Multiple sequence alignment - TraesCS2A01G124900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G124900 chr2A 100.000 4484 0 0 1 4484 73558019 73553536 0.000000e+00 8281.0
1 TraesCS2A01G124900 chr2A 86.216 370 45 6 4018 4383 283945311 283945678 3.250000e-106 396.0
2 TraesCS2A01G124900 chr2A 83.740 369 56 3 4017 4382 708392877 708392510 3.320000e-91 346.0
3 TraesCS2A01G124900 chr2A 82.213 253 31 8 2555 2807 383426662 383426424 5.880000e-49 206.0
4 TraesCS2A01G124900 chr2A 77.033 209 24 13 1824 2020 73556000 73556196 1.030000e-16 99.0
5 TraesCS2A01G124900 chr2A 94.000 50 3 0 1815 1864 161948682 161948633 4.810000e-10 76.8
6 TraesCS2A01G124900 chr2D 96.263 1900 60 6 2 1894 74282940 74281045 0.000000e+00 3105.0
7 TraesCS2A01G124900 chr2D 93.757 897 24 3 1907 2785 74280903 74280021 0.000000e+00 1317.0
8 TraesCS2A01G124900 chr2D 92.522 682 38 7 2949 3630 74279859 74279191 0.000000e+00 965.0
9 TraesCS2A01G124900 chr2D 75.764 458 84 24 3937 4381 585899542 585899099 5.880000e-49 206.0
10 TraesCS2A01G124900 chr2D 96.117 103 3 1 4382 4484 74159196 74159095 2.770000e-37 167.0
11 TraesCS2A01G124900 chr2D 90.598 117 7 1 1904 2020 74281003 74281115 7.770000e-33 152.0
12 TraesCS2A01G124900 chr2D 98.649 74 1 0 1904 1977 645152796 645152723 1.010000e-26 132.0
13 TraesCS2A01G124900 chr2D 94.667 75 4 0 2774 2848 74280007 74279933 2.830000e-22 117.0
14 TraesCS2A01G124900 chr2D 87.671 73 5 1 1824 1892 74280790 74280862 1.030000e-11 82.4
15 TraesCS2A01G124900 chr2D 97.826 46 1 0 1975 2020 83160147 83160192 3.720000e-11 80.5
16 TraesCS2A01G124900 chr2D 93.878 49 2 1 1816 1864 525715426 525715473 6.220000e-09 73.1
17 TraesCS2A01G124900 chr2B 96.571 904 23 7 944 1843 113327976 113327077 0.000000e+00 1491.0
18 TraesCS2A01G124900 chr2B 96.812 690 20 1 2096 2785 113327083 113326396 0.000000e+00 1151.0
19 TraesCS2A01G124900 chr2B 93.003 686 35 7 2949 3634 113326237 113325565 0.000000e+00 989.0
20 TraesCS2A01G124900 chr2B 86.514 393 47 6 3995 4383 337077647 337077257 1.150000e-115 427.0
21 TraesCS2A01G124900 chr2B 90.795 239 19 3 395 632 113328220 113327984 2.600000e-82 316.0
22 TraesCS2A01G124900 chr2B 95.146 103 4 1 4382 4484 113287995 113287894 1.290000e-35 161.0
23 TraesCS2A01G124900 chr2B 79.452 219 34 6 689 901 728957962 728957749 1.300000e-30 145.0
24 TraesCS2A01G124900 chr2B 94.667 75 4 0 2774 2848 113326382 113326308 2.830000e-22 117.0
25 TraesCS2A01G124900 chr2B 95.918 49 2 0 1975 2023 639210995 639210947 3.720000e-11 80.5
26 TraesCS2A01G124900 chr2B 97.778 45 1 0 1820 1864 264112804 264112848 1.340000e-10 78.7
27 TraesCS2A01G124900 chr2B 95.745 47 1 1 1818 1864 461570163 461570118 1.730000e-09 75.0
28 TraesCS2A01G124900 chr3B 91.853 896 52 12 942 1824 114145954 114145067 0.000000e+00 1230.0
29 TraesCS2A01G124900 chr3B 87.430 891 61 15 2948 3820 114144185 114143328 0.000000e+00 977.0
30 TraesCS2A01G124900 chr3B 94.577 461 25 0 2325 2785 114144812 114144352 0.000000e+00 713.0
31 TraesCS2A01G124900 chr3B 97.826 46 0 1 1819 1864 421096719 421096763 1.340000e-10 78.7
32 TraesCS2A01G124900 chr3B 86.301 73 7 3 221 290 114146419 114146347 4.810000e-10 76.8
33 TraesCS2A01G124900 chr3B 100.000 31 0 0 1864 1894 815509220 815509190 1.740000e-04 58.4
34 TraesCS2A01G124900 chr3D 91.343 901 51 16 942 1824 67710406 67711297 0.000000e+00 1206.0
35 TraesCS2A01G124900 chr3D 83.860 886 72 23 2953 3821 67712314 67713145 0.000000e+00 778.0
36 TraesCS2A01G124900 chr3D 93.843 471 29 0 2315 2785 67711664 67712134 0.000000e+00 710.0
37 TraesCS2A01G124900 chr3D 88.235 102 10 2 4384 4484 67716656 67716756 2.190000e-23 121.0
38 TraesCS2A01G124900 chr3A 84.276 884 68 25 2958 3821 79402185 79403017 0.000000e+00 797.0
39 TraesCS2A01G124900 chr3A 93.763 481 25 5 942 1418 79400439 79400918 0.000000e+00 717.0
40 TraesCS2A01G124900 chr3A 92.662 477 33 2 2319 2795 79401536 79402010 0.000000e+00 686.0
41 TraesCS2A01G124900 chr3A 89.529 382 27 6 1443 1824 79400901 79401269 5.250000e-129 472.0
42 TraesCS2A01G124900 chr3A 82.385 369 62 2 4017 4382 42446216 42446584 7.240000e-83 318.0
43 TraesCS2A01G124900 chr3A 85.714 126 8 4 1861 1976 559604578 559604703 1.690000e-24 124.0
44 TraesCS2A01G124900 chr3A 77.586 232 25 14 2041 2259 79401305 79401522 1.020000e-21 115.0
45 TraesCS2A01G124900 chr7D 81.982 444 76 3 3940 4379 636341285 636341728 1.520000e-99 374.0
46 TraesCS2A01G124900 chr7D 81.099 455 76 7 3937 4383 595615304 595614852 5.520000e-94 355.0
47 TraesCS2A01G124900 chr7D 77.778 171 23 11 749 905 534625521 534625352 1.720000e-14 91.6
48 TraesCS2A01G124900 chr5D 83.657 361 44 8 4026 4384 428685610 428685263 4.330000e-85 326.0
49 TraesCS2A01G124900 chr5D 92.391 92 4 3 1904 1995 449674938 449675026 1.310000e-25 128.0
50 TraesCS2A01G124900 chr5D 95.062 81 2 2 1904 1984 421678295 421678217 4.710000e-25 126.0
51 TraesCS2A01G124900 chr5D 94.000 50 2 1 1976 2024 125781528 125781577 1.730000e-09 75.0
52 TraesCS2A01G124900 chr5D 97.561 41 0 1 1854 1894 378472753 378472792 8.050000e-08 69.4
53 TraesCS2A01G124900 chr5A 82.044 362 62 2 4024 4382 572835019 572835380 5.640000e-79 305.0
54 TraesCS2A01G124900 chr5A 94.000 50 3 0 1975 2024 11283790 11283741 4.810000e-10 76.8
55 TraesCS2A01G124900 chr6B 82.609 345 55 5 4041 4382 703206407 703206065 2.620000e-77 300.0
56 TraesCS2A01G124900 chr6B 88.679 53 6 0 688 740 580243366 580243314 1.040000e-06 65.8
57 TraesCS2A01G124900 chr1A 83.060 183 23 6 762 937 471785396 471785215 4.640000e-35 159.0
58 TraesCS2A01G124900 chr1A 97.778 45 1 0 1820 1864 507081844 507081800 1.340000e-10 78.7
59 TraesCS2A01G124900 chr5B 93.333 90 4 2 1904 1993 115054054 115053967 1.010000e-26 132.0
60 TraesCS2A01G124900 chr4A 97.403 77 2 0 1904 1980 647205493 647205569 1.010000e-26 132.0
61 TraesCS2A01G124900 chr4A 78.804 184 24 8 739 908 635745140 635744958 4.740000e-20 110.0
62 TraesCS2A01G124900 chr4A 88.679 53 6 0 688 740 585049202 585049254 1.040000e-06 65.8
63 TraesCS2A01G124900 chr4B 95.000 80 4 0 1904 1983 252950483 252950404 4.710000e-25 126.0
64 TraesCS2A01G124900 chr4B 78.161 174 23 8 749 908 589106903 589107075 3.690000e-16 97.1
65 TraesCS2A01G124900 chrUn 100.000 52 0 0 2260 2311 45102552 45102501 3.690000e-16 97.1
66 TraesCS2A01G124900 chrUn 100.000 52 0 0 2260 2311 86503864 86503915 3.690000e-16 97.1
67 TraesCS2A01G124900 chrUn 100.000 52 0 0 2260 2311 171018759 171018708 3.690000e-16 97.1
68 TraesCS2A01G124900 chrUn 100.000 52 0 0 2260 2311 186165539 186165488 3.690000e-16 97.1
69 TraesCS2A01G124900 chrUn 100.000 52 0 0 2260 2311 341859544 341859493 3.690000e-16 97.1
70 TraesCS2A01G124900 chrUn 100.000 52 0 0 2260 2311 425818309 425818258 3.690000e-16 97.1
71 TraesCS2A01G124900 chrUn 100.000 31 0 0 1864 1894 250291952 250291922 1.740000e-04 58.4
72 TraesCS2A01G124900 chrUn 100.000 31 0 0 1864 1894 357137673 357137643 1.740000e-04 58.4
73 TraesCS2A01G124900 chrUn 89.362 47 3 1 1848 1894 452995852 452995896 1.740000e-04 58.4
74 TraesCS2A01G124900 chr6D 100.000 52 0 0 2260 2311 43988042 43988093 3.690000e-16 97.1
75 TraesCS2A01G124900 chr6D 95.745 47 2 0 1818 1864 310400793 310400747 4.810000e-10 76.8
76 TraesCS2A01G124900 chr6D 91.489 47 4 0 862 908 461542363 461542317 1.040000e-06 65.8
77 TraesCS2A01G124900 chr1B 77.852 149 29 4 759 905 679124834 679124980 6.180000e-14 89.8
78 TraesCS2A01G124900 chr1B 95.000 40 2 0 701 740 587022868 587022829 3.740000e-06 63.9
79 TraesCS2A01G124900 chr7A 97.826 46 1 0 1975 2020 181833248 181833293 3.720000e-11 80.5
80 TraesCS2A01G124900 chr4D 95.833 48 1 1 1977 2023 484740161 484740208 4.810000e-10 76.8
81 TraesCS2A01G124900 chr4D 89.130 46 5 0 688 733 15548585 15548540 1.740000e-04 58.4
82 TraesCS2A01G124900 chr6A 91.489 47 4 0 862 908 608339384 608339338 1.040000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G124900 chr2A 73553536 73558019 4483 True 8281.00 8281 100.00000 1 4484 1 chr2A.!!$R1 4483
1 TraesCS2A01G124900 chr2D 74279191 74282940 3749 True 1376.00 3105 94.30225 2 3630 4 chr2D.!!$R4 3628
2 TraesCS2A01G124900 chr2B 113325565 113328220 2655 True 812.80 1491 94.36960 395 3634 5 chr2B.!!$R6 3239
3 TraesCS2A01G124900 chr3B 114143328 114146419 3091 True 749.20 1230 90.04025 221 3820 4 chr3B.!!$R2 3599
4 TraesCS2A01G124900 chr3D 67710406 67716756 6350 False 703.75 1206 89.32025 942 4484 4 chr3D.!!$F1 3542
5 TraesCS2A01G124900 chr3A 79400439 79403017 2578 False 557.40 797 87.56320 942 3821 5 chr3A.!!$F3 2879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
386 393 0.467290 GACGAGGAGGAGGAGCTCAT 60.467 60.000 17.19 8.81 31.08 2.90 F
481 501 0.687354 TCTTCTCCCGCTTTGCTTCT 59.313 50.000 0.00 0.00 0.00 2.85 F
1077 1147 1.741401 CATCCAGCGCAAACTCGGA 60.741 57.895 11.47 5.63 0.00 4.55 F
2852 3255 0.597637 AGTAGACTGTGTGCGTGTGC 60.598 55.000 0.00 0.00 43.20 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1687 0.745845 CCTGTGATGGGCTGTACTGC 60.746 60.000 15.79 15.79 0.00 4.40 R
1867 1953 1.670295 GCAAAAGCCCAAACAAACAGG 59.330 47.619 0.00 0.00 0.00 4.00 R
2876 3279 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49 R
4171 6589 0.041839 GCATTCCGCGTTAGAGCATG 60.042 55.000 4.92 0.00 36.85 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.689892 CCCCCTCCTCTTGTACTCCTC 60.690 61.905 0.00 0.00 0.00 3.71
32 34 4.471747 TCTTGTACTCCTCTGCTCTCTCTA 59.528 45.833 0.00 0.00 0.00 2.43
83 85 2.726691 CGTAAGCCCGCTGTTGACG 61.727 63.158 0.00 0.00 0.00 4.35
85 87 3.523087 TAAGCCCGCTGTTGACGCA 62.523 57.895 0.00 0.00 0.00 5.24
174 176 5.738619 TTCTGTGCTAACCATCTTCTGTA 57.261 39.130 0.00 0.00 0.00 2.74
295 297 0.565674 AACCTCCAACCCCCACATTT 59.434 50.000 0.00 0.00 0.00 2.32
339 341 0.522286 CGCAAACACAACAACGAGCA 60.522 50.000 0.00 0.00 0.00 4.26
345 347 3.773860 ACACAACAACGAGCAAAATCA 57.226 38.095 0.00 0.00 0.00 2.57
346 348 4.103365 ACACAACAACGAGCAAAATCAA 57.897 36.364 0.00 0.00 0.00 2.57
386 393 0.467290 GACGAGGAGGAGGAGCTCAT 60.467 60.000 17.19 8.81 31.08 2.90
392 399 1.381056 AGGAGGAGCTCATCGTGCT 60.381 57.895 21.49 10.87 44.24 4.40
481 501 0.687354 TCTTCTCCCGCTTTGCTTCT 59.313 50.000 0.00 0.00 0.00 2.85
632 691 2.930562 GGGGTCCACCTGTCAGCT 60.931 66.667 0.00 0.00 40.03 4.24
759 818 3.151554 CCAACCGTTAGGCCTAGTTTTT 58.848 45.455 13.36 2.90 42.76 1.94
802 861 2.163211 GTCAAAAAGCTCATCAGGCCTC 59.837 50.000 0.00 0.00 0.00 4.70
912 976 4.367023 CAAGGTCGGGCCGTTCGA 62.367 66.667 27.32 2.65 43.70 3.71
924 988 4.373116 GTTCGAGACGGCCTGCCA 62.373 66.667 9.17 0.00 35.37 4.92
1077 1147 1.741401 CATCCAGCGCAAACTCGGA 60.741 57.895 11.47 5.63 0.00 4.55
1230 1300 1.874019 CGACGATGACCGCTTCCTG 60.874 63.158 0.00 0.00 43.32 3.86
1336 1409 3.120199 CCACTAGTGCTTTTCGTGATTGG 60.120 47.826 17.86 0.00 0.00 3.16
1511 1596 2.423947 GGAGCCAGAAATCCATGTCCAT 60.424 50.000 0.00 0.00 35.54 3.41
1719 1804 5.924475 AGGCGAAATTCATCCTATTTACG 57.076 39.130 2.52 0.00 0.00 3.18
1833 1919 3.119919 CGAACTATACATACTCCCTCCGC 60.120 52.174 0.00 0.00 0.00 5.54
1849 1935 5.130477 TCCCTCCGCAAAGAAATATAAGAGT 59.870 40.000 0.00 0.00 0.00 3.24
1867 1953 5.346181 AGAGTGTTTAGATCACTAAGGCC 57.654 43.478 0.00 0.00 44.68 5.19
1894 1980 3.027412 TGTTTGGGCTTTTGCTTCTACA 58.973 40.909 0.00 0.00 46.54 2.74
1895 1981 3.068024 TGTTTGGGCTTTTGCTTCTACAG 59.932 43.478 0.00 0.00 46.54 2.74
1898 1984 3.295973 TGGGCTTTTGCTTCTACAGTTT 58.704 40.909 0.00 0.00 46.54 2.66
1899 1985 3.068024 TGGGCTTTTGCTTCTACAGTTTG 59.932 43.478 0.00 0.00 46.54 2.93
1900 1986 3.068165 GGGCTTTTGCTTCTACAGTTTGT 59.932 43.478 0.00 0.00 46.54 2.83
1901 1987 4.441495 GGGCTTTTGCTTCTACAGTTTGTT 60.441 41.667 0.00 0.00 46.54 2.83
1902 1988 5.109210 GGCTTTTGCTTCTACAGTTTGTTT 58.891 37.500 0.00 0.00 46.54 2.83
1903 1989 5.005682 GGCTTTTGCTTCTACAGTTTGTTTG 59.994 40.000 0.00 0.00 46.54 2.93
1904 1990 5.804979 GCTTTTGCTTCTACAGTTTGTTTGA 59.195 36.000 0.00 0.00 43.35 2.69
1905 1991 6.020360 GCTTTTGCTTCTACAGTTTGTTTGAG 60.020 38.462 0.00 0.00 43.35 3.02
1923 2138 3.663025 TGAGCTTTTATGGCTTTTTGGC 58.337 40.909 0.00 0.00 40.40 4.52
1996 2211 6.768381 GGCCTAAAGTAGTGATCTAAATGCTT 59.232 38.462 0.00 0.00 0.00 3.91
2194 2431 9.681062 AAATAAACAAGATAACCTAGCTTAGCA 57.319 29.630 7.07 0.00 31.74 3.49
2321 2698 1.648467 GCAGCCTACGAAAAGCCCTG 61.648 60.000 0.00 0.00 0.00 4.45
2362 2739 9.567776 TTTATACTCATTTTGACTGGAAACTGA 57.432 29.630 0.00 0.00 0.00 3.41
2374 2751 6.183361 TGACTGGAAACTGAAGGATTTTAGGA 60.183 38.462 0.00 0.00 0.00 2.94
2470 2847 8.894768 AGGTGCTTATAATACAGAAATGACTC 57.105 34.615 0.00 0.00 0.00 3.36
2490 2867 7.640313 TGACTCTAGGAAGAAATACTACCTCA 58.360 38.462 0.00 0.00 32.90 3.86
2645 3022 5.784023 TGTATTCCCAACTACCCAGATAGA 58.216 41.667 0.00 0.00 0.00 1.98
2768 3145 3.880490 TGTACCACACAATCAGTTTCCAC 59.120 43.478 0.00 0.00 32.95 4.02
2836 3239 8.779303 CAAAAATATTGTCAGTACACACCAGTA 58.221 33.333 0.00 0.00 34.61 2.74
2837 3240 8.547967 AAAATATTGTCAGTACACACCAGTAG 57.452 34.615 0.00 0.00 34.61 2.57
2840 3243 3.828921 TGTCAGTACACACCAGTAGACT 58.171 45.455 0.00 0.00 0.00 3.24
2852 3255 0.597637 AGTAGACTGTGTGCGTGTGC 60.598 55.000 0.00 0.00 43.20 4.57
2886 3289 3.860125 GCGTGTGCGTGTGTGTGT 61.860 61.111 0.00 0.00 40.81 3.72
2887 3290 2.021243 CGTGTGCGTGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
2888 3291 2.735677 CGTGTGCGTGTGTGTGTGT 61.736 57.895 0.00 0.00 0.00 3.72
2889 3292 1.225991 GTGTGCGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2890 3293 1.669437 TGTGCGTGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
2891 3294 1.225991 GTGCGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2892 3295 1.669437 TGCGTGTGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
2893 3296 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2894 3297 1.906994 GCGTGTGTGTGTGTGTGTGT 61.907 55.000 0.00 0.00 0.00 3.72
2895 3298 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
2896 3299 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2897 3300 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2898 3301 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
2899 3302 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
2900 3303 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
2901 3304 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
2924 3327 4.423732 CGCTTAAAGTTGCAATTAGCCAT 58.576 39.130 0.59 0.00 44.83 4.40
2930 3333 1.919918 GTTGCAATTAGCCATTCGCAC 59.080 47.619 0.59 0.00 44.83 5.34
2941 3344 2.891391 CCATTCGCACGATACAATTCG 58.109 47.619 0.00 0.00 44.56 3.34
3021 3455 6.866770 TCGTACTAAGAGGAAAACATGTTCAG 59.133 38.462 12.39 2.42 0.00 3.02
3022 3456 6.090898 CGTACTAAGAGGAAAACATGTTCAGG 59.909 42.308 12.39 0.00 0.00 3.86
3023 3457 5.316987 ACTAAGAGGAAAACATGTTCAGGG 58.683 41.667 12.39 0.00 0.00 4.45
3044 3478 2.666085 ACAGGCATGTCTACGGTGA 58.334 52.632 0.00 0.00 32.99 4.02
3058 3492 3.402628 ACGGTGAATATATGGTCCTGC 57.597 47.619 0.00 0.00 0.00 4.85
3212 3649 7.433708 TGTCATGTGAATAAGAAACGACAAT 57.566 32.000 0.00 0.00 0.00 2.71
3219 3656 8.020819 TGTGAATAAGAAACGACAATGGATTTC 58.979 33.333 0.00 0.00 0.00 2.17
3222 3659 8.970691 AATAAGAAACGACAATGGATTTCTTG 57.029 30.769 21.20 0.98 46.00 3.02
3223 3660 4.798574 AGAAACGACAATGGATTTCTTGC 58.201 39.130 0.00 0.00 38.01 4.01
3253 3692 0.170339 TACACCGACTGATGTGAGCG 59.830 55.000 0.00 0.00 36.35 5.03
3305 3744 4.308899 TCCGCTCTTTATGCTAGACTTC 57.691 45.455 0.00 0.00 0.00 3.01
3458 3897 0.884704 GTCTCCCAGCTTGAAACGCA 60.885 55.000 0.00 0.00 0.00 5.24
3522 3961 6.167685 TGCTAGTTTTATTTTAGCTCGGTGA 58.832 36.000 0.00 0.00 40.28 4.02
3523 3962 6.821665 TGCTAGTTTTATTTTAGCTCGGTGAT 59.178 34.615 0.00 0.00 40.28 3.06
3566 4005 5.302360 ACAACATTTGTCTCGGCTTTACTA 58.698 37.500 0.00 0.00 40.56 1.82
3591 4030 4.578516 TCTTATTTGGTTGTCTGTGTGTGG 59.421 41.667 0.00 0.00 0.00 4.17
3611 4050 5.596361 TGTGGAAAATCTGGAAGCTGTTTTA 59.404 36.000 0.00 0.00 0.00 1.52
3613 4052 7.154656 GTGGAAAATCTGGAAGCTGTTTTAAT 58.845 34.615 0.00 0.00 0.00 1.40
3622 4061 6.539173 TGGAAGCTGTTTTAATGAGGTTCTA 58.461 36.000 15.07 9.89 41.71 2.10
3638 4077 9.751542 ATGAGGTTCTATATAAACTTTGTCTCG 57.248 33.333 0.00 0.00 0.00 4.04
3647 4086 4.547406 AAACTTTGTCTCGGTAACTTGC 57.453 40.909 0.00 0.00 0.00 4.01
3648 4087 3.470645 ACTTTGTCTCGGTAACTTGCT 57.529 42.857 0.00 0.00 0.00 3.91
3649 4088 3.131396 ACTTTGTCTCGGTAACTTGCTG 58.869 45.455 0.00 0.00 0.00 4.41
3650 4089 1.508632 TTGTCTCGGTAACTTGCTGC 58.491 50.000 0.00 0.00 0.00 5.25
3651 4090 0.666274 TGTCTCGGTAACTTGCTGCG 60.666 55.000 0.00 0.00 0.00 5.18
3652 4091 0.388134 GTCTCGGTAACTTGCTGCGA 60.388 55.000 0.00 0.00 0.00 5.10
3653 4092 0.530744 TCTCGGTAACTTGCTGCGAT 59.469 50.000 0.00 0.00 0.00 4.58
3654 4093 1.067142 TCTCGGTAACTTGCTGCGATT 60.067 47.619 0.00 0.00 0.00 3.34
3655 4094 1.324736 CTCGGTAACTTGCTGCGATTC 59.675 52.381 0.00 0.00 0.00 2.52
3656 4095 1.075542 CGGTAACTTGCTGCGATTCA 58.924 50.000 0.00 0.00 0.00 2.57
3657 4096 1.201921 CGGTAACTTGCTGCGATTCAC 60.202 52.381 0.00 0.00 0.00 3.18
3658 4097 1.201921 GGTAACTTGCTGCGATTCACG 60.202 52.381 0.00 0.00 45.66 4.35
3659 4098 1.459592 GTAACTTGCTGCGATTCACGT 59.540 47.619 0.00 0.00 44.60 4.49
3660 4099 0.235665 AACTTGCTGCGATTCACGTG 59.764 50.000 9.94 9.94 44.60 4.49
3661 4100 1.133253 CTTGCTGCGATTCACGTGG 59.867 57.895 17.00 0.00 44.60 4.94
3662 4101 2.839324 CTTGCTGCGATTCACGTGGC 62.839 60.000 17.00 11.67 44.60 5.01
3663 4102 4.166011 GCTGCGATTCACGTGGCC 62.166 66.667 17.00 0.00 44.60 5.36
3722 4175 8.783833 AGATGATTATGGAATATGAAACGGAG 57.216 34.615 0.00 0.00 0.00 4.63
3725 4178 8.972458 TGATTATGGAATATGAAACGGAGAAA 57.028 30.769 0.00 0.00 0.00 2.52
3734 4187 3.724374 TGAAACGGAGAAATTCGTCAGT 58.276 40.909 0.00 0.00 38.78 3.41
3745 4198 6.176183 AGAAATTCGTCAGTGGAGATGATTT 58.824 36.000 0.00 0.00 33.81 2.17
3746 4199 6.656693 AGAAATTCGTCAGTGGAGATGATTTT 59.343 34.615 0.00 0.00 38.65 1.82
3747 4200 6.824305 AATTCGTCAGTGGAGATGATTTTT 57.176 33.333 0.00 0.00 33.81 1.94
3783 4240 4.789012 AACTGCACACATTTATTCTGGG 57.211 40.909 0.00 0.00 0.00 4.45
3794 4251 7.671398 ACACATTTATTCTGGGATTTTGTCTCT 59.329 33.333 0.00 0.00 0.00 3.10
3796 4253 9.178758 ACATTTATTCTGGGATTTTGTCTCTAC 57.821 33.333 0.00 0.00 0.00 2.59
3844 4301 6.569179 AATAAAAAGGACAATGCTACACGT 57.431 33.333 0.00 0.00 0.00 4.49
3845 4302 4.483476 AAAAAGGACAATGCTACACGTC 57.517 40.909 0.00 0.00 0.00 4.34
3846 4303 3.402628 AAAGGACAATGCTACACGTCT 57.597 42.857 0.00 0.00 0.00 4.18
3848 4305 0.721718 GGACAATGCTACACGTCTGC 59.278 55.000 0.00 0.00 0.00 4.26
3849 4306 0.721718 GACAATGCTACACGTCTGCC 59.278 55.000 0.00 0.00 0.00 4.85
3850 4307 1.014044 ACAATGCTACACGTCTGCCG 61.014 55.000 0.00 0.00 44.03 5.69
3851 4308 1.447838 AATGCTACACGTCTGCCGG 60.448 57.895 0.00 0.00 42.24 6.13
3853 4310 1.676678 ATGCTACACGTCTGCCGGAT 61.677 55.000 5.05 0.00 42.24 4.18
3855 4312 1.807226 CTACACGTCTGCCGGATGA 59.193 57.895 5.05 0.00 42.24 2.92
3856 4313 0.385751 CTACACGTCTGCCGGATGAT 59.614 55.000 5.05 0.00 42.24 2.45
3857 4314 1.607148 CTACACGTCTGCCGGATGATA 59.393 52.381 5.05 0.00 42.24 2.15
3859 4316 1.206132 ACACGTCTGCCGGATGATAAA 59.794 47.619 5.05 0.00 42.24 1.40
3860 4317 2.158957 ACACGTCTGCCGGATGATAAAT 60.159 45.455 5.05 0.00 42.24 1.40
3862 4319 2.872245 ACGTCTGCCGGATGATAAATTG 59.128 45.455 5.05 0.00 42.24 2.32
3863 4320 3.130633 CGTCTGCCGGATGATAAATTGA 58.869 45.455 5.05 0.00 32.95 2.57
3865 4322 4.214119 CGTCTGCCGGATGATAAATTGATT 59.786 41.667 5.05 0.00 32.95 2.57
3866 4323 5.408299 CGTCTGCCGGATGATAAATTGATTA 59.592 40.000 5.05 0.00 32.95 1.75
3867 4324 6.603095 GTCTGCCGGATGATAAATTGATTAC 58.397 40.000 5.05 0.00 0.00 1.89
3869 4326 6.942005 TCTGCCGGATGATAAATTGATTACAT 59.058 34.615 5.05 0.00 0.00 2.29
3870 4327 7.119699 TCTGCCGGATGATAAATTGATTACATC 59.880 37.037 5.05 0.00 34.61 3.06
3871 4328 6.128309 TGCCGGATGATAAATTGATTACATCG 60.128 38.462 5.05 0.00 35.33 3.84
3872 4329 6.092122 GCCGGATGATAAATTGATTACATCGA 59.908 38.462 5.05 0.00 35.33 3.59
3873 4330 7.201644 GCCGGATGATAAATTGATTACATCGAT 60.202 37.037 5.05 0.00 35.33 3.59
3875 4332 8.052490 CGGATGATAAATTGATTACATCGATCG 58.948 37.037 9.36 9.36 35.33 3.69
3876 4333 7.848051 GGATGATAAATTGATTACATCGATCGC 59.152 37.037 11.09 0.00 35.33 4.58
3877 4334 7.060600 TGATAAATTGATTACATCGATCGCC 57.939 36.000 11.09 0.00 32.19 5.54
3878 4335 6.873605 TGATAAATTGATTACATCGATCGCCT 59.126 34.615 11.09 0.00 32.19 5.52
3879 4336 5.597813 AAATTGATTACATCGATCGCCTC 57.402 39.130 11.09 1.26 32.19 4.70
3888 4345 3.967335 GATCGCCTCGCTAGCCGT 61.967 66.667 9.66 0.00 38.35 5.68
3889 4346 3.882835 GATCGCCTCGCTAGCCGTC 62.883 68.421 9.66 3.97 38.35 4.79
3893 4350 3.288290 CCTCGCTAGCCGTCGGAT 61.288 66.667 17.49 12.48 38.35 4.18
3895 4352 4.266070 TCGCTAGCCGTCGGATGC 62.266 66.667 17.49 14.18 38.35 3.91
3896 4353 4.271816 CGCTAGCCGTCGGATGCT 62.272 66.667 17.49 7.64 41.57 3.79
3899 4356 4.221422 TAGCCGTCGGATGCTGCC 62.221 66.667 17.49 0.00 38.52 4.85
3913 4370 2.281484 TGCCCGAAACAGCTGTCC 60.281 61.111 21.95 14.10 0.00 4.02
3916 4373 1.079127 CCCGAAACAGCTGTCCGAT 60.079 57.895 30.76 15.89 0.00 4.18
3917 4374 1.084370 CCCGAAACAGCTGTCCGATC 61.084 60.000 30.76 20.85 0.00 3.69
3918 4375 0.108615 CCGAAACAGCTGTCCGATCT 60.109 55.000 30.76 11.22 0.00 2.75
3919 4376 1.134367 CCGAAACAGCTGTCCGATCTA 59.866 52.381 30.76 0.00 0.00 1.98
3920 4377 2.186076 CGAAACAGCTGTCCGATCTAC 58.814 52.381 27.33 10.89 0.00 2.59
3921 4378 2.541556 GAAACAGCTGTCCGATCTACC 58.458 52.381 21.95 0.00 0.00 3.18
3922 4379 0.456221 AACAGCTGTCCGATCTACCG 59.544 55.000 21.95 0.00 0.00 4.02
3923 4380 1.299468 CAGCTGTCCGATCTACCGC 60.299 63.158 5.25 4.10 0.00 5.68
3924 4381 2.027751 GCTGTCCGATCTACCGCC 59.972 66.667 0.00 0.00 0.00 6.13
3925 4382 2.491022 GCTGTCCGATCTACCGCCT 61.491 63.158 0.00 0.00 0.00 5.52
3926 4383 1.655329 CTGTCCGATCTACCGCCTC 59.345 63.158 0.00 0.00 0.00 4.70
3928 4385 0.681887 TGTCCGATCTACCGCCTCAA 60.682 55.000 0.00 0.00 0.00 3.02
3929 4386 0.248949 GTCCGATCTACCGCCTCAAC 60.249 60.000 0.00 0.00 0.00 3.18
3930 4387 1.067582 CCGATCTACCGCCTCAACC 59.932 63.158 0.00 0.00 0.00 3.77
3931 4388 1.672854 CCGATCTACCGCCTCAACCA 61.673 60.000 0.00 0.00 0.00 3.67
3932 4389 0.174845 CGATCTACCGCCTCAACCAA 59.825 55.000 0.00 0.00 0.00 3.67
3933 4390 1.653151 GATCTACCGCCTCAACCAAC 58.347 55.000 0.00 0.00 0.00 3.77
3934 4391 1.207329 GATCTACCGCCTCAACCAACT 59.793 52.381 0.00 0.00 0.00 3.16
3935 4392 0.320374 TCTACCGCCTCAACCAACTG 59.680 55.000 0.00 0.00 0.00 3.16
3936 4393 0.320374 CTACCGCCTCAACCAACTGA 59.680 55.000 0.00 0.00 0.00 3.41
3937 4394 0.320374 TACCGCCTCAACCAACTGAG 59.680 55.000 0.00 0.00 42.19 3.35
3941 4398 4.404691 CTCAACCAACTGAGGGGC 57.595 61.111 0.00 0.00 39.39 5.80
3942 4399 1.763770 CTCAACCAACTGAGGGGCT 59.236 57.895 0.00 0.00 39.39 5.19
3943 4400 0.111253 CTCAACCAACTGAGGGGCTT 59.889 55.000 0.00 0.00 39.39 4.35
3944 4401 0.555769 TCAACCAACTGAGGGGCTTT 59.444 50.000 0.00 0.00 0.00 3.51
3946 4403 1.886542 CAACCAACTGAGGGGCTTTAC 59.113 52.381 0.00 0.00 0.00 2.01
3947 4404 1.145571 ACCAACTGAGGGGCTTTACA 58.854 50.000 0.00 0.00 0.00 2.41
3949 4406 1.886542 CCAACTGAGGGGCTTTACAAC 59.113 52.381 0.00 0.00 0.00 3.32
3950 4407 2.582052 CAACTGAGGGGCTTTACAACA 58.418 47.619 0.00 0.00 0.00 3.33
3951 4408 2.955660 CAACTGAGGGGCTTTACAACAA 59.044 45.455 0.00 0.00 0.00 2.83
3952 4409 2.863809 ACTGAGGGGCTTTACAACAAG 58.136 47.619 0.00 0.00 0.00 3.16
3953 4410 2.162681 CTGAGGGGCTTTACAACAAGG 58.837 52.381 0.00 0.00 0.00 3.61
3954 4411 1.777878 TGAGGGGCTTTACAACAAGGA 59.222 47.619 0.00 0.00 0.00 3.36
3955 4412 2.160205 GAGGGGCTTTACAACAAGGAC 58.840 52.381 0.00 0.00 0.00 3.85
3957 4414 1.203013 GGGGCTTTACAACAAGGACCT 60.203 52.381 0.00 0.00 0.00 3.85
3958 4415 2.594131 GGGCTTTACAACAAGGACCTT 58.406 47.619 0.00 0.00 0.00 3.50
3973 4430 2.414750 CCTTGTTGCAAAGGTCCGT 58.585 52.632 0.00 0.00 41.65 4.69
3974 4431 0.310854 CCTTGTTGCAAAGGTCCGTC 59.689 55.000 0.00 0.00 41.65 4.79
3976 4433 1.403679 CTTGTTGCAAAGGTCCGTCAA 59.596 47.619 0.00 0.00 0.00 3.18
3978 4435 1.305201 GTTGCAAAGGTCCGTCAAGA 58.695 50.000 0.00 0.00 0.00 3.02
3979 4436 1.002792 GTTGCAAAGGTCCGTCAAGAC 60.003 52.381 0.00 0.00 35.95 3.01
3980 4437 0.179234 TGCAAAGGTCCGTCAAGACA 59.821 50.000 0.72 0.00 38.59 3.41
3981 4438 1.305201 GCAAAGGTCCGTCAAGACAA 58.695 50.000 0.72 0.00 38.59 3.18
3982 4439 1.002792 GCAAAGGTCCGTCAAGACAAC 60.003 52.381 0.72 0.00 38.59 3.32
3983 4440 2.285083 CAAAGGTCCGTCAAGACAACA 58.715 47.619 0.72 0.00 38.59 3.33
3984 4441 1.949465 AAGGTCCGTCAAGACAACAC 58.051 50.000 0.72 0.00 38.59 3.32
3985 4442 1.120530 AGGTCCGTCAAGACAACACT 58.879 50.000 0.72 0.00 38.59 3.55
3986 4443 1.202533 AGGTCCGTCAAGACAACACTG 60.203 52.381 0.72 0.00 38.59 3.66
3987 4444 1.472728 GGTCCGTCAAGACAACACTGT 60.473 52.381 0.72 0.00 38.59 3.55
3988 4445 2.277084 GTCCGTCAAGACAACACTGTT 58.723 47.619 0.72 0.00 35.30 3.16
3989 4446 2.030457 GTCCGTCAAGACAACACTGTTG 59.970 50.000 18.59 18.59 35.30 3.33
3990 4447 1.330521 CCGTCAAGACAACACTGTTGG 59.669 52.381 22.91 7.92 35.30 3.77
3991 4448 1.268032 CGTCAAGACAACACTGTTGGC 60.268 52.381 22.91 20.98 35.30 4.52
3993 4450 0.385390 CAAGACAACACTGTTGGCCC 59.615 55.000 22.02 12.09 35.30 5.80
3994 4451 1.101049 AAGACAACACTGTTGGCCCG 61.101 55.000 22.02 0.00 35.30 6.13
3996 4453 3.977244 CAACACTGTTGGCCCGCC 61.977 66.667 13.36 0.00 0.00 6.13
3997 4454 4.514585 AACACTGTTGGCCCGCCA 62.515 61.111 3.74 3.74 45.63 5.69
3998 4455 3.808218 AACACTGTTGGCCCGCCAT 62.808 57.895 9.70 0.00 46.64 4.40
4011 4468 4.424566 GCCATGGCACGTTGCTGG 62.425 66.667 32.08 11.38 44.28 4.85
4012 4469 2.985282 CCATGGCACGTTGCTGGT 60.985 61.111 0.00 0.00 44.28 4.00
4013 4470 2.256158 CATGGCACGTTGCTGGTG 59.744 61.111 9.31 0.00 44.28 4.17
4015 4472 3.790416 ATGGCACGTTGCTGGTGGT 62.790 57.895 9.31 0.00 44.28 4.16
4017 4474 4.012895 GCACGTTGCTGGTGGTCG 62.013 66.667 0.00 0.00 40.96 4.79
4018 4475 3.345808 CACGTTGCTGGTGGTCGG 61.346 66.667 0.00 0.00 0.00 4.79
4019 4476 3.542676 ACGTTGCTGGTGGTCGGA 61.543 61.111 0.00 0.00 0.00 4.55
4020 4477 2.738521 CGTTGCTGGTGGTCGGAG 60.739 66.667 0.00 0.00 0.00 4.63
4022 4479 3.241530 TTGCTGGTGGTCGGAGCT 61.242 61.111 8.82 0.00 33.66 4.09
4024 4481 4.008933 GCTGGTGGTCGGAGCTGT 62.009 66.667 8.82 0.00 0.00 4.40
4026 4483 3.633094 CTGGTGGTCGGAGCTGTCG 62.633 68.421 8.82 0.00 0.00 4.35
4035 4492 4.863925 GAGCTGTCGCGCCTCCTC 62.864 72.222 0.00 0.70 42.32 3.71
4064 4521 3.150335 CCCGAGCAGCTGCCTCTA 61.150 66.667 34.39 0.00 43.38 2.43
4065 4522 2.105930 CCGAGCAGCTGCCTCTAC 59.894 66.667 34.39 18.77 43.38 2.59
4066 4523 2.422231 CCGAGCAGCTGCCTCTACT 61.422 63.158 34.39 15.79 43.38 2.57
4067 4524 1.065600 CGAGCAGCTGCCTCTACTC 59.934 63.158 34.39 22.31 43.38 2.59
4068 4525 1.441311 GAGCAGCTGCCTCTACTCC 59.559 63.158 34.39 10.16 43.38 3.85
4075 4532 1.304134 TGCCTCTACTCCAGCACGA 60.304 57.895 0.00 0.00 0.00 4.35
4085 4542 2.865603 CAGCACGACGACGACGAG 60.866 66.667 25.15 18.37 42.66 4.18
4087 4544 4.738345 GCACGACGACGACGAGCT 62.738 66.667 27.24 5.35 42.10 4.09
4088 4545 2.571096 CACGACGACGACGAGCTC 60.571 66.667 25.15 2.73 42.66 4.09
4097 6515 4.700037 GACGAGCTCTCATGTCGG 57.300 61.111 12.85 0.00 38.03 4.79
4100 6518 2.895680 GAGCTCTCATGTCGGGCA 59.104 61.111 6.43 0.00 0.00 5.36
4102 6520 0.179062 GAGCTCTCATGTCGGGCATT 60.179 55.000 6.43 0.00 35.19 3.56
4108 6526 1.402968 CTCATGTCGGGCATTCCTTTG 59.597 52.381 0.00 0.00 35.19 2.77
4109 6527 0.457035 CATGTCGGGCATTCCTTTGG 59.543 55.000 0.00 0.00 35.19 3.28
4110 6528 1.322538 ATGTCGGGCATTCCTTTGGC 61.323 55.000 0.00 0.00 41.20 4.52
4111 6529 2.749839 TCGGGCATTCCTTTGGCG 60.750 61.111 0.00 0.00 42.75 5.69
4114 6532 1.666209 CGGGCATTCCTTTGGCGATT 61.666 55.000 0.00 0.00 42.75 3.34
4117 6535 1.478105 GGCATTCCTTTGGCGATTTCT 59.522 47.619 0.00 0.00 32.10 2.52
4118 6536 2.533266 GCATTCCTTTGGCGATTTCTG 58.467 47.619 0.00 0.00 0.00 3.02
4119 6537 2.533266 CATTCCTTTGGCGATTTCTGC 58.467 47.619 0.00 0.00 0.00 4.26
4120 6538 1.614996 TTCCTTTGGCGATTTCTGCA 58.385 45.000 0.00 0.00 0.00 4.41
4121 6539 1.614996 TCCTTTGGCGATTTCTGCAA 58.385 45.000 0.00 0.00 0.00 4.08
4123 6541 1.270550 CCTTTGGCGATTTCTGCAACT 59.729 47.619 0.00 0.00 0.00 3.16
4124 6542 2.322161 CTTTGGCGATTTCTGCAACTG 58.678 47.619 0.00 0.00 0.00 3.16
4125 6543 1.603456 TTGGCGATTTCTGCAACTGA 58.397 45.000 0.00 0.00 0.00 3.41
4126 6544 1.603456 TGGCGATTTCTGCAACTGAA 58.397 45.000 0.00 0.00 0.00 3.02
4127 6545 1.536766 TGGCGATTTCTGCAACTGAAG 59.463 47.619 0.00 0.00 0.00 3.02
4129 6547 1.198637 GCGATTTCTGCAACTGAAGCT 59.801 47.619 0.00 0.00 0.00 3.74
4131 6549 3.064545 GCGATTTCTGCAACTGAAGCTAT 59.935 43.478 0.00 0.00 0.00 2.97
4132 6550 4.585364 CGATTTCTGCAACTGAAGCTATG 58.415 43.478 0.00 0.00 0.00 2.23
4133 6551 4.093998 CGATTTCTGCAACTGAAGCTATGT 59.906 41.667 0.00 0.00 0.00 2.29
4134 6552 5.391310 CGATTTCTGCAACTGAAGCTATGTT 60.391 40.000 0.00 0.00 0.00 2.71
4135 6553 5.772825 TTTCTGCAACTGAAGCTATGTTT 57.227 34.783 0.00 0.00 0.00 2.83
4137 6555 4.645535 TCTGCAACTGAAGCTATGTTTCT 58.354 39.130 0.00 0.00 0.00 2.52
4139 6557 4.388485 TGCAACTGAAGCTATGTTTCTGA 58.612 39.130 7.69 0.00 0.00 3.27
4140 6558 4.821260 TGCAACTGAAGCTATGTTTCTGAA 59.179 37.500 7.69 0.00 0.00 3.02
4142 6560 5.626955 GCAACTGAAGCTATGTTTCTGAAAC 59.373 40.000 22.94 22.94 41.73 2.78
4151 6569 1.937223 TGTTTCTGAAACATGCGTCGT 59.063 42.857 27.14 0.00 45.79 4.34
4154 6572 1.577468 TCTGAAACATGCGTCGTGTT 58.423 45.000 10.40 10.40 44.22 3.32
4155 6573 1.260297 TCTGAAACATGCGTCGTGTTG 59.740 47.619 15.07 6.40 41.92 3.33
4156 6574 0.316607 TGAAACATGCGTCGTGTTGC 60.317 50.000 15.07 14.04 41.92 4.17
4159 6577 0.310543 AACATGCGTCGTGTTGCAAT 59.689 45.000 0.59 0.00 45.45 3.56
4160 6578 0.385849 ACATGCGTCGTGTTGCAATG 60.386 50.000 0.59 0.00 45.45 2.82
4161 6579 1.442520 ATGCGTCGTGTTGCAATGC 60.443 52.632 0.59 0.00 45.45 3.56
4163 6581 1.370414 GCGTCGTGTTGCAATGCTT 60.370 52.632 6.82 0.00 0.00 3.91
4165 6583 1.869503 CGTCGTGTTGCAATGCTTAG 58.130 50.000 6.82 0.00 0.00 2.18
4166 6584 1.194547 CGTCGTGTTGCAATGCTTAGT 59.805 47.619 6.82 0.00 0.00 2.24
4167 6585 2.721797 CGTCGTGTTGCAATGCTTAGTC 60.722 50.000 6.82 0.00 0.00 2.59
4168 6586 2.480419 GTCGTGTTGCAATGCTTAGTCT 59.520 45.455 6.82 0.00 0.00 3.24
4169 6587 2.736721 TCGTGTTGCAATGCTTAGTCTC 59.263 45.455 6.82 0.00 0.00 3.36
4171 6589 1.464608 TGTTGCAATGCTTAGTCTCGC 59.535 47.619 6.82 0.00 0.00 5.03
4172 6590 1.464608 GTTGCAATGCTTAGTCTCGCA 59.535 47.619 6.82 0.00 40.87 5.10
4174 6592 1.667212 TGCAATGCTTAGTCTCGCATG 59.333 47.619 6.82 0.00 45.41 4.06
4177 6595 1.863267 ATGCTTAGTCTCGCATGCTC 58.137 50.000 17.13 3.64 44.53 4.26
4178 6596 0.820226 TGCTTAGTCTCGCATGCTCT 59.180 50.000 17.13 10.85 0.00 4.09
4181 6599 2.792116 GCTTAGTCTCGCATGCTCTAAC 59.208 50.000 17.13 8.55 0.00 2.34
4186 6604 2.582226 CGCATGCTCTAACGCGGA 60.582 61.111 17.13 0.00 43.84 5.54
4188 6606 1.490693 CGCATGCTCTAACGCGGAAT 61.491 55.000 17.13 0.00 43.84 3.01
4189 6607 0.041839 GCATGCTCTAACGCGGAATG 60.042 55.000 12.47 3.18 0.00 2.67
4190 6608 0.041839 CATGCTCTAACGCGGAATGC 60.042 55.000 12.47 8.75 41.47 3.56
4191 6609 0.179073 ATGCTCTAACGCGGAATGCT 60.179 50.000 12.47 0.00 43.27 3.79
4192 6610 0.806102 TGCTCTAACGCGGAATGCTC 60.806 55.000 12.47 0.00 43.27 4.26
4195 6613 0.102481 TCTAACGCGGAATGCTCCTC 59.898 55.000 12.47 0.00 43.27 3.71
4198 6616 2.587194 CGCGGAATGCTCCTCCAG 60.587 66.667 0.00 0.00 43.27 3.86
4207 6625 2.315246 GCTCCTCCAGCGCTTTATG 58.685 57.895 7.50 0.00 38.76 1.90
4208 6626 1.780025 GCTCCTCCAGCGCTTTATGC 61.780 60.000 7.50 3.96 38.76 3.14
4209 6627 0.462581 CTCCTCCAGCGCTTTATGCA 60.463 55.000 7.50 0.00 43.06 3.96
4210 6628 0.035534 TCCTCCAGCGCTTTATGCAA 60.036 50.000 7.50 0.00 43.06 4.08
4211 6629 0.099436 CCTCCAGCGCTTTATGCAAC 59.901 55.000 7.50 0.00 43.06 4.17
4212 6630 0.099436 CTCCAGCGCTTTATGCAACC 59.901 55.000 7.50 0.00 43.06 3.77
4213 6631 1.226379 CCAGCGCTTTATGCAACCG 60.226 57.895 7.50 0.00 43.06 4.44
4214 6632 1.226379 CAGCGCTTTATGCAACCGG 60.226 57.895 7.50 0.00 43.06 5.28
4215 6633 2.102161 GCGCTTTATGCAACCGGG 59.898 61.111 6.32 0.00 43.06 5.73
4217 6635 2.494445 GCTTTATGCAACCGGGGC 59.506 61.111 6.32 10.31 42.31 5.80
4218 6636 2.052104 GCTTTATGCAACCGGGGCT 61.052 57.895 19.32 9.05 42.31 5.19
4219 6637 0.750182 GCTTTATGCAACCGGGGCTA 60.750 55.000 19.32 8.09 42.31 3.93
4220 6638 1.981256 CTTTATGCAACCGGGGCTAT 58.019 50.000 19.32 13.57 0.00 2.97
4221 6639 1.608590 CTTTATGCAACCGGGGCTATG 59.391 52.381 19.32 5.66 0.00 2.23
4222 6640 0.548989 TTATGCAACCGGGGCTATGT 59.451 50.000 19.32 7.40 0.00 2.29
4223 6641 0.548989 TATGCAACCGGGGCTATGTT 59.451 50.000 19.32 0.00 0.00 2.71
4224 6642 0.324275 ATGCAACCGGGGCTATGTTT 60.324 50.000 19.32 0.00 0.00 2.83
4225 6643 0.540830 TGCAACCGGGGCTATGTTTT 60.541 50.000 19.32 0.00 0.00 2.43
4226 6644 0.606096 GCAACCGGGGCTATGTTTTT 59.394 50.000 6.32 0.00 0.00 1.94
4227 6645 1.671556 GCAACCGGGGCTATGTTTTTG 60.672 52.381 6.32 0.00 0.00 2.44
4228 6646 1.889829 CAACCGGGGCTATGTTTTTGA 59.110 47.619 6.32 0.00 0.00 2.69
4229 6647 2.296073 ACCGGGGCTATGTTTTTGAA 57.704 45.000 6.32 0.00 0.00 2.69
4230 6648 2.599677 ACCGGGGCTATGTTTTTGAAA 58.400 42.857 6.32 0.00 0.00 2.69
4231 6649 2.297880 ACCGGGGCTATGTTTTTGAAAC 59.702 45.455 6.32 0.00 0.00 2.78
4232 6650 2.297597 CCGGGGCTATGTTTTTGAAACA 59.702 45.455 8.49 8.49 34.31 2.83
4233 6651 3.243907 CCGGGGCTATGTTTTTGAAACAA 60.244 43.478 9.93 0.00 33.42 2.83
4234 6652 3.987220 CGGGGCTATGTTTTTGAAACAAG 59.013 43.478 9.93 9.61 33.42 3.16
4235 6653 4.261825 CGGGGCTATGTTTTTGAAACAAGA 60.262 41.667 9.93 1.96 33.42 3.02
4236 6654 4.988540 GGGGCTATGTTTTTGAAACAAGAC 59.011 41.667 9.93 10.25 33.42 3.01
4237 6655 4.988540 GGGCTATGTTTTTGAAACAAGACC 59.011 41.667 17.03 17.03 33.03 3.85
4238 6656 4.988540 GGCTATGTTTTTGAAACAAGACCC 59.011 41.667 9.93 5.59 33.42 4.46
4239 6657 5.452636 GGCTATGTTTTTGAAACAAGACCCA 60.453 40.000 9.93 0.00 33.42 4.51
4240 6658 6.223120 GCTATGTTTTTGAAACAAGACCCAT 58.777 36.000 9.93 0.00 33.42 4.00
4241 6659 7.375053 GCTATGTTTTTGAAACAAGACCCATA 58.625 34.615 9.93 0.00 33.42 2.74
4242 6660 8.034804 GCTATGTTTTTGAAACAAGACCCATAT 58.965 33.333 9.93 0.00 33.42 1.78
4243 6661 9.927668 CTATGTTTTTGAAACAAGACCCATATT 57.072 29.630 9.93 0.00 33.42 1.28
4244 6662 8.606040 ATGTTTTTGAAACAAGACCCATATTG 57.394 30.769 9.93 0.00 33.42 1.90
4245 6663 6.481644 TGTTTTTGAAACAAGACCCATATTGC 59.518 34.615 3.92 0.00 29.64 3.56
4246 6664 5.798125 TTTGAAACAAGACCCATATTGCA 57.202 34.783 0.00 0.00 29.64 4.08
4247 6665 5.389859 TTGAAACAAGACCCATATTGCAG 57.610 39.130 0.00 0.00 29.64 4.41
4248 6666 4.661222 TGAAACAAGACCCATATTGCAGA 58.339 39.130 0.00 0.00 29.64 4.26
4249 6667 5.076182 TGAAACAAGACCCATATTGCAGAA 58.924 37.500 0.00 0.00 29.64 3.02
4250 6668 5.183713 TGAAACAAGACCCATATTGCAGAAG 59.816 40.000 0.00 0.00 29.64 2.85
4251 6669 4.574674 ACAAGACCCATATTGCAGAAGA 57.425 40.909 0.00 0.00 29.64 2.87
4252 6670 4.922206 ACAAGACCCATATTGCAGAAGAA 58.078 39.130 0.00 0.00 29.64 2.52
4253 6671 5.324409 ACAAGACCCATATTGCAGAAGAAA 58.676 37.500 0.00 0.00 29.64 2.52
4254 6672 5.774690 ACAAGACCCATATTGCAGAAGAAAA 59.225 36.000 0.00 0.00 29.64 2.29
4255 6673 6.267471 ACAAGACCCATATTGCAGAAGAAAAA 59.733 34.615 0.00 0.00 29.64 1.94
4299 6717 7.645058 TTTTCTTCTTTCTGAAACATGACCT 57.355 32.000 0.00 0.00 33.79 3.85
4300 6718 7.645058 TTTCTTCTTTCTGAAACATGACCTT 57.355 32.000 0.00 0.00 33.79 3.50
4301 6719 7.645058 TTCTTCTTTCTGAAACATGACCTTT 57.355 32.000 0.00 0.00 33.79 3.11
4302 6720 7.031226 TCTTCTTTCTGAAACATGACCTTTG 57.969 36.000 0.00 0.00 33.79 2.77
4303 6721 6.603201 TCTTCTTTCTGAAACATGACCTTTGT 59.397 34.615 0.00 0.00 33.79 2.83
4304 6722 6.773976 TCTTTCTGAAACATGACCTTTGTT 57.226 33.333 0.00 0.00 38.91 2.83
4305 6723 6.795399 TCTTTCTGAAACATGACCTTTGTTC 58.205 36.000 0.00 0.00 36.32 3.18
4306 6724 5.514274 TTCTGAAACATGACCTTTGTTCC 57.486 39.130 0.00 0.00 36.32 3.62
4307 6725 4.531854 TCTGAAACATGACCTTTGTTCCA 58.468 39.130 0.00 0.00 36.32 3.53
4308 6726 4.580167 TCTGAAACATGACCTTTGTTCCAG 59.420 41.667 0.00 0.00 39.83 3.86
4309 6727 3.636300 TGAAACATGACCTTTGTTCCAGG 59.364 43.478 0.00 0.00 36.32 4.45
4310 6728 3.593442 AACATGACCTTTGTTCCAGGA 57.407 42.857 0.00 0.00 31.87 3.86
4311 6729 2.863809 ACATGACCTTTGTTCCAGGAC 58.136 47.619 0.00 0.00 35.14 3.85
4312 6730 2.174639 ACATGACCTTTGTTCCAGGACA 59.825 45.455 0.00 0.00 39.86 4.02
4313 6731 3.181429 ACATGACCTTTGTTCCAGGACAT 60.181 43.478 0.00 0.00 44.53 3.06
4314 6732 3.593442 TGACCTTTGTTCCAGGACATT 57.407 42.857 0.00 0.00 32.07 2.71
4315 6733 3.486383 TGACCTTTGTTCCAGGACATTC 58.514 45.455 0.00 0.00 32.07 2.67
4316 6734 3.138283 TGACCTTTGTTCCAGGACATTCT 59.862 43.478 0.00 0.00 32.07 2.40
4317 6735 3.490348 ACCTTTGTTCCAGGACATTCTG 58.510 45.455 0.00 0.00 35.14 3.02
4318 6736 3.138283 ACCTTTGTTCCAGGACATTCTGA 59.862 43.478 0.00 0.00 36.93 3.27
4319 6737 4.144297 CCTTTGTTCCAGGACATTCTGAA 58.856 43.478 0.00 0.00 36.93 3.02
4320 6738 4.584325 CCTTTGTTCCAGGACATTCTGAAA 59.416 41.667 0.00 0.00 36.93 2.69
4321 6739 5.507985 CCTTTGTTCCAGGACATTCTGAAAC 60.508 44.000 0.00 0.00 36.93 2.78
4322 6740 4.437682 TGTTCCAGGACATTCTGAAACT 57.562 40.909 0.00 0.00 33.89 2.66
4323 6741 5.560722 TGTTCCAGGACATTCTGAAACTA 57.439 39.130 0.00 0.00 33.89 2.24
4324 6742 5.551233 TGTTCCAGGACATTCTGAAACTAG 58.449 41.667 0.00 0.00 33.89 2.57
4325 6743 5.306937 TGTTCCAGGACATTCTGAAACTAGA 59.693 40.000 0.00 0.00 33.89 2.43
4326 6744 6.013379 TGTTCCAGGACATTCTGAAACTAGAT 60.013 38.462 0.00 0.00 33.89 1.98
4327 6745 6.227298 TCCAGGACATTCTGAAACTAGATC 57.773 41.667 0.00 0.00 36.93 2.75
4328 6746 5.721480 TCCAGGACATTCTGAAACTAGATCA 59.279 40.000 0.00 0.00 36.93 2.92
4329 6747 6.385176 TCCAGGACATTCTGAAACTAGATCAT 59.615 38.462 0.00 0.00 36.93 2.45
4330 6748 6.482641 CCAGGACATTCTGAAACTAGATCATG 59.517 42.308 0.00 0.00 36.93 3.07
4331 6749 7.046652 CAGGACATTCTGAAACTAGATCATGT 58.953 38.462 0.00 2.55 36.93 3.21
4332 6750 7.551974 CAGGACATTCTGAAACTAGATCATGTT 59.448 37.037 0.00 0.00 36.93 2.71
4333 6751 7.551974 AGGACATTCTGAAACTAGATCATGTTG 59.448 37.037 0.00 1.83 31.60 3.33
4334 6752 7.550551 GGACATTCTGAAACTAGATCATGTTGA 59.449 37.037 0.00 0.00 31.60 3.18
4335 6753 9.107177 GACATTCTGAAACTAGATCATGTTGAT 57.893 33.333 0.00 0.00 40.34 2.57
4336 6754 8.890718 ACATTCTGAAACTAGATCATGTTGATG 58.109 33.333 0.00 4.15 37.20 3.07
4337 6755 9.106070 CATTCTGAAACTAGATCATGTTGATGA 57.894 33.333 0.00 0.00 42.92 2.92
4338 6756 9.676861 ATTCTGAAACTAGATCATGTTGATGAA 57.323 29.630 0.00 5.60 42.02 2.57
4339 6757 9.506018 TTCTGAAACTAGATCATGTTGATGAAA 57.494 29.630 0.00 0.00 42.02 2.69
4340 6758 9.506018 TCTGAAACTAGATCATGTTGATGAAAA 57.494 29.630 0.00 0.00 42.02 2.29
4388 6806 8.786826 TTTTCTTTCTGAAACAAGACTAGACA 57.213 30.769 0.00 0.00 43.55 3.41
4389 6807 7.772332 TTCTTTCTGAAACAAGACTAGACAC 57.228 36.000 0.00 0.00 0.00 3.67
4390 6808 6.873997 TCTTTCTGAAACAAGACTAGACACA 58.126 36.000 0.00 0.00 0.00 3.72
4391 6809 7.327975 TCTTTCTGAAACAAGACTAGACACAA 58.672 34.615 0.00 0.00 0.00 3.33
4393 6811 7.539712 TTCTGAAACAAGACTAGACACAAAG 57.460 36.000 0.00 0.00 0.00 2.77
4394 6812 5.523916 TCTGAAACAAGACTAGACACAAAGC 59.476 40.000 0.00 0.00 0.00 3.51
4395 6813 5.182487 TGAAACAAGACTAGACACAAAGCA 58.818 37.500 0.00 0.00 0.00 3.91
4396 6814 5.645929 TGAAACAAGACTAGACACAAAGCAA 59.354 36.000 0.00 0.00 0.00 3.91
4397 6815 6.318648 TGAAACAAGACTAGACACAAAGCAAT 59.681 34.615 0.00 0.00 0.00 3.56
4399 6817 6.787085 ACAAGACTAGACACAAAGCAATAC 57.213 37.500 0.00 0.00 0.00 1.89
4400 6818 6.288294 ACAAGACTAGACACAAAGCAATACA 58.712 36.000 0.00 0.00 0.00 2.29
4401 6819 6.202954 ACAAGACTAGACACAAAGCAATACAC 59.797 38.462 0.00 0.00 0.00 2.90
4403 6821 5.012148 AGACTAGACACAAAGCAATACACCT 59.988 40.000 0.00 0.00 0.00 4.00
4404 6822 5.621193 ACTAGACACAAAGCAATACACCTT 58.379 37.500 0.00 0.00 0.00 3.50
4405 6823 4.836125 AGACACAAAGCAATACACCTTG 57.164 40.909 0.00 0.00 0.00 3.61
4413 7984 2.061028 GCAATACACCTTGCTTTGTGC 58.939 47.619 1.72 0.00 46.32 4.57
4425 7996 2.946564 GCTTTGTGCAATTAGGGTGAC 58.053 47.619 0.00 0.00 42.31 3.67
4459 8030 6.094881 ACATTTGTGTATTCATTACCCCTTCG 59.905 38.462 0.00 0.00 0.00 3.79
4472 8043 3.463944 ACCCCTTCGCTCGTTTTATATG 58.536 45.455 0.00 0.00 0.00 1.78
4476 8047 1.493772 TCGCTCGTTTTATATGGCGG 58.506 50.000 0.00 0.00 42.33 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 7.447238 ACAATTATAGAGAGAGCAGAGGAGTAC 59.553 40.741 0.00 0.00 0.00 2.73
21 22 7.704472 AGACGAAAACAATTATAGAGAGAGCAG 59.296 37.037 0.00 0.00 0.00 4.24
101 103 7.766283 AGGAATATTCAAAGTAAGAGCAAAGC 58.234 34.615 17.07 0.00 0.00 3.51
217 219 7.235079 TGGGAAGATTTGAGGTATTGTTTACA 58.765 34.615 0.00 0.00 0.00 2.41
295 297 6.260050 GGCTCGAGATATATTTTTGTTGGTGA 59.740 38.462 18.75 0.00 0.00 4.02
339 341 4.118168 TGCCCTCTTCTCCTTTGATTTT 57.882 40.909 0.00 0.00 0.00 1.82
345 347 0.701147 CCCTTGCCCTCTTCTCCTTT 59.299 55.000 0.00 0.00 0.00 3.11
346 348 1.857638 GCCCTTGCCCTCTTCTCCTT 61.858 60.000 0.00 0.00 0.00 3.36
392 399 2.359169 ATCCTCTGAGGCCGCGAAA 61.359 57.895 19.08 0.00 34.61 3.46
481 501 3.811083 TGCGAACCAAAACTAAGGAGAA 58.189 40.909 0.00 0.00 0.00 2.87
540 586 1.754234 GGGCCCGCTTGTCATTCAT 60.754 57.895 5.69 0.00 0.00 2.57
632 691 1.959985 GCGAGAGAATGGGAGAGATCA 59.040 52.381 0.00 0.00 0.00 2.92
802 861 0.248289 TAAGAAAGAAGCCCGACCCG 59.752 55.000 0.00 0.00 0.00 5.28
815 874 8.555361 GGCTTGTTGTATTTGCAATTTAAGAAA 58.445 29.630 0.00 0.00 0.00 2.52
859 918 0.107165 GGGCCTAGATTTTGAGCCGT 60.107 55.000 0.84 0.00 44.82 5.68
864 928 3.903208 GGCTGGGCCTAGATTTTGA 57.097 52.632 22.15 0.00 46.69 2.69
1077 1147 2.034221 GGCTTCTCGGGCAGGTTT 59.966 61.111 0.00 0.00 0.00 3.27
1137 1207 2.435059 GACTTGGGCTGCTCGTCC 60.435 66.667 0.00 0.00 38.12 4.79
1230 1300 2.815647 GCGCACCTGTACTGCTCC 60.816 66.667 0.30 0.00 32.03 4.70
1336 1409 2.886587 CCGTGTAATTCGGGTCAAAC 57.113 50.000 0.00 0.00 43.68 2.93
1511 1596 7.435784 CACAACATCAAAACATCAGACAATTGA 59.564 33.333 13.59 0.00 0.00 2.57
1602 1687 0.745845 CCTGTGATGGGCTGTACTGC 60.746 60.000 15.79 15.79 0.00 4.40
1719 1804 4.965814 TGACAGAAGAAGGGCATCATATC 58.034 43.478 0.00 0.00 0.00 1.63
1849 1935 3.844211 ACAGGGCCTTAGTGATCTAAACA 59.156 43.478 1.32 0.00 35.98 2.83
1867 1953 1.670295 GCAAAAGCCCAAACAAACAGG 59.330 47.619 0.00 0.00 0.00 4.00
1894 1980 5.535753 AGCCATAAAAGCTCAAACAAACT 57.464 34.783 0.00 0.00 34.91 2.66
1895 1981 6.603237 AAAGCCATAAAAGCTCAAACAAAC 57.397 33.333 0.00 0.00 40.49 2.93
1898 1984 5.526846 CCAAAAAGCCATAAAAGCTCAAACA 59.473 36.000 0.00 0.00 40.49 2.83
1899 1985 5.560760 GCCAAAAAGCCATAAAAGCTCAAAC 60.561 40.000 0.00 0.00 40.49 2.93
1900 1986 4.514816 GCCAAAAAGCCATAAAAGCTCAAA 59.485 37.500 0.00 0.00 40.49 2.69
1901 1987 4.064388 GCCAAAAAGCCATAAAAGCTCAA 58.936 39.130 0.00 0.00 40.49 3.02
1902 1988 3.663025 GCCAAAAAGCCATAAAAGCTCA 58.337 40.909 0.00 0.00 40.49 4.26
1923 2138 2.529780 TTGCAGCATTTCCACTTTGG 57.470 45.000 0.00 0.00 39.43 3.28
1996 2211 7.107542 ACACTCCCGCTGTAAAGAAATATAAA 58.892 34.615 0.00 0.00 0.00 1.40
2181 2418 4.018779 TGGTATGGTTTGCTAAGCTAGGTT 60.019 41.667 12.54 12.54 32.98 3.50
2182 2419 3.521937 TGGTATGGTTTGCTAAGCTAGGT 59.478 43.478 11.21 0.00 32.98 3.08
2183 2420 3.877508 GTGGTATGGTTTGCTAAGCTAGG 59.122 47.826 11.21 0.00 32.98 3.02
2184 2421 4.332819 GTGTGGTATGGTTTGCTAAGCTAG 59.667 45.833 11.21 0.00 32.98 3.42
2185 2422 4.258543 GTGTGGTATGGTTTGCTAAGCTA 58.741 43.478 11.21 0.00 32.98 3.32
2186 2423 3.081804 GTGTGGTATGGTTTGCTAAGCT 58.918 45.455 11.21 0.52 32.98 3.74
2187 2424 2.163613 GGTGTGGTATGGTTTGCTAAGC 59.836 50.000 3.02 3.02 0.00 3.09
2188 2425 3.417101 TGGTGTGGTATGGTTTGCTAAG 58.583 45.455 0.00 0.00 0.00 2.18
2189 2426 3.510531 TGGTGTGGTATGGTTTGCTAA 57.489 42.857 0.00 0.00 0.00 3.09
2190 2427 3.009584 TCATGGTGTGGTATGGTTTGCTA 59.990 43.478 0.00 0.00 0.00 3.49
2191 2428 2.170166 CATGGTGTGGTATGGTTTGCT 58.830 47.619 0.00 0.00 0.00 3.91
2192 2429 2.166829 TCATGGTGTGGTATGGTTTGC 58.833 47.619 0.00 0.00 0.00 3.68
2193 2430 6.713762 AATATCATGGTGTGGTATGGTTTG 57.286 37.500 0.00 0.00 34.35 2.93
2194 2431 7.732222 AAAATATCATGGTGTGGTATGGTTT 57.268 32.000 0.00 0.00 34.35 3.27
2470 2847 8.532819 ACAGTTTGAGGTAGTATTTCTTCCTAG 58.467 37.037 0.00 0.00 42.68 3.02
2482 2859 5.760253 CAGACAATGAACAGTTTGAGGTAGT 59.240 40.000 0.00 0.00 0.00 2.73
2490 2867 6.352516 AGAAGTCTCAGACAATGAACAGTTT 58.647 36.000 7.77 0.00 37.52 2.66
2577 2954 4.701956 ACTTGGTTTCTGCATATTTCGG 57.298 40.909 0.00 0.00 0.00 4.30
2579 2956 7.713764 AACAAACTTGGTTTCTGCATATTTC 57.286 32.000 0.00 0.00 33.10 2.17
2645 3022 7.455058 TGTACACCAGTATTGTAGGAACATTT 58.545 34.615 0.00 0.00 34.97 2.32
2714 3091 1.686052 GGTGTGCATTTCTTTCCACCA 59.314 47.619 12.54 0.00 41.51 4.17
2795 3198 7.443879 ACAATATTTTTGCCCAACCAACTAAAG 59.556 33.333 0.00 0.00 0.00 1.85
2836 3239 2.961721 CGCACACGCACACAGTCT 60.962 61.111 0.00 0.00 38.40 3.24
2837 3240 3.261951 ACGCACACGCACACAGTC 61.262 61.111 0.00 0.00 45.53 3.51
2840 3243 3.858989 CACACGCACACGCACACA 61.859 61.111 0.00 0.00 45.53 3.72
2852 3255 4.918060 CACACGCACACGCACACG 62.918 66.667 0.00 0.00 45.53 4.49
2858 3261 4.918060 CACACGCACACGCACACG 62.918 66.667 0.00 0.00 45.53 4.49
2864 3267 4.918060 CACACGCACACGCACACG 62.918 66.667 0.00 0.00 45.53 4.49
2865 3268 3.860125 ACACACGCACACGCACAC 61.860 61.111 0.00 0.00 45.53 3.82
2866 3269 3.858989 CACACACGCACACGCACA 61.859 61.111 0.00 0.00 45.53 4.57
2867 3270 3.860125 ACACACACGCACACGCAC 61.860 61.111 0.00 0.00 45.53 5.34
2868 3271 3.858989 CACACACACGCACACGCA 61.859 61.111 0.00 0.00 45.53 5.24
2869 3272 3.860125 ACACACACACGCACACGC 61.860 61.111 0.00 0.00 45.53 5.34
2871 3274 1.225991 CACACACACACACGCACAC 60.226 57.895 0.00 0.00 0.00 3.82
2872 3275 1.669437 ACACACACACACACGCACA 60.669 52.632 0.00 0.00 0.00 4.57
2873 3276 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
2874 3277 1.669437 ACACACACACACACACGCA 60.669 52.632 0.00 0.00 0.00 5.24
2875 3278 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
2876 3279 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
2877 3280 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2878 3281 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2879 3282 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
2880 3283 1.872468 GCACACACACACACACACA 59.128 52.632 0.00 0.00 0.00 3.72
2881 3284 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
2882 3285 3.033166 GCGCACACACACACACACA 62.033 57.895 0.30 0.00 0.00 3.72
2883 3286 2.277247 GCGCACACACACACACAC 60.277 61.111 0.30 0.00 0.00 3.82
2884 3287 3.858989 CGCGCACACACACACACA 61.859 61.111 8.75 0.00 0.00 3.72
2897 3300 3.523873 GCAACTTTAAGCGCGCGC 61.524 61.111 45.10 45.10 42.33 6.86
2898 3301 1.065031 ATTGCAACTTTAAGCGCGCG 61.065 50.000 28.44 28.44 0.00 6.86
2899 3302 1.059942 AATTGCAACTTTAAGCGCGC 58.940 45.000 26.66 26.66 0.00 6.86
2900 3303 2.276282 GCTAATTGCAACTTTAAGCGCG 59.724 45.455 0.00 0.00 42.31 6.86
2901 3304 2.598637 GGCTAATTGCAACTTTAAGCGC 59.401 45.455 0.00 0.00 45.15 5.92
2902 3305 3.832276 TGGCTAATTGCAACTTTAAGCG 58.168 40.909 0.00 0.00 45.15 4.68
2924 3327 1.351153 TGCGAATTGTATCGTGCGAA 58.649 45.000 0.00 0.00 44.49 4.70
2930 3333 2.032894 AGCCGAATTGCGAATTGTATCG 60.033 45.455 0.00 0.00 44.57 2.92
2941 3344 1.463444 AGTCACGTTAAGCCGAATTGC 59.537 47.619 0.00 0.00 0.00 3.56
2994 3428 7.384115 TGAACATGTTTTCCTCTTAGTACGAAG 59.616 37.037 13.36 9.27 0.00 3.79
3044 3478 6.207417 GCAAACATACAGCAGGACCATATATT 59.793 38.462 0.00 0.00 0.00 1.28
3058 3492 3.853831 TGATGCAAGGCAAACATACAG 57.146 42.857 0.00 0.00 43.62 2.74
3192 3629 7.630242 ATCCATTGTCGTTTCTTATTCACAT 57.370 32.000 0.00 0.00 0.00 3.21
3212 3649 8.296713 GTGTAATTTAAGTGAGCAAGAAATCCA 58.703 33.333 0.00 0.00 0.00 3.41
3219 3656 5.408604 AGTCGGTGTAATTTAAGTGAGCAAG 59.591 40.000 0.00 0.00 0.00 4.01
3221 3658 4.688879 CAGTCGGTGTAATTTAAGTGAGCA 59.311 41.667 0.00 0.00 0.00 4.26
3222 3659 4.927425 TCAGTCGGTGTAATTTAAGTGAGC 59.073 41.667 0.00 0.00 0.00 4.26
3223 3660 6.590292 ACATCAGTCGGTGTAATTTAAGTGAG 59.410 38.462 0.00 0.00 0.00 3.51
3253 3692 4.651994 CATGACACTTAAAGATTCCGTGC 58.348 43.478 0.00 0.00 0.00 5.34
3287 3726 6.202570 CAGAATGGAAGTCTAGCATAAAGAGC 59.797 42.308 0.00 0.00 40.65 4.09
3305 3744 5.346822 GCAACAGCTGAAATAAACAGAATGG 59.653 40.000 23.35 0.00 43.62 3.16
3458 3897 4.336993 AGTCGCTATCATCTTCGTCTTCTT 59.663 41.667 0.00 0.00 0.00 2.52
3513 3952 6.820656 GGATCAAAATGATATATCACCGAGCT 59.179 38.462 17.60 0.00 37.20 4.09
3522 3961 7.719193 TGTTGTCCGTGGATCAAAATGATATAT 59.281 33.333 0.00 0.00 37.20 0.86
3523 3962 7.051000 TGTTGTCCGTGGATCAAAATGATATA 58.949 34.615 0.00 0.00 37.20 0.86
3566 4005 5.296780 CACACACAGACAACCAAATAAGACT 59.703 40.000 0.00 0.00 0.00 3.24
3591 4030 7.543520 CCTCATTAAAACAGCTTCCAGATTTTC 59.456 37.037 0.00 0.00 0.00 2.29
3613 4052 8.195436 CCGAGACAAAGTTTATATAGAACCTCA 58.805 37.037 0.00 0.00 0.00 3.86
3622 4061 7.822822 AGCAAGTTACCGAGACAAAGTTTATAT 59.177 33.333 0.00 0.00 0.00 0.86
3635 4074 1.324736 GAATCGCAGCAAGTTACCGAG 59.675 52.381 0.00 0.00 0.00 4.63
3638 4077 1.201921 CGTGAATCGCAGCAAGTTACC 60.202 52.381 0.00 0.00 0.00 2.85
3646 4085 4.166011 GGCCACGTGAATCGCAGC 62.166 66.667 19.30 9.75 44.19 5.25
3647 4086 3.853330 CGGCCACGTGAATCGCAG 61.853 66.667 19.30 8.74 44.19 5.18
3650 4089 3.487202 CACCGGCCACGTGAATCG 61.487 66.667 19.30 16.49 46.00 3.34
3651 4090 2.510064 TACCACCGGCCACGTGAATC 62.510 60.000 19.30 5.48 38.78 2.52
3652 4091 2.114488 TTACCACCGGCCACGTGAAT 62.114 55.000 19.30 10.56 38.78 2.57
3653 4092 2.114488 ATTACCACCGGCCACGTGAA 62.114 55.000 19.30 8.58 38.78 3.18
3654 4093 2.585341 ATTACCACCGGCCACGTGA 61.585 57.895 19.30 2.47 38.78 4.35
3655 4094 2.046700 ATTACCACCGGCCACGTG 60.047 61.111 9.08 9.08 38.78 4.49
3656 4095 1.543065 TACATTACCACCGGCCACGT 61.543 55.000 0.00 0.00 38.78 4.49
3657 4096 0.179067 ATACATTACCACCGGCCACG 60.179 55.000 0.00 0.00 40.55 4.94
3658 4097 1.140252 AGATACATTACCACCGGCCAC 59.860 52.381 0.00 0.00 0.00 5.01
3659 4098 1.502690 AGATACATTACCACCGGCCA 58.497 50.000 0.00 0.00 0.00 5.36
3660 4099 2.218603 CAAGATACATTACCACCGGCC 58.781 52.381 0.00 0.00 0.00 6.13
3661 4100 2.218603 CCAAGATACATTACCACCGGC 58.781 52.381 0.00 0.00 0.00 6.13
3662 4101 3.202906 CACCAAGATACATTACCACCGG 58.797 50.000 0.00 0.00 0.00 5.28
3663 4102 3.869065 ACACCAAGATACATTACCACCG 58.131 45.455 0.00 0.00 0.00 4.94
3718 4171 2.094700 TCTCCACTGACGAATTTCTCCG 60.095 50.000 0.00 0.00 0.00 4.63
3722 4175 6.428385 AAATCATCTCCACTGACGAATTTC 57.572 37.500 0.00 0.00 0.00 2.17
3783 4240 9.495754 GAAATTATGTGCAGTAGAGACAAAATC 57.504 33.333 0.00 0.00 0.00 2.17
3794 4251 8.846943 TTTCTCTTCAGAAATTATGTGCAGTA 57.153 30.769 0.00 0.00 42.66 2.74
3821 4278 6.430000 AGACGTGTAGCATTGTCCTTTTTATT 59.570 34.615 0.00 0.00 31.75 1.40
3823 4280 5.178623 CAGACGTGTAGCATTGTCCTTTTTA 59.821 40.000 0.00 0.00 31.75 1.52
3825 4282 3.498397 CAGACGTGTAGCATTGTCCTTTT 59.502 43.478 0.00 0.00 31.75 2.27
3828 4285 1.673033 GCAGACGTGTAGCATTGTCCT 60.673 52.381 0.00 0.00 31.75 3.85
3829 4286 0.721718 GCAGACGTGTAGCATTGTCC 59.278 55.000 0.00 0.00 31.75 4.02
3831 4288 1.014044 CGGCAGACGTGTAGCATTGT 61.014 55.000 0.00 0.00 37.93 2.71
3832 4289 1.695893 CCGGCAGACGTGTAGCATTG 61.696 60.000 0.00 0.00 42.24 2.82
3833 4290 1.447838 CCGGCAGACGTGTAGCATT 60.448 57.895 0.00 0.00 42.24 3.56
3834 4291 1.676678 ATCCGGCAGACGTGTAGCAT 61.677 55.000 0.00 0.00 42.24 3.79
3836 4293 1.878522 CATCCGGCAGACGTGTAGC 60.879 63.158 0.00 0.00 42.24 3.58
3839 4296 0.821517 TTATCATCCGGCAGACGTGT 59.178 50.000 0.00 0.00 42.24 4.49
3841 4298 2.872245 CAATTTATCATCCGGCAGACGT 59.128 45.455 0.00 0.00 42.24 4.34
3842 4299 3.130633 TCAATTTATCATCCGGCAGACG 58.869 45.455 0.00 0.00 43.80 4.18
3844 4301 6.295249 TGTAATCAATTTATCATCCGGCAGA 58.705 36.000 0.00 0.00 0.00 4.26
3845 4302 6.558771 TGTAATCAATTTATCATCCGGCAG 57.441 37.500 0.00 0.00 0.00 4.85
3846 4303 6.128309 CGATGTAATCAATTTATCATCCGGCA 60.128 38.462 0.00 0.00 45.97 5.69
3848 4305 7.595311 TCGATGTAATCAATTTATCATCCGG 57.405 36.000 0.00 0.00 45.97 5.14
3849 4306 8.052490 CGATCGATGTAATCAATTTATCATCCG 58.948 37.037 10.26 0.00 45.97 4.18
3850 4307 7.848051 GCGATCGATGTAATCAATTTATCATCC 59.152 37.037 21.57 0.00 45.97 3.51
3851 4308 7.848051 GGCGATCGATGTAATCAATTTATCATC 59.152 37.037 21.57 0.00 45.97 2.92
3853 4310 6.873605 AGGCGATCGATGTAATCAATTTATCA 59.126 34.615 21.57 0.00 45.97 2.15
3855 4312 7.295952 GAGGCGATCGATGTAATCAATTTAT 57.704 36.000 21.57 0.00 45.97 1.40
3856 4313 6.706055 GAGGCGATCGATGTAATCAATTTA 57.294 37.500 21.57 0.00 45.97 1.40
3857 4314 5.597813 GAGGCGATCGATGTAATCAATTT 57.402 39.130 21.57 0.00 45.97 1.82
3876 4333 3.288290 ATCCGACGGCTAGCGAGG 61.288 66.667 9.66 9.18 0.00 4.63
3877 4334 2.050895 CATCCGACGGCTAGCGAG 60.051 66.667 9.66 7.98 0.00 5.03
3878 4335 4.266070 GCATCCGACGGCTAGCGA 62.266 66.667 9.66 0.00 0.00 4.93
3879 4336 4.271816 AGCATCCGACGGCTAGCG 62.272 66.667 9.66 6.83 38.90 4.26
3880 4337 2.659897 CAGCATCCGACGGCTAGC 60.660 66.667 9.66 6.04 38.56 3.42
3881 4338 2.659897 GCAGCATCCGACGGCTAG 60.660 66.667 9.66 2.14 38.56 3.42
3882 4339 4.221422 GGCAGCATCCGACGGCTA 62.221 66.667 9.66 0.00 38.56 3.93
3890 4347 3.190878 CTGTTTCGGGCAGCATCC 58.809 61.111 0.00 0.00 0.00 3.51
3895 4352 2.328099 GGACAGCTGTTTCGGGCAG 61.328 63.158 22.65 0.00 37.06 4.85
3896 4353 2.281484 GGACAGCTGTTTCGGGCA 60.281 61.111 22.65 0.00 0.00 5.36
3899 4356 0.108615 AGATCGGACAGCTGTTTCGG 60.109 55.000 29.75 19.70 0.00 4.30
3900 4357 2.186076 GTAGATCGGACAGCTGTTTCG 58.814 52.381 26.90 26.90 0.00 3.46
3902 4359 1.135083 CGGTAGATCGGACAGCTGTTT 60.135 52.381 22.65 6.53 0.00 2.83
3903 4360 0.456221 CGGTAGATCGGACAGCTGTT 59.544 55.000 22.65 4.27 0.00 3.16
3904 4361 2.005960 GCGGTAGATCGGACAGCTGT 62.006 60.000 21.88 21.88 35.45 4.40
3906 4363 2.491022 GGCGGTAGATCGGACAGCT 61.491 63.158 19.49 0.00 38.00 4.24
3909 4366 0.681887 TTGAGGCGGTAGATCGGACA 60.682 55.000 3.62 0.00 0.00 4.02
3910 4367 0.248949 GTTGAGGCGGTAGATCGGAC 60.249 60.000 0.00 0.00 0.00 4.79
3911 4368 1.389609 GGTTGAGGCGGTAGATCGGA 61.390 60.000 0.00 0.00 0.00 4.55
3913 4370 0.174845 TTGGTTGAGGCGGTAGATCG 59.825 55.000 0.00 0.00 0.00 3.69
3916 4373 0.320374 CAGTTGGTTGAGGCGGTAGA 59.680 55.000 0.00 0.00 0.00 2.59
3917 4374 0.320374 TCAGTTGGTTGAGGCGGTAG 59.680 55.000 0.00 0.00 0.00 3.18
3918 4375 0.320374 CTCAGTTGGTTGAGGCGGTA 59.680 55.000 0.00 0.00 40.69 4.02
3919 4376 1.071471 CTCAGTTGGTTGAGGCGGT 59.929 57.895 0.00 0.00 40.69 5.68
3920 4377 3.972227 CTCAGTTGGTTGAGGCGG 58.028 61.111 0.00 0.00 40.69 6.13
3924 4381 0.111253 AAGCCCCTCAGTTGGTTGAG 59.889 55.000 0.00 0.00 43.35 3.02
3925 4382 0.555769 AAAGCCCCTCAGTTGGTTGA 59.444 50.000 0.00 0.00 0.00 3.18
3926 4383 1.886542 GTAAAGCCCCTCAGTTGGTTG 59.113 52.381 0.00 0.00 0.00 3.77
3928 4385 1.145571 TGTAAAGCCCCTCAGTTGGT 58.854 50.000 0.00 0.00 0.00 3.67
3929 4386 1.886542 GTTGTAAAGCCCCTCAGTTGG 59.113 52.381 0.00 0.00 0.00 3.77
3930 4387 2.582052 TGTTGTAAAGCCCCTCAGTTG 58.418 47.619 0.00 0.00 0.00 3.16
3931 4388 3.222603 CTTGTTGTAAAGCCCCTCAGTT 58.777 45.455 0.00 0.00 0.00 3.16
3932 4389 2.489073 CCTTGTTGTAAAGCCCCTCAGT 60.489 50.000 0.00 0.00 0.00 3.41
3933 4390 2.162681 CCTTGTTGTAAAGCCCCTCAG 58.837 52.381 0.00 0.00 0.00 3.35
3934 4391 1.777878 TCCTTGTTGTAAAGCCCCTCA 59.222 47.619 0.00 0.00 0.00 3.86
3935 4392 2.160205 GTCCTTGTTGTAAAGCCCCTC 58.840 52.381 0.00 0.00 0.00 4.30
3936 4393 1.203013 GGTCCTTGTTGTAAAGCCCCT 60.203 52.381 0.00 0.00 0.00 4.79
3937 4394 1.203013 AGGTCCTTGTTGTAAAGCCCC 60.203 52.381 0.00 0.00 0.00 5.80
3939 4396 3.643159 CAAGGTCCTTGTTGTAAAGCC 57.357 47.619 21.76 0.00 36.79 4.35
3949 4406 1.756538 ACCTTTGCAACAAGGTCCTTG 59.243 47.619 27.09 27.09 45.80 3.61
3950 4407 2.159179 ACCTTTGCAACAAGGTCCTT 57.841 45.000 15.74 0.00 45.80 3.36
3951 4408 3.924576 ACCTTTGCAACAAGGTCCT 57.075 47.368 15.74 0.00 45.80 3.85
3955 4412 0.310854 GACGGACCTTTGCAACAAGG 59.689 55.000 14.48 14.48 41.87 3.61
3957 4414 1.403679 CTTGACGGACCTTTGCAACAA 59.596 47.619 0.00 0.00 0.00 2.83
3958 4415 1.021202 CTTGACGGACCTTTGCAACA 58.979 50.000 0.00 0.00 0.00 3.33
3960 4417 1.305201 GTCTTGACGGACCTTTGCAA 58.695 50.000 0.00 0.00 0.00 4.08
3961 4418 0.179234 TGTCTTGACGGACCTTTGCA 59.821 50.000 0.00 0.00 35.54 4.08
3963 4420 2.031683 GTGTTGTCTTGACGGACCTTTG 59.968 50.000 0.00 0.00 35.54 2.77
3964 4421 2.093128 AGTGTTGTCTTGACGGACCTTT 60.093 45.455 0.00 0.00 35.54 3.11
3965 4422 1.485066 AGTGTTGTCTTGACGGACCTT 59.515 47.619 0.00 0.00 35.54 3.50
3966 4423 1.120530 AGTGTTGTCTTGACGGACCT 58.879 50.000 0.00 0.00 35.54 3.85
3967 4424 1.217882 CAGTGTTGTCTTGACGGACC 58.782 55.000 0.00 0.00 35.54 4.46
3970 4427 1.330521 CCAACAGTGTTGTCTTGACGG 59.669 52.381 29.28 11.90 36.23 4.79
3971 4428 1.268032 GCCAACAGTGTTGTCTTGACG 60.268 52.381 29.28 16.01 36.23 4.35
3972 4429 1.065551 GGCCAACAGTGTTGTCTTGAC 59.934 52.381 29.28 15.86 36.23 3.18
3973 4430 1.388547 GGCCAACAGTGTTGTCTTGA 58.611 50.000 29.28 0.00 36.23 3.02
3974 4431 0.385390 GGGCCAACAGTGTTGTCTTG 59.615 55.000 29.28 17.58 36.23 3.02
3976 4433 1.525995 CGGGCCAACAGTGTTGTCT 60.526 57.895 29.28 0.00 36.23 3.41
3978 4435 3.216292 GCGGGCCAACAGTGTTGT 61.216 61.111 29.28 0.00 39.87 3.32
3979 4436 3.977244 GGCGGGCCAACAGTGTTG 61.977 66.667 26.06 26.06 35.81 3.33
3980 4437 4.514585 TGGCGGGCCAACAGTGTT 62.515 61.111 10.53 1.64 44.12 3.32
3993 4450 4.764336 CAGCAACGTGCCATGGCG 62.764 66.667 30.87 20.22 46.52 5.69
3994 4451 4.424566 CCAGCAACGTGCCATGGC 62.425 66.667 30.54 30.54 46.52 4.40
3996 4453 2.256158 CACCAGCAACGTGCCATG 59.744 61.111 6.39 0.00 46.52 3.66
3997 4454 2.985282 CCACCAGCAACGTGCCAT 60.985 61.111 6.39 0.00 46.52 4.40
3998 4455 4.497984 ACCACCAGCAACGTGCCA 62.498 61.111 6.39 0.00 46.52 4.92
4004 4461 3.050275 GCTCCGACCACCAGCAAC 61.050 66.667 0.00 0.00 33.06 4.17
4005 4462 3.241530 AGCTCCGACCACCAGCAA 61.242 61.111 0.00 0.00 35.46 3.91
4006 4463 4.007644 CAGCTCCGACCACCAGCA 62.008 66.667 0.00 0.00 35.46 4.41
4008 4465 2.262915 GACAGCTCCGACCACCAG 59.737 66.667 0.00 0.00 0.00 4.00
4018 4475 4.863925 GAGGAGGCGCGACAGCTC 62.864 72.222 17.71 1.89 42.32 4.09
4047 4504 3.150335 TAGAGGCAGCTGCTCGGG 61.150 66.667 35.82 0.00 41.70 5.14
4048 4505 2.105930 GTAGAGGCAGCTGCTCGG 59.894 66.667 35.82 0.25 41.70 4.63
4049 4506 1.065600 GAGTAGAGGCAGCTGCTCG 59.934 63.158 35.82 0.70 37.76 5.03
4050 4507 1.326213 TGGAGTAGAGGCAGCTGCTC 61.326 60.000 35.82 28.40 44.00 4.26
4051 4508 1.305633 TGGAGTAGAGGCAGCTGCT 60.306 57.895 35.82 22.72 41.70 4.24
4052 4509 1.143620 CTGGAGTAGAGGCAGCTGC 59.856 63.158 30.88 30.88 41.14 5.25
4053 4510 1.143620 GCTGGAGTAGAGGCAGCTG 59.856 63.158 10.11 10.11 36.12 4.24
4054 4511 1.305633 TGCTGGAGTAGAGGCAGCT 60.306 57.895 0.00 0.00 39.41 4.24
4055 4512 1.153469 GTGCTGGAGTAGAGGCAGC 60.153 63.158 0.00 0.00 39.16 5.25
4056 4513 1.140589 CGTGCTGGAGTAGAGGCAG 59.859 63.158 0.00 0.00 35.29 4.85
4057 4514 1.304134 TCGTGCTGGAGTAGAGGCA 60.304 57.895 0.00 0.00 0.00 4.75
4058 4515 1.139947 GTCGTGCTGGAGTAGAGGC 59.860 63.158 0.00 0.00 0.00 4.70
4059 4516 1.025113 TCGTCGTGCTGGAGTAGAGG 61.025 60.000 0.00 0.00 0.00 3.69
4060 4517 0.097325 GTCGTCGTGCTGGAGTAGAG 59.903 60.000 0.00 0.00 0.00 2.43
4061 4518 1.632948 CGTCGTCGTGCTGGAGTAGA 61.633 60.000 0.00 0.00 0.00 2.59
4062 4519 1.226046 CGTCGTCGTGCTGGAGTAG 60.226 63.158 0.00 0.00 0.00 2.57
4063 4520 1.668793 TCGTCGTCGTGCTGGAGTA 60.669 57.895 1.33 0.00 38.33 2.59
4064 4521 2.976350 TCGTCGTCGTGCTGGAGT 60.976 61.111 1.33 0.00 38.33 3.85
4065 4522 2.502080 GTCGTCGTCGTGCTGGAG 60.502 66.667 1.33 0.00 38.33 3.86
4066 4523 4.379143 CGTCGTCGTCGTGCTGGA 62.379 66.667 3.67 0.00 38.33 3.86
4067 4524 4.379143 TCGTCGTCGTCGTGCTGG 62.379 66.667 11.41 0.00 38.33 4.85
4068 4525 2.865603 CTCGTCGTCGTCGTGCTG 60.866 66.667 11.41 0.00 38.33 4.41
4073 4530 2.020287 GAGAGCTCGTCGTCGTCG 59.980 66.667 8.37 5.50 38.33 5.12
4075 4532 1.299562 ACATGAGAGCTCGTCGTCGT 61.300 55.000 8.37 0.00 38.33 4.34
4085 4542 1.162800 GGAATGCCCGACATGAGAGC 61.163 60.000 0.00 0.00 39.60 4.09
4087 4544 0.911769 AAGGAATGCCCGACATGAGA 59.088 50.000 0.00 0.00 39.60 3.27
4088 4545 1.402968 CAAAGGAATGCCCGACATGAG 59.597 52.381 0.00 0.00 39.60 2.90
4097 6515 1.478105 AGAAATCGCCAAAGGAATGCC 59.522 47.619 0.00 0.00 0.00 4.40
4100 6518 2.170166 TGCAGAAATCGCCAAAGGAAT 58.830 42.857 0.00 0.00 0.00 3.01
4102 6520 1.269448 GTTGCAGAAATCGCCAAAGGA 59.731 47.619 0.00 0.00 0.00 3.36
4108 6526 1.730446 GCTTCAGTTGCAGAAATCGCC 60.730 52.381 0.00 0.00 0.00 5.54
4109 6527 1.198637 AGCTTCAGTTGCAGAAATCGC 59.801 47.619 0.00 0.00 0.00 4.58
4110 6528 4.093998 ACATAGCTTCAGTTGCAGAAATCG 59.906 41.667 0.00 0.00 0.00 3.34
4111 6529 5.557891 ACATAGCTTCAGTTGCAGAAATC 57.442 39.130 0.00 0.00 0.00 2.17
4114 6532 5.049198 CAGAAACATAGCTTCAGTTGCAGAA 60.049 40.000 0.00 0.00 0.00 3.02
4117 6535 4.388485 TCAGAAACATAGCTTCAGTTGCA 58.612 39.130 0.00 0.00 0.00 4.08
4118 6536 5.362556 TTCAGAAACATAGCTTCAGTTGC 57.637 39.130 0.00 0.00 0.00 4.17
4119 6537 6.728200 TGTTTCAGAAACATAGCTTCAGTTG 58.272 36.000 22.53 0.00 45.79 3.16
4120 6538 6.942532 TGTTTCAGAAACATAGCTTCAGTT 57.057 33.333 22.53 0.00 45.79 3.16
4132 6550 2.286184 ACACGACGCATGTTTCAGAAAC 60.286 45.455 17.85 17.85 41.73 2.78
4133 6551 1.937223 ACACGACGCATGTTTCAGAAA 59.063 42.857 0.00 0.00 0.00 2.52
4134 6552 1.577468 ACACGACGCATGTTTCAGAA 58.423 45.000 0.00 0.00 0.00 3.02
4135 6553 1.260297 CAACACGACGCATGTTTCAGA 59.740 47.619 1.44 0.00 38.22 3.27
4137 6555 0.316607 GCAACACGACGCATGTTTCA 60.317 50.000 1.44 0.00 38.22 2.69
4139 6557 0.099613 TTGCAACACGACGCATGTTT 59.900 45.000 0.00 0.00 38.22 2.83
4140 6558 0.310543 ATTGCAACACGACGCATGTT 59.689 45.000 0.00 0.00 40.95 2.71
4142 6560 1.667349 GCATTGCAACACGACGCATG 61.667 55.000 0.00 0.00 38.10 4.06
4143 6561 1.442520 GCATTGCAACACGACGCAT 60.443 52.632 0.00 0.00 38.10 4.73
4144 6562 2.051435 GCATTGCAACACGACGCA 60.051 55.556 0.00 0.00 36.05 5.24
4145 6563 0.110419 TAAGCATTGCAACACGACGC 60.110 50.000 11.91 0.00 0.00 5.19
4147 6565 2.480419 AGACTAAGCATTGCAACACGAC 59.520 45.455 11.91 0.00 0.00 4.34
4148 6566 2.736721 GAGACTAAGCATTGCAACACGA 59.263 45.455 11.91 0.00 0.00 4.35
4149 6567 2.472886 CGAGACTAAGCATTGCAACACG 60.473 50.000 11.91 0.00 0.00 4.49
4151 6569 1.464608 GCGAGACTAAGCATTGCAACA 59.535 47.619 11.91 0.00 0.00 3.33
4154 6572 3.531073 TGCGAGACTAAGCATTGCA 57.469 47.368 11.91 0.00 38.59 4.08
4160 6578 2.783828 TAGAGCATGCGAGACTAAGC 57.216 50.000 13.01 0.00 0.00 3.09
4161 6579 3.039405 CGTTAGAGCATGCGAGACTAAG 58.961 50.000 20.65 14.48 0.00 2.18
4163 6581 1.268589 GCGTTAGAGCATGCGAGACTA 60.269 52.381 13.01 11.69 37.05 2.59
4165 6583 1.920762 GCGTTAGAGCATGCGAGAC 59.079 57.895 13.01 9.04 37.05 3.36
4166 6584 4.402192 GCGTTAGAGCATGCGAGA 57.598 55.556 13.01 0.00 37.05 4.04
4171 6589 0.041839 GCATTCCGCGTTAGAGCATG 60.042 55.000 4.92 0.00 36.85 4.06
4172 6590 2.311294 GCATTCCGCGTTAGAGCAT 58.689 52.632 4.92 0.00 36.85 3.79
4189 6607 1.780025 GCATAAAGCGCTGGAGGAGC 61.780 60.000 12.58 7.42 45.20 4.70
4190 6608 2.315246 GCATAAAGCGCTGGAGGAG 58.685 57.895 12.58 0.00 0.00 3.69
4191 6609 4.540153 GCATAAAGCGCTGGAGGA 57.460 55.556 12.58 0.00 0.00 3.71
4201 6619 1.608590 CATAGCCCCGGTTGCATAAAG 59.391 52.381 14.82 0.00 0.00 1.85
4202 6620 1.064314 ACATAGCCCCGGTTGCATAAA 60.064 47.619 14.82 0.00 0.00 1.40
4204 6622 0.548989 AACATAGCCCCGGTTGCATA 59.451 50.000 14.82 5.67 0.00 3.14
4207 6625 0.606096 AAAAACATAGCCCCGGTTGC 59.394 50.000 0.00 2.22 0.00 4.17
4208 6626 1.889829 TCAAAAACATAGCCCCGGTTG 59.110 47.619 0.00 0.00 0.00 3.77
4209 6627 2.296073 TCAAAAACATAGCCCCGGTT 57.704 45.000 0.00 0.00 0.00 4.44
4210 6628 2.296073 TTCAAAAACATAGCCCCGGT 57.704 45.000 0.00 0.00 0.00 5.28
4211 6629 2.297597 TGTTTCAAAAACATAGCCCCGG 59.702 45.455 0.00 0.00 0.00 5.73
4212 6630 3.651803 TGTTTCAAAAACATAGCCCCG 57.348 42.857 1.27 0.00 0.00 5.73
4213 6631 4.988540 GTCTTGTTTCAAAAACATAGCCCC 59.011 41.667 6.12 0.00 0.00 5.80
4214 6632 4.988540 GGTCTTGTTTCAAAAACATAGCCC 59.011 41.667 6.12 3.58 0.00 5.19
4215 6633 4.988540 GGGTCTTGTTTCAAAAACATAGCC 59.011 41.667 15.09 15.09 31.54 3.93
4217 6635 9.927668 AATATGGGTCTTGTTTCAAAAACATAG 57.072 29.630 6.12 7.08 0.00 2.23
4218 6636 9.703892 CAATATGGGTCTTGTTTCAAAAACATA 57.296 29.630 6.12 0.00 0.00 2.29
4219 6637 7.173047 GCAATATGGGTCTTGTTTCAAAAACAT 59.827 33.333 6.12 0.00 0.00 2.71
4220 6638 6.481644 GCAATATGGGTCTTGTTTCAAAAACA 59.518 34.615 1.27 1.27 0.00 2.83
4221 6639 6.481644 TGCAATATGGGTCTTGTTTCAAAAAC 59.518 34.615 0.00 0.00 0.00 2.43
4222 6640 6.586344 TGCAATATGGGTCTTGTTTCAAAAA 58.414 32.000 0.00 0.00 0.00 1.94
4223 6641 6.041409 TCTGCAATATGGGTCTTGTTTCAAAA 59.959 34.615 0.00 0.00 0.00 2.44
4224 6642 5.538053 TCTGCAATATGGGTCTTGTTTCAAA 59.462 36.000 0.00 0.00 0.00 2.69
4225 6643 5.076182 TCTGCAATATGGGTCTTGTTTCAA 58.924 37.500 0.00 0.00 0.00 2.69
4226 6644 4.661222 TCTGCAATATGGGTCTTGTTTCA 58.339 39.130 0.00 0.00 0.00 2.69
4227 6645 5.415701 TCTTCTGCAATATGGGTCTTGTTTC 59.584 40.000 0.00 0.00 0.00 2.78
4228 6646 5.324409 TCTTCTGCAATATGGGTCTTGTTT 58.676 37.500 0.00 0.00 0.00 2.83
4229 6647 4.922206 TCTTCTGCAATATGGGTCTTGTT 58.078 39.130 0.00 0.00 0.00 2.83
4230 6648 4.574674 TCTTCTGCAATATGGGTCTTGT 57.425 40.909 0.00 0.00 0.00 3.16
4231 6649 5.902613 TTTCTTCTGCAATATGGGTCTTG 57.097 39.130 0.00 0.00 0.00 3.02
4232 6650 6.916360 TTTTTCTTCTGCAATATGGGTCTT 57.084 33.333 0.00 0.00 0.00 3.01
4274 6692 8.066612 AGGTCATGTTTCAGAAAGAAGAAAAA 57.933 30.769 0.00 0.00 37.57 1.94
4275 6693 7.645058 AGGTCATGTTTCAGAAAGAAGAAAA 57.355 32.000 0.00 0.00 37.57 2.29
4276 6694 7.645058 AAGGTCATGTTTCAGAAAGAAGAAA 57.355 32.000 0.00 0.00 37.57 2.52
4277 6695 7.122650 ACAAAGGTCATGTTTCAGAAAGAAGAA 59.877 33.333 0.00 0.00 37.57 2.52
4278 6696 6.603201 ACAAAGGTCATGTTTCAGAAAGAAGA 59.397 34.615 0.00 0.00 37.57 2.87
4279 6697 6.799512 ACAAAGGTCATGTTTCAGAAAGAAG 58.200 36.000 0.00 0.00 37.57 2.85
4280 6698 6.773976 ACAAAGGTCATGTTTCAGAAAGAA 57.226 33.333 0.00 0.00 0.00 2.52
4281 6699 6.183360 GGAACAAAGGTCATGTTTCAGAAAGA 60.183 38.462 0.00 0.00 40.90 2.52
4282 6700 5.979517 GGAACAAAGGTCATGTTTCAGAAAG 59.020 40.000 0.00 0.00 40.90 2.62
4283 6701 5.420421 TGGAACAAAGGTCATGTTTCAGAAA 59.580 36.000 0.00 0.00 40.48 2.52
4284 6702 4.952957 TGGAACAAAGGTCATGTTTCAGAA 59.047 37.500 0.00 0.00 40.48 3.02
4285 6703 4.531854 TGGAACAAAGGTCATGTTTCAGA 58.468 39.130 0.00 0.00 40.48 3.27
4286 6704 4.916983 TGGAACAAAGGTCATGTTTCAG 57.083 40.909 0.00 0.00 40.48 3.02
4287 6705 3.636300 CCTGGAACAAAGGTCATGTTTCA 59.364 43.478 0.89 0.89 42.53 2.69
4288 6706 3.888930 TCCTGGAACAAAGGTCATGTTTC 59.111 43.478 0.00 0.00 40.90 2.78
4289 6707 3.636764 GTCCTGGAACAAAGGTCATGTTT 59.363 43.478 0.00 0.00 40.90 2.83
4290 6708 3.222603 GTCCTGGAACAAAGGTCATGTT 58.777 45.455 0.00 0.00 43.37 2.71
4291 6709 2.174639 TGTCCTGGAACAAAGGTCATGT 59.825 45.455 0.00 0.00 38.70 3.21
4292 6710 2.862541 TGTCCTGGAACAAAGGTCATG 58.137 47.619 0.00 0.00 38.70 3.07
4293 6711 3.814504 ATGTCCTGGAACAAAGGTCAT 57.185 42.857 0.00 0.00 38.32 3.06
4294 6712 3.138283 AGAATGTCCTGGAACAAAGGTCA 59.862 43.478 0.00 0.00 38.70 4.02
4295 6713 3.503748 CAGAATGTCCTGGAACAAAGGTC 59.496 47.826 0.00 0.00 38.70 3.85
4296 6714 3.138283 TCAGAATGTCCTGGAACAAAGGT 59.862 43.478 0.00 0.00 35.37 3.50
4297 6715 3.754965 TCAGAATGTCCTGGAACAAAGG 58.245 45.455 0.00 0.00 35.37 3.11
4298 6716 5.523369 GTTTCAGAATGTCCTGGAACAAAG 58.477 41.667 0.00 0.00 46.77 2.77
4299 6717 5.514274 GTTTCAGAATGTCCTGGAACAAA 57.486 39.130 0.00 0.00 46.77 2.83
4303 6721 6.213397 TGATCTAGTTTCAGAATGTCCTGGAA 59.787 38.462 0.00 0.00 37.40 3.53
4304 6722 5.721480 TGATCTAGTTTCAGAATGTCCTGGA 59.279 40.000 0.00 0.00 37.40 3.86
4305 6723 5.982356 TGATCTAGTTTCAGAATGTCCTGG 58.018 41.667 0.00 0.00 37.40 4.45
4306 6724 7.046652 ACATGATCTAGTTTCAGAATGTCCTG 58.953 38.462 0.00 0.00 37.40 3.86
4307 6725 7.192852 ACATGATCTAGTTTCAGAATGTCCT 57.807 36.000 0.00 0.00 37.40 3.85
4308 6726 7.550551 TCAACATGATCTAGTTTCAGAATGTCC 59.449 37.037 0.00 0.00 37.40 4.02
4309 6727 8.484641 TCAACATGATCTAGTTTCAGAATGTC 57.515 34.615 0.00 0.00 37.40 3.06
4310 6728 8.890718 CATCAACATGATCTAGTTTCAGAATGT 58.109 33.333 0.00 2.45 34.28 2.71
4311 6729 9.106070 TCATCAACATGATCTAGTTTCAGAATG 57.894 33.333 0.00 1.98 34.28 2.67
4312 6730 9.676861 TTCATCAACATGATCTAGTTTCAGAAT 57.323 29.630 0.00 0.00 38.89 2.40
4313 6731 9.506018 TTTCATCAACATGATCTAGTTTCAGAA 57.494 29.630 0.00 0.71 38.89 3.02
4314 6732 9.506018 TTTTCATCAACATGATCTAGTTTCAGA 57.494 29.630 0.00 0.00 38.89 3.27
4339 6757 7.936496 AAAATGGTTTGGTGATGAAGTTTTT 57.064 28.000 0.00 0.00 0.00 1.94
4340 6758 7.936496 AAAAATGGTTTGGTGATGAAGTTTT 57.064 28.000 0.00 0.00 0.00 2.43
4366 6784 6.873997 TGTGTCTAGTCTTGTTTCAGAAAGA 58.126 36.000 0.00 0.00 0.00 2.52
4373 6791 5.734855 TGCTTTGTGTCTAGTCTTGTTTC 57.265 39.130 0.00 0.00 0.00 2.78
4374 6792 6.699575 ATTGCTTTGTGTCTAGTCTTGTTT 57.300 33.333 0.00 0.00 0.00 2.83
4375 6793 6.765989 TGTATTGCTTTGTGTCTAGTCTTGTT 59.234 34.615 0.00 0.00 0.00 2.83
4376 6794 6.202954 GTGTATTGCTTTGTGTCTAGTCTTGT 59.797 38.462 0.00 0.00 0.00 3.16
4377 6795 6.347725 GGTGTATTGCTTTGTGTCTAGTCTTG 60.348 42.308 0.00 0.00 0.00 3.02
4378 6796 5.701290 GGTGTATTGCTTTGTGTCTAGTCTT 59.299 40.000 0.00 0.00 0.00 3.01
4380 6798 5.238583 AGGTGTATTGCTTTGTGTCTAGTC 58.761 41.667 0.00 0.00 0.00 2.59
4381 6799 5.228945 AGGTGTATTGCTTTGTGTCTAGT 57.771 39.130 0.00 0.00 0.00 2.57
4382 6800 5.931532 CAAGGTGTATTGCTTTGTGTCTAG 58.068 41.667 0.00 0.00 0.00 2.43
4383 6801 5.940192 CAAGGTGTATTGCTTTGTGTCTA 57.060 39.130 0.00 0.00 0.00 2.59
4384 6802 4.836125 CAAGGTGTATTGCTTTGTGTCT 57.164 40.909 0.00 0.00 0.00 3.41
4405 6823 2.558359 AGTCACCCTAATTGCACAAAGC 59.442 45.455 0.00 0.00 45.96 3.51
4406 6824 3.820467 TGAGTCACCCTAATTGCACAAAG 59.180 43.478 0.00 0.00 0.00 2.77
4407 6825 3.826524 TGAGTCACCCTAATTGCACAAA 58.173 40.909 0.00 0.00 0.00 2.83
4413 7984 6.573664 TGTTGAATTGAGTCACCCTAATTG 57.426 37.500 0.00 0.00 0.00 2.32
4414 7985 7.781324 AATGTTGAATTGAGTCACCCTAATT 57.219 32.000 0.00 0.00 0.00 1.40
4459 8030 2.206750 TCACCGCCATATAAAACGAGC 58.793 47.619 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.