.067 29.630 0.00 0.00 0.00 2.52
3585 3684 4.392940 AGCACACTATCTTGTTCTGCTTT 58.607 39.130 0.00 0.00 31.14 3.51
3643 3742 1.482593 CATGGTCTAAGCCCGTCTCTT 59.517 52.381 0.00 0.00 0.00 2.85
3888 3989 5.583854 GGATAGATGATGCGCAATAACATCT 59.416 40.000 32.73 32.73 45.85 2.90
3890 3991 7.042858 GGATAGATGATGCGCAATAACATCTAG 60.043 40.741 34.17 0.00 46.38 2.43
3912 4013 5.388654 AGGAACAACATTTCTCATGGTTCT 58.611 37.500 0.00 0.00 34.96 3.01
4144 4251 1.681793 CCCACTCGGAGTGTATACAGG 59.318 57.143 30.32 21.17 44.50 4.00
4158 4265 9.614792 GAGTGTATACAGGAATATTTTTGTCCT 57.385 33.333 5.62 0.00 42.72 3.85
4177 4284 2.299013 CCTAGTTGTCAGTGCCACACTA 59.701 50.000 0.00 0.00 43.43 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.999679 TGAGACTTCAAATCTGTTGTTTGATT 58.000 30.769 2.57 0.00 43.00 2.57
1 2 7.572523 TGAGACTTCAAATCTGTTGTTTGAT 57.427 32.000 2.57 0.00 43.00 2.57
2 3 7.572523 ATGAGACTTCAAATCTGTTGTTTGA 57.427 32.000 0.00 0.00 42.14 2.69
3 4 7.805071 GGTATGAGACTTCAAATCTGTTGTTTG 59.195 37.037 0.00 0.00 36.78 2.93
4 5 7.040409 GGGTATGAGACTTCAAATCTGTTGTTT 60.040 37.037 0.00 0.00 36.78 2.83
6 7 5.940470 GGGTATGAGACTTCAAATCTGTTGT 59.060 40.000 0.00 0.00 36.78 3.32
8 9 5.251700 AGGGGTATGAGACTTCAAATCTGTT 59.748 40.000 0.00 0.00 36.78 3.16
9 10 4.785376 AGGGGTATGAGACTTCAAATCTGT 59.215 41.667 0.00 0.00 36.78 3.41
10 11 5.365021 AGGGGTATGAGACTTCAAATCTG 57.635 43.478 0.00 0.00 36.78 2.90
11 12 5.488919 TGAAGGGGTATGAGACTTCAAATCT 59.511 40.000 0.00 0.00 44.32 2.40
12 13 5.745227 TGAAGGGGTATGAGACTTCAAATC 58.255 41.667 0.00 0.00 44.32 2.17
13 14 5.779241 TGAAGGGGTATGAGACTTCAAAT 57.221 39.130 0.00 0.00 44.32 2.32
16 17 5.339200 GGAATTGAAGGGGTATGAGACTTCA 60.339 44.000 0.00 0.00 45.24 3.02
17 18 5.126779 GGAATTGAAGGGGTATGAGACTTC 58.873 45.833 0.00 0.00 39.70 3.01
18 19 4.079730 GGGAATTGAAGGGGTATGAGACTT 60.080 45.833 0.00 0.00 0.00 3.01
19 20 3.459969 GGGAATTGAAGGGGTATGAGACT 59.540 47.826 0.00 0.00 0.00 3.24
20 21 3.202151 TGGGAATTGAAGGGGTATGAGAC 59.798 47.826 0.00 0.00 0.00 3.36
21 22 3.469859 TGGGAATTGAAGGGGTATGAGA 58.530 45.455 0.00 0.00 0.00 3.27
22 23 3.951563 TGGGAATTGAAGGGGTATGAG 57.048 47.619 0.00 0.00 0.00 2.90
23 24 4.387437 GGAATGGGAATTGAAGGGGTATGA 60.387 45.833 0.00 0.00 0.00 2.15
24 25 3.897505 GGAATGGGAATTGAAGGGGTATG 59.102 47.826 0.00 0.00 0.00 2.39
25 26 3.116746 GGGAATGGGAATTGAAGGGGTAT 60.117 47.826 0.00 0.00 0.00 2.73
26 27 2.246327 GGGAATGGGAATTGAAGGGGTA 59.754 50.000 0.00 0.00 0.00 3.69
27 28 1.008327 GGGAATGGGAATTGAAGGGGT 59.992 52.381 0.00 0.00 0.00 4.95
28 29 1.291939 AGGGAATGGGAATTGAAGGGG 59.708 52.381 0.00 0.00 0.00 4.79
29 30 2.854736 AGGGAATGGGAATTGAAGGG 57.145 50.000 0.00 0.00 0.00 3.95
30 31 3.205282 AGGTAGGGAATGGGAATTGAAGG 59.795 47.826 0.00 0.00 0.00 3.46
31 32 4.526438 AGGTAGGGAATGGGAATTGAAG 57.474 45.455 0.00 0.00 0.00 3.02
32 33 4.965283 AAGGTAGGGAATGGGAATTGAA 57.035 40.909 0.00 0.00 0.00 2.69
33 34 4.293634 TCAAAGGTAGGGAATGGGAATTGA 59.706 41.667 0.00 0.00 0.00 2.57
34 35 4.609301 TCAAAGGTAGGGAATGGGAATTG 58.391 43.478 0.00 0.00 0.00 2.32
35 36 4.965283 TCAAAGGTAGGGAATGGGAATT 57.035 40.909 0.00 0.00 0.00 2.17
36 37 5.487861 AATCAAAGGTAGGGAATGGGAAT 57.512 39.130 0.00 0.00 0.00 3.01
37 38 4.965283 AATCAAAGGTAGGGAATGGGAA 57.035 40.909 0.00 0.00 0.00 3.97
38 39 4.141574 CGTAATCAAAGGTAGGGAATGGGA 60.142 45.833 0.00 0.00 0.00 4.37
39 40 4.134563 CGTAATCAAAGGTAGGGAATGGG 58.865 47.826 0.00 0.00 0.00 4.00
40 41 3.564225 GCGTAATCAAAGGTAGGGAATGG 59.436 47.826 0.00 0.00 0.00 3.16
41 42 3.564225 GGCGTAATCAAAGGTAGGGAATG 59.436 47.826 0.00 0.00 0.00 2.67
42 43 3.434596 GGGCGTAATCAAAGGTAGGGAAT 60.435 47.826 0.00 0.00 0.00 3.01
43 44 2.092807 GGGCGTAATCAAAGGTAGGGAA 60.093 50.000 0.00 0.00 0.00 3.97
44 45 1.487558 GGGCGTAATCAAAGGTAGGGA 59.512 52.381 0.00 0.00 0.00 4.20
45 46 1.210967 TGGGCGTAATCAAAGGTAGGG 59.789 52.381 0.00 0.00 0.00 3.53
46 47 2.681344 GTTGGGCGTAATCAAAGGTAGG 59.319 50.000 0.00 0.00 0.00 3.18
47 48 2.681344 GGTTGGGCGTAATCAAAGGTAG 59.319 50.000 0.00 0.00 0.00 3.18
48 49 2.040012 TGGTTGGGCGTAATCAAAGGTA 59.960 45.455 0.00 0.00 0.00 3.08
49 50 1.202952 TGGTTGGGCGTAATCAAAGGT 60.203 47.619 0.00 0.00 0.00 3.50
50 51 1.540267 TGGTTGGGCGTAATCAAAGG 58.460 50.000 0.00 0.00 0.00 3.11
51 52 3.243569 TGTTTGGTTGGGCGTAATCAAAG 60.244 43.478 10.56 0.00 40.27 2.77
52 53 2.693591 TGTTTGGTTGGGCGTAATCAAA 59.306 40.909 7.26 7.26 38.08 2.69
53 54 2.034812 GTGTTTGGTTGGGCGTAATCAA 59.965 45.455 0.00 0.00 0.00 2.57
54 55 1.609555 GTGTTTGGTTGGGCGTAATCA 59.390 47.619 0.00 0.00 0.00 2.57
55 56 1.400500 CGTGTTTGGTTGGGCGTAATC 60.400 52.381 0.00 0.00 0.00 1.75
56 57 0.594110 CGTGTTTGGTTGGGCGTAAT 59.406 50.000 0.00 0.00 0.00 1.89
57 58 2.023318 CGTGTTTGGTTGGGCGTAA 58.977 52.632 0.00 0.00 0.00 3.18
58 59 2.544698 GCGTGTTTGGTTGGGCGTA 61.545 57.895 0.00 0.00 0.00 4.42
59 60 3.894947 GCGTGTTTGGTTGGGCGT 61.895 61.111 0.00 0.00 0.00 5.68
60 61 3.591835 AGCGTGTTTGGTTGGGCG 61.592 61.111 0.00 0.00 0.00 6.13
61 62 2.027460 CAGCGTGTTTGGTTGGGC 59.973 61.111 0.00 0.00 0.00 5.36
62 63 1.065600 CACAGCGTGTTTGGTTGGG 59.934 57.895 1.24 0.00 0.00 4.12
63 64 1.065600 CCACAGCGTGTTTGGTTGG 59.934 57.895 7.68 0.00 0.00 3.77
64 65 1.065600 CCCACAGCGTGTTTGGTTG 59.934 57.895 7.68 0.00 0.00 3.77
65 66 1.379309 ACCCACAGCGTGTTTGGTT 60.379 52.632 7.68 0.00 31.07 3.67
66 67 2.118404 CACCCACAGCGTGTTTGGT 61.118 57.895 7.68 5.49 34.34 3.67
67 68 1.821759 TCACCCACAGCGTGTTTGG 60.822 57.895 7.68 4.98 32.86 3.28
68 69 1.355210 GTCACCCACAGCGTGTTTG 59.645 57.895 7.68 4.84 32.86 2.93
69 70 1.822186 GGTCACCCACAGCGTGTTT 60.822 57.895 7.68 0.00 32.86 2.83
70 71 2.203153 GGTCACCCACAGCGTGTT 60.203 61.111 7.68 0.00 32.86 3.32
71 72 3.475494 TGGTCACCCACAGCGTGT 61.475 61.111 0.00 0.00 35.17 4.49
82 83 3.644966 TTAGATTGGGATGGTGGTCAC 57.355 47.619 0.00 0.00 0.00 3.67
83 84 3.621214 CGTTTAGATTGGGATGGTGGTCA 60.621 47.826 0.00 0.00 0.00 4.02
84 85 2.943033 CGTTTAGATTGGGATGGTGGTC 59.057 50.000 0.00 0.00 0.00 4.02
85 86 2.356741 CCGTTTAGATTGGGATGGTGGT 60.357 50.000 0.00 0.00 0.00 4.16
86 87 2.297701 CCGTTTAGATTGGGATGGTGG 58.702 52.381 0.00 0.00 0.00 4.61
87 88 1.676006 GCCGTTTAGATTGGGATGGTG 59.324 52.381 0.00 0.00 0.00 4.17
88 89 1.283613 TGCCGTTTAGATTGGGATGGT 59.716 47.619 0.00 0.00 0.00 3.55
89 90 1.676006 GTGCCGTTTAGATTGGGATGG 59.324 52.381 0.00 0.00 0.00 3.51
90 91 1.330521 CGTGCCGTTTAGATTGGGATG 59.669 52.381 0.00 0.00 0.00 3.51
91 92 1.663695 CGTGCCGTTTAGATTGGGAT 58.336 50.000 0.00 0.00 0.00 3.85
92 93 0.391927 CCGTGCCGTTTAGATTGGGA 60.392 55.000 0.00 0.00 0.00 4.37
93 94 0.391927 TCCGTGCCGTTTAGATTGGG 60.392 55.000 0.00 0.00 0.00 4.12
94 95 1.396996 CTTCCGTGCCGTTTAGATTGG 59.603 52.381 0.00 0.00 0.00 3.16
95 96 1.202031 GCTTCCGTGCCGTTTAGATTG 60.202 52.381 0.00 0.00 0.00 2.67
96 97 1.084289 GCTTCCGTGCCGTTTAGATT 58.916 50.000 0.00 0.00 0.00 2.40
97 98 1.082117 CGCTTCCGTGCCGTTTAGAT 61.082 55.000 0.00 0.00 0.00 1.98
98 99 1.735198 CGCTTCCGTGCCGTTTAGA 60.735 57.895 0.00 0.00 0.00 2.10
99 100 1.735198 TCGCTTCCGTGCCGTTTAG 60.735 57.895 0.00 0.00 35.54 1.85
100 101 2.023223 GTCGCTTCCGTGCCGTTTA 61.023 57.895 0.00 0.00 35.54 2.01
101 102 3.343421 GTCGCTTCCGTGCCGTTT 61.343 61.111 0.00 0.00 35.54 3.60
110 111 1.227002 GGTCTCATCGGTCGCTTCC 60.227 63.158 0.00 0.00 0.00 3.46
111 112 1.227002 GGGTCTCATCGGTCGCTTC 60.227 63.158 0.00 0.00 0.00 3.86
112 113 1.258445 AAGGGTCTCATCGGTCGCTT 61.258 55.000 0.00 0.00 0.00 4.68
113 114 1.258445 AAAGGGTCTCATCGGTCGCT 61.258 55.000 0.00 0.00 0.00 4.93
114 115 1.084370 CAAAGGGTCTCATCGGTCGC 61.084 60.000 0.00 0.00 0.00 5.19
115 116 0.460284 CCAAAGGGTCTCATCGGTCG 60.460 60.000 0.00 0.00 0.00 4.79
116 117 0.107654 CCCAAAGGGTCTCATCGGTC 60.108 60.000 0.00 0.00 38.25 4.79
117 118 0.546747 TCCCAAAGGGTCTCATCGGT 60.547 55.000 1.36 0.00 44.74 4.69
118 119 0.839946 ATCCCAAAGGGTCTCATCGG 59.160 55.000 1.36 0.00 44.74 4.18
119 120 2.171448 AGAATCCCAAAGGGTCTCATCG 59.829 50.000 1.36 0.00 44.74 3.84
120 121 3.941704 AGAATCCCAAAGGGTCTCATC 57.058 47.619 1.36 0.00 44.74 2.92
121 122 6.794493 TGATATAGAATCCCAAAGGGTCTCAT 59.206 38.462 1.36 0.00 44.74 2.90
122 123 6.150332 TGATATAGAATCCCAAAGGGTCTCA 58.850 40.000 1.36 0.00 44.74 3.27
123 124 6.688073 TGATATAGAATCCCAAAGGGTCTC 57.312 41.667 1.36 0.50 44.74 3.36
124 125 7.290813 GTTTGATATAGAATCCCAAAGGGTCT 58.709 38.462 1.36 1.41 44.74 3.85
125 126 6.204882 CGTTTGATATAGAATCCCAAAGGGTC 59.795 42.308 1.36 0.00 44.74 4.46
126 127 6.062095 CGTTTGATATAGAATCCCAAAGGGT 58.938 40.000 1.36 0.00 44.74 4.34
127 128 5.473504 CCGTTTGATATAGAATCCCAAAGGG 59.526 44.000 0.00 0.00 46.11 3.95
128 129 5.048713 GCCGTTTGATATAGAATCCCAAAGG 60.049 44.000 0.00 0.00 34.40 3.11
129 130 5.530915 TGCCGTTTGATATAGAATCCCAAAG 59.469 40.000 0.00 0.00 0.00 2.77
130 131 5.441500 TGCCGTTTGATATAGAATCCCAAA 58.558 37.500 0.00 0.00 0.00 3.28
131 132 5.042463 TGCCGTTTGATATAGAATCCCAA 57.958 39.130 0.00 0.00 0.00 4.12
132 133 4.698201 TGCCGTTTGATATAGAATCCCA 57.302 40.909 0.00 0.00 0.00 4.37
133 134 5.245531 TCATGCCGTTTGATATAGAATCCC 58.754 41.667 0.00 0.00 0.00 3.85
134 135 6.992063 ATCATGCCGTTTGATATAGAATCC 57.008 37.500 0.00 0.00 32.13 3.01
135 136 8.032952 TCAATCATGCCGTTTGATATAGAATC 57.967 34.615 0.00 0.00 33.52 2.52
136 137 7.984422 TCAATCATGCCGTTTGATATAGAAT 57.016 32.000 0.00 0.00 33.52 2.40
137 138 7.984422 ATCAATCATGCCGTTTGATATAGAA 57.016 32.000 9.71 0.00 40.63 2.10
138 139 7.984422 AATCAATCATGCCGTTTGATATAGA 57.016 32.000 11.06 1.61 41.24 1.98
139 140 8.291740 TCAAATCAATCATGCCGTTTGATATAG 58.708 33.333 11.06 6.80 41.24 1.31
140 141 8.075574 GTCAAATCAATCATGCCGTTTGATATA 58.924 33.333 11.06 0.00 41.24 0.86
141 142 6.919662 GTCAAATCAATCATGCCGTTTGATAT 59.080 34.615 11.06 0.00 41.24 1.63
142 143 6.095300 AGTCAAATCAATCATGCCGTTTGATA 59.905 34.615 11.06 0.00 41.24 2.15
143 144 5.104374 GTCAAATCAATCATGCCGTTTGAT 58.896 37.500 11.72 9.46 43.04 2.57
144 145 4.218200 AGTCAAATCAATCATGCCGTTTGA 59.782 37.500 0.00 0.00 37.64 2.69
145 146 4.487948 AGTCAAATCAATCATGCCGTTTG 58.512 39.130 0.00 0.00 0.00 2.93
146 147 4.789012 AGTCAAATCAATCATGCCGTTT 57.211 36.364 0.00 0.00 0.00 3.60
147 148 4.672542 CGAAGTCAAATCAATCATGCCGTT 60.673 41.667 0.00 0.00 0.00 4.44
148 149 3.181507 CGAAGTCAAATCAATCATGCCGT 60.182 43.478 0.00 0.00 0.00 5.68
149 150 3.181507 ACGAAGTCAAATCAATCATGCCG 60.182 43.478 0.00 0.00 29.74 5.69
150 151 4.361451 ACGAAGTCAAATCAATCATGCC 57.639 40.909 0.00 0.00 29.74 4.40
166 167 1.415374 ACAACGACGAATGGACGAAG 58.585 50.000 0.00 0.00 37.03 3.79
167 168 2.030893 ACTACAACGACGAATGGACGAA 60.031 45.455 0.00 0.00 37.03 3.85
168 169 1.536766 ACTACAACGACGAATGGACGA 59.463 47.619 0.00 0.00 37.03 4.20
169 170 1.647213 CACTACAACGACGAATGGACG 59.353 52.381 0.00 0.00 39.31 4.79
170 171 2.660236 GACACTACAACGACGAATGGAC 59.340 50.000 0.00 0.00 0.00 4.02
171 172 2.666344 CGACACTACAACGACGAATGGA 60.666 50.000 0.00 0.00 0.00 3.41
172 173 1.647213 CGACACTACAACGACGAATGG 59.353 52.381 0.00 0.00 0.00 3.16
173 174 2.313234 ACGACACTACAACGACGAATG 58.687 47.619 0.00 2.61 0.00 2.67
174 175 2.225019 AGACGACACTACAACGACGAAT 59.775 45.455 0.00 0.00 0.00 3.34
175 176 1.599071 AGACGACACTACAACGACGAA 59.401 47.619 0.00 0.00 0.00 3.85
176 177 1.220529 AGACGACACTACAACGACGA 58.779 50.000 0.00 0.00 0.00 4.20
177 178 1.967908 GAAGACGACACTACAACGACG 59.032 52.381 0.00 0.00 0.00 5.12
178 179 1.967908 CGAAGACGACACTACAACGAC 59.032 52.381 0.00 0.00 42.66 4.34
179 180 1.866601 TCGAAGACGACACTACAACGA 59.133 47.619 0.00 0.00 43.81 3.85
180 181 2.305252 TCGAAGACGACACTACAACG 57.695 50.000 0.00 0.00 43.81 4.10
198 199 1.668151 GGTGAGGTGCCGAACTGTC 60.668 63.158 0.00 0.00 0.00 3.51
199 200 2.426023 GGTGAGGTGCCGAACTGT 59.574 61.111 0.00 0.00 0.00 3.55
206 207 2.788191 CTTCAGGACGGTGAGGTGCC 62.788 65.000 0.00 0.00 0.00 5.01
207 208 1.374758 CTTCAGGACGGTGAGGTGC 60.375 63.158 0.00 0.00 0.00 5.01
208 209 1.374758 GCTTCAGGACGGTGAGGTG 60.375 63.158 0.00 0.00 0.00 4.00
209 210 2.584391 GGCTTCAGGACGGTGAGGT 61.584 63.158 0.00 0.00 0.00 3.85
210 211 2.266055 GGCTTCAGGACGGTGAGG 59.734 66.667 0.00 0.00 0.00 3.86
211 212 2.266055 GGGCTTCAGGACGGTGAG 59.734 66.667 0.00 0.00 0.00 3.51
212 213 3.319198 GGGGCTTCAGGACGGTGA 61.319 66.667 0.00 0.00 0.00 4.02
213 214 4.760047 CGGGGCTTCAGGACGGTG 62.760 72.222 0.00 0.00 0.00 4.94
233 234 2.273179 TAGGGTGAGCAGCGTCGTT 61.273 57.895 0.00 0.00 0.00 3.85
255 256 2.093447 GGATTTCCTCGAGAAGCTCCAA 60.093 50.000 15.71 0.00 37.75 3.53
256 257 1.482593 GGATTTCCTCGAGAAGCTCCA 59.517 52.381 15.71 0.00 37.75 3.86
342 358 1.281899 CGAAAGCGATGGAGGAAGAC 58.718 55.000 0.00 0.00 40.82 3.01
343 359 0.895530 ACGAAAGCGATGGAGGAAGA 59.104 50.000 0.00 0.00 41.64 2.87
352 368 3.127533 GGCTGGCACGAAAGCGAT 61.128 61.111 0.00 0.00 40.46 4.58
353 369 4.617520 TGGCTGGCACGAAAGCGA 62.618 61.111 0.00 0.00 40.46 4.93
359 375 3.241530 AGAAGGTGGCTGGCACGA 61.242 61.111 25.26 0.00 0.00 4.35
403 419 3.435186 GCTGGTTCCGGCTGCTTC 61.435 66.667 14.64 0.00 35.60 3.86
421 446 2.677524 GGGCCAGTTGCAGCATCA 60.678 61.111 4.39 0.00 43.89 3.07
423 448 2.678934 CTGGGCCAGTTGCAGCAT 60.679 61.111 25.74 0.00 43.89 3.79
476 501 4.179579 GCAGCGTGAAATCCGGCC 62.180 66.667 0.00 0.00 0.00 6.13
482 507 0.320771 AGAAGTCGGCAGCGTGAAAT 60.321 50.000 0.00 0.00 0.00 2.17
534 571 1.743623 CCCGCAAATCACGCCTACA 60.744 57.895 0.00 0.00 0.00 2.74
591 629 0.857935 CGATTCGAGGCAGCTGAATC 59.142 55.000 20.43 15.62 42.77 2.52
603 641 1.457643 AGATCCCTGGCCGATTCGA 60.458 57.895 7.83 0.00 0.00 3.71
619 657 2.725312 GGGATCGCAGACAGCCAGA 61.725 63.158 4.64 0.00 42.51 3.86
631 669 2.812499 CACCGGTACAGGGGATCG 59.188 66.667 16.82 0.00 36.61 3.69
647 685 1.866015 ACAGGTAGCAGGATGTAGCA 58.134 50.000 0.00 0.00 39.31 3.49
667 705 2.132352 GGCTAGGTCGTCGGGGATT 61.132 63.158 0.00 0.00 0.00 3.01
708 746 2.315038 GAAGGGCTCGAAATGCAGCG 62.315 60.000 0.00 0.00 36.41 5.18
744 782 1.383109 ATGTCGCCCTCATCCTGGA 60.383 57.895 0.00 0.00 0.00 3.86
746 784 0.531532 GACATGTCGCCCTCATCCTG 60.532 60.000 10.69 0.00 0.00 3.86
756 794 5.725110 AATAACTCTGAATGACATGTCGC 57.275 39.130 20.54 12.80 0.00 5.19
759 797 7.310664 CAAGCAAATAACTCTGAATGACATGT 58.689 34.615 0.00 0.00 0.00 3.21
805 843 4.405036 CCTGAAGAGAAGATGATGAGGACA 59.595 45.833 0.00 0.00 0.00 4.02
829 867 0.539051 GCCACTGTCTAGCACCTGAT 59.461 55.000 0.00 0.00 0.00 2.90
839 883 3.912496 TGTAATAGCATGCCACTGTCT 57.088 42.857 15.66 0.00 0.00 3.41
876 920 4.540153 CCGATCCGGTGAGCAAAT 57.460 55.556 0.00 0.00 42.73 2.32
894 938 0.890996 GTTGTCTGGAGCTGGGTTGG 60.891 60.000 0.00 0.00 0.00 3.77
901 945 0.965866 TCGGATCGTTGTCTGGAGCT 60.966 55.000 0.00 0.00 0.00 4.09
914 958 1.868519 GCCACCATTACGACTCGGATC 60.869 57.143 2.98 0.00 0.00 3.36
939 984 0.439985 CGTATGCATAGTGGCGCATC 59.560 55.000 10.83 0.41 45.57 3.91
955 1000 5.864418 AATGCCTAACAGAAGTATCCGTA 57.136 39.130 0.00 0.00 0.00 4.02
971 1016 0.178990 GCTCCCCGGATAAAATGCCT 60.179 55.000 0.73 0.00 0.00 4.75
1005 1074 3.604129 ATCCATGCCGCGTGTGTCA 62.604 57.895 11.61 0.00 0.00 3.58
1015 1084 1.674962 GACAGCAGAGAAATCCATGCC 59.325 52.381 4.39 0.00 39.51 4.40
1114 1189 7.621428 AACTGACTTCATTTGTCATATCCTG 57.379 36.000 0.00 0.00 42.57 3.86
1127 1202 8.565896 TTGCAACAGATTATAACTGACTTCAT 57.434 30.769 16.84 0.00 38.55 2.57
1132 1207 9.793252 ATCATTTTGCAACAGATTATAACTGAC 57.207 29.630 16.84 9.43 38.55 3.51
1137 1212 9.187996 TCTCCATCATTTTGCAACAGATTATAA 57.812 29.630 0.00 0.00 0.00 0.98
1141 1216 5.988310 TCTCCATCATTTTGCAACAGATT 57.012 34.783 0.00 0.00 0.00 2.40
1144 1219 4.081862 ACCATCTCCATCATTTTGCAACAG 60.082 41.667 0.00 0.00 0.00 3.16
1163 1238 1.000385 CGTTCCACAACATTGCACCAT 60.000 47.619 0.00 0.00 32.14 3.55
1249 1325 3.002791 CGAGGGTACGTAGACAACACTA 58.997 50.000 0.00 0.00 0.00 2.74
1367 1444 1.326245 CGAGCTGAACGTGTGTTGAAA 59.674 47.619 0.00 0.00 38.78 2.69
1372 1449 0.313987 TCATCGAGCTGAACGTGTGT 59.686 50.000 0.00 0.00 0.00 3.72
1383 1460 1.989966 TTCGAGGGACGTCATCGAGC 61.990 60.000 30.77 10.93 45.23 5.03
1461 1538 2.034179 CCTGCGTCGGTAGAACATCATA 59.966 50.000 0.00 0.00 0.00 2.15
1627 1707 1.834822 GCCATAGAGAGGGTCGGCT 60.835 63.158 0.00 0.00 36.58 5.52
1730 1810 1.372501 CTTCCCTTTCCTTCCCTCCA 58.627 55.000 0.00 0.00 0.00 3.86
1861 1946 4.583073 GGAATTCGTATTGGGCCTTAATGT 59.417 41.667 4.53 0.00 0.00 2.71
1933 2018 4.581409 TGGACGACTATATTCGGACATTGA 59.419 41.667 15.80 0.00 43.58 2.57
2205 2291 3.897141 TGTTATGCGGTCTGACCAATA 57.103 42.857 25.42 18.42 38.47 1.90
2208 2294 1.070914 TGTTGTTATGCGGTCTGACCA 59.929 47.619 25.42 8.46 38.47 4.02
2238 2324 5.416271 AGTAACATACCGATGACAAAGGT 57.584 39.130 9.69 9.69 41.73 3.50
2269 2355 5.401674 GGTATTGAGATACCGACGATCAAAC 59.598 44.000 0.00 1.57 46.13 2.93
2272 2358 4.761235 GGTATTGAGATACCGACGATCA 57.239 45.455 0.00 0.00 46.13 2.92
2370 2456 1.541147 TCACATAAGCCTTGCAAGCAC 59.459 47.619 21.43 14.62 0.00 4.40
2501 2588 9.521841 TCACAACATAACTGGGTGATTATAAAA 57.478 29.630 0.00 0.00 36.49 1.52
2712 2799 7.458397 TGTTTCCTAACCATAGACATGAGTTT 58.542 34.615 0.00 0.00 33.15 2.66
2922 3010 0.250038 TCTGACAGCCACTGACTTGC 60.250 55.000 0.78 0.00 35.18 4.01
2923 3011 1.607509 CCTCTGACAGCCACTGACTTG 60.608 57.143 0.78 0.00 35.18 3.16
2924 3012 0.683973 CCTCTGACAGCCACTGACTT 59.316 55.000 0.78 0.00 35.18 3.01
2925 3013 1.825281 GCCTCTGACAGCCACTGACT 61.825 60.000 0.78 0.00 35.18 3.41
2926 3014 1.375268 GCCTCTGACAGCCACTGAC 60.375 63.158 0.78 0.00 35.18 3.51
2927 3015 1.410050 TTGCCTCTGACAGCCACTGA 61.410 55.000 0.78 0.00 35.18 3.41
2947 3035 6.748198 GCGATTATTTTCGGGTAAATTGAACA 59.252 34.615 0.00 0.00 39.49 3.18
2988 3079 2.559252 GGAGTAAGTATCCCCCGGCTAT 60.559 54.545 0.00 0.00 0.00 2.97
2993 3084 3.234234 TGTAGGAGTAAGTATCCCCCG 57.766 52.381 0.00 0.00 37.57 5.73
3025 3116 0.755686 AGAGGATGAATGCCGGTCTC 59.244 55.000 1.90 0.00 0.00 3.36
3030 3121 0.383231 GCCAAAGAGGATGAATGCCG 59.617 55.000 0.00 0.00 41.22 5.69
3033 3127 2.042686 TCGGCCAAAGAGGATGAATG 57.957 50.000 2.24 0.00 41.22 2.67
3040 3134 1.541588 CTTCCTTTTCGGCCAAAGAGG 59.458 52.381 15.42 11.55 36.03 3.69
3042 3139 2.227194 GTCTTCCTTTTCGGCCAAAGA 58.773 47.619 15.42 4.05 36.03 2.52
3050 3147 0.788391 CGTTCGGGTCTTCCTTTTCG 59.212 55.000 0.00 0.00 0.00 3.46
3054 3151 2.336945 AAAACGTTCGGGTCTTCCTT 57.663 45.000 0.00 0.00 0.00 3.36
3055 3152 2.336945 AAAAACGTTCGGGTCTTCCT 57.663 45.000 0.00 0.00 0.00 3.36
3101 3198 1.909700 TTGATGCAAGGAACCACTCC 58.090 50.000 0.00 0.00 45.81 3.85
3124 3221 4.036734 ACAAATCAGCATCGAAGTTGTTGT 59.963 37.500 4.43 6.12 0.00 3.32
3132 3229 2.668001 CGGCAAACAAATCAGCATCGAA 60.668 45.455 0.00 0.00 0.00 3.71
3134 3231 1.261989 CGGCAAACAAATCAGCATCG 58.738 50.000 0.00 0.00 0.00 3.84
3136 3233 0.968405 ACCGGCAAACAAATCAGCAT 59.032 45.000 0.00 0.00 0.00 3.79
3141 3238 1.790755 GGGAAACCGGCAAACAAATC 58.209 50.000 0.00 0.00 43.64 2.17
3176 3273 3.378427 GGATACCATGTCAAAGAGTTGGC 59.622 47.826 0.00 0.00 39.95 4.52
3186 3283 3.106827 TGAGAGCAAGGATACCATGTCA 58.893 45.455 0.00 0.00 37.17 3.58
3208 3305 8.964476 AGTGCAAAGTACAAGTATGCTAATAT 57.036 30.769 0.00 0.00 37.86 1.28
3213 3310 4.899502 AGAGTGCAAAGTACAAGTATGCT 58.100 39.130 0.00 0.00 37.86 3.79
3258 3356 9.509956 AAAGCACACTATTAATACCTGTGTAAA 57.490 29.630 20.13 0.00 39.46 2.01
3262 3360 7.119116 TGACAAAGCACACTATTAATACCTGTG 59.881 37.037 17.26 17.26 36.19 3.66
3263 3361 7.165485 TGACAAAGCACACTATTAATACCTGT 58.835 34.615 0.00 0.00 0.00 4.00
3297 3396 9.200817 ACTGCATGGATAACTATTTGGTAAAAT 57.799 29.630 0.00 0.00 39.38 1.82
3303 3402 7.099266 TCAAACTGCATGGATAACTATTTGG 57.901 36.000 0.00 0.00 0.00 3.28
3307 3406 7.123247 AGCTTTTCAAACTGCATGGATAACTAT 59.877 33.333 0.00 0.00 0.00 2.12
3308 3407 6.434028 AGCTTTTCAAACTGCATGGATAACTA 59.566 34.615 0.00 0.00 0.00 2.24
3309 3408 5.244626 AGCTTTTCAAACTGCATGGATAACT 59.755 36.000 0.00 0.00 0.00 2.24
3322 3421 7.441458 TCTCCTAAGTTCTACAGCTTTTCAAAC 59.559 37.037 0.00 0.00 0.00 2.93
3323 3422 7.506114 TCTCCTAAGTTCTACAGCTTTTCAAA 58.494 34.615 0.00 0.00 0.00 2.69
3352 3451 8.982723 AGTCTCCAAATAGTGTCAAGTATATGT 58.017 33.333 0.00 0.00 0.00 2.29
3356 3455 8.353684 CGATAGTCTCCAAATAGTGTCAAGTAT 58.646 37.037 0.00 0.00 0.00 2.12
3357 3456 7.704271 CGATAGTCTCCAAATAGTGTCAAGTA 58.296 38.462 0.00 0.00 0.00 2.24
3358 3457 6.565234 CGATAGTCTCCAAATAGTGTCAAGT 58.435 40.000 0.00 0.00 0.00 3.16
3377 3476 7.240674 TGCTGCTTTGTTTATTTGTACGATAG 58.759 34.615 0.00 0.00 46.19 2.08
3378 3477 7.135089 TGCTGCTTTGTTTATTTGTACGATA 57.865 32.000 0.00 0.00 0.00 2.92
3379 3478 6.007936 TGCTGCTTTGTTTATTTGTACGAT 57.992 33.333 0.00 0.00 0.00 3.73
3380 3479 5.425577 TGCTGCTTTGTTTATTTGTACGA 57.574 34.783 0.00 0.00 0.00 3.43
3381 3480 5.855925 TGATGCTGCTTTGTTTATTTGTACG 59.144 36.000 0.00 0.00 0.00 3.67
3382 3481 7.816945 ATGATGCTGCTTTGTTTATTTGTAC 57.183 32.000 0.00 0.00 0.00 2.90
3384 3483 9.439500 AAATATGATGCTGCTTTGTTTATTTGT 57.561 25.926 0.00 0.00 0.00 2.83
3387 3486 9.880157 AGAAAATATGATGCTGCTTTGTTTATT 57.120 25.926 0.00 0.00 0.00 1.40
3388 3487 9.880157 AAGAAAATATGATGCTGCTTTGTTTAT 57.120 25.926 0.00 0.00 0.00 1.40
3389 3488 9.709495 AAAGAAAATATGATGCTGCTTTGTTTA 57.291 25.926 0.00 0.00 0.00 2.01
3390 3489 8.611654 AAAGAAAATATGATGCTGCTTTGTTT 57.388 26.923 0.00 0.00 0.00 2.83
3391 3490 8.611654 AAAAGAAAATATGATGCTGCTTTGTT 57.388 26.923 0.00 0.00 0.00 2.83
3392 3491 8.611654 AAAAAGAAAATATGATGCTGCTTTGT 57.388 26.923 0.00 0.00 0.00 2.83
3393 3492 8.932791 AGAAAAAGAAAATATGATGCTGCTTTG 58.067 29.630 0.00 0.00 0.00 2.77
3395 3494 9.798994 CTAGAAAAAGAAAATATGATGCTGCTT 57.201 29.630 0.00 0.00 0.00 3.91
3396 3495 8.964772 ACTAGAAAAAGAAAATATGATGCTGCT 58.035 29.630 0.00 0.00 0.00 4.24
3397 3496 9.578439 AACTAGAAAAAGAAAATATGATGCTGC 57.422 29.630 0.00 0.00 0.00 5.25
3411 3510 8.504005 GCATTTGTGCTACTAACTAGAAAAAGA 58.496 33.333 0.00 0.00 0.00 2.52
3412 3511 7.750903 GGCATTTGTGCTACTAACTAGAAAAAG 59.249 37.037 0.00 0.00 34.73 2.27
3413 3512 7.308951 GGGCATTTGTGCTACTAACTAGAAAAA 60.309 37.037 0.00 0.00 34.73 1.94
3414 3513 6.150474 GGGCATTTGTGCTACTAACTAGAAAA 59.850 38.462 0.00 0.00 34.73 2.29
3415 3514 5.646360 GGGCATTTGTGCTACTAACTAGAAA 59.354 40.000 0.00 0.00 34.73 2.52
3416 3515 5.183228 GGGCATTTGTGCTACTAACTAGAA 58.817 41.667 0.00 0.00 34.73 2.10
3417 3516 4.679639 CGGGCATTTGTGCTACTAACTAGA 60.680 45.833 0.00 0.00 34.73 2.43
3418 3517 3.555956 CGGGCATTTGTGCTACTAACTAG 59.444 47.826 0.07 0.00 34.73 2.57
3419 3518 3.055675 ACGGGCATTTGTGCTACTAACTA 60.056 43.478 0.07 0.00 34.73 2.24
3444 3543 2.490115 TCGCTTTTATTCCCGTTGCAAT 59.510 40.909 0.59 0.00 0.00 3.56
3561 3660 5.152623 AGCAGAACAAGATAGTGTGCTTA 57.847 39.130 0.00 0.00 38.68 3.09
3585 3684 2.276201 CACGAGACCGATTAAATGGCA 58.724 47.619 0.00 0.00 39.50 4.92
3643 3742 4.039124 TGCTGCTCTAATCATCATAACCGA 59.961 41.667 0.00 0.00 0.00 4.69
3869 3970 4.931601 TCCTAGATGTTATTGCGCATCATC 59.068 41.667 24.29 24.29 42.72 2.92
3888 3989 6.542821 AGAACCATGAGAAATGTTGTTCCTA 58.457 36.000 0.00 0.00 33.00 2.94
3890 3991 5.712152 AGAACCATGAGAAATGTTGTTCC 57.288 39.130 0.00 0.00 33.00 3.62
4144 4251 7.750903 GCACTGACAACTAGGACAAAAATATTC 59.249 37.037 0.00 0.00 0.00 1.75
4158 4265 4.081862 GGTATAGTGTGGCACTGACAACTA 60.082 45.833 19.83 16.84 45.01 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.