Multiple sequence alignment - TraesCS2A01G123600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G123600 chr2A 100.000 3515 0 0 1 3515 72952615 72956129 0.000000e+00 6492
1 TraesCS2A01G123600 chr2A 99.038 208 2 0 2914 3121 507382765 507382558 1.190000e-99 374
2 TraesCS2A01G123600 chr6A 98.963 2797 28 1 719 3515 175630095 175632890 0.000000e+00 5003
3 TraesCS2A01G123600 chr1A 98.892 2798 31 0 718 3515 582543180 582540383 0.000000e+00 4996
4 TraesCS2A01G123600 chr7A 98.784 2797 32 2 719 3515 652482591 652479797 0.000000e+00 4975
5 TraesCS2A01G123600 chr7A 97.511 2812 55 3 718 3515 299415303 299418113 0.000000e+00 4791
6 TraesCS2A01G123600 chr7A 98.684 304 4 0 718 1021 652474971 652475274 1.110000e-149 540
7 TraesCS2A01G123600 chr4A 98.713 2797 36 0 719 3515 612039984 612042780 0.000000e+00 4966
8 TraesCS2A01G123600 chr4A 80.814 172 26 5 493 659 620256974 620257143 1.020000e-25 128
9 TraesCS2A01G123600 chr6B 98.607 2800 38 1 717 3515 707589595 707592394 0.000000e+00 4953
10 TraesCS2A01G123600 chr6B 98.606 2797 30 4 719 3515 536839746 536836959 0.000000e+00 4940
11 TraesCS2A01G123600 chr3B 98.105 2797 31 2 719 3515 344147567 344144793 0.000000e+00 4852
12 TraesCS2A01G123600 chr2B 98.506 2209 20 3 719 2926 183540041 183542237 0.000000e+00 3884
13 TraesCS2A01G123600 chr2B 92.739 303 17 5 114 415 111418754 111419052 1.940000e-117 433
14 TraesCS2A01G123600 chr2B 83.333 120 10 2 7 117 111418081 111418199 6.210000e-18 102
15 TraesCS2A01G123600 chr2D 88.125 160 13 4 40 196 73463450 73463606 5.990000e-43 185
16 TraesCS2A01G123600 chr2D 84.459 148 14 5 331 478 73476934 73477072 1.700000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G123600 chr2A 72952615 72956129 3514 False 6492.0 6492 100.000 1 3515 1 chr2A.!!$F1 3514
1 TraesCS2A01G123600 chr6A 175630095 175632890 2795 False 5003.0 5003 98.963 719 3515 1 chr6A.!!$F1 2796
2 TraesCS2A01G123600 chr1A 582540383 582543180 2797 True 4996.0 4996 98.892 718 3515 1 chr1A.!!$R1 2797
3 TraesCS2A01G123600 chr7A 652479797 652482591 2794 True 4975.0 4975 98.784 719 3515 1 chr7A.!!$R1 2796
4 TraesCS2A01G123600 chr7A 299415303 299418113 2810 False 4791.0 4791 97.511 718 3515 1 chr7A.!!$F1 2797
5 TraesCS2A01G123600 chr4A 612039984 612042780 2796 False 4966.0 4966 98.713 719 3515 1 chr4A.!!$F1 2796
6 TraesCS2A01G123600 chr6B 707589595 707592394 2799 False 4953.0 4953 98.607 717 3515 1 chr6B.!!$F1 2798
7 TraesCS2A01G123600 chr6B 536836959 536839746 2787 True 4940.0 4940 98.606 719 3515 1 chr6B.!!$R1 2796
8 TraesCS2A01G123600 chr3B 344144793 344147567 2774 True 4852.0 4852 98.105 719 3515 1 chr3B.!!$R1 2796
9 TraesCS2A01G123600 chr2B 183540041 183542237 2196 False 3884.0 3884 98.506 719 2926 1 chr2B.!!$F1 2207
10 TraesCS2A01G123600 chr2B 111418081 111419052 971 False 267.5 433 88.036 7 415 2 chr2B.!!$F2 408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 352 0.029300 CAGTTTGGTTGTCGCTGGTG 59.971 55.0 0.00 0.00 0.00 4.17 F
490 500 0.042731 AAGTGCAGACCTAGGGGCTA 59.957 55.0 14.81 2.57 35.63 3.93 F
491 501 0.266152 AGTGCAGACCTAGGGGCTAT 59.734 55.0 14.81 4.19 35.63 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 2429 0.741927 GCATTCTGCATTGTTGGGGC 60.742 55.000 0.00 0.0 44.26 5.80 R
1903 2552 2.170607 GTCATAGTTGGCCTCCAGCTTA 59.829 50.000 3.32 0.0 42.30 3.09 R
2524 3173 7.060748 GCATAACTACTACATACATACACAGCG 59.939 40.741 0.00 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 63 3.621715 CCACGGTCTAACAAAAGCTATCC 59.378 47.826 0.00 0.00 0.00 2.59
54 64 4.250464 CACGGTCTAACAAAAGCTATCCA 58.750 43.478 0.00 0.00 0.00 3.41
55 65 4.092968 CACGGTCTAACAAAAGCTATCCAC 59.907 45.833 0.00 0.00 0.00 4.02
56 66 4.020485 ACGGTCTAACAAAAGCTATCCACT 60.020 41.667 0.00 0.00 0.00 4.00
64 74 9.313118 CTAACAAAAGCTATCCACTTTGTTTTT 57.687 29.630 22.75 8.10 37.42 1.94
80 90 5.349824 TGTTTTTGAACTTTGTGGCAAAC 57.650 34.783 0.00 0.00 30.77 2.93
92 102 7.102993 ACTTTGTGGCAAACTTTATTGAACTT 58.897 30.769 0.00 0.00 31.84 2.66
127 137 9.372369 GTTATTACATCTCTAACAAGTTCAGCT 57.628 33.333 0.00 0.00 0.00 4.24
131 141 7.233389 ACATCTCTAACAAGTTCAGCTAAGA 57.767 36.000 0.00 0.00 0.00 2.10
132 142 7.319646 ACATCTCTAACAAGTTCAGCTAAGAG 58.680 38.462 0.00 3.06 0.00 2.85
135 145 7.952671 TCTCTAACAAGTTCAGCTAAGAGAAA 58.047 34.615 7.89 0.00 36.28 2.52
136 146 8.421784 TCTCTAACAAGTTCAGCTAAGAGAAAA 58.578 33.333 7.89 0.00 36.28 2.29
137 147 9.213799 CTCTAACAAGTTCAGCTAAGAGAAAAT 57.786 33.333 0.00 0.00 32.76 1.82
138 148 9.209175 TCTAACAAGTTCAGCTAAGAGAAAATC 57.791 33.333 0.00 0.00 0.00 2.17
139 149 7.807977 AACAAGTTCAGCTAAGAGAAAATCA 57.192 32.000 0.00 0.00 0.00 2.57
140 150 7.432350 ACAAGTTCAGCTAAGAGAAAATCAG 57.568 36.000 0.00 0.00 0.00 2.90
141 151 6.429385 ACAAGTTCAGCTAAGAGAAAATCAGG 59.571 38.462 0.00 0.00 0.00 3.86
143 153 6.405538 AGTTCAGCTAAGAGAAAATCAGGAG 58.594 40.000 0.00 0.00 0.00 3.69
145 155 6.219417 TCAGCTAAGAGAAAATCAGGAGAG 57.781 41.667 0.00 0.00 0.00 3.20
146 156 5.954752 TCAGCTAAGAGAAAATCAGGAGAGA 59.045 40.000 0.00 0.00 0.00 3.10
147 157 6.438741 TCAGCTAAGAGAAAATCAGGAGAGAA 59.561 38.462 0.00 0.00 0.00 2.87
148 158 7.125507 TCAGCTAAGAGAAAATCAGGAGAGAAT 59.874 37.037 0.00 0.00 0.00 2.40
149 159 7.439056 CAGCTAAGAGAAAATCAGGAGAGAATC 59.561 40.741 0.00 0.00 0.00 2.52
150 160 7.125507 AGCTAAGAGAAAATCAGGAGAGAATCA 59.874 37.037 0.00 0.00 37.82 2.57
151 161 7.933033 GCTAAGAGAAAATCAGGAGAGAATCAT 59.067 37.037 0.00 0.00 37.82 2.45
152 162 9.480053 CTAAGAGAAAATCAGGAGAGAATCATC 57.520 37.037 0.00 0.00 37.82 2.92
153 163 7.434927 AGAGAAAATCAGGAGAGAATCATCA 57.565 36.000 0.00 0.00 37.82 3.07
154 164 8.036585 AGAGAAAATCAGGAGAGAATCATCAT 57.963 34.615 0.00 0.00 37.82 2.45
155 165 8.152246 AGAGAAAATCAGGAGAGAATCATCATC 58.848 37.037 0.00 0.00 37.82 2.92
156 166 7.225725 AGAAAATCAGGAGAGAATCATCATCC 58.774 38.462 0.00 0.00 37.82 3.51
157 167 5.502089 AATCAGGAGAGAATCATCATCCC 57.498 43.478 0.00 0.00 37.82 3.85
158 168 3.932601 TCAGGAGAGAATCATCATCCCA 58.067 45.455 0.00 0.00 37.82 4.37
159 169 4.301205 TCAGGAGAGAATCATCATCCCAA 58.699 43.478 0.00 0.00 37.82 4.12
160 170 4.347292 TCAGGAGAGAATCATCATCCCAAG 59.653 45.833 0.00 0.00 37.82 3.61
161 171 4.347292 CAGGAGAGAATCATCATCCCAAGA 59.653 45.833 0.00 0.00 37.82 3.02
162 172 4.973856 AGGAGAGAATCATCATCCCAAGAA 59.026 41.667 0.00 0.00 37.82 2.52
163 173 5.431073 AGGAGAGAATCATCATCCCAAGAAA 59.569 40.000 0.00 0.00 37.82 2.52
164 174 6.102910 AGGAGAGAATCATCATCCCAAGAAAT 59.897 38.462 0.00 0.00 37.82 2.17
165 175 6.776603 GGAGAGAATCATCATCCCAAGAAATT 59.223 38.462 0.00 0.00 37.82 1.82
166 176 7.941238 GGAGAGAATCATCATCCCAAGAAATTA 59.059 37.037 0.00 0.00 37.82 1.40
167 177 8.688747 AGAGAATCATCATCCCAAGAAATTAC 57.311 34.615 0.00 0.00 37.82 1.89
168 178 8.277197 AGAGAATCATCATCCCAAGAAATTACA 58.723 33.333 0.00 0.00 37.82 2.41
169 179 8.461249 AGAATCATCATCCCAAGAAATTACAG 57.539 34.615 0.00 0.00 0.00 2.74
170 180 8.277197 AGAATCATCATCCCAAGAAATTACAGA 58.723 33.333 0.00 0.00 0.00 3.41
171 181 7.814264 ATCATCATCCCAAGAAATTACAGAC 57.186 36.000 0.00 0.00 0.00 3.51
172 182 6.962182 TCATCATCCCAAGAAATTACAGACT 58.038 36.000 0.00 0.00 0.00 3.24
173 183 6.825213 TCATCATCCCAAGAAATTACAGACTG 59.175 38.462 0.00 0.00 0.00 3.51
174 184 6.126863 TCATCCCAAGAAATTACAGACTGT 57.873 37.500 13.68 13.68 0.00 3.55
175 185 5.939883 TCATCCCAAGAAATTACAGACTGTG 59.060 40.000 18.58 0.00 0.00 3.66
176 186 5.560722 TCCCAAGAAATTACAGACTGTGA 57.439 39.130 18.58 10.66 0.00 3.58
177 187 5.935945 TCCCAAGAAATTACAGACTGTGAA 58.064 37.500 18.58 8.81 0.00 3.18
178 188 6.542821 TCCCAAGAAATTACAGACTGTGAAT 58.457 36.000 18.58 10.56 0.00 2.57
179 189 6.655003 TCCCAAGAAATTACAGACTGTGAATC 59.345 38.462 18.58 12.27 0.00 2.52
180 190 6.430925 CCCAAGAAATTACAGACTGTGAATCA 59.569 38.462 18.58 0.00 0.00 2.57
181 191 7.040478 CCCAAGAAATTACAGACTGTGAATCAA 60.040 37.037 18.58 4.28 0.00 2.57
182 192 8.352201 CCAAGAAATTACAGACTGTGAATCAAA 58.648 33.333 18.58 3.53 0.00 2.69
183 193 9.734620 CAAGAAATTACAGACTGTGAATCAAAA 57.265 29.630 18.58 2.79 0.00 2.44
184 194 9.956720 AAGAAATTACAGACTGTGAATCAAAAG 57.043 29.630 18.58 0.00 0.00 2.27
185 195 9.342308 AGAAATTACAGACTGTGAATCAAAAGA 57.658 29.630 18.58 0.00 0.00 2.52
186 196 9.387123 GAAATTACAGACTGTGAATCAAAAGAC 57.613 33.333 18.58 0.00 0.00 3.01
187 197 8.682936 AATTACAGACTGTGAATCAAAAGACT 57.317 30.769 18.58 0.00 0.00 3.24
188 198 8.682936 ATTACAGACTGTGAATCAAAAGACTT 57.317 30.769 18.58 0.00 0.00 3.01
189 199 8.506168 TTACAGACTGTGAATCAAAAGACTTT 57.494 30.769 18.58 0.00 0.00 2.66
190 200 7.020914 ACAGACTGTGAATCAAAAGACTTTC 57.979 36.000 7.47 0.00 0.00 2.62
191 201 6.825721 ACAGACTGTGAATCAAAAGACTTTCT 59.174 34.615 7.47 0.00 0.00 2.52
192 202 7.987458 ACAGACTGTGAATCAAAAGACTTTCTA 59.013 33.333 7.47 0.00 0.00 2.10
193 203 8.494347 CAGACTGTGAATCAAAAGACTTTCTAG 58.506 37.037 0.00 0.00 0.00 2.43
194 204 7.172361 AGACTGTGAATCAAAAGACTTTCTAGC 59.828 37.037 0.00 0.00 0.00 3.42
195 205 6.995091 ACTGTGAATCAAAAGACTTTCTAGCT 59.005 34.615 0.00 0.00 0.00 3.32
196 206 7.500559 ACTGTGAATCAAAAGACTTTCTAGCTT 59.499 33.333 0.00 0.00 0.00 3.74
197 207 8.225603 TGTGAATCAAAAGACTTTCTAGCTTT 57.774 30.769 0.00 0.00 32.68 3.51
198 208 8.131100 TGTGAATCAAAAGACTTTCTAGCTTTG 58.869 33.333 0.00 0.00 32.12 2.77
199 209 7.114106 GTGAATCAAAAGACTTTCTAGCTTTGC 59.886 37.037 0.00 0.00 32.12 3.68
200 210 5.438761 TCAAAAGACTTTCTAGCTTTGCC 57.561 39.130 0.00 0.00 32.12 4.52
201 211 5.133221 TCAAAAGACTTTCTAGCTTTGCCT 58.867 37.500 0.00 0.00 32.12 4.75
202 212 5.594317 TCAAAAGACTTTCTAGCTTTGCCTT 59.406 36.000 0.00 0.00 32.12 4.35
203 213 6.096846 TCAAAAGACTTTCTAGCTTTGCCTTT 59.903 34.615 0.00 0.00 32.12 3.11
204 214 5.697473 AAGACTTTCTAGCTTTGCCTTTC 57.303 39.130 0.00 0.00 0.00 2.62
205 215 4.979335 AGACTTTCTAGCTTTGCCTTTCT 58.021 39.130 0.00 0.00 0.00 2.52
206 216 5.380900 AGACTTTCTAGCTTTGCCTTTCTT 58.619 37.500 0.00 0.00 0.00 2.52
207 217 5.240403 AGACTTTCTAGCTTTGCCTTTCTTG 59.760 40.000 0.00 0.00 0.00 3.02
208 218 4.279420 ACTTTCTAGCTTTGCCTTTCTTGG 59.721 41.667 0.00 0.00 0.00 3.61
209 219 3.508845 TCTAGCTTTGCCTTTCTTGGT 57.491 42.857 0.00 0.00 0.00 3.67
210 220 3.412386 TCTAGCTTTGCCTTTCTTGGTC 58.588 45.455 0.00 0.00 0.00 4.02
211 221 1.332195 AGCTTTGCCTTTCTTGGTCC 58.668 50.000 0.00 0.00 0.00 4.46
212 222 1.039856 GCTTTGCCTTTCTTGGTCCA 58.960 50.000 0.00 0.00 0.00 4.02
213 223 1.412343 GCTTTGCCTTTCTTGGTCCAA 59.588 47.619 3.76 3.76 0.00 3.53
214 224 2.546584 GCTTTGCCTTTCTTGGTCCAAG 60.547 50.000 23.69 23.69 42.25 3.61
215 225 1.039856 TTGCCTTTCTTGGTCCAAGC 58.960 50.000 24.66 15.03 40.84 4.01
216 226 0.106268 TGCCTTTCTTGGTCCAAGCA 60.106 50.000 24.66 17.34 40.84 3.91
217 227 0.315251 GCCTTTCTTGGTCCAAGCAC 59.685 55.000 24.66 9.45 40.84 4.40
218 228 0.593128 CCTTTCTTGGTCCAAGCACG 59.407 55.000 24.66 13.01 40.84 5.34
219 229 1.593196 CTTTCTTGGTCCAAGCACGA 58.407 50.000 24.66 6.95 40.84 4.35
220 230 1.532868 CTTTCTTGGTCCAAGCACGAG 59.467 52.381 24.66 15.13 40.84 4.18
221 231 0.250295 TTCTTGGTCCAAGCACGAGG 60.250 55.000 24.66 2.73 40.84 4.63
222 232 1.071471 CTTGGTCCAAGCACGAGGT 59.929 57.895 18.66 0.00 34.63 3.85
223 233 0.951040 CTTGGTCCAAGCACGAGGTC 60.951 60.000 18.66 0.00 34.63 3.85
224 234 1.407656 TTGGTCCAAGCACGAGGTCT 61.408 55.000 0.00 0.00 0.00 3.85
225 235 1.371558 GGTCCAAGCACGAGGTCTT 59.628 57.895 0.00 0.00 0.00 3.01
226 236 0.670854 GGTCCAAGCACGAGGTCTTC 60.671 60.000 0.00 0.00 0.00 2.87
227 237 0.033504 GTCCAAGCACGAGGTCTTCA 59.966 55.000 0.00 0.00 0.00 3.02
228 238 0.756294 TCCAAGCACGAGGTCTTCAA 59.244 50.000 0.00 0.00 0.00 2.69
229 239 1.347707 TCCAAGCACGAGGTCTTCAAT 59.652 47.619 0.00 0.00 0.00 2.57
230 240 2.154462 CCAAGCACGAGGTCTTCAATT 58.846 47.619 0.00 0.00 0.00 2.32
231 241 2.160417 CCAAGCACGAGGTCTTCAATTC 59.840 50.000 0.00 0.00 0.00 2.17
232 242 3.070018 CAAGCACGAGGTCTTCAATTCT 58.930 45.455 0.00 0.00 0.00 2.40
233 243 3.409026 AGCACGAGGTCTTCAATTCTT 57.591 42.857 0.00 0.00 0.00 2.52
234 244 3.744660 AGCACGAGGTCTTCAATTCTTT 58.255 40.909 0.00 0.00 0.00 2.52
235 245 4.137543 AGCACGAGGTCTTCAATTCTTTT 58.862 39.130 0.00 0.00 0.00 2.27
236 246 4.023707 AGCACGAGGTCTTCAATTCTTTTG 60.024 41.667 0.00 0.00 0.00 2.44
237 247 4.261197 GCACGAGGTCTTCAATTCTTTTGT 60.261 41.667 0.00 0.00 0.00 2.83
238 248 5.049680 GCACGAGGTCTTCAATTCTTTTGTA 60.050 40.000 0.00 0.00 0.00 2.41
239 249 6.363473 CACGAGGTCTTCAATTCTTTTGTAC 58.637 40.000 0.00 0.00 0.00 2.90
240 250 5.469084 ACGAGGTCTTCAATTCTTTTGTACC 59.531 40.000 0.00 0.00 0.00 3.34
241 251 5.468746 CGAGGTCTTCAATTCTTTTGTACCA 59.531 40.000 0.00 0.00 0.00 3.25
242 252 6.017440 CGAGGTCTTCAATTCTTTTGTACCAA 60.017 38.462 0.00 0.00 0.00 3.67
243 253 7.308589 CGAGGTCTTCAATTCTTTTGTACCAAT 60.309 37.037 0.00 0.00 0.00 3.16
244 254 8.934023 AGGTCTTCAATTCTTTTGTACCAATA 57.066 30.769 0.00 0.00 0.00 1.90
245 255 9.362151 AGGTCTTCAATTCTTTTGTACCAATAA 57.638 29.630 0.00 0.00 0.00 1.40
246 256 9.974980 GGTCTTCAATTCTTTTGTACCAATAAA 57.025 29.630 0.00 0.00 0.00 1.40
259 269 8.657074 TTGTACCAATAAATTCTAGATCCACG 57.343 34.615 0.00 0.00 0.00 4.94
260 270 7.788026 TGTACCAATAAATTCTAGATCCACGT 58.212 34.615 0.00 0.00 0.00 4.49
261 271 8.262227 TGTACCAATAAATTCTAGATCCACGTT 58.738 33.333 0.00 0.00 0.00 3.99
262 272 9.106070 GTACCAATAAATTCTAGATCCACGTTT 57.894 33.333 0.00 0.00 0.00 3.60
263 273 8.575649 ACCAATAAATTCTAGATCCACGTTTT 57.424 30.769 0.00 0.00 0.00 2.43
264 274 9.020731 ACCAATAAATTCTAGATCCACGTTTTT 57.979 29.630 0.00 0.00 0.00 1.94
278 288 2.817424 TTTTTGCGGCCACATGCA 59.183 50.000 2.24 0.00 43.89 3.96
279 289 1.370437 TTTTTGCGGCCACATGCAT 59.630 47.368 2.24 0.00 43.89 3.96
280 290 0.949588 TTTTTGCGGCCACATGCATG 60.950 50.000 25.09 25.09 43.89 4.06
281 291 1.813728 TTTTGCGGCCACATGCATGA 61.814 50.000 32.75 5.74 43.89 3.07
282 292 1.813728 TTTGCGGCCACATGCATGAA 61.814 50.000 32.75 11.95 43.89 2.57
283 293 2.202650 GCGGCCACATGCATGAAC 60.203 61.111 32.75 19.44 43.89 3.18
284 294 2.703798 GCGGCCACATGCATGAACT 61.704 57.895 32.75 8.19 43.89 3.01
285 295 1.885157 CGGCCACATGCATGAACTT 59.115 52.632 32.75 7.78 43.89 2.66
286 296 0.244450 CGGCCACATGCATGAACTTT 59.756 50.000 32.75 7.36 43.89 2.66
287 297 1.472082 CGGCCACATGCATGAACTTTA 59.528 47.619 32.75 0.00 43.89 1.85
288 298 2.731968 CGGCCACATGCATGAACTTTAC 60.732 50.000 32.75 13.90 43.89 2.01
289 299 2.493278 GGCCACATGCATGAACTTTACT 59.507 45.455 32.75 4.93 43.89 2.24
290 300 3.428045 GGCCACATGCATGAACTTTACTC 60.428 47.826 32.75 10.18 43.89 2.59
291 301 3.428045 GCCACATGCATGAACTTTACTCC 60.428 47.826 32.75 5.29 40.77 3.85
292 302 3.758023 CCACATGCATGAACTTTACTCCA 59.242 43.478 32.75 0.00 0.00 3.86
293 303 4.400251 CCACATGCATGAACTTTACTCCAT 59.600 41.667 32.75 2.54 0.00 3.41
294 304 5.589855 CCACATGCATGAACTTTACTCCATA 59.410 40.000 32.75 0.00 0.00 2.74
295 305 6.238566 CCACATGCATGAACTTTACTCCATAG 60.239 42.308 32.75 0.18 0.00 2.23
296 306 6.317140 CACATGCATGAACTTTACTCCATAGT 59.683 38.462 32.75 0.95 39.91 2.12
297 307 6.317140 ACATGCATGAACTTTACTCCATAGTG 59.683 38.462 32.75 1.05 36.36 2.74
298 308 6.048732 TGCATGAACTTTACTCCATAGTGA 57.951 37.500 0.00 0.00 36.36 3.41
299 309 5.874810 TGCATGAACTTTACTCCATAGTGAC 59.125 40.000 0.00 0.00 36.36 3.67
300 310 5.294552 GCATGAACTTTACTCCATAGTGACC 59.705 44.000 0.00 0.00 36.36 4.02
301 311 6.406370 CATGAACTTTACTCCATAGTGACCA 58.594 40.000 0.00 0.00 36.36 4.02
302 312 6.037786 TGAACTTTACTCCATAGTGACCAG 57.962 41.667 0.00 0.00 36.36 4.00
303 313 4.473477 ACTTTACTCCATAGTGACCAGC 57.527 45.455 0.00 0.00 36.36 4.85
304 314 3.119101 ACTTTACTCCATAGTGACCAGCG 60.119 47.826 0.00 0.00 36.36 5.18
305 315 0.744874 TACTCCATAGTGACCAGCGC 59.255 55.000 0.00 0.00 36.36 5.92
306 316 1.227380 CTCCATAGTGACCAGCGCC 60.227 63.158 2.29 0.00 0.00 6.53
307 317 1.960040 CTCCATAGTGACCAGCGCCA 61.960 60.000 2.29 0.00 0.00 5.69
308 318 1.522355 CCATAGTGACCAGCGCCAG 60.522 63.158 2.29 0.00 0.00 4.85
309 319 1.522355 CATAGTGACCAGCGCCAGG 60.522 63.158 14.40 14.40 0.00 4.45
310 320 1.685765 ATAGTGACCAGCGCCAGGA 60.686 57.895 21.92 0.60 0.00 3.86
311 321 1.264749 ATAGTGACCAGCGCCAGGAA 61.265 55.000 21.92 7.83 0.00 3.36
312 322 1.476845 TAGTGACCAGCGCCAGGAAA 61.477 55.000 21.92 7.50 0.00 3.13
313 323 2.281484 TGACCAGCGCCAGGAAAC 60.281 61.111 21.92 12.81 0.00 2.78
314 324 2.032681 GACCAGCGCCAGGAAACT 59.967 61.111 21.92 0.32 46.44 2.66
333 343 4.073293 ACTGGAGTACTCAGTTTGGTTG 57.927 45.455 23.91 5.69 42.17 3.77
334 344 3.454812 ACTGGAGTACTCAGTTTGGTTGT 59.545 43.478 23.91 6.24 42.17 3.32
335 345 4.058817 CTGGAGTACTCAGTTTGGTTGTC 58.941 47.826 23.91 3.10 0.00 3.18
336 346 3.057734 GGAGTACTCAGTTTGGTTGTCG 58.942 50.000 23.91 0.00 0.00 4.35
337 347 2.475487 GAGTACTCAGTTTGGTTGTCGC 59.525 50.000 18.20 0.00 0.00 5.19
338 348 2.102588 AGTACTCAGTTTGGTTGTCGCT 59.897 45.455 0.00 0.00 0.00 4.93
339 349 1.299541 ACTCAGTTTGGTTGTCGCTG 58.700 50.000 0.00 0.00 0.00 5.18
340 350 0.588252 CTCAGTTTGGTTGTCGCTGG 59.412 55.000 0.00 0.00 0.00 4.85
341 351 0.107410 TCAGTTTGGTTGTCGCTGGT 60.107 50.000 0.00 0.00 0.00 4.00
342 352 0.029300 CAGTTTGGTTGTCGCTGGTG 59.971 55.000 0.00 0.00 0.00 4.17
343 353 1.299089 GTTTGGTTGTCGCTGGTGC 60.299 57.895 0.00 0.00 0.00 5.01
344 354 1.750780 TTTGGTTGTCGCTGGTGCA 60.751 52.632 0.00 0.00 39.64 4.57
345 355 1.999071 TTTGGTTGTCGCTGGTGCAC 61.999 55.000 8.80 8.80 39.64 4.57
346 356 2.899838 GGTTGTCGCTGGTGCACA 60.900 61.111 20.43 3.92 39.64 4.57
347 357 2.260869 GGTTGTCGCTGGTGCACAT 61.261 57.895 20.43 0.00 39.64 3.21
348 358 0.953471 GGTTGTCGCTGGTGCACATA 60.953 55.000 20.43 5.99 39.64 2.29
349 359 0.165944 GTTGTCGCTGGTGCACATAC 59.834 55.000 20.43 9.02 39.64 2.39
350 360 0.953471 TTGTCGCTGGTGCACATACC 60.953 55.000 20.43 0.83 41.24 2.73
360 370 5.823861 TGGTGCACATACCATGTCTATAT 57.176 39.130 20.43 0.00 45.46 0.86
361 371 6.926630 TGGTGCACATACCATGTCTATATA 57.073 37.500 20.43 0.00 45.46 0.86
362 372 6.697395 TGGTGCACATACCATGTCTATATAC 58.303 40.000 20.43 0.00 45.46 1.47
363 373 6.268847 TGGTGCACATACCATGTCTATATACA 59.731 38.462 20.43 0.00 45.46 2.29
364 374 6.813649 GGTGCACATACCATGTCTATATACAG 59.186 42.308 20.43 0.00 42.70 2.74
365 375 7.378966 GTGCACATACCATGTCTATATACAGT 58.621 38.462 13.17 0.00 42.70 3.55
366 376 8.520351 GTGCACATACCATGTCTATATACAGTA 58.480 37.037 13.17 0.00 42.70 2.74
367 377 8.520351 TGCACATACCATGTCTATATACAGTAC 58.480 37.037 0.00 0.00 42.70 2.73
368 378 8.740906 GCACATACCATGTCTATATACAGTACT 58.259 37.037 0.00 0.00 42.70 2.73
370 380 9.463902 ACATACCATGTCTATATACAGTACTCC 57.536 37.037 0.00 0.00 39.92 3.85
371 381 9.462606 CATACCATGTCTATATACAGTACTCCA 57.537 37.037 0.00 0.00 31.70 3.86
372 382 9.688091 ATACCATGTCTATATACAGTACTCCAG 57.312 37.037 0.00 0.00 31.70 3.86
373 383 7.756614 ACCATGTCTATATACAGTACTCCAGA 58.243 38.462 0.00 0.00 31.70 3.86
374 384 7.666388 ACCATGTCTATATACAGTACTCCAGAC 59.334 40.741 0.00 0.76 31.70 3.51
375 385 7.148390 CCATGTCTATATACAGTACTCCAGACG 60.148 44.444 0.00 0.00 35.13 4.18
376 386 6.824553 TGTCTATATACAGTACTCCAGACGT 58.175 40.000 0.00 0.00 35.13 4.34
377 387 7.955918 TGTCTATATACAGTACTCCAGACGTA 58.044 38.462 0.00 0.00 35.13 3.57
378 388 8.591940 TGTCTATATACAGTACTCCAGACGTAT 58.408 37.037 0.00 0.00 35.13 3.06
379 389 9.086336 GTCTATATACAGTACTCCAGACGTATC 57.914 40.741 0.00 0.00 0.00 2.24
380 390 9.033711 TCTATATACAGTACTCCAGACGTATCT 57.966 37.037 0.00 0.00 34.57 1.98
381 391 9.656040 CTATATACAGTACTCCAGACGTATCTT 57.344 37.037 0.00 0.00 30.42 2.40
382 392 6.864360 ATACAGTACTCCAGACGTATCTTC 57.136 41.667 0.00 0.00 30.42 2.87
383 393 4.586884 ACAGTACTCCAGACGTATCTTCA 58.413 43.478 0.00 0.00 30.42 3.02
384 394 5.008331 ACAGTACTCCAGACGTATCTTCAA 58.992 41.667 0.00 0.00 30.42 2.69
385 395 5.475909 ACAGTACTCCAGACGTATCTTCAAA 59.524 40.000 0.00 0.00 30.42 2.69
386 396 5.800941 CAGTACTCCAGACGTATCTTCAAAC 59.199 44.000 0.00 0.00 30.42 2.93
387 397 4.866508 ACTCCAGACGTATCTTCAAACA 57.133 40.909 0.00 0.00 30.42 2.83
388 398 5.209818 ACTCCAGACGTATCTTCAAACAA 57.790 39.130 0.00 0.00 30.42 2.83
389 399 5.794894 ACTCCAGACGTATCTTCAAACAAT 58.205 37.500 0.00 0.00 30.42 2.71
390 400 6.231211 ACTCCAGACGTATCTTCAAACAATT 58.769 36.000 0.00 0.00 30.42 2.32
391 401 6.147821 ACTCCAGACGTATCTTCAAACAATTG 59.852 38.462 3.24 3.24 33.32 2.32
392 402 6.227522 TCCAGACGTATCTTCAAACAATTGA 58.772 36.000 13.59 0.00 43.70 2.57
393 403 6.368791 TCCAGACGTATCTTCAAACAATTGAG 59.631 38.462 13.59 0.00 45.82 3.02
394 404 6.402550 CCAGACGTATCTTCAAACAATTGAGG 60.403 42.308 13.59 0.88 45.82 3.86
395 405 6.147821 CAGACGTATCTTCAAACAATTGAGGT 59.852 38.462 13.59 0.00 45.82 3.85
396 406 7.330946 CAGACGTATCTTCAAACAATTGAGGTA 59.669 37.037 13.59 0.00 45.82 3.08
397 407 8.041323 AGACGTATCTTCAAACAATTGAGGTAT 58.959 33.333 13.59 0.00 45.82 2.73
398 408 8.197988 ACGTATCTTCAAACAATTGAGGTATC 57.802 34.615 13.59 0.00 45.82 2.24
399 409 7.822334 ACGTATCTTCAAACAATTGAGGTATCA 59.178 33.333 13.59 0.00 45.82 2.15
400 410 8.116753 CGTATCTTCAAACAATTGAGGTATCAC 58.883 37.037 13.59 0.00 45.82 3.06
401 411 6.480524 TCTTCAAACAATTGAGGTATCACG 57.519 37.500 13.59 0.00 45.82 4.35
402 412 5.995282 TCTTCAAACAATTGAGGTATCACGT 59.005 36.000 13.59 0.00 45.82 4.49
403 413 5.856126 TCAAACAATTGAGGTATCACGTC 57.144 39.130 13.59 0.00 40.59 4.34
404 414 5.301555 TCAAACAATTGAGGTATCACGTCA 58.698 37.500 13.59 0.00 40.59 4.35
405 415 5.178623 TCAAACAATTGAGGTATCACGTCAC 59.821 40.000 13.59 0.00 41.94 3.67
406 416 3.596214 ACAATTGAGGTATCACGTCACC 58.404 45.455 13.59 2.87 41.94 4.02
408 418 4.253685 CAATTGAGGTATCACGTCACCTT 58.746 43.478 12.90 0.00 45.32 3.50
409 419 4.553330 ATTGAGGTATCACGTCACCTTT 57.447 40.909 12.90 1.75 45.32 3.11
410 420 3.587797 TGAGGTATCACGTCACCTTTC 57.412 47.619 12.90 4.35 45.32 2.62
411 421 2.232941 TGAGGTATCACGTCACCTTTCC 59.767 50.000 12.90 3.56 45.32 3.13
412 422 2.496470 GAGGTATCACGTCACCTTTCCT 59.504 50.000 12.90 2.92 45.32 3.36
413 423 2.233922 AGGTATCACGTCACCTTTCCTG 59.766 50.000 7.12 0.00 42.68 3.86
414 424 2.028385 GGTATCACGTCACCTTTCCTGT 60.028 50.000 3.74 0.00 0.00 4.00
415 425 2.457366 ATCACGTCACCTTTCCTGTC 57.543 50.000 0.00 0.00 0.00 3.51
416 426 1.410004 TCACGTCACCTTTCCTGTCT 58.590 50.000 0.00 0.00 0.00 3.41
417 427 1.760613 TCACGTCACCTTTCCTGTCTT 59.239 47.619 0.00 0.00 0.00 3.01
418 428 1.867233 CACGTCACCTTTCCTGTCTTG 59.133 52.381 0.00 0.00 0.00 3.02
419 429 0.868406 CGTCACCTTTCCTGTCTTGC 59.132 55.000 0.00 0.00 0.00 4.01
420 430 1.239347 GTCACCTTTCCTGTCTTGCC 58.761 55.000 0.00 0.00 0.00 4.52
421 431 0.250295 TCACCTTTCCTGTCTTGCCG 60.250 55.000 0.00 0.00 0.00 5.69
422 432 1.600916 ACCTTTCCTGTCTTGCCGC 60.601 57.895 0.00 0.00 0.00 6.53
423 433 1.600636 CCTTTCCTGTCTTGCCGCA 60.601 57.895 0.00 0.00 0.00 5.69
424 434 1.576421 CTTTCCTGTCTTGCCGCAC 59.424 57.895 0.00 0.00 0.00 5.34
425 435 1.153066 TTTCCTGTCTTGCCGCACA 60.153 52.632 0.00 0.00 0.00 4.57
426 436 0.749818 TTTCCTGTCTTGCCGCACAA 60.750 50.000 0.00 0.00 36.62 3.33
427 437 0.537143 TTCCTGTCTTGCCGCACAAT 60.537 50.000 0.00 0.00 37.72 2.71
428 438 0.537143 TCCTGTCTTGCCGCACAATT 60.537 50.000 0.00 0.00 37.72 2.32
429 439 0.109597 CCTGTCTTGCCGCACAATTC 60.110 55.000 0.00 0.00 37.72 2.17
430 440 0.877071 CTGTCTTGCCGCACAATTCT 59.123 50.000 0.00 0.00 37.72 2.40
431 441 0.874390 TGTCTTGCCGCACAATTCTC 59.126 50.000 0.00 0.00 37.72 2.87
432 442 0.169009 GTCTTGCCGCACAATTCTCC 59.831 55.000 0.00 0.00 37.72 3.71
433 443 0.250684 TCTTGCCGCACAATTCTCCA 60.251 50.000 0.00 0.00 37.72 3.86
434 444 0.169672 CTTGCCGCACAATTCTCCAG 59.830 55.000 0.00 0.00 37.72 3.86
435 445 0.537143 TTGCCGCACAATTCTCCAGT 60.537 50.000 0.00 0.00 31.73 4.00
436 446 0.537143 TGCCGCACAATTCTCCAGTT 60.537 50.000 0.00 0.00 0.00 3.16
437 447 0.598065 GCCGCACAATTCTCCAGTTT 59.402 50.000 0.00 0.00 0.00 2.66
438 448 1.810151 GCCGCACAATTCTCCAGTTTA 59.190 47.619 0.00 0.00 0.00 2.01
439 449 2.159517 GCCGCACAATTCTCCAGTTTAG 60.160 50.000 0.00 0.00 0.00 1.85
440 450 2.159517 CCGCACAATTCTCCAGTTTAGC 60.160 50.000 0.00 0.00 0.00 3.09
441 451 2.159517 CGCACAATTCTCCAGTTTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
442 452 2.164422 GCACAATTCTCCAGTTTAGCCC 59.836 50.000 0.00 0.00 0.00 5.19
443 453 3.420893 CACAATTCTCCAGTTTAGCCCA 58.579 45.455 0.00 0.00 0.00 5.36
444 454 4.019174 CACAATTCTCCAGTTTAGCCCAT 58.981 43.478 0.00 0.00 0.00 4.00
445 455 5.192927 CACAATTCTCCAGTTTAGCCCATA 58.807 41.667 0.00 0.00 0.00 2.74
446 456 5.829924 CACAATTCTCCAGTTTAGCCCATAT 59.170 40.000 0.00 0.00 0.00 1.78
447 457 6.998074 CACAATTCTCCAGTTTAGCCCATATA 59.002 38.462 0.00 0.00 0.00 0.86
448 458 7.502226 CACAATTCTCCAGTTTAGCCCATATAA 59.498 37.037 0.00 0.00 0.00 0.98
449 459 8.058847 ACAATTCTCCAGTTTAGCCCATATAAA 58.941 33.333 0.00 0.00 0.00 1.40
450 460 9.082313 CAATTCTCCAGTTTAGCCCATATAAAT 57.918 33.333 0.00 0.00 0.00 1.40
451 461 8.870075 ATTCTCCAGTTTAGCCCATATAAATC 57.130 34.615 0.00 0.00 0.00 2.17
452 462 6.779860 TCTCCAGTTTAGCCCATATAAATCC 58.220 40.000 0.00 0.00 0.00 3.01
453 463 6.562608 TCTCCAGTTTAGCCCATATAAATCCT 59.437 38.462 0.00 0.00 0.00 3.24
454 464 6.779860 TCCAGTTTAGCCCATATAAATCCTC 58.220 40.000 0.00 0.00 0.00 3.71
455 465 5.946377 CCAGTTTAGCCCATATAAATCCTCC 59.054 44.000 0.00 0.00 0.00 4.30
456 466 6.467194 CCAGTTTAGCCCATATAAATCCTCCA 60.467 42.308 0.00 0.00 0.00 3.86
457 467 7.004086 CAGTTTAGCCCATATAAATCCTCCAA 58.996 38.462 0.00 0.00 0.00 3.53
458 468 7.004691 AGTTTAGCCCATATAAATCCTCCAAC 58.995 38.462 0.00 0.00 0.00 3.77
459 469 6.780198 TTAGCCCATATAAATCCTCCAACT 57.220 37.500 0.00 0.00 0.00 3.16
460 470 5.669798 AGCCCATATAAATCCTCCAACTT 57.330 39.130 0.00 0.00 0.00 2.66
461 471 5.635120 AGCCCATATAAATCCTCCAACTTC 58.365 41.667 0.00 0.00 0.00 3.01
462 472 5.373854 AGCCCATATAAATCCTCCAACTTCT 59.626 40.000 0.00 0.00 0.00 2.85
463 473 5.707764 GCCCATATAAATCCTCCAACTTCTC 59.292 44.000 0.00 0.00 0.00 2.87
464 474 6.466470 GCCCATATAAATCCTCCAACTTCTCT 60.466 42.308 0.00 0.00 0.00 3.10
465 475 7.256691 GCCCATATAAATCCTCCAACTTCTCTA 60.257 40.741 0.00 0.00 0.00 2.43
466 476 8.830741 CCCATATAAATCCTCCAACTTCTCTAT 58.169 37.037 0.00 0.00 0.00 1.98
471 481 7.502060 AAATCCTCCAACTTCTCTATTCAGA 57.498 36.000 0.00 0.00 0.00 3.27
472 482 7.502060 AATCCTCCAACTTCTCTATTCAGAA 57.498 36.000 0.00 0.00 0.00 3.02
481 491 4.727507 TCTCTATTCAGAAGTGCAGACC 57.272 45.455 0.00 0.00 0.00 3.85
482 492 4.348486 TCTCTATTCAGAAGTGCAGACCT 58.652 43.478 0.00 0.00 0.00 3.85
483 493 5.510430 TCTCTATTCAGAAGTGCAGACCTA 58.490 41.667 0.00 0.00 0.00 3.08
484 494 5.592282 TCTCTATTCAGAAGTGCAGACCTAG 59.408 44.000 0.00 0.00 0.00 3.02
485 495 3.902881 ATTCAGAAGTGCAGACCTAGG 57.097 47.619 7.41 7.41 0.00 3.02
486 496 1.561643 TCAGAAGTGCAGACCTAGGG 58.438 55.000 14.81 0.00 0.00 3.53
487 497 0.539051 CAGAAGTGCAGACCTAGGGG 59.461 60.000 14.81 3.21 38.88 4.79
488 498 1.222113 GAAGTGCAGACCTAGGGGC 59.778 63.158 14.81 14.10 35.63 5.80
489 499 1.229658 AAGTGCAGACCTAGGGGCT 60.230 57.895 14.81 7.19 35.63 5.19
490 500 0.042731 AAGTGCAGACCTAGGGGCTA 59.957 55.000 14.81 2.57 35.63 3.93
491 501 0.266152 AGTGCAGACCTAGGGGCTAT 59.734 55.000 14.81 4.19 35.63 2.97
492 502 1.132500 GTGCAGACCTAGGGGCTATT 58.868 55.000 14.81 0.00 35.63 1.73
493 503 1.490910 GTGCAGACCTAGGGGCTATTT 59.509 52.381 14.81 0.00 35.63 1.40
494 504 2.092375 GTGCAGACCTAGGGGCTATTTT 60.092 50.000 14.81 0.00 35.63 1.82
495 505 2.092429 TGCAGACCTAGGGGCTATTTTG 60.092 50.000 14.81 0.00 35.63 2.44
496 506 2.092375 GCAGACCTAGGGGCTATTTTGT 60.092 50.000 14.81 0.00 35.63 2.83
497 507 3.624959 GCAGACCTAGGGGCTATTTTGTT 60.625 47.826 14.81 0.00 35.63 2.83
498 508 4.600062 CAGACCTAGGGGCTATTTTGTTT 58.400 43.478 14.81 0.00 35.63 2.83
499 509 4.399303 CAGACCTAGGGGCTATTTTGTTTG 59.601 45.833 14.81 0.00 35.63 2.93
500 510 4.291249 AGACCTAGGGGCTATTTTGTTTGA 59.709 41.667 14.81 0.00 35.63 2.69
501 511 4.600062 ACCTAGGGGCTATTTTGTTTGAG 58.400 43.478 14.81 0.00 35.63 3.02
502 512 4.291249 ACCTAGGGGCTATTTTGTTTGAGA 59.709 41.667 14.81 0.00 35.63 3.27
503 513 4.640647 CCTAGGGGCTATTTTGTTTGAGAC 59.359 45.833 0.00 0.00 0.00 3.36
504 514 4.388577 AGGGGCTATTTTGTTTGAGACT 57.611 40.909 0.00 0.00 0.00 3.24
505 515 5.514500 AGGGGCTATTTTGTTTGAGACTA 57.486 39.130 0.00 0.00 0.00 2.59
506 516 5.887754 AGGGGCTATTTTGTTTGAGACTAA 58.112 37.500 0.00 0.00 0.00 2.24
507 517 6.311735 AGGGGCTATTTTGTTTGAGACTAAA 58.688 36.000 0.00 0.00 37.38 1.85
508 518 6.954102 AGGGGCTATTTTGTTTGAGACTAAAT 59.046 34.615 1.81 1.81 43.12 1.40
509 519 7.454694 AGGGGCTATTTTGTTTGAGACTAAATT 59.545 33.333 1.51 0.00 39.55 1.82
510 520 8.094548 GGGGCTATTTTGTTTGAGACTAAATTT 58.905 33.333 1.51 0.00 39.55 1.82
511 521 8.925700 GGGCTATTTTGTTTGAGACTAAATTTG 58.074 33.333 0.00 0.00 39.55 2.32
512 522 9.476202 GGCTATTTTGTTTGAGACTAAATTTGT 57.524 29.630 0.00 0.00 39.55 2.83
522 532 9.677567 TTTGAGACTAAATTTGTCTAATGTTGC 57.322 29.630 17.60 8.62 43.88 4.17
523 533 7.816640 TGAGACTAAATTTGTCTAATGTTGCC 58.183 34.615 17.60 8.14 43.88 4.52
524 534 7.446931 TGAGACTAAATTTGTCTAATGTTGCCA 59.553 33.333 17.60 9.84 43.88 4.92
525 535 7.593825 AGACTAAATTTGTCTAATGTTGCCAC 58.406 34.615 16.65 0.00 42.28 5.01
526 536 7.230510 AGACTAAATTTGTCTAATGTTGCCACA 59.769 33.333 16.65 0.00 42.28 4.17
527 537 7.145323 ACTAAATTTGTCTAATGTTGCCACAC 58.855 34.615 0.00 0.00 35.03 3.82
528 538 5.789643 AATTTGTCTAATGTTGCCACACT 57.210 34.783 0.00 0.00 35.03 3.55
529 539 5.789643 ATTTGTCTAATGTTGCCACACTT 57.210 34.783 0.00 0.00 35.03 3.16
530 540 6.892658 ATTTGTCTAATGTTGCCACACTTA 57.107 33.333 0.00 0.00 35.03 2.24
531 541 6.701145 TTTGTCTAATGTTGCCACACTTAA 57.299 33.333 0.00 0.00 35.03 1.85
532 542 5.682943 TGTCTAATGTTGCCACACTTAAC 57.317 39.130 0.00 0.00 35.03 2.01
533 543 4.517453 TGTCTAATGTTGCCACACTTAACC 59.483 41.667 0.00 0.00 35.03 2.85
534 544 3.749088 TCTAATGTTGCCACACTTAACCG 59.251 43.478 0.00 0.00 35.03 4.44
535 545 1.975660 ATGTTGCCACACTTAACCGT 58.024 45.000 0.00 0.00 35.03 4.83
536 546 2.616634 TGTTGCCACACTTAACCGTA 57.383 45.000 0.00 0.00 0.00 4.02
537 547 2.485903 TGTTGCCACACTTAACCGTAG 58.514 47.619 0.00 0.00 0.00 3.51
538 548 4.115703 ATGTTGCCACACTTAACCGTAGG 61.116 47.826 0.00 0.00 46.64 3.18
553 563 4.701956 CCGTAGGCAAATTTGATCAACT 57.298 40.909 22.31 12.27 46.14 3.16
554 564 5.059404 CCGTAGGCAAATTTGATCAACTT 57.941 39.130 22.31 6.42 46.14 2.66
555 565 6.189677 CCGTAGGCAAATTTGATCAACTTA 57.810 37.500 22.31 1.78 46.14 2.24
556 566 6.258160 CCGTAGGCAAATTTGATCAACTTAG 58.742 40.000 22.31 0.27 46.14 2.18
557 567 6.093495 CCGTAGGCAAATTTGATCAACTTAGA 59.907 38.462 22.31 0.00 46.14 2.10
558 568 7.201732 CCGTAGGCAAATTTGATCAACTTAGAT 60.202 37.037 22.31 0.00 46.14 1.98
559 569 7.641411 CGTAGGCAAATTTGATCAACTTAGATG 59.359 37.037 22.31 6.05 0.00 2.90
560 570 7.707624 AGGCAAATTTGATCAACTTAGATGA 57.292 32.000 22.31 0.00 0.00 2.92
561 571 8.125978 AGGCAAATTTGATCAACTTAGATGAA 57.874 30.769 22.31 0.00 0.00 2.57
562 572 8.587608 AGGCAAATTTGATCAACTTAGATGAAA 58.412 29.630 22.31 0.00 35.98 2.69
563 573 8.866956 GGCAAATTTGATCAACTTAGATGAAAG 58.133 33.333 22.31 0.00 35.22 2.62
564 574 9.415544 GCAAATTTGATCAACTTAGATGAAAGT 57.584 29.630 22.31 0.00 41.46 2.66
568 578 9.918630 ATTTGATCAACTTAGATGAAAGTTTGG 57.081 29.630 7.89 0.00 45.20 3.28
569 579 8.463930 TTGATCAACTTAGATGAAAGTTTGGT 57.536 30.769 3.38 0.00 45.20 3.67
570 580 8.463930 TGATCAACTTAGATGAAAGTTTGGTT 57.536 30.769 0.00 0.00 45.20 3.67
571 581 8.567948 TGATCAACTTAGATGAAAGTTTGGTTC 58.432 33.333 0.00 0.00 45.20 3.62
572 582 7.873719 TCAACTTAGATGAAAGTTTGGTTCA 57.126 32.000 0.00 0.00 45.20 3.18
573 583 8.287439 TCAACTTAGATGAAAGTTTGGTTCAA 57.713 30.769 0.00 0.00 45.20 2.69
574 584 8.912988 TCAACTTAGATGAAAGTTTGGTTCAAT 58.087 29.630 0.00 0.00 45.20 2.57
575 585 9.185192 CAACTTAGATGAAAGTTTGGTTCAATC 57.815 33.333 0.00 0.00 45.20 2.67
576 586 7.886338 ACTTAGATGAAAGTTTGGTTCAATCC 58.114 34.615 0.00 0.00 38.44 3.01
577 587 5.728637 AGATGAAAGTTTGGTTCAATCCC 57.271 39.130 0.00 0.00 38.44 3.85
578 588 4.528206 AGATGAAAGTTTGGTTCAATCCCC 59.472 41.667 0.00 0.00 38.44 4.81
579 589 3.647636 TGAAAGTTTGGTTCAATCCCCA 58.352 40.909 0.00 0.00 32.13 4.96
580 590 3.386402 TGAAAGTTTGGTTCAATCCCCAC 59.614 43.478 0.00 0.00 32.13 4.61
581 591 3.328535 AAGTTTGGTTCAATCCCCACT 57.671 42.857 0.00 0.00 0.00 4.00
582 592 3.328535 AGTTTGGTTCAATCCCCACTT 57.671 42.857 0.00 0.00 0.00 3.16
583 593 3.653164 AGTTTGGTTCAATCCCCACTTT 58.347 40.909 0.00 0.00 0.00 2.66
584 594 4.810345 AGTTTGGTTCAATCCCCACTTTA 58.190 39.130 0.00 0.00 0.00 1.85
585 595 5.212745 AGTTTGGTTCAATCCCCACTTTAA 58.787 37.500 0.00 0.00 0.00 1.52
586 596 5.663556 AGTTTGGTTCAATCCCCACTTTAAA 59.336 36.000 0.00 0.00 0.00 1.52
587 597 5.538849 TTGGTTCAATCCCCACTTTAAAC 57.461 39.130 0.00 0.00 0.00 2.01
588 598 4.547671 TGGTTCAATCCCCACTTTAAACA 58.452 39.130 0.00 0.00 0.00 2.83
589 599 4.962995 TGGTTCAATCCCCACTTTAAACAA 59.037 37.500 0.00 0.00 0.00 2.83
590 600 5.069781 TGGTTCAATCCCCACTTTAAACAAG 59.930 40.000 0.00 0.00 0.00 3.16
591 601 4.864704 TCAATCCCCACTTTAAACAAGC 57.135 40.909 0.00 0.00 0.00 4.01
592 602 3.576550 TCAATCCCCACTTTAAACAAGCC 59.423 43.478 0.00 0.00 0.00 4.35
593 603 2.757894 TCCCCACTTTAAACAAGCCA 57.242 45.000 0.00 0.00 0.00 4.75
594 604 2.312390 TCCCCACTTTAAACAAGCCAC 58.688 47.619 0.00 0.00 0.00 5.01
595 605 2.035632 CCCCACTTTAAACAAGCCACA 58.964 47.619 0.00 0.00 0.00 4.17
596 606 2.632512 CCCCACTTTAAACAAGCCACAT 59.367 45.455 0.00 0.00 0.00 3.21
597 607 3.070878 CCCCACTTTAAACAAGCCACATT 59.929 43.478 0.00 0.00 0.00 2.71
598 608 4.306600 CCCACTTTAAACAAGCCACATTC 58.693 43.478 0.00 0.00 0.00 2.67
599 609 3.980775 CCACTTTAAACAAGCCACATTCG 59.019 43.478 0.00 0.00 0.00 3.34
600 610 3.980775 CACTTTAAACAAGCCACATTCGG 59.019 43.478 0.00 0.00 0.00 4.30
601 611 3.634910 ACTTTAAACAAGCCACATTCGGT 59.365 39.130 0.00 0.00 0.00 4.69
602 612 3.907894 TTAAACAAGCCACATTCGGTC 57.092 42.857 0.00 0.00 0.00 4.79
603 613 0.958822 AAACAAGCCACATTCGGTCC 59.041 50.000 0.00 0.00 0.00 4.46
604 614 0.893727 AACAAGCCACATTCGGTCCC 60.894 55.000 0.00 0.00 0.00 4.46
605 615 2.046314 AAGCCACATTCGGTCCCG 60.046 61.111 0.00 0.00 41.35 5.14
606 616 2.890766 AAGCCACATTCGGTCCCGT 61.891 57.895 5.52 0.00 40.74 5.28
607 617 1.546589 AAGCCACATTCGGTCCCGTA 61.547 55.000 5.52 0.00 40.74 4.02
608 618 1.145377 GCCACATTCGGTCCCGTAT 59.855 57.895 5.52 0.00 40.74 3.06
609 619 0.878961 GCCACATTCGGTCCCGTATC 60.879 60.000 5.52 0.00 40.74 2.24
610 620 0.462375 CCACATTCGGTCCCGTATCA 59.538 55.000 5.52 0.00 40.74 2.15
611 621 1.070134 CCACATTCGGTCCCGTATCAT 59.930 52.381 5.52 0.00 40.74 2.45
612 622 2.297880 CCACATTCGGTCCCGTATCATA 59.702 50.000 5.52 0.00 40.74 2.15
613 623 3.056107 CCACATTCGGTCCCGTATCATAT 60.056 47.826 5.52 0.00 40.74 1.78
614 624 4.158949 CCACATTCGGTCCCGTATCATATA 59.841 45.833 5.52 0.00 40.74 0.86
615 625 5.100259 CACATTCGGTCCCGTATCATATAC 58.900 45.833 5.52 0.00 40.74 1.47
616 626 4.768448 ACATTCGGTCCCGTATCATATACA 59.232 41.667 5.52 0.00 40.74 2.29
617 627 5.421056 ACATTCGGTCCCGTATCATATACAT 59.579 40.000 5.52 0.00 40.74 2.29
618 628 5.988310 TTCGGTCCCGTATCATATACATT 57.012 39.130 5.52 0.00 40.74 2.71
619 629 5.988310 TCGGTCCCGTATCATATACATTT 57.012 39.130 5.52 0.00 40.74 2.32
620 630 7.465353 TTCGGTCCCGTATCATATACATTTA 57.535 36.000 5.52 0.00 40.74 1.40
621 631 7.649533 TCGGTCCCGTATCATATACATTTAT 57.350 36.000 5.52 0.00 40.74 1.40
622 632 8.750515 TCGGTCCCGTATCATATACATTTATA 57.249 34.615 5.52 0.00 40.74 0.98
623 633 9.187996 TCGGTCCCGTATCATATACATTTATAA 57.812 33.333 5.52 0.00 40.74 0.98
624 634 9.806203 CGGTCCCGTATCATATACATTTATAAA 57.194 33.333 0.00 0.00 34.35 1.40
646 656 9.771534 ATAAAGTATGGCAAGATTCTCTTAGAC 57.228 33.333 0.00 0.00 33.78 2.59
647 657 7.430760 AAGTATGGCAAGATTCTCTTAGACT 57.569 36.000 0.00 0.00 33.78 3.24
648 658 7.430760 AGTATGGCAAGATTCTCTTAGACTT 57.569 36.000 0.00 0.00 33.78 3.01
649 659 7.271511 AGTATGGCAAGATTCTCTTAGACTTG 58.728 38.462 0.00 0.00 33.78 3.16
655 665 7.432350 CAAGATTCTCTTAGACTTGCAACTT 57.568 36.000 0.00 0.00 33.78 2.66
656 666 8.539770 CAAGATTCTCTTAGACTTGCAACTTA 57.460 34.615 0.00 0.00 33.78 2.24
657 667 9.160496 CAAGATTCTCTTAGACTTGCAACTTAT 57.840 33.333 0.00 0.00 33.78 1.73
658 668 8.715191 AGATTCTCTTAGACTTGCAACTTATG 57.285 34.615 0.00 0.00 0.00 1.90
659 669 8.535335 AGATTCTCTTAGACTTGCAACTTATGA 58.465 33.333 0.00 0.00 0.00 2.15
660 670 7.891183 TTCTCTTAGACTTGCAACTTATGAC 57.109 36.000 0.00 0.00 0.00 3.06
661 671 7.233389 TCTCTTAGACTTGCAACTTATGACT 57.767 36.000 0.00 0.00 0.00 3.41
662 672 7.316640 TCTCTTAGACTTGCAACTTATGACTC 58.683 38.462 0.00 0.00 0.00 3.36
663 673 7.177568 TCTCTTAGACTTGCAACTTATGACTCT 59.822 37.037 0.00 0.00 0.00 3.24
664 674 7.671302 TCTTAGACTTGCAACTTATGACTCTT 58.329 34.615 0.00 0.00 0.00 2.85
665 675 8.803235 TCTTAGACTTGCAACTTATGACTCTTA 58.197 33.333 0.00 0.00 0.00 2.10
666 676 9.593134 CTTAGACTTGCAACTTATGACTCTTAT 57.407 33.333 0.00 0.00 0.00 1.73
667 677 9.944376 TTAGACTTGCAACTTATGACTCTTATT 57.056 29.630 0.00 0.00 0.00 1.40
668 678 8.854614 AGACTTGCAACTTATGACTCTTATTT 57.145 30.769 0.00 0.00 0.00 1.40
669 679 9.944376 AGACTTGCAACTTATGACTCTTATTTA 57.056 29.630 0.00 0.00 0.00 1.40
1015 1035 2.285180 CTCCCCCTCCTCCTCCTG 59.715 72.222 0.00 0.00 0.00 3.86
1590 2238 4.081406 TGCATTAGAACAATGGCTGAACT 58.919 39.130 0.00 0.00 0.00 3.01
1671 2319 9.154847 GCTAAATTTAGACATTCTTTTTGGCAT 57.845 29.630 26.00 0.00 32.23 4.40
1864 2513 5.128919 GCTAGGGTGAATGACAATCTTGAT 58.871 41.667 0.00 0.00 0.00 2.57
1903 2552 5.338219 CCACCATCTGACAGAAGAGAAGAAT 60.338 44.000 9.70 0.00 0.00 2.40
2309 2958 5.227569 TCAGGTTGTTGATCTGCTTAAGA 57.772 39.130 6.67 0.00 39.94 2.10
2524 3173 8.979574 GTATGCTTGTACTAATGGTGAACTATC 58.020 37.037 0.00 0.00 0.00 2.08
2648 3297 9.448438 GGTTATGTATTGCTATGTATGGATCAA 57.552 33.333 0.00 0.00 0.00 2.57
3069 3722 2.666317 ACAGTTGCACCTTTAAGCCTT 58.334 42.857 0.00 0.00 0.00 4.35
3348 4002 1.171308 GTTGAGCAGTGGCACATCAT 58.829 50.000 21.41 2.10 44.52 2.45
3477 4131 4.129737 CCACGACATCTCCGCCGT 62.130 66.667 0.00 0.00 35.46 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.141482 ACCCCTAAACATGCATAATCGACT 60.141 41.667 0.00 0.00 0.00 4.18
2 3 4.133820 CACCCCTAAACATGCATAATCGA 58.866 43.478 0.00 0.00 0.00 3.59
3 4 3.882888 ACACCCCTAAACATGCATAATCG 59.117 43.478 0.00 0.00 0.00 3.34
4 5 5.852282 AACACCCCTAAACATGCATAATC 57.148 39.130 0.00 0.00 0.00 1.75
5 6 5.719085 TCAAACACCCCTAAACATGCATAAT 59.281 36.000 0.00 0.00 0.00 1.28
53 63 5.049818 TGCCACAAAGTTCAAAAACAAAGTG 60.050 36.000 0.00 0.00 37.88 3.16
54 64 5.059833 TGCCACAAAGTTCAAAAACAAAGT 58.940 33.333 0.00 0.00 37.88 2.66
55 65 5.604010 TGCCACAAAGTTCAAAAACAAAG 57.396 34.783 0.00 0.00 37.88 2.77
56 66 6.038714 AGTTTGCCACAAAGTTCAAAAACAAA 59.961 30.769 0.00 0.00 37.88 2.83
64 74 6.634805 TCAATAAAGTTTGCCACAAAGTTCA 58.365 32.000 12.21 0.57 0.00 3.18
101 111 9.372369 AGCTGAACTTGTTAGAGATGTAATAAC 57.628 33.333 0.00 0.00 0.00 1.89
105 115 8.803235 TCTTAGCTGAACTTGTTAGAGATGTAA 58.197 33.333 0.00 0.00 0.00 2.41
108 118 7.542890 TCTCTTAGCTGAACTTGTTAGAGATG 58.457 38.462 0.00 0.00 0.00 2.90
113 123 8.993121 TGATTTTCTCTTAGCTGAACTTGTTAG 58.007 33.333 0.00 0.00 0.00 2.34
117 127 6.652481 TCCTGATTTTCTCTTAGCTGAACTTG 59.348 38.462 0.00 0.00 0.00 3.16
119 129 6.212388 TCTCCTGATTTTCTCTTAGCTGAACT 59.788 38.462 0.00 0.00 0.00 3.01
120 130 6.402222 TCTCCTGATTTTCTCTTAGCTGAAC 58.598 40.000 0.00 0.00 0.00 3.18
121 131 6.438741 TCTCTCCTGATTTTCTCTTAGCTGAA 59.561 38.462 0.00 0.00 0.00 3.02
122 132 5.954752 TCTCTCCTGATTTTCTCTTAGCTGA 59.045 40.000 0.00 0.00 0.00 4.26
124 134 6.865834 TTCTCTCCTGATTTTCTCTTAGCT 57.134 37.500 0.00 0.00 0.00 3.32
125 135 7.271511 TGATTCTCTCCTGATTTTCTCTTAGC 58.728 38.462 0.00 0.00 0.00 3.09
127 137 8.985922 TGATGATTCTCTCCTGATTTTCTCTTA 58.014 33.333 0.00 0.00 0.00 2.10
129 139 7.434927 TGATGATTCTCTCCTGATTTTCTCT 57.565 36.000 0.00 0.00 0.00 3.10
131 141 7.225725 GGATGATGATTCTCTCCTGATTTTCT 58.774 38.462 0.00 0.00 0.00 2.52
132 142 6.430616 GGGATGATGATTCTCTCCTGATTTTC 59.569 42.308 0.00 0.00 0.00 2.29
135 145 4.912133 TGGGATGATGATTCTCTCCTGATT 59.088 41.667 0.00 0.00 0.00 2.57
136 146 4.500452 TGGGATGATGATTCTCTCCTGAT 58.500 43.478 0.00 0.00 0.00 2.90
137 147 3.932601 TGGGATGATGATTCTCTCCTGA 58.067 45.455 0.00 0.00 0.00 3.86
138 148 4.347292 TCTTGGGATGATGATTCTCTCCTG 59.653 45.833 0.00 0.00 0.00 3.86
139 149 4.564799 TCTTGGGATGATGATTCTCTCCT 58.435 43.478 0.00 0.00 0.00 3.69
140 150 4.970860 TCTTGGGATGATGATTCTCTCC 57.029 45.455 0.00 0.00 0.00 3.71
141 151 7.820578 AATTTCTTGGGATGATGATTCTCTC 57.179 36.000 0.00 0.00 0.00 3.20
143 153 8.455903 TGTAATTTCTTGGGATGATGATTCTC 57.544 34.615 0.00 0.00 0.00 2.87
145 155 8.348507 GTCTGTAATTTCTTGGGATGATGATTC 58.651 37.037 0.00 0.00 0.00 2.52
146 156 8.057623 AGTCTGTAATTTCTTGGGATGATGATT 58.942 33.333 0.00 0.00 0.00 2.57
147 157 7.501559 CAGTCTGTAATTTCTTGGGATGATGAT 59.498 37.037 0.00 0.00 0.00 2.45
148 158 6.825213 CAGTCTGTAATTTCTTGGGATGATGA 59.175 38.462 0.00 0.00 0.00 2.92
149 159 6.600822 ACAGTCTGTAATTTCTTGGGATGATG 59.399 38.462 2.87 0.00 0.00 3.07
150 160 6.600822 CACAGTCTGTAATTTCTTGGGATGAT 59.399 38.462 4.85 0.00 0.00 2.45
151 161 5.939883 CACAGTCTGTAATTTCTTGGGATGA 59.060 40.000 4.85 0.00 0.00 2.92
152 162 5.939883 TCACAGTCTGTAATTTCTTGGGATG 59.060 40.000 4.85 0.00 0.00 3.51
153 163 6.126863 TCACAGTCTGTAATTTCTTGGGAT 57.873 37.500 4.85 0.00 0.00 3.85
154 164 5.560722 TCACAGTCTGTAATTTCTTGGGA 57.439 39.130 4.85 0.00 0.00 4.37
155 165 6.430925 TGATTCACAGTCTGTAATTTCTTGGG 59.569 38.462 4.85 0.00 0.00 4.12
156 166 7.439157 TGATTCACAGTCTGTAATTTCTTGG 57.561 36.000 4.85 0.00 0.00 3.61
157 167 9.734620 TTTTGATTCACAGTCTGTAATTTCTTG 57.265 29.630 4.85 0.00 0.00 3.02
158 168 9.956720 CTTTTGATTCACAGTCTGTAATTTCTT 57.043 29.630 4.85 0.00 0.00 2.52
159 169 9.342308 TCTTTTGATTCACAGTCTGTAATTTCT 57.658 29.630 4.85 0.00 0.00 2.52
160 170 9.387123 GTCTTTTGATTCACAGTCTGTAATTTC 57.613 33.333 4.85 1.80 0.00 2.17
161 171 9.125026 AGTCTTTTGATTCACAGTCTGTAATTT 57.875 29.630 4.85 0.00 0.00 1.82
162 172 8.682936 AGTCTTTTGATTCACAGTCTGTAATT 57.317 30.769 4.85 0.00 0.00 1.40
163 173 8.682936 AAGTCTTTTGATTCACAGTCTGTAAT 57.317 30.769 4.85 6.32 0.00 1.89
164 174 8.506168 AAAGTCTTTTGATTCACAGTCTGTAA 57.494 30.769 4.85 1.62 0.00 2.41
165 175 7.987458 AGAAAGTCTTTTGATTCACAGTCTGTA 59.013 33.333 4.85 0.00 0.00 2.74
166 176 6.825721 AGAAAGTCTTTTGATTCACAGTCTGT 59.174 34.615 0.00 0.00 0.00 3.41
167 177 7.256756 AGAAAGTCTTTTGATTCACAGTCTG 57.743 36.000 0.00 0.00 0.00 3.51
168 178 7.172361 GCTAGAAAGTCTTTTGATTCACAGTCT 59.828 37.037 0.00 0.00 0.00 3.24
169 179 7.172361 AGCTAGAAAGTCTTTTGATTCACAGTC 59.828 37.037 0.00 0.00 0.00 3.51
170 180 6.995091 AGCTAGAAAGTCTTTTGATTCACAGT 59.005 34.615 0.00 0.00 0.00 3.55
171 181 7.432350 AGCTAGAAAGTCTTTTGATTCACAG 57.568 36.000 0.00 0.00 0.00 3.66
172 182 7.807977 AAGCTAGAAAGTCTTTTGATTCACA 57.192 32.000 0.00 0.00 0.00 3.58
173 183 7.114106 GCAAAGCTAGAAAGTCTTTTGATTCAC 59.886 37.037 0.00 0.00 31.17 3.18
174 184 7.141363 GCAAAGCTAGAAAGTCTTTTGATTCA 58.859 34.615 0.00 0.00 31.17 2.57
175 185 6.584184 GGCAAAGCTAGAAAGTCTTTTGATTC 59.416 38.462 0.00 0.00 31.17 2.52
176 186 6.266330 AGGCAAAGCTAGAAAGTCTTTTGATT 59.734 34.615 0.00 0.00 31.17 2.57
177 187 5.772169 AGGCAAAGCTAGAAAGTCTTTTGAT 59.228 36.000 0.00 0.00 31.17 2.57
178 188 5.133221 AGGCAAAGCTAGAAAGTCTTTTGA 58.867 37.500 0.00 0.00 31.17 2.69
179 189 5.444663 AGGCAAAGCTAGAAAGTCTTTTG 57.555 39.130 0.00 0.00 31.17 2.44
180 190 6.322456 AGAAAGGCAAAGCTAGAAAGTCTTTT 59.678 34.615 0.00 0.00 31.17 2.27
181 191 5.830457 AGAAAGGCAAAGCTAGAAAGTCTTT 59.170 36.000 0.00 0.00 32.68 2.52
182 192 5.380900 AGAAAGGCAAAGCTAGAAAGTCTT 58.619 37.500 0.00 0.00 0.00 3.01
183 193 4.979335 AGAAAGGCAAAGCTAGAAAGTCT 58.021 39.130 0.00 0.00 0.00 3.24
184 194 5.456265 CAAGAAAGGCAAAGCTAGAAAGTC 58.544 41.667 0.00 0.00 0.00 3.01
185 195 4.279420 CCAAGAAAGGCAAAGCTAGAAAGT 59.721 41.667 0.00 0.00 0.00 2.66
186 196 4.279420 ACCAAGAAAGGCAAAGCTAGAAAG 59.721 41.667 0.00 0.00 0.00 2.62
187 197 4.215109 ACCAAGAAAGGCAAAGCTAGAAA 58.785 39.130 0.00 0.00 0.00 2.52
188 198 3.821033 GACCAAGAAAGGCAAAGCTAGAA 59.179 43.478 0.00 0.00 0.00 2.10
189 199 3.412386 GACCAAGAAAGGCAAAGCTAGA 58.588 45.455 0.00 0.00 0.00 2.43
190 200 2.489722 GGACCAAGAAAGGCAAAGCTAG 59.510 50.000 0.00 0.00 0.00 3.42
191 201 2.158534 TGGACCAAGAAAGGCAAAGCTA 60.159 45.455 0.00 0.00 0.00 3.32
192 202 1.332195 GGACCAAGAAAGGCAAAGCT 58.668 50.000 0.00 0.00 0.00 3.74
193 203 1.039856 TGGACCAAGAAAGGCAAAGC 58.960 50.000 0.00 0.00 0.00 3.51
194 204 2.546584 GCTTGGACCAAGAAAGGCAAAG 60.547 50.000 33.92 8.19 43.42 2.77
195 205 1.412343 GCTTGGACCAAGAAAGGCAAA 59.588 47.619 33.92 0.00 43.42 3.68
196 206 1.039856 GCTTGGACCAAGAAAGGCAA 58.960 50.000 33.92 0.00 43.42 4.52
197 207 0.106268 TGCTTGGACCAAGAAAGGCA 60.106 50.000 33.92 23.05 43.42 4.75
198 208 0.315251 GTGCTTGGACCAAGAAAGGC 59.685 55.000 33.92 20.86 43.42 4.35
199 209 0.593128 CGTGCTTGGACCAAGAAAGG 59.407 55.000 33.92 22.10 43.42 3.11
200 210 1.532868 CTCGTGCTTGGACCAAGAAAG 59.467 52.381 33.92 26.54 43.42 2.62
201 211 1.593196 CTCGTGCTTGGACCAAGAAA 58.407 50.000 33.92 19.79 43.42 2.52
202 212 0.250295 CCTCGTGCTTGGACCAAGAA 60.250 55.000 33.92 24.00 43.42 2.52
203 213 1.371183 CCTCGTGCTTGGACCAAGA 59.629 57.895 33.92 17.95 43.42 3.02
204 214 0.951040 GACCTCGTGCTTGGACCAAG 60.951 60.000 27.16 27.16 43.57 3.61
205 215 1.070786 GACCTCGTGCTTGGACCAA 59.929 57.895 6.76 6.76 0.00 3.67
206 216 1.407656 AAGACCTCGTGCTTGGACCA 61.408 55.000 0.00 0.00 0.00 4.02
207 217 0.670854 GAAGACCTCGTGCTTGGACC 60.671 60.000 0.00 0.00 0.00 4.46
208 218 0.033504 TGAAGACCTCGTGCTTGGAC 59.966 55.000 0.00 0.00 0.00 4.02
209 219 0.756294 TTGAAGACCTCGTGCTTGGA 59.244 50.000 0.00 0.00 0.00 3.53
210 220 1.813513 ATTGAAGACCTCGTGCTTGG 58.186 50.000 0.00 0.00 0.00 3.61
211 221 3.070018 AGAATTGAAGACCTCGTGCTTG 58.930 45.455 0.00 0.00 0.00 4.01
212 222 3.409026 AGAATTGAAGACCTCGTGCTT 57.591 42.857 0.00 0.00 0.00 3.91
213 223 3.409026 AAGAATTGAAGACCTCGTGCT 57.591 42.857 0.00 0.00 0.00 4.40
214 224 4.222114 CAAAAGAATTGAAGACCTCGTGC 58.778 43.478 0.00 0.00 0.00 5.34
215 225 5.424121 ACAAAAGAATTGAAGACCTCGTG 57.576 39.130 0.00 0.00 0.00 4.35
216 226 5.469084 GGTACAAAAGAATTGAAGACCTCGT 59.531 40.000 0.00 0.00 0.00 4.18
217 227 5.468746 TGGTACAAAAGAATTGAAGACCTCG 59.531 40.000 0.00 0.00 31.92 4.63
218 228 6.877611 TGGTACAAAAGAATTGAAGACCTC 57.122 37.500 0.00 0.00 31.92 3.85
235 245 7.788026 ACGTGGATCTAGAATTTATTGGTACA 58.212 34.615 0.00 0.00 0.00 2.90
236 246 8.658499 AACGTGGATCTAGAATTTATTGGTAC 57.342 34.615 0.00 0.00 0.00 3.34
237 247 9.675464 AAAACGTGGATCTAGAATTTATTGGTA 57.325 29.630 0.00 0.00 0.00 3.25
238 248 8.575649 AAAACGTGGATCTAGAATTTATTGGT 57.424 30.769 0.00 0.00 0.00 3.67
261 271 0.949588 CATGCATGTGGCCGCAAAAA 60.950 50.000 25.33 11.87 42.37 1.94
262 272 1.374378 CATGCATGTGGCCGCAAAA 60.374 52.632 25.33 12.27 42.37 2.44
263 273 1.813728 TTCATGCATGTGGCCGCAAA 61.814 50.000 25.33 12.66 42.37 3.68
264 274 2.273912 TTCATGCATGTGGCCGCAA 61.274 52.632 25.33 7.47 42.37 4.85
265 275 2.675772 TTCATGCATGTGGCCGCA 60.676 55.556 23.66 23.66 43.89 5.69
266 276 2.202650 GTTCATGCATGTGGCCGC 60.203 61.111 25.43 10.11 43.89 6.53
267 277 0.244450 AAAGTTCATGCATGTGGCCG 59.756 50.000 25.43 0.00 43.89 6.13
268 278 2.493278 AGTAAAGTTCATGCATGTGGCC 59.507 45.455 25.43 12.01 43.89 5.36
269 279 3.428045 GGAGTAAAGTTCATGCATGTGGC 60.428 47.826 25.43 16.09 45.13 5.01
270 280 3.758023 TGGAGTAAAGTTCATGCATGTGG 59.242 43.478 25.43 0.94 0.00 4.17
271 281 5.571784 ATGGAGTAAAGTTCATGCATGTG 57.428 39.130 25.43 3.46 0.00 3.21
272 282 6.317140 CACTATGGAGTAAAGTTCATGCATGT 59.683 38.462 25.43 9.20 33.32 3.21
273 283 6.539826 TCACTATGGAGTAAAGTTCATGCATG 59.460 38.462 21.07 21.07 33.32 4.06
274 284 6.540189 GTCACTATGGAGTAAAGTTCATGCAT 59.460 38.462 0.00 0.00 33.32 3.96
275 285 5.874810 GTCACTATGGAGTAAAGTTCATGCA 59.125 40.000 0.00 0.00 33.32 3.96
276 286 5.294552 GGTCACTATGGAGTAAAGTTCATGC 59.705 44.000 0.00 0.00 33.32 4.06
277 287 6.406370 TGGTCACTATGGAGTAAAGTTCATG 58.594 40.000 0.00 0.00 33.32 3.07
278 288 6.620877 TGGTCACTATGGAGTAAAGTTCAT 57.379 37.500 0.00 0.00 33.32 2.57
279 289 5.568825 GCTGGTCACTATGGAGTAAAGTTCA 60.569 44.000 0.00 0.00 33.32 3.18
280 290 4.870991 GCTGGTCACTATGGAGTAAAGTTC 59.129 45.833 0.00 0.00 33.32 3.01
281 291 4.620803 CGCTGGTCACTATGGAGTAAAGTT 60.621 45.833 0.00 0.00 33.32 2.66
282 292 3.119101 CGCTGGTCACTATGGAGTAAAGT 60.119 47.826 0.00 0.00 33.32 2.66
283 293 3.448686 CGCTGGTCACTATGGAGTAAAG 58.551 50.000 0.00 0.00 33.32 1.85
284 294 2.418197 GCGCTGGTCACTATGGAGTAAA 60.418 50.000 0.00 0.00 33.32 2.01
285 295 1.136305 GCGCTGGTCACTATGGAGTAA 59.864 52.381 0.00 0.00 33.32 2.24
286 296 0.744874 GCGCTGGTCACTATGGAGTA 59.255 55.000 0.00 0.00 33.32 2.59
287 297 1.517832 GCGCTGGTCACTATGGAGT 59.482 57.895 0.00 0.00 35.80 3.85
288 298 1.227380 GGCGCTGGTCACTATGGAG 60.227 63.158 7.64 0.00 0.00 3.86
289 299 1.960040 CTGGCGCTGGTCACTATGGA 61.960 60.000 7.64 0.00 0.00 3.41
290 300 1.522355 CTGGCGCTGGTCACTATGG 60.522 63.158 7.64 0.00 0.00 2.74
291 301 1.522355 CCTGGCGCTGGTCACTATG 60.522 63.158 7.64 0.00 0.00 2.23
292 302 1.264749 TTCCTGGCGCTGGTCACTAT 61.265 55.000 7.64 0.00 0.00 2.12
293 303 1.476845 TTTCCTGGCGCTGGTCACTA 61.477 55.000 7.64 0.00 0.00 2.74
294 304 2.818169 TTTCCTGGCGCTGGTCACT 61.818 57.895 7.64 0.00 0.00 3.41
295 305 2.281484 TTTCCTGGCGCTGGTCAC 60.281 61.111 7.64 0.00 0.00 3.67
296 306 2.281484 GTTTCCTGGCGCTGGTCA 60.281 61.111 7.64 0.00 0.00 4.02
297 307 2.032681 AGTTTCCTGGCGCTGGTC 59.967 61.111 7.64 6.03 0.00 4.02
298 308 2.281761 CAGTTTCCTGGCGCTGGT 60.282 61.111 7.64 0.00 34.90 4.00
312 322 3.454812 ACAACCAAACTGAGTACTCCAGT 59.545 43.478 20.11 18.38 45.88 4.00
313 323 4.058817 GACAACCAAACTGAGTACTCCAG 58.941 47.826 20.11 17.80 37.64 3.86
314 324 3.491964 CGACAACCAAACTGAGTACTCCA 60.492 47.826 20.11 7.53 0.00 3.86
315 325 3.057734 CGACAACCAAACTGAGTACTCC 58.942 50.000 20.11 3.06 0.00 3.85
316 326 2.475487 GCGACAACCAAACTGAGTACTC 59.525 50.000 16.32 16.32 0.00 2.59
317 327 2.102588 AGCGACAACCAAACTGAGTACT 59.897 45.455 0.00 0.00 0.00 2.73
318 328 2.221055 CAGCGACAACCAAACTGAGTAC 59.779 50.000 0.00 0.00 0.00 2.73
319 329 2.479837 CAGCGACAACCAAACTGAGTA 58.520 47.619 0.00 0.00 0.00 2.59
320 330 1.299541 CAGCGACAACCAAACTGAGT 58.700 50.000 0.00 0.00 0.00 3.41
321 331 0.588252 CCAGCGACAACCAAACTGAG 59.412 55.000 0.00 0.00 0.00 3.35
322 332 0.107410 ACCAGCGACAACCAAACTGA 60.107 50.000 0.00 0.00 0.00 3.41
323 333 0.029300 CACCAGCGACAACCAAACTG 59.971 55.000 0.00 0.00 0.00 3.16
324 334 1.724582 GCACCAGCGACAACCAAACT 61.725 55.000 0.00 0.00 0.00 2.66
325 335 1.299089 GCACCAGCGACAACCAAAC 60.299 57.895 0.00 0.00 0.00 2.93
326 336 1.750780 TGCACCAGCGACAACCAAA 60.751 52.632 0.00 0.00 46.23 3.28
327 337 2.124529 TGCACCAGCGACAACCAA 60.125 55.556 0.00 0.00 46.23 3.67
328 338 2.899838 GTGCACCAGCGACAACCA 60.900 61.111 5.22 0.00 46.23 3.67
329 339 0.953471 TATGTGCACCAGCGACAACC 60.953 55.000 15.69 0.00 46.23 3.77
330 340 0.165944 GTATGTGCACCAGCGACAAC 59.834 55.000 15.69 0.00 46.23 3.32
331 341 0.953471 GGTATGTGCACCAGCGACAA 60.953 55.000 15.69 0.00 46.23 3.18
332 342 1.375396 GGTATGTGCACCAGCGACA 60.375 57.895 15.69 0.00 46.23 4.35
333 343 1.375396 TGGTATGTGCACCAGCGAC 60.375 57.895 15.69 4.84 43.76 5.19
334 344 3.064416 TGGTATGTGCACCAGCGA 58.936 55.556 15.69 0.00 43.76 4.93
339 349 6.697395 TGTATATAGACATGGTATGTGCACC 58.303 40.000 15.69 0.00 45.03 5.01
340 350 7.378966 ACTGTATATAGACATGGTATGTGCAC 58.621 38.462 10.75 10.75 45.03 4.57
341 351 7.539034 ACTGTATATAGACATGGTATGTGCA 57.461 36.000 0.00 1.70 45.03 4.57
342 352 8.740906 AGTACTGTATATAGACATGGTATGTGC 58.259 37.037 0.00 0.00 45.03 4.57
345 355 9.462606 TGGAGTACTGTATATAGACATGGTATG 57.537 37.037 0.00 0.00 0.00 2.39
346 356 9.688091 CTGGAGTACTGTATATAGACATGGTAT 57.312 37.037 0.00 0.00 0.00 2.73
347 357 8.887393 TCTGGAGTACTGTATATAGACATGGTA 58.113 37.037 0.00 0.00 0.00 3.25
348 358 7.666388 GTCTGGAGTACTGTATATAGACATGGT 59.334 40.741 0.00 0.00 34.86 3.55
349 359 7.148390 CGTCTGGAGTACTGTATATAGACATGG 60.148 44.444 0.00 0.00 34.51 3.66
350 360 7.388224 ACGTCTGGAGTACTGTATATAGACATG 59.612 40.741 0.00 0.00 34.51 3.21
351 361 7.451732 ACGTCTGGAGTACTGTATATAGACAT 58.548 38.462 0.00 0.00 34.51 3.06
352 362 6.824553 ACGTCTGGAGTACTGTATATAGACA 58.175 40.000 0.00 0.00 34.51 3.41
353 363 9.086336 GATACGTCTGGAGTACTGTATATAGAC 57.914 40.741 0.00 4.19 0.00 2.59
354 364 9.033711 AGATACGTCTGGAGTACTGTATATAGA 57.966 37.037 0.00 0.00 32.13 1.98
355 365 9.656040 AAGATACGTCTGGAGTACTGTATATAG 57.344 37.037 0.00 0.00 34.13 1.31
356 366 9.650539 GAAGATACGTCTGGAGTACTGTATATA 57.349 37.037 0.00 0.00 34.13 0.86
357 367 8.155510 TGAAGATACGTCTGGAGTACTGTATAT 58.844 37.037 0.00 0.00 34.13 0.86
358 368 7.503549 TGAAGATACGTCTGGAGTACTGTATA 58.496 38.462 0.00 0.00 34.13 1.47
359 369 6.354938 TGAAGATACGTCTGGAGTACTGTAT 58.645 40.000 0.00 0.04 34.13 2.29
360 370 5.737860 TGAAGATACGTCTGGAGTACTGTA 58.262 41.667 0.00 0.00 34.13 2.74
361 371 4.586884 TGAAGATACGTCTGGAGTACTGT 58.413 43.478 0.00 0.00 34.13 3.55
362 372 5.562506 TTGAAGATACGTCTGGAGTACTG 57.437 43.478 0.00 0.00 34.13 2.74
363 373 5.475909 TGTTTGAAGATACGTCTGGAGTACT 59.524 40.000 0.00 0.00 34.13 2.73
364 374 5.706916 TGTTTGAAGATACGTCTGGAGTAC 58.293 41.667 0.00 0.00 34.13 2.73
365 375 5.970317 TGTTTGAAGATACGTCTGGAGTA 57.030 39.130 0.00 0.00 34.13 2.59
366 376 4.866508 TGTTTGAAGATACGTCTGGAGT 57.133 40.909 0.00 0.00 34.13 3.85
367 377 6.368791 TCAATTGTTTGAAGATACGTCTGGAG 59.631 38.462 5.13 0.00 38.90 3.86
368 378 6.227522 TCAATTGTTTGAAGATACGTCTGGA 58.772 36.000 5.13 0.00 38.90 3.86
369 379 6.402550 CCTCAATTGTTTGAAGATACGTCTGG 60.403 42.308 5.13 0.00 41.22 3.86
370 380 6.147821 ACCTCAATTGTTTGAAGATACGTCTG 59.852 38.462 5.13 0.00 41.22 3.51
371 381 6.231211 ACCTCAATTGTTTGAAGATACGTCT 58.769 36.000 5.13 0.00 41.22 4.18
372 382 6.481954 ACCTCAATTGTTTGAAGATACGTC 57.518 37.500 5.13 0.00 41.22 4.34
373 383 7.822334 TGATACCTCAATTGTTTGAAGATACGT 59.178 33.333 5.13 0.00 41.22 3.57
374 384 8.116753 GTGATACCTCAATTGTTTGAAGATACG 58.883 37.037 5.13 0.00 41.22 3.06
375 385 8.116753 CGTGATACCTCAATTGTTTGAAGATAC 58.883 37.037 5.13 0.00 41.22 2.24
376 386 7.822334 ACGTGATACCTCAATTGTTTGAAGATA 59.178 33.333 5.13 0.00 41.22 1.98
377 387 6.655003 ACGTGATACCTCAATTGTTTGAAGAT 59.345 34.615 5.13 0.00 41.22 2.40
378 388 5.995282 ACGTGATACCTCAATTGTTTGAAGA 59.005 36.000 5.13 0.00 41.22 2.87
379 389 6.073276 TGACGTGATACCTCAATTGTTTGAAG 60.073 38.462 5.13 0.00 41.22 3.02
380 390 5.760743 TGACGTGATACCTCAATTGTTTGAA 59.239 36.000 5.13 0.00 41.22 2.69
381 391 5.178623 GTGACGTGATACCTCAATTGTTTGA 59.821 40.000 5.13 0.00 39.54 2.69
382 392 5.382303 GTGACGTGATACCTCAATTGTTTG 58.618 41.667 5.13 0.00 31.85 2.93
383 393 4.454504 GGTGACGTGATACCTCAATTGTTT 59.545 41.667 5.13 0.00 34.11 2.83
384 394 4.000988 GGTGACGTGATACCTCAATTGTT 58.999 43.478 5.13 0.00 34.11 2.83
385 395 3.260884 AGGTGACGTGATACCTCAATTGT 59.739 43.478 5.13 0.00 43.69 2.71
386 396 3.861840 AGGTGACGTGATACCTCAATTG 58.138 45.455 9.33 0.00 43.69 2.32
387 397 4.553330 AAGGTGACGTGATACCTCAATT 57.447 40.909 14.12 0.00 46.28 2.32
388 398 4.504858 GAAAGGTGACGTGATACCTCAAT 58.495 43.478 14.12 6.19 46.28 2.57
389 399 3.306502 GGAAAGGTGACGTGATACCTCAA 60.307 47.826 14.12 0.00 46.28 3.02
390 400 2.232941 GGAAAGGTGACGTGATACCTCA 59.767 50.000 14.12 0.00 46.28 3.86
391 401 2.496470 AGGAAAGGTGACGTGATACCTC 59.504 50.000 14.12 5.46 46.28 3.85
393 403 2.028385 ACAGGAAAGGTGACGTGATACC 60.028 50.000 0.00 0.00 37.23 2.73
394 404 3.056749 AGACAGGAAAGGTGACGTGATAC 60.057 47.826 0.00 0.00 0.00 2.24
395 405 3.162666 AGACAGGAAAGGTGACGTGATA 58.837 45.455 0.00 0.00 0.00 2.15
396 406 1.971357 AGACAGGAAAGGTGACGTGAT 59.029 47.619 0.00 0.00 0.00 3.06
397 407 1.410004 AGACAGGAAAGGTGACGTGA 58.590 50.000 0.00 0.00 0.00 4.35
398 408 1.867233 CAAGACAGGAAAGGTGACGTG 59.133 52.381 0.00 0.00 0.00 4.49
399 409 1.810412 GCAAGACAGGAAAGGTGACGT 60.810 52.381 0.00 0.00 0.00 4.34
400 410 0.868406 GCAAGACAGGAAAGGTGACG 59.132 55.000 0.00 0.00 0.00 4.35
401 411 1.239347 GGCAAGACAGGAAAGGTGAC 58.761 55.000 0.00 0.00 0.00 3.67
402 412 0.250295 CGGCAAGACAGGAAAGGTGA 60.250 55.000 0.00 0.00 0.00 4.02
403 413 1.856265 GCGGCAAGACAGGAAAGGTG 61.856 60.000 0.00 0.00 0.00 4.00
404 414 1.600916 GCGGCAAGACAGGAAAGGT 60.601 57.895 0.00 0.00 0.00 3.50
405 415 1.600636 TGCGGCAAGACAGGAAAGG 60.601 57.895 0.00 0.00 0.00 3.11
406 416 1.165907 TGTGCGGCAAGACAGGAAAG 61.166 55.000 3.23 0.00 0.00 2.62
407 417 0.749818 TTGTGCGGCAAGACAGGAAA 60.750 50.000 3.23 0.00 32.52 3.13
408 418 0.537143 ATTGTGCGGCAAGACAGGAA 60.537 50.000 3.23 0.00 40.86 3.36
409 419 0.537143 AATTGTGCGGCAAGACAGGA 60.537 50.000 3.23 0.00 40.86 3.86
410 420 0.109597 GAATTGTGCGGCAAGACAGG 60.110 55.000 3.23 0.00 40.86 4.00
411 421 0.877071 AGAATTGTGCGGCAAGACAG 59.123 50.000 3.23 0.00 40.86 3.51
412 422 0.874390 GAGAATTGTGCGGCAAGACA 59.126 50.000 3.23 0.00 40.86 3.41
413 423 0.169009 GGAGAATTGTGCGGCAAGAC 59.831 55.000 3.23 0.00 40.86 3.01
414 424 0.250684 TGGAGAATTGTGCGGCAAGA 60.251 50.000 3.23 0.00 40.86 3.02
415 425 0.169672 CTGGAGAATTGTGCGGCAAG 59.830 55.000 3.23 0.00 40.86 4.01
416 426 0.537143 ACTGGAGAATTGTGCGGCAA 60.537 50.000 3.23 0.00 41.89 4.52
417 427 0.537143 AACTGGAGAATTGTGCGGCA 60.537 50.000 0.00 0.00 0.00 5.69
418 428 0.598065 AAACTGGAGAATTGTGCGGC 59.402 50.000 2.62 0.00 0.00 6.53
419 429 2.159517 GCTAAACTGGAGAATTGTGCGG 60.160 50.000 1.07 1.07 0.00 5.69
420 430 2.159517 GGCTAAACTGGAGAATTGTGCG 60.160 50.000 0.00 0.00 0.00 5.34
421 431 2.164422 GGGCTAAACTGGAGAATTGTGC 59.836 50.000 0.00 0.00 0.00 4.57
422 432 3.420893 TGGGCTAAACTGGAGAATTGTG 58.579 45.455 0.00 0.00 0.00 3.33
423 433 3.806949 TGGGCTAAACTGGAGAATTGT 57.193 42.857 0.00 0.00 0.00 2.71
424 434 8.463930 TTTATATGGGCTAAACTGGAGAATTG 57.536 34.615 0.00 0.00 0.00 2.32
425 435 9.301897 GATTTATATGGGCTAAACTGGAGAATT 57.698 33.333 0.00 0.00 0.00 2.17
426 436 7.890655 GGATTTATATGGGCTAAACTGGAGAAT 59.109 37.037 0.00 0.00 0.00 2.40
427 437 7.073725 AGGATTTATATGGGCTAAACTGGAGAA 59.926 37.037 0.00 0.00 0.00 2.87
428 438 6.562608 AGGATTTATATGGGCTAAACTGGAGA 59.437 38.462 0.00 0.00 0.00 3.71
429 439 6.784031 AGGATTTATATGGGCTAAACTGGAG 58.216 40.000 0.00 0.00 0.00 3.86
430 440 6.240176 GGAGGATTTATATGGGCTAAACTGGA 60.240 42.308 0.00 0.00 0.00 3.86
431 441 5.946377 GGAGGATTTATATGGGCTAAACTGG 59.054 44.000 0.00 0.00 0.00 4.00
432 442 6.542821 TGGAGGATTTATATGGGCTAAACTG 58.457 40.000 0.00 0.00 0.00 3.16
433 443 6.780198 TGGAGGATTTATATGGGCTAAACT 57.220 37.500 0.00 0.00 0.00 2.66
434 444 7.004691 AGTTGGAGGATTTATATGGGCTAAAC 58.995 38.462 0.00 0.00 0.00 2.01
435 445 7.161715 AGTTGGAGGATTTATATGGGCTAAA 57.838 36.000 0.00 0.00 0.00 1.85
436 446 6.780198 AGTTGGAGGATTTATATGGGCTAA 57.220 37.500 0.00 0.00 0.00 3.09
437 447 6.562608 AGAAGTTGGAGGATTTATATGGGCTA 59.437 38.462 0.00 0.00 0.00 3.93
438 448 5.373854 AGAAGTTGGAGGATTTATATGGGCT 59.626 40.000 0.00 0.00 0.00 5.19
439 449 5.635120 AGAAGTTGGAGGATTTATATGGGC 58.365 41.667 0.00 0.00 0.00 5.36
440 450 7.084268 AGAGAAGTTGGAGGATTTATATGGG 57.916 40.000 0.00 0.00 0.00 4.00
445 455 9.218525 TCTGAATAGAGAAGTTGGAGGATTTAT 57.781 33.333 0.00 0.00 0.00 1.40
446 456 8.609617 TCTGAATAGAGAAGTTGGAGGATTTA 57.390 34.615 0.00 0.00 0.00 1.40
447 457 7.502060 TCTGAATAGAGAAGTTGGAGGATTT 57.498 36.000 0.00 0.00 0.00 2.17
448 458 7.502060 TTCTGAATAGAGAAGTTGGAGGATT 57.498 36.000 0.00 0.00 33.70 3.01
449 459 7.123355 CTTCTGAATAGAGAAGTTGGAGGAT 57.877 40.000 0.00 0.00 42.77 3.24
450 460 6.537453 CTTCTGAATAGAGAAGTTGGAGGA 57.463 41.667 0.00 0.00 42.77 3.71
459 469 4.774726 AGGTCTGCACTTCTGAATAGAGAA 59.225 41.667 0.00 0.00 33.70 2.87
460 470 4.348486 AGGTCTGCACTTCTGAATAGAGA 58.652 43.478 0.00 0.00 33.70 3.10
461 471 4.734398 AGGTCTGCACTTCTGAATAGAG 57.266 45.455 0.00 0.00 33.70 2.43
462 472 4.646945 CCTAGGTCTGCACTTCTGAATAGA 59.353 45.833 0.00 0.00 0.00 1.98
463 473 4.202202 CCCTAGGTCTGCACTTCTGAATAG 60.202 50.000 8.29 0.00 0.00 1.73
464 474 3.706594 CCCTAGGTCTGCACTTCTGAATA 59.293 47.826 8.29 0.00 0.00 1.75
465 475 2.503356 CCCTAGGTCTGCACTTCTGAAT 59.497 50.000 8.29 0.00 0.00 2.57
466 476 1.902508 CCCTAGGTCTGCACTTCTGAA 59.097 52.381 8.29 0.00 0.00 3.02
467 477 1.561643 CCCTAGGTCTGCACTTCTGA 58.438 55.000 8.29 0.00 0.00 3.27
468 478 0.539051 CCCCTAGGTCTGCACTTCTG 59.461 60.000 8.29 0.00 0.00 3.02
469 479 1.268283 GCCCCTAGGTCTGCACTTCT 61.268 60.000 8.29 0.00 34.57 2.85
470 480 1.222113 GCCCCTAGGTCTGCACTTC 59.778 63.158 8.29 0.00 34.57 3.01
471 481 0.042731 TAGCCCCTAGGTCTGCACTT 59.957 55.000 8.29 0.00 34.57 3.16
472 482 0.266152 ATAGCCCCTAGGTCTGCACT 59.734 55.000 8.29 0.00 34.57 4.40
473 483 1.132500 AATAGCCCCTAGGTCTGCAC 58.868 55.000 8.29 0.00 34.57 4.57
474 484 1.893315 AAATAGCCCCTAGGTCTGCA 58.107 50.000 8.29 0.00 34.57 4.41
475 485 2.092375 ACAAAATAGCCCCTAGGTCTGC 60.092 50.000 8.29 7.54 34.57 4.26
476 486 3.933861 ACAAAATAGCCCCTAGGTCTG 57.066 47.619 8.29 0.00 34.57 3.51
477 487 4.291249 TCAAACAAAATAGCCCCTAGGTCT 59.709 41.667 8.29 7.02 34.57 3.85
478 488 4.595986 TCAAACAAAATAGCCCCTAGGTC 58.404 43.478 8.29 0.00 34.57 3.85
479 489 4.291249 TCTCAAACAAAATAGCCCCTAGGT 59.709 41.667 8.29 0.00 34.57 3.08
480 490 4.640647 GTCTCAAACAAAATAGCCCCTAGG 59.359 45.833 0.06 0.06 0.00 3.02
481 491 5.501156 AGTCTCAAACAAAATAGCCCCTAG 58.499 41.667 0.00 0.00 0.00 3.02
482 492 5.514500 AGTCTCAAACAAAATAGCCCCTA 57.486 39.130 0.00 0.00 0.00 3.53
483 493 4.388577 AGTCTCAAACAAAATAGCCCCT 57.611 40.909 0.00 0.00 0.00 4.79
484 494 6.584185 TTTAGTCTCAAACAAAATAGCCCC 57.416 37.500 0.00 0.00 0.00 5.80
485 495 8.925700 CAAATTTAGTCTCAAACAAAATAGCCC 58.074 33.333 0.00 0.00 0.00 5.19
486 496 9.476202 ACAAATTTAGTCTCAAACAAAATAGCC 57.524 29.630 0.00 0.00 0.00 3.93
496 506 9.677567 GCAACATTAGACAAATTTAGTCTCAAA 57.322 29.630 19.74 13.37 44.70 2.69
497 507 8.296713 GGCAACATTAGACAAATTTAGTCTCAA 58.703 33.333 19.74 14.63 44.70 3.02
498 508 7.446931 TGGCAACATTAGACAAATTTAGTCTCA 59.553 33.333 19.74 13.31 43.53 3.27
499 509 7.816640 TGGCAACATTAGACAAATTTAGTCTC 58.183 34.615 19.74 9.17 43.53 3.36
500 510 7.759489 TGGCAACATTAGACAAATTTAGTCT 57.241 32.000 19.93 19.93 46.17 3.24
518 528 1.802365 CCTACGGTTAAGTGTGGCAAC 59.198 52.381 0.00 0.00 0.00 4.17
519 529 1.878948 GCCTACGGTTAAGTGTGGCAA 60.879 52.381 0.00 0.00 41.37 4.52
520 530 0.320946 GCCTACGGTTAAGTGTGGCA 60.321 55.000 0.00 0.00 41.37 4.92
521 531 0.320946 TGCCTACGGTTAAGTGTGGC 60.321 55.000 0.00 0.00 41.76 5.01
522 532 2.172851 TTGCCTACGGTTAAGTGTGG 57.827 50.000 0.00 0.00 0.00 4.17
523 533 4.759516 AATTTGCCTACGGTTAAGTGTG 57.240 40.909 0.00 0.00 0.00 3.82
524 534 4.822896 TCAAATTTGCCTACGGTTAAGTGT 59.177 37.500 13.54 0.00 0.00 3.55
525 535 5.365403 TCAAATTTGCCTACGGTTAAGTG 57.635 39.130 13.54 0.00 0.00 3.16
526 536 5.708230 TGATCAAATTTGCCTACGGTTAAGT 59.292 36.000 13.54 0.00 0.00 2.24
527 537 6.189677 TGATCAAATTTGCCTACGGTTAAG 57.810 37.500 13.54 0.00 0.00 1.85
528 538 6.207810 AGTTGATCAAATTTGCCTACGGTTAA 59.792 34.615 10.35 0.00 0.00 2.01
529 539 5.708230 AGTTGATCAAATTTGCCTACGGTTA 59.292 36.000 10.35 0.00 0.00 2.85
530 540 4.522789 AGTTGATCAAATTTGCCTACGGTT 59.477 37.500 10.35 0.00 0.00 4.44
531 541 4.079253 AGTTGATCAAATTTGCCTACGGT 58.921 39.130 10.35 0.00 0.00 4.83
532 542 4.701956 AGTTGATCAAATTTGCCTACGG 57.298 40.909 10.35 0.00 0.00 4.02
533 543 7.072177 TCTAAGTTGATCAAATTTGCCTACG 57.928 36.000 24.43 6.92 30.75 3.51
534 544 8.677300 TCATCTAAGTTGATCAAATTTGCCTAC 58.323 33.333 24.43 13.18 30.75 3.18
535 545 8.806429 TCATCTAAGTTGATCAAATTTGCCTA 57.194 30.769 24.43 8.97 30.75 3.93
536 546 7.707624 TCATCTAAGTTGATCAAATTTGCCT 57.292 32.000 24.43 11.44 30.75 4.75
537 547 8.761575 TTTCATCTAAGTTGATCAAATTTGCC 57.238 30.769 24.43 4.99 30.75 4.52
538 548 9.415544 ACTTTCATCTAAGTTGATCAAATTTGC 57.584 29.630 24.43 5.71 34.81 3.68
542 552 9.918630 CCAAACTTTCATCTAAGTTGATCAAAT 57.081 29.630 10.35 6.06 45.13 2.32
543 553 8.912988 ACCAAACTTTCATCTAAGTTGATCAAA 58.087 29.630 10.35 0.00 45.13 2.69
544 554 8.463930 ACCAAACTTTCATCTAAGTTGATCAA 57.536 30.769 3.38 3.38 45.13 2.57
545 555 8.463930 AACCAAACTTTCATCTAAGTTGATCA 57.536 30.769 0.00 0.00 45.13 2.92
546 556 8.567948 TGAACCAAACTTTCATCTAAGTTGATC 58.432 33.333 2.83 0.00 45.13 2.92
547 557 8.463930 TGAACCAAACTTTCATCTAAGTTGAT 57.536 30.769 2.83 0.00 45.13 2.57
548 558 7.873719 TGAACCAAACTTTCATCTAAGTTGA 57.126 32.000 2.83 0.00 45.13 3.18
549 559 9.185192 GATTGAACCAAACTTTCATCTAAGTTG 57.815 33.333 2.83 0.00 45.13 3.16
551 561 7.039714 GGGATTGAACCAAACTTTCATCTAAGT 60.040 37.037 0.00 0.00 39.97 2.24
552 562 7.315890 GGGATTGAACCAAACTTTCATCTAAG 58.684 38.462 0.00 0.00 33.03 2.18
553 563 6.210584 GGGGATTGAACCAAACTTTCATCTAA 59.789 38.462 0.00 0.00 33.03 2.10
554 564 5.714806 GGGGATTGAACCAAACTTTCATCTA 59.285 40.000 0.00 0.00 33.03 1.98
555 565 4.528206 GGGGATTGAACCAAACTTTCATCT 59.472 41.667 0.00 0.00 33.03 2.90
556 566 4.283212 TGGGGATTGAACCAAACTTTCATC 59.717 41.667 0.00 0.00 33.03 2.92
557 567 4.040339 GTGGGGATTGAACCAAACTTTCAT 59.960 41.667 0.00 0.00 38.73 2.57
558 568 3.386402 GTGGGGATTGAACCAAACTTTCA 59.614 43.478 0.00 0.00 38.73 2.69
559 569 3.641436 AGTGGGGATTGAACCAAACTTTC 59.359 43.478 0.00 0.00 38.73 2.62
560 570 3.653164 AGTGGGGATTGAACCAAACTTT 58.347 40.909 0.00 0.00 38.73 2.66
561 571 3.328535 AGTGGGGATTGAACCAAACTT 57.671 42.857 0.00 0.00 38.73 2.66
562 572 3.328535 AAGTGGGGATTGAACCAAACT 57.671 42.857 0.00 0.00 38.73 2.66
563 573 5.538849 TTAAAGTGGGGATTGAACCAAAC 57.461 39.130 0.00 0.00 38.73 2.93
564 574 5.425539 TGTTTAAAGTGGGGATTGAACCAAA 59.574 36.000 0.00 0.00 38.73 3.28
565 575 4.962995 TGTTTAAAGTGGGGATTGAACCAA 59.037 37.500 0.00 0.00 38.73 3.67
566 576 4.547671 TGTTTAAAGTGGGGATTGAACCA 58.452 39.130 0.00 0.00 0.00 3.67
567 577 5.538118 CTTGTTTAAAGTGGGGATTGAACC 58.462 41.667 0.00 0.00 0.00 3.62
568 578 4.988540 GCTTGTTTAAAGTGGGGATTGAAC 59.011 41.667 0.00 0.00 0.00 3.18
569 579 4.039852 GGCTTGTTTAAAGTGGGGATTGAA 59.960 41.667 0.00 0.00 0.00 2.69
570 580 3.576550 GGCTTGTTTAAAGTGGGGATTGA 59.423 43.478 0.00 0.00 0.00 2.57
571 581 3.323403 TGGCTTGTTTAAAGTGGGGATTG 59.677 43.478 0.00 0.00 0.00 2.67
572 582 3.323691 GTGGCTTGTTTAAAGTGGGGATT 59.676 43.478 0.00 0.00 0.00 3.01
573 583 2.897326 GTGGCTTGTTTAAAGTGGGGAT 59.103 45.455 0.00 0.00 0.00 3.85
574 584 2.312390 GTGGCTTGTTTAAAGTGGGGA 58.688 47.619 0.00 0.00 0.00 4.81
575 585 2.035632 TGTGGCTTGTTTAAAGTGGGG 58.964 47.619 0.00 0.00 0.00 4.96
576 586 4.306600 GAATGTGGCTTGTTTAAAGTGGG 58.693 43.478 0.00 0.00 0.00 4.61
577 587 3.980775 CGAATGTGGCTTGTTTAAAGTGG 59.019 43.478 0.00 0.00 0.00 4.00
578 588 3.980775 CCGAATGTGGCTTGTTTAAAGTG 59.019 43.478 0.00 0.00 0.00 3.16
579 589 3.634910 ACCGAATGTGGCTTGTTTAAAGT 59.365 39.130 0.00 0.00 0.00 2.66
580 590 4.226761 GACCGAATGTGGCTTGTTTAAAG 58.773 43.478 0.00 0.00 0.00 1.85
581 591 3.004944 GGACCGAATGTGGCTTGTTTAAA 59.995 43.478 0.00 0.00 0.00 1.52
582 592 2.554893 GGACCGAATGTGGCTTGTTTAA 59.445 45.455 0.00 0.00 0.00 1.52
583 593 2.156098 GGACCGAATGTGGCTTGTTTA 58.844 47.619 0.00 0.00 0.00 2.01
584 594 0.958822 GGACCGAATGTGGCTTGTTT 59.041 50.000 0.00 0.00 0.00 2.83
585 595 0.893727 GGGACCGAATGTGGCTTGTT 60.894 55.000 0.00 0.00 0.00 2.83
586 596 1.303317 GGGACCGAATGTGGCTTGT 60.303 57.895 0.00 0.00 0.00 3.16
587 597 2.398554 CGGGACCGAATGTGGCTTG 61.399 63.158 4.40 0.00 42.83 4.01
588 598 1.546589 TACGGGACCGAATGTGGCTT 61.547 55.000 18.80 0.00 42.83 4.35
589 599 1.335132 ATACGGGACCGAATGTGGCT 61.335 55.000 18.80 0.00 42.83 4.75
590 600 0.878961 GATACGGGACCGAATGTGGC 60.879 60.000 18.80 0.00 42.83 5.01
591 601 0.462375 TGATACGGGACCGAATGTGG 59.538 55.000 18.80 0.00 42.83 4.17
592 602 2.526304 ATGATACGGGACCGAATGTG 57.474 50.000 18.80 0.00 42.83 3.21
593 603 4.768448 TGTATATGATACGGGACCGAATGT 59.232 41.667 18.80 6.41 42.83 2.71
594 604 5.319140 TGTATATGATACGGGACCGAATG 57.681 43.478 18.80 0.00 42.83 2.67
595 605 6.540438 AATGTATATGATACGGGACCGAAT 57.460 37.500 18.80 7.80 42.83 3.34
596 606 5.988310 AATGTATATGATACGGGACCGAA 57.012 39.130 18.80 0.32 42.83 4.30
597 607 5.988310 AAATGTATATGATACGGGACCGA 57.012 39.130 18.80 1.45 42.83 4.69
598 608 9.806203 TTTATAAATGTATATGATACGGGACCG 57.194 33.333 9.56 9.56 46.03 4.79
634 644 8.599774 GTCATAAGTTGCAAGTCTAAGAGAATC 58.400 37.037 7.36 0.00 0.00 2.52
635 645 8.317679 AGTCATAAGTTGCAAGTCTAAGAGAAT 58.682 33.333 7.36 0.00 0.00 2.40
636 646 7.671302 AGTCATAAGTTGCAAGTCTAAGAGAA 58.329 34.615 7.36 0.00 0.00 2.87
637 647 7.177568 AGAGTCATAAGTTGCAAGTCTAAGAGA 59.822 37.037 7.36 0.00 0.00 3.10
638 648 7.319646 AGAGTCATAAGTTGCAAGTCTAAGAG 58.680 38.462 7.36 0.00 0.00 2.85
639 649 7.233389 AGAGTCATAAGTTGCAAGTCTAAGA 57.767 36.000 7.36 1.20 0.00 2.10
640 650 7.897575 AAGAGTCATAAGTTGCAAGTCTAAG 57.102 36.000 7.36 0.00 0.00 2.18
641 651 9.944376 AATAAGAGTCATAAGTTGCAAGTCTAA 57.056 29.630 7.36 0.00 0.00 2.10
642 652 9.944376 AAATAAGAGTCATAAGTTGCAAGTCTA 57.056 29.630 7.36 3.24 0.00 2.59
643 653 8.854614 AAATAAGAGTCATAAGTTGCAAGTCT 57.145 30.769 7.36 0.00 0.00 3.24
683 693 9.415008 ACCATACAATGTTGCCAACTTATATAA 57.585 29.630 9.30 0.00 0.00 0.98
684 694 8.988546 ACCATACAATGTTGCCAACTTATATA 57.011 30.769 9.30 0.00 0.00 0.86
685 695 7.896383 ACCATACAATGTTGCCAACTTATAT 57.104 32.000 9.30 2.46 0.00 0.86
686 696 8.809468 TTACCATACAATGTTGCCAACTTATA 57.191 30.769 9.30 0.24 0.00 0.98
687 697 7.710676 TTACCATACAATGTTGCCAACTTAT 57.289 32.000 9.30 0.00 0.00 1.73
688 698 7.526142 TTTACCATACAATGTTGCCAACTTA 57.474 32.000 9.30 0.00 0.00 2.24
689 699 6.412362 TTTACCATACAATGTTGCCAACTT 57.588 33.333 9.30 0.00 0.00 2.66
690 700 6.412362 TTTTACCATACAATGTTGCCAACT 57.588 33.333 9.30 0.00 0.00 3.16
691 701 8.816144 CATATTTTACCATACAATGTTGCCAAC 58.184 33.333 0.00 0.00 0.00 3.77
692 702 7.984050 CCATATTTTACCATACAATGTTGCCAA 59.016 33.333 0.00 0.00 0.00 4.52
693 703 7.343057 TCCATATTTTACCATACAATGTTGCCA 59.657 33.333 0.00 0.00 0.00 4.92
694 704 7.721402 TCCATATTTTACCATACAATGTTGCC 58.279 34.615 0.00 0.00 0.00 4.52
695 705 8.413229 ACTCCATATTTTACCATACAATGTTGC 58.587 33.333 0.00 0.00 0.00 4.17
705 715 8.976353 TGTGCAATTAACTCCATATTTTACCAT 58.024 29.630 0.00 0.00 0.00 3.55
706 716 8.354711 TGTGCAATTAACTCCATATTTTACCA 57.645 30.769 0.00 0.00 0.00 3.25
707 717 8.682710 TCTGTGCAATTAACTCCATATTTTACC 58.317 33.333 0.00 0.00 0.00 2.85
710 720 8.806146 ACTTCTGTGCAATTAACTCCATATTTT 58.194 29.630 0.00 0.00 0.00 1.82
711 721 8.353423 ACTTCTGTGCAATTAACTCCATATTT 57.647 30.769 0.00 0.00 0.00 1.40
712 722 7.944729 ACTTCTGTGCAATTAACTCCATATT 57.055 32.000 0.00 0.00 0.00 1.28
713 723 7.499232 GGTACTTCTGTGCAATTAACTCCATAT 59.501 37.037 0.00 0.00 0.00 1.78
714 724 6.821665 GGTACTTCTGTGCAATTAACTCCATA 59.178 38.462 0.00 0.00 0.00 2.74
715 725 5.648092 GGTACTTCTGTGCAATTAACTCCAT 59.352 40.000 0.00 0.00 0.00 3.41
1015 1035 2.174319 GCGATGGAGGAAACGAGCC 61.174 63.158 0.00 0.00 0.00 4.70
1590 2238 4.218635 CCACTTGAGTAGCTGACTGACTAA 59.781 45.833 0.00 0.00 39.06 2.24
1671 2319 7.744087 AGTAATTACACAAAATCACTGCAGA 57.256 32.000 23.35 0.00 0.00 4.26
1781 2429 0.741927 GCATTCTGCATTGTTGGGGC 60.742 55.000 0.00 0.00 44.26 5.80
1864 2513 7.987458 GTCAGATGGTGGATAGTGAAAGAATTA 59.013 37.037 0.00 0.00 0.00 1.40
1903 2552 2.170607 GTCATAGTTGGCCTCCAGCTTA 59.829 50.000 3.32 0.00 42.30 3.09
2524 3173 7.060748 GCATAACTACTACATACATACACAGCG 59.939 40.741 0.00 0.00 0.00 5.18
3069 3722 3.243873 GGGATCTGCGTGATGAAGTATGA 60.244 47.826 0.00 0.00 35.14 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.