Multiple sequence alignment - TraesCS2A01G122600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G122600 chr2A 100.000 6090 0 0 1 6090 72690495 72696584 0.000000e+00 11247.0
1 TraesCS2A01G122600 chr2A 89.614 337 34 1 3931 4266 72513238 72512902 1.570000e-115 427.0
2 TraesCS2A01G122600 chr2A 82.282 412 68 5 2923 3330 194130008 194129598 9.710000e-93 351.0
3 TraesCS2A01G122600 chr2A 100.000 43 0 0 3 45 72632083 72632041 5.060000e-11 80.5
4 TraesCS2A01G122600 chr2B 94.955 4321 175 19 801 5105 110852008 110856301 0.000000e+00 6732.0
5 TraesCS2A01G122600 chr2B 87.917 480 50 4 3935 4412 110796183 110795710 5.330000e-155 558.0
6 TraesCS2A01G122600 chr2B 85.045 448 59 5 4409 4852 110778590 110778147 3.350000e-122 449.0
7 TraesCS2A01G122600 chr2B 87.778 360 27 8 5741 6090 111034561 111034913 7.350000e-109 405.0
8 TraesCS2A01G122600 chr2B 82.324 413 68 5 2923 3331 236527267 236526856 2.700000e-93 353.0
9 TraesCS2A01G122600 chr2B 94.660 206 7 2 46 248 249331643 249331847 3.540000e-82 316.0
10 TraesCS2A01G122600 chr2B 85.887 248 27 8 496 739 161202383 161202140 2.180000e-64 257.0
11 TraesCS2A01G122600 chr2B 85.600 250 30 5 495 739 672527240 672526992 2.180000e-64 257.0
12 TraesCS2A01G122600 chr2B 87.204 211 22 4 129 335 564851732 564851523 1.020000e-57 235.0
13 TraesCS2A01G122600 chr2B 82.278 237 33 8 500 733 733070493 733070723 4.820000e-46 196.0
14 TraesCS2A01G122600 chr2B 83.333 216 29 7 125 335 473581144 473580931 6.230000e-45 193.0
15 TraesCS2A01G122600 chr2B 91.852 135 10 1 4978 5111 110859348 110859482 2.900000e-43 187.0
16 TraesCS2A01G122600 chr2D 95.554 2294 91 6 2812 5105 73324012 73321730 0.000000e+00 3661.0
17 TraesCS2A01G122600 chr2D 96.920 1786 55 0 987 2772 73325893 73324108 0.000000e+00 2994.0
18 TraesCS2A01G122600 chr2D 89.934 457 45 1 3920 4375 73207287 73206831 6.800000e-164 588.0
19 TraesCS2A01G122600 chr2D 91.864 295 14 6 5801 6090 73317927 73317638 2.640000e-108 403.0
20 TraesCS2A01G122600 chr2D 92.045 264 16 5 736 995 73326336 73326074 3.470000e-97 366.0
21 TraesCS2A01G122600 chr2D 82.082 413 67 6 2923 3330 179692148 179691738 4.520000e-91 346.0
22 TraesCS2A01G122600 chr2D 84.615 260 26 9 129 375 361738382 361738640 4.710000e-61 246.0
23 TraesCS2A01G122600 chr2D 86.124 209 25 4 130 335 165011542 165011749 7.940000e-54 222.0
24 TraesCS2A01G122600 chr2D 87.640 178 21 1 129 305 641946173 641946350 8.000000e-49 206.0
25 TraesCS2A01G122600 chr2D 94.393 107 6 0 130 236 645768833 645768727 1.360000e-36 165.0
26 TraesCS2A01G122600 chr2D 96.429 84 2 1 415 498 73326415 73326333 2.960000e-28 137.0
27 TraesCS2A01G122600 chr2D 97.403 77 2 0 5733 5809 73321721 73321645 1.380000e-26 132.0
28 TraesCS2A01G122600 chr2D 97.826 46 1 0 1 46 26453569 26453614 5.060000e-11 80.5
29 TraesCS2A01G122600 chr5A 95.130 616 24 4 5107 5721 468360541 468359931 0.000000e+00 966.0
30 TraesCS2A01G122600 chr5A 83.401 247 34 4 496 739 698610194 698610436 7.940000e-54 222.0
31 TraesCS2A01G122600 chr1A 91.360 625 43 10 5103 5721 539730564 539731183 0.000000e+00 845.0
32 TraesCS2A01G122600 chr1A 89.855 621 52 10 5106 5721 555966923 555966309 0.000000e+00 787.0
33 TraesCS2A01G122600 chr1A 86.058 624 69 15 5107 5720 6317016 6316401 0.000000e+00 654.0
34 TraesCS2A01G122600 chr1A 85.020 247 28 3 498 737 14469930 14470174 6.100000e-60 243.0
35 TraesCS2A01G122600 chr1A 76.204 353 70 12 2212 2557 256825011 256825356 2.260000e-39 174.0
36 TraesCS2A01G122600 chr1A 79.518 83 12 3 5785 5866 569465476 569465554 3.000000e-03 54.7
37 TraesCS2A01G122600 chr7A 90.338 621 49 10 5107 5721 644727844 644728459 0.000000e+00 804.0
38 TraesCS2A01G122600 chr7A 89.490 628 53 12 5101 5721 690431347 690430726 0.000000e+00 782.0
39 TraesCS2A01G122600 chr7A 86.922 627 65 13 5104 5721 736672267 736672885 0.000000e+00 688.0
40 TraesCS2A01G122600 chr7A 88.194 432 48 3 2918 3347 484595329 484595759 4.210000e-141 512.0
41 TraesCS2A01G122600 chr7A 78.146 755 144 13 2019 2767 484594444 484595183 1.550000e-125 460.0
42 TraesCS2A01G122600 chr7A 97.778 45 1 0 1 45 6781007 6780963 1.820000e-10 78.7
43 TraesCS2A01G122600 chr7A 97.778 45 1 0 1 45 6786465 6786509 1.820000e-10 78.7
44 TraesCS2A01G122600 chr6A 88.907 622 54 13 5107 5721 121739215 121739828 0.000000e+00 752.0
45 TraesCS2A01G122600 chr6A 86.364 616 67 14 5111 5721 46559870 46560473 0.000000e+00 656.0
46 TraesCS2A01G122600 chr6A 83.333 120 19 1 5768 5886 491921737 491921856 6.450000e-20 110.0
47 TraesCS2A01G122600 chr6A 81.538 130 17 6 5780 5907 570916075 570916199 3.880000e-17 100.0
48 TraesCS2A01G122600 chr6A 100.000 46 0 0 1 46 60036978 60037023 1.090000e-12 86.1
49 TraesCS2A01G122600 chr6A 97.826 46 1 0 1 46 60031374 60031329 5.060000e-11 80.5
50 TraesCS2A01G122600 chr6A 85.455 55 6 2 323 376 270742818 270742765 8.530000e-04 56.5
51 TraesCS2A01G122600 chr3A 87.680 625 62 12 5106 5721 738917278 738916660 0.000000e+00 713.0
52 TraesCS2A01G122600 chr5D 86.124 627 64 18 5105 5721 243809285 243809898 0.000000e+00 654.0
53 TraesCS2A01G122600 chr5D 82.917 240 32 9 486 724 299936480 299936249 2.220000e-49 207.0
54 TraesCS2A01G122600 chr7B 80.153 917 143 34 2918 3816 451353793 451354688 0.000000e+00 649.0
55 TraesCS2A01G122600 chr7B 76.943 759 153 15 2019 2771 451352907 451353649 4.390000e-111 412.0
56 TraesCS2A01G122600 chr7B 86.905 84 10 1 292 375 115810528 115810446 6.500000e-15 93.5
57 TraesCS2A01G122600 chr7B 97.436 39 1 0 375 413 677423190 677423228 3.940000e-07 67.6
58 TraesCS2A01G122600 chr4D 85.805 627 66 19 5105 5721 22992300 22992913 1.430000e-180 643.0
59 TraesCS2A01G122600 chr4D 86.722 241 28 4 498 737 3608552 3608315 1.300000e-66 265.0
60 TraesCS2A01G122600 chr4D 90.845 142 11 2 129 270 10376168 10376307 8.060000e-44 189.0
61 TraesCS2A01G122600 chr7D 85.805 627 61 21 5106 5721 88142426 88141817 1.850000e-179 640.0
62 TraesCS2A01G122600 chr7D 87.991 433 47 5 2918 3347 434148230 434148660 1.960000e-139 507.0
63 TraesCS2A01G122600 chr7D 78.026 760 143 16 2019 2771 434147341 434148083 2.000000e-124 457.0
64 TraesCS2A01G122600 chr7D 88.725 204 20 3 131 332 180731769 180731971 4.710000e-61 246.0
65 TraesCS2A01G122600 chr7D 87.923 207 21 4 129 332 180729365 180729570 2.190000e-59 241.0
66 TraesCS2A01G122600 chr7D 87.923 207 21 4 129 332 180734293 180734498 2.190000e-59 241.0
67 TraesCS2A01G122600 chr7D 97.778 45 1 0 1 45 204007788 204007832 1.820000e-10 78.7
68 TraesCS2A01G122600 chr7D 90.566 53 5 0 323 375 446869931 446869879 3.050000e-08 71.3
69 TraesCS2A01G122600 chr3D 85.531 622 66 19 5105 5716 93034828 93035435 4.010000e-176 628.0
70 TraesCS2A01G122600 chr4B 84.863 621 77 15 5107 5721 51840416 51839807 1.450000e-170 610.0
71 TraesCS2A01G122600 chr4B 80.790 557 88 16 5173 5721 448813327 448812782 9.440000e-113 418.0
72 TraesCS2A01G122600 chr4B 83.333 90 13 2 294 381 37538706 37538795 1.410000e-11 82.4
73 TraesCS2A01G122600 chr4B 97.436 39 1 0 374 412 553345109 553345071 3.940000e-07 67.6
74 TraesCS2A01G122600 chr6B 83.680 625 75 22 5105 5716 50343511 50342901 1.150000e-156 564.0
75 TraesCS2A01G122600 chr6B 85.657 251 28 4 495 739 98990600 98990848 2.180000e-64 257.0
76 TraesCS2A01G122600 chr6B 83.333 90 13 2 294 381 129766022 129765933 1.410000e-11 82.4
77 TraesCS2A01G122600 chr6B 83.333 90 13 2 294 381 129766457 129766368 1.410000e-11 82.4
78 TraesCS2A01G122600 chr6B 97.436 39 1 0 374 412 403396525 403396487 3.940000e-07 67.6
79 TraesCS2A01G122600 chr6B 93.182 44 3 0 375 418 92696073 92696116 1.420000e-06 65.8
80 TraesCS2A01G122600 chr1D 80.952 420 71 9 2918 3331 99830554 99830138 2.120000e-84 324.0
81 TraesCS2A01G122600 chr1D 76.204 353 70 12 2212 2557 202567529 202567874 2.260000e-39 174.0
82 TraesCS2A01G122600 chr1D 86.765 68 8 1 308 374 402699110 402699043 2.350000e-09 75.0
83 TraesCS2A01G122600 chr6D 85.507 276 32 4 5448 5721 58248387 58248656 1.290000e-71 281.0
84 TraesCS2A01G122600 chr6D 90.710 183 12 4 5106 5288 58247995 58248172 7.890000e-59 239.0
85 TraesCS2A01G122600 chr6D 83.333 240 34 4 498 737 428400394 428400161 3.700000e-52 217.0
86 TraesCS2A01G122600 chr6D 96.875 32 0 1 349 379 22832606 22832637 1.100000e-02 52.8
87 TraesCS2A01G122600 chr4A 89.100 211 19 3 129 335 637217173 637217383 6.060000e-65 259.0
88 TraesCS2A01G122600 chr4A 87.654 81 10 0 294 374 512416761 512416681 1.810000e-15 95.3
89 TraesCS2A01G122600 chr4A 83.333 90 13 2 294 381 600964055 600963966 1.410000e-11 82.4
90 TraesCS2A01G122600 chr4A 83.333 90 13 2 294 381 641290428 641290517 1.410000e-11 82.4
91 TraesCS2A01G122600 chr4A 83.333 90 13 2 294 381 679093855 679093766 1.410000e-11 82.4
92 TraesCS2A01G122600 chr4A 97.436 39 1 0 375 413 135617419 135617457 3.940000e-07 67.6
93 TraesCS2A01G122600 chr3B 85.259 251 28 6 129 375 254017411 254017656 3.640000e-62 250.0
94 TraesCS2A01G122600 chr3B 89.873 79 7 1 296 374 670116697 670116774 3.880000e-17 100.0
95 TraesCS2A01G122600 chr3B 87.692 65 8 0 5781 5845 45047581 45047517 6.550000e-10 76.8
96 TraesCS2A01G122600 chr1B 83.962 212 27 6 170 375 686746508 686746718 4.820000e-46 196.0
97 TraesCS2A01G122600 chr1B 76.068 351 74 9 2212 2557 296499976 296500321 2.260000e-39 174.0
98 TraesCS2A01G122600 chr1B 95.349 43 2 0 375 417 397661830 397661872 1.100000e-07 69.4
99 TraesCS2A01G122600 chr1B 97.436 39 1 0 375 413 144876153 144876191 3.940000e-07 67.6
100 TraesCS2A01G122600 chr1B 93.333 45 3 0 374 418 537462861 537462905 3.940000e-07 67.6
101 TraesCS2A01G122600 chr5B 88.750 80 9 0 296 375 456328739 456328660 1.400000e-16 99.0
102 TraesCS2A01G122600 chr5B 95.122 41 2 0 375 415 669499416 669499376 1.420000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G122600 chr2A 72690495 72696584 6089 False 11247.000000 11247 100.000000 1 6090 1 chr2A.!!$F1 6089
1 TraesCS2A01G122600 chr2B 110852008 110859482 7474 False 3459.500000 6732 93.403500 801 5111 2 chr2B.!!$F4 4310
2 TraesCS2A01G122600 chr2D 73317638 73326415 8777 True 1282.166667 3661 95.035833 415 6090 6 chr2D.!!$R4 5675
3 TraesCS2A01G122600 chr5A 468359931 468360541 610 True 966.000000 966 95.130000 5107 5721 1 chr5A.!!$R1 614
4 TraesCS2A01G122600 chr1A 539730564 539731183 619 False 845.000000 845 91.360000 5103 5721 1 chr1A.!!$F3 618
5 TraesCS2A01G122600 chr1A 555966309 555966923 614 True 787.000000 787 89.855000 5106 5721 1 chr1A.!!$R2 615
6 TraesCS2A01G122600 chr1A 6316401 6317016 615 True 654.000000 654 86.058000 5107 5720 1 chr1A.!!$R1 613
7 TraesCS2A01G122600 chr7A 644727844 644728459 615 False 804.000000 804 90.338000 5107 5721 1 chr7A.!!$F2 614
8 TraesCS2A01G122600 chr7A 690430726 690431347 621 True 782.000000 782 89.490000 5101 5721 1 chr7A.!!$R2 620
9 TraesCS2A01G122600 chr7A 736672267 736672885 618 False 688.000000 688 86.922000 5104 5721 1 chr7A.!!$F3 617
10 TraesCS2A01G122600 chr7A 484594444 484595759 1315 False 486.000000 512 83.170000 2019 3347 2 chr7A.!!$F4 1328
11 TraesCS2A01G122600 chr6A 121739215 121739828 613 False 752.000000 752 88.907000 5107 5721 1 chr6A.!!$F3 614
12 TraesCS2A01G122600 chr6A 46559870 46560473 603 False 656.000000 656 86.364000 5111 5721 1 chr6A.!!$F1 610
13 TraesCS2A01G122600 chr3A 738916660 738917278 618 True 713.000000 713 87.680000 5106 5721 1 chr3A.!!$R1 615
14 TraesCS2A01G122600 chr5D 243809285 243809898 613 False 654.000000 654 86.124000 5105 5721 1 chr5D.!!$F1 616
15 TraesCS2A01G122600 chr7B 451352907 451354688 1781 False 530.500000 649 78.548000 2019 3816 2 chr7B.!!$F2 1797
16 TraesCS2A01G122600 chr4D 22992300 22992913 613 False 643.000000 643 85.805000 5105 5721 1 chr4D.!!$F2 616
17 TraesCS2A01G122600 chr7D 88141817 88142426 609 True 640.000000 640 85.805000 5106 5721 1 chr7D.!!$R1 615
18 TraesCS2A01G122600 chr7D 434147341 434148660 1319 False 482.000000 507 83.008500 2019 3347 2 chr7D.!!$F3 1328
19 TraesCS2A01G122600 chr7D 180729365 180734498 5133 False 242.666667 246 88.190333 129 332 3 chr7D.!!$F2 203
20 TraesCS2A01G122600 chr3D 93034828 93035435 607 False 628.000000 628 85.531000 5105 5716 1 chr3D.!!$F1 611
21 TraesCS2A01G122600 chr4B 51839807 51840416 609 True 610.000000 610 84.863000 5107 5721 1 chr4B.!!$R1 614
22 TraesCS2A01G122600 chr4B 448812782 448813327 545 True 418.000000 418 80.790000 5173 5721 1 chr4B.!!$R2 548
23 TraesCS2A01G122600 chr6B 50342901 50343511 610 True 564.000000 564 83.680000 5105 5716 1 chr6B.!!$R1 611
24 TraesCS2A01G122600 chr6D 58247995 58248656 661 False 260.000000 281 88.108500 5106 5721 2 chr6D.!!$F2 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.040157 CGACGGGTCGTACAAAGACA 60.040 55.000 12.77 0.0 46.99 3.41 F
59 60 0.101399 CACTCCGAGATGGACGAAGG 59.899 60.000 1.33 0.0 43.74 3.46 F
874 897 0.108585 TCCTTCACCACACAAGCTCC 59.891 55.000 0.00 0.0 0.00 4.70 F
1059 1271 1.004560 CATGGACGAGCACACAGGT 60.005 57.895 0.00 0.0 0.00 4.00 F
2803 4190 0.107848 GCCGGAACTTTGCCTAGCTA 60.108 55.000 5.05 0.0 0.00 3.32 F
4216 5612 0.326264 AGGTCAAGTGGTCAGGCATC 59.674 55.000 0.00 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1073 1285 1.688772 CATGGCTGGGATCCTTCAAG 58.311 55.000 12.58 5.87 0.00 3.02 R
1243 1458 2.028190 CTGAGATACCGCCCGCTG 59.972 66.667 0.00 0.00 0.00 5.18 R
2216 3534 0.965866 TCGGCAGTGGAGACGAAGAT 60.966 55.000 0.00 0.00 31.79 2.40 R
2898 4294 1.064946 GATCAGCTGGTCCTCGTCG 59.935 63.158 16.62 0.00 0.00 5.12 R
4292 5688 0.561680 ATCGGGACCCTAGCTAGGTT 59.438 55.000 33.00 23.58 42.03 3.50 R
5938 15050 1.067516 ACATTGCAGTTGGACTTGCAC 59.932 47.619 0.00 0.00 34.01 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.716988 CGACGGGTCGTACAAAGAC 58.283 57.895 12.77 0.00 46.99 3.01
22 23 0.040157 CGACGGGTCGTACAAAGACA 60.040 55.000 12.77 0.00 46.99 3.41
23 24 1.694639 GACGGGTCGTACAAAGACAG 58.305 55.000 0.00 0.00 41.37 3.51
24 25 0.316204 ACGGGTCGTACAAAGACAGG 59.684 55.000 0.00 0.00 38.73 4.00
25 26 0.389426 CGGGTCGTACAAAGACAGGG 60.389 60.000 0.00 0.00 40.20 4.45
26 27 0.683412 GGGTCGTACAAAGACAGGGT 59.317 55.000 0.00 0.00 40.20 4.34
27 28 1.071228 GGGTCGTACAAAGACAGGGTT 59.929 52.381 0.00 0.00 40.20 4.11
28 29 2.486013 GGGTCGTACAAAGACAGGGTTT 60.486 50.000 0.00 0.00 40.20 3.27
29 30 2.546789 GGTCGTACAAAGACAGGGTTTG 59.453 50.000 0.00 0.00 40.20 2.93
31 32 3.624410 GTCGTACAAAGACAGGGTTTGTT 59.376 43.478 6.53 0.00 43.97 2.83
32 33 4.095334 GTCGTACAAAGACAGGGTTTGTTT 59.905 41.667 6.53 0.00 43.97 2.83
33 34 4.333372 TCGTACAAAGACAGGGTTTGTTTC 59.667 41.667 6.53 1.51 43.97 2.78
34 35 4.095185 CGTACAAAGACAGGGTTTGTTTCA 59.905 41.667 6.53 0.00 43.97 2.69
35 36 4.718940 ACAAAGACAGGGTTTGTTTCAG 57.281 40.909 0.00 0.00 43.97 3.02
36 37 4.340617 ACAAAGACAGGGTTTGTTTCAGA 58.659 39.130 0.00 0.00 43.97 3.27
37 38 4.157840 ACAAAGACAGGGTTTGTTTCAGAC 59.842 41.667 0.00 0.00 43.97 3.51
38 39 3.933861 AGACAGGGTTTGTTTCAGACT 57.066 42.857 0.00 0.00 41.05 3.24
39 40 4.236527 AGACAGGGTTTGTTTCAGACTT 57.763 40.909 0.00 0.00 41.05 3.01
40 41 4.200092 AGACAGGGTTTGTTTCAGACTTC 58.800 43.478 0.00 0.00 41.05 3.01
41 42 3.945285 GACAGGGTTTGTTTCAGACTTCA 59.055 43.478 0.00 0.00 41.05 3.02
42 43 3.694566 ACAGGGTTTGTTTCAGACTTCAC 59.305 43.478 0.00 0.00 36.31 3.18
43 44 3.947834 CAGGGTTTGTTTCAGACTTCACT 59.052 43.478 0.00 0.00 0.00 3.41
44 45 4.035675 CAGGGTTTGTTTCAGACTTCACTC 59.964 45.833 0.00 0.00 0.00 3.51
45 46 3.315470 GGGTTTGTTTCAGACTTCACTCC 59.685 47.826 0.00 0.00 0.00 3.85
46 47 3.002348 GGTTTGTTTCAGACTTCACTCCG 59.998 47.826 0.00 0.00 0.00 4.63
47 48 3.812156 TTGTTTCAGACTTCACTCCGA 57.188 42.857 0.00 0.00 0.00 4.55
48 49 3.371102 TGTTTCAGACTTCACTCCGAG 57.629 47.619 0.00 0.00 0.00 4.63
49 50 2.956333 TGTTTCAGACTTCACTCCGAGA 59.044 45.455 1.33 0.00 0.00 4.04
50 51 3.574396 TGTTTCAGACTTCACTCCGAGAT 59.426 43.478 1.33 0.00 0.00 2.75
51 52 3.857549 TTCAGACTTCACTCCGAGATG 57.142 47.619 1.33 0.00 0.00 2.90
52 53 2.095461 TCAGACTTCACTCCGAGATGG 58.905 52.381 1.33 0.00 40.09 3.51
54 55 2.096248 AGACTTCACTCCGAGATGGAC 58.904 52.381 1.33 0.00 43.74 4.02
55 56 0.811915 ACTTCACTCCGAGATGGACG 59.188 55.000 1.33 0.00 43.74 4.79
56 57 1.095600 CTTCACTCCGAGATGGACGA 58.904 55.000 1.33 0.00 43.74 4.20
57 58 1.472878 CTTCACTCCGAGATGGACGAA 59.527 52.381 1.33 0.00 43.74 3.85
58 59 1.095600 TCACTCCGAGATGGACGAAG 58.904 55.000 1.33 0.00 43.74 3.79
59 60 0.101399 CACTCCGAGATGGACGAAGG 59.899 60.000 1.33 0.00 43.74 3.46
60 61 1.038130 ACTCCGAGATGGACGAAGGG 61.038 60.000 1.33 0.00 43.74 3.95
61 62 1.000019 TCCGAGATGGACGAAGGGT 60.000 57.895 0.00 0.00 43.74 4.34
62 63 1.141881 CCGAGATGGACGAAGGGTG 59.858 63.158 0.00 0.00 42.00 4.61
63 64 1.141881 CGAGATGGACGAAGGGTGG 59.858 63.158 0.00 0.00 0.00 4.61
64 65 1.522569 GAGATGGACGAAGGGTGGG 59.477 63.158 0.00 0.00 0.00 4.61
65 66 1.972660 GAGATGGACGAAGGGTGGGG 61.973 65.000 0.00 0.00 0.00 4.96
66 67 3.699134 GATGGACGAAGGGTGGGGC 62.699 68.421 0.00 0.00 0.00 5.80
68 69 3.961414 GGACGAAGGGTGGGGCAA 61.961 66.667 0.00 0.00 0.00 4.52
69 70 2.359975 GACGAAGGGTGGGGCAAG 60.360 66.667 0.00 0.00 0.00 4.01
70 71 2.852075 ACGAAGGGTGGGGCAAGA 60.852 61.111 0.00 0.00 0.00 3.02
71 72 2.198304 GACGAAGGGTGGGGCAAGAT 62.198 60.000 0.00 0.00 0.00 2.40
72 73 1.750399 CGAAGGGTGGGGCAAGATG 60.750 63.158 0.00 0.00 0.00 2.90
73 74 1.384191 GAAGGGTGGGGCAAGATGT 59.616 57.895 0.00 0.00 0.00 3.06
74 75 0.967380 GAAGGGTGGGGCAAGATGTG 60.967 60.000 0.00 0.00 0.00 3.21
75 76 2.362889 GGGTGGGGCAAGATGTGG 60.363 66.667 0.00 0.00 0.00 4.17
76 77 2.440599 GGTGGGGCAAGATGTGGT 59.559 61.111 0.00 0.00 0.00 4.16
77 78 1.678970 GGTGGGGCAAGATGTGGTC 60.679 63.158 0.00 0.00 0.00 4.02
78 79 2.040544 GTGGGGCAAGATGTGGTCG 61.041 63.158 0.00 0.00 0.00 4.79
79 80 3.134127 GGGGCAAGATGTGGTCGC 61.134 66.667 0.00 0.00 0.00 5.19
80 81 2.045926 GGGCAAGATGTGGTCGCT 60.046 61.111 0.00 0.00 0.00 4.93
81 82 1.675641 GGGCAAGATGTGGTCGCTT 60.676 57.895 0.00 0.00 0.00 4.68
82 83 1.503542 GGCAAGATGTGGTCGCTTG 59.496 57.895 0.00 0.00 41.36 4.01
83 84 1.503542 GCAAGATGTGGTCGCTTGG 59.496 57.895 0.00 0.00 39.42 3.61
84 85 1.503542 CAAGATGTGGTCGCTTGGC 59.496 57.895 0.00 0.00 36.31 4.52
85 86 1.073025 AAGATGTGGTCGCTTGGCA 59.927 52.632 0.00 0.00 0.00 4.92
86 87 0.957395 AAGATGTGGTCGCTTGGCAG 60.957 55.000 0.00 0.00 0.00 4.85
87 88 2.360350 ATGTGGTCGCTTGGCAGG 60.360 61.111 0.00 0.00 0.00 4.85
88 89 2.803155 GATGTGGTCGCTTGGCAGGA 62.803 60.000 0.00 0.00 0.00 3.86
89 90 2.281484 GTGGTCGCTTGGCAGGAA 60.281 61.111 0.00 0.00 0.00 3.36
90 91 1.896660 GTGGTCGCTTGGCAGGAAA 60.897 57.895 0.00 0.00 0.00 3.13
91 92 1.152860 TGGTCGCTTGGCAGGAAAA 60.153 52.632 0.00 0.00 0.00 2.29
92 93 0.539438 TGGTCGCTTGGCAGGAAAAT 60.539 50.000 0.00 0.00 0.00 1.82
93 94 0.109132 GGTCGCTTGGCAGGAAAATG 60.109 55.000 0.00 0.00 0.00 2.32
94 95 0.881118 GTCGCTTGGCAGGAAAATGA 59.119 50.000 0.00 0.00 0.00 2.57
95 96 1.269448 GTCGCTTGGCAGGAAAATGAA 59.731 47.619 0.00 0.00 0.00 2.57
96 97 1.269448 TCGCTTGGCAGGAAAATGAAC 59.731 47.619 0.00 0.00 0.00 3.18
97 98 1.000385 CGCTTGGCAGGAAAATGAACA 60.000 47.619 0.00 0.00 0.00 3.18
98 99 2.407090 GCTTGGCAGGAAAATGAACAC 58.593 47.619 0.00 0.00 0.00 3.32
99 100 2.224018 GCTTGGCAGGAAAATGAACACA 60.224 45.455 0.00 0.00 0.00 3.72
100 101 3.555586 GCTTGGCAGGAAAATGAACACAT 60.556 43.478 0.00 0.00 0.00 3.21
101 102 4.634199 CTTGGCAGGAAAATGAACACATT 58.366 39.130 0.00 0.00 36.02 2.71
102 103 5.782047 CTTGGCAGGAAAATGAACACATTA 58.218 37.500 0.00 0.00 34.38 1.90
103 104 5.389859 TGGCAGGAAAATGAACACATTAG 57.610 39.130 0.00 0.00 34.38 1.73
104 105 4.220382 TGGCAGGAAAATGAACACATTAGG 59.780 41.667 0.00 0.00 34.38 2.69
105 106 4.462483 GGCAGGAAAATGAACACATTAGGA 59.538 41.667 0.00 0.00 34.38 2.94
106 107 5.393461 GGCAGGAAAATGAACACATTAGGAG 60.393 44.000 0.00 0.00 34.38 3.69
107 108 5.183904 GCAGGAAAATGAACACATTAGGAGT 59.816 40.000 0.00 0.00 34.38 3.85
108 109 6.374333 GCAGGAAAATGAACACATTAGGAGTA 59.626 38.462 0.00 0.00 34.38 2.59
109 110 7.067494 GCAGGAAAATGAACACATTAGGAGTAT 59.933 37.037 0.00 0.00 34.38 2.12
110 111 9.613428 CAGGAAAATGAACACATTAGGAGTATA 57.387 33.333 0.00 0.00 34.38 1.47
111 112 9.838339 AGGAAAATGAACACATTAGGAGTATAG 57.162 33.333 0.00 0.00 34.38 1.31
112 113 9.832445 GGAAAATGAACACATTAGGAGTATAGA 57.168 33.333 0.00 0.00 34.38 1.98
118 119 9.653287 TGAACACATTAGGAGTATAGACAAAAG 57.347 33.333 0.00 0.00 0.00 2.27
119 120 9.871238 GAACACATTAGGAGTATAGACAAAAGA 57.129 33.333 0.00 0.00 0.00 2.52
153 154 9.355916 GGCATTAGGAAAGTTAGGATTTAGAAT 57.644 33.333 0.00 0.00 0.00 2.40
228 229 4.214758 GCCCGTTTGTAACATGTCTAGTTT 59.785 41.667 0.00 0.00 0.00 2.66
236 237 9.959749 TTTGTAACATGTCTAGTTTGGAAATTC 57.040 29.630 0.00 0.00 0.00 2.17
294 296 1.874129 ACCAACACGGGGAGATATGA 58.126 50.000 0.00 0.00 40.22 2.15
306 308 4.104086 GGGAGATATGATGGTGGGATGTA 58.896 47.826 0.00 0.00 0.00 2.29
316 318 3.605634 TGGTGGGATGTAAGACGAAATG 58.394 45.455 0.00 0.00 0.00 2.32
324 342 4.718858 TGTAAGACGAAATGAACCAACG 57.281 40.909 0.00 0.00 0.00 4.10
339 357 3.212685 ACCAACGAAAATAAACCGTGGA 58.787 40.909 0.00 0.00 36.58 4.02
340 358 3.822167 ACCAACGAAAATAAACCGTGGAT 59.178 39.130 0.00 0.00 36.58 3.41
341 359 5.002516 ACCAACGAAAATAAACCGTGGATA 58.997 37.500 0.00 0.00 36.58 2.59
342 360 5.106594 ACCAACGAAAATAAACCGTGGATAC 60.107 40.000 0.00 0.00 36.58 2.24
343 361 5.122711 CCAACGAAAATAAACCGTGGATACT 59.877 40.000 0.00 0.00 36.58 2.12
344 362 6.313411 CCAACGAAAATAAACCGTGGATACTA 59.687 38.462 0.00 0.00 36.58 1.82
346 364 8.392612 CAACGAAAATAAACCGTGGATACTATT 58.607 33.333 0.00 0.00 36.58 1.73
347 365 8.134905 ACGAAAATAAACCGTGGATACTATTC 57.865 34.615 0.00 0.00 35.02 1.75
349 367 8.770828 CGAAAATAAACCGTGGATACTATTCAT 58.229 33.333 0.00 0.00 37.61 2.57
355 373 5.601662 ACCGTGGATACTATTCATCAACTG 58.398 41.667 0.00 0.00 37.61 3.16
356 374 4.449068 CCGTGGATACTATTCATCAACTGC 59.551 45.833 0.00 0.00 37.61 4.40
357 375 5.292765 CGTGGATACTATTCATCAACTGCT 58.707 41.667 0.00 0.00 37.61 4.24
358 376 5.403766 CGTGGATACTATTCATCAACTGCTC 59.596 44.000 0.00 0.00 37.61 4.26
379 397 5.623551 TCCATTAGGAGTAGAGATGGGAT 57.376 43.478 0.00 0.00 39.61 3.85
380 398 5.982391 TCCATTAGGAGTAGAGATGGGATT 58.018 41.667 0.00 0.00 39.61 3.01
381 399 5.782331 TCCATTAGGAGTAGAGATGGGATTG 59.218 44.000 0.00 0.00 39.61 2.67
382 400 5.486526 CATTAGGAGTAGAGATGGGATTGC 58.513 45.833 0.00 0.00 0.00 3.56
383 401 3.342926 AGGAGTAGAGATGGGATTGCT 57.657 47.619 0.00 0.00 0.00 3.91
384 402 4.477536 AGGAGTAGAGATGGGATTGCTA 57.522 45.455 0.00 0.00 0.00 3.49
386 404 4.837860 AGGAGTAGAGATGGGATTGCTAAG 59.162 45.833 0.00 0.00 0.00 2.18
387 405 4.835615 GGAGTAGAGATGGGATTGCTAAGA 59.164 45.833 0.00 0.00 0.00 2.10
389 407 6.665680 GGAGTAGAGATGGGATTGCTAAGATA 59.334 42.308 0.00 0.00 0.00 1.98
390 408 7.147915 GGAGTAGAGATGGGATTGCTAAGATAG 60.148 44.444 0.00 0.00 0.00 2.08
391 409 7.474445 AGTAGAGATGGGATTGCTAAGATAGA 58.526 38.462 0.00 0.00 0.00 1.98
392 410 7.952930 AGTAGAGATGGGATTGCTAAGATAGAA 59.047 37.037 0.00 0.00 0.00 2.10
393 411 7.003402 AGAGATGGGATTGCTAAGATAGAAC 57.997 40.000 0.00 0.00 0.00 3.01
394 412 6.013812 AGAGATGGGATTGCTAAGATAGAACC 60.014 42.308 0.00 0.00 0.00 3.62
395 413 5.608437 AGATGGGATTGCTAAGATAGAACCA 59.392 40.000 0.00 0.00 0.00 3.67
396 414 5.912149 TGGGATTGCTAAGATAGAACCAT 57.088 39.130 0.00 0.00 0.00 3.55
397 415 6.266131 TGGGATTGCTAAGATAGAACCATT 57.734 37.500 0.00 0.00 0.00 3.16
398 416 6.064060 TGGGATTGCTAAGATAGAACCATTG 58.936 40.000 0.00 0.00 0.00 2.82
399 417 6.064717 GGGATTGCTAAGATAGAACCATTGT 58.935 40.000 0.00 0.00 0.00 2.71
400 418 7.147391 TGGGATTGCTAAGATAGAACCATTGTA 60.147 37.037 0.00 0.00 0.00 2.41
401 419 7.173390 GGGATTGCTAAGATAGAACCATTGTAC 59.827 40.741 0.00 0.00 0.00 2.90
402 420 7.715249 GGATTGCTAAGATAGAACCATTGTACA 59.285 37.037 0.00 0.00 0.00 2.90
403 421 9.277783 GATTGCTAAGATAGAACCATTGTACAT 57.722 33.333 0.00 0.00 0.00 2.29
404 422 8.437360 TTGCTAAGATAGAACCATTGTACATG 57.563 34.615 0.00 0.00 0.00 3.21
405 423 6.483307 TGCTAAGATAGAACCATTGTACATGC 59.517 38.462 0.00 0.00 0.00 4.06
406 424 6.073003 GCTAAGATAGAACCATTGTACATGCC 60.073 42.308 0.00 0.00 0.00 4.40
407 425 4.718961 AGATAGAACCATTGTACATGCCC 58.281 43.478 0.00 0.00 0.00 5.36
408 426 4.413520 AGATAGAACCATTGTACATGCCCT 59.586 41.667 0.00 0.00 0.00 5.19
409 427 3.456380 AGAACCATTGTACATGCCCTT 57.544 42.857 0.00 0.00 0.00 3.95
410 428 4.584638 AGAACCATTGTACATGCCCTTA 57.415 40.909 0.00 0.00 0.00 2.69
411 429 4.526970 AGAACCATTGTACATGCCCTTAG 58.473 43.478 0.00 0.00 0.00 2.18
412 430 4.227300 AGAACCATTGTACATGCCCTTAGA 59.773 41.667 0.00 0.00 0.00 2.10
413 431 4.584638 ACCATTGTACATGCCCTTAGAA 57.415 40.909 0.00 0.00 0.00 2.10
414 432 4.526970 ACCATTGTACATGCCCTTAGAAG 58.473 43.478 0.00 0.00 0.00 2.85
415 433 4.227300 ACCATTGTACATGCCCTTAGAAGA 59.773 41.667 0.00 0.00 0.00 2.87
416 434 4.818546 CCATTGTACATGCCCTTAGAAGAG 59.181 45.833 0.00 0.00 0.00 2.85
417 435 4.487714 TTGTACATGCCCTTAGAAGAGG 57.512 45.455 0.00 0.00 36.52 3.69
418 436 3.450904 TGTACATGCCCTTAGAAGAGGT 58.549 45.455 0.00 0.00 34.88 3.85
427 445 4.034410 CCCTTAGAAGAGGTAGAAAGCCT 58.966 47.826 0.00 0.00 39.42 4.58
457 475 2.030096 AGAAAGAAGGACGAAGGACGAC 60.030 50.000 0.00 0.00 45.77 4.34
498 516 3.600388 AGTGGCCAGAAAATCGACTTAG 58.400 45.455 5.11 0.00 0.00 2.18
499 517 2.678336 GTGGCCAGAAAATCGACTTAGG 59.322 50.000 5.11 0.00 0.00 2.69
500 518 2.289565 GGCCAGAAAATCGACTTAGGG 58.710 52.381 0.00 0.00 0.00 3.53
501 519 1.671328 GCCAGAAAATCGACTTAGGGC 59.329 52.381 1.26 1.26 0.00 5.19
502 520 2.939640 GCCAGAAAATCGACTTAGGGCA 60.940 50.000 10.13 0.00 38.71 5.36
503 521 3.545703 CCAGAAAATCGACTTAGGGCAT 58.454 45.455 0.00 0.00 0.00 4.40
504 522 3.313526 CCAGAAAATCGACTTAGGGCATG 59.686 47.826 0.00 0.00 0.00 4.06
505 523 3.941483 CAGAAAATCGACTTAGGGCATGT 59.059 43.478 0.00 0.00 0.00 3.21
506 524 5.116180 CAGAAAATCGACTTAGGGCATGTA 58.884 41.667 0.00 0.00 0.00 2.29
507 525 5.006746 CAGAAAATCGACTTAGGGCATGTAC 59.993 44.000 0.00 0.00 0.00 2.90
508 526 4.481368 AAATCGACTTAGGGCATGTACA 57.519 40.909 0.00 0.00 0.00 2.90
509 527 4.481368 AATCGACTTAGGGCATGTACAA 57.519 40.909 0.00 0.00 0.00 2.41
510 528 4.689612 ATCGACTTAGGGCATGTACAAT 57.310 40.909 0.00 0.00 0.00 2.71
511 529 3.792401 TCGACTTAGGGCATGTACAATG 58.208 45.455 0.00 0.12 0.00 2.82
512 530 2.872245 CGACTTAGGGCATGTACAATGG 59.128 50.000 0.00 0.00 0.00 3.16
513 531 3.681594 CGACTTAGGGCATGTACAATGGT 60.682 47.826 0.00 0.00 0.00 3.55
514 532 4.270008 GACTTAGGGCATGTACAATGGTT 58.730 43.478 0.00 0.00 0.00 3.67
515 533 4.016444 ACTTAGGGCATGTACAATGGTTG 58.984 43.478 0.00 0.00 0.00 3.77
516 534 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
517 535 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
518 536 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
519 537 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
520 538 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
521 539 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
522 540 5.536161 GGGCATGTACAATGGTTGATAAGAT 59.464 40.000 0.00 0.00 0.00 2.40
523 541 6.714810 GGGCATGTACAATGGTTGATAAGATA 59.285 38.462 0.00 0.00 0.00 1.98
524 542 7.094634 GGGCATGTACAATGGTTGATAAGATAG 60.095 40.741 0.00 0.00 0.00 2.08
525 543 7.445402 GGCATGTACAATGGTTGATAAGATAGT 59.555 37.037 0.00 0.00 0.00 2.12
526 544 8.499162 GCATGTACAATGGTTGATAAGATAGTC 58.501 37.037 0.00 0.00 0.00 2.59
527 545 9.770097 CATGTACAATGGTTGATAAGATAGTCT 57.230 33.333 0.00 0.00 0.00 3.24
595 613 9.571810 CATGTCTATAATGAGTCATCTCTTAGC 57.428 37.037 5.98 3.65 40.98 3.09
596 614 8.116651 TGTCTATAATGAGTCATCTCTTAGCC 57.883 38.462 5.98 0.00 40.98 3.93
597 615 7.947332 TGTCTATAATGAGTCATCTCTTAGCCT 59.053 37.037 5.98 0.00 40.98 4.58
598 616 8.802267 GTCTATAATGAGTCATCTCTTAGCCTT 58.198 37.037 5.98 0.00 40.98 4.35
602 620 7.854166 AATGAGTCATCTCTTAGCCTTATCT 57.146 36.000 5.98 0.00 40.98 1.98
603 621 7.854166 ATGAGTCATCTCTTAGCCTTATCTT 57.146 36.000 0.00 0.00 40.98 2.40
604 622 7.283625 TGAGTCATCTCTTAGCCTTATCTTC 57.716 40.000 0.00 0.00 40.98 2.87
605 623 6.836007 TGAGTCATCTCTTAGCCTTATCTTCA 59.164 38.462 0.00 0.00 40.98 3.02
606 624 7.343057 TGAGTCATCTCTTAGCCTTATCTTCAA 59.657 37.037 0.00 0.00 40.98 2.69
607 625 8.261349 AGTCATCTCTTAGCCTTATCTTCAAT 57.739 34.615 0.00 0.00 0.00 2.57
608 626 9.373450 AGTCATCTCTTAGCCTTATCTTCAATA 57.627 33.333 0.00 0.00 0.00 1.90
609 627 9.988815 GTCATCTCTTAGCCTTATCTTCAATAA 57.011 33.333 0.00 0.00 0.00 1.40
656 674 7.849804 TGAGACAAATAAGATAAGACAAGCC 57.150 36.000 0.00 0.00 0.00 4.35
657 675 7.624549 TGAGACAAATAAGATAAGACAAGCCT 58.375 34.615 0.00 0.00 0.00 4.58
658 676 8.103305 TGAGACAAATAAGATAAGACAAGCCTT 58.897 33.333 0.00 0.00 0.00 4.35
659 677 8.499403 AGACAAATAAGATAAGACAAGCCTTC 57.501 34.615 0.00 0.00 0.00 3.46
660 678 8.325046 AGACAAATAAGATAAGACAAGCCTTCT 58.675 33.333 0.00 0.00 0.00 2.85
661 679 8.870075 ACAAATAAGATAAGACAAGCCTTCTT 57.130 30.769 0.00 0.00 37.14 2.52
662 680 9.301897 ACAAATAAGATAAGACAAGCCTTCTTT 57.698 29.630 0.00 0.00 34.99 2.52
668 686 9.692325 AAGATAAGACAAGCCTTCTTTTATGAT 57.308 29.630 0.00 0.00 34.99 2.45
669 687 9.692325 AGATAAGACAAGCCTTCTTTTATGATT 57.308 29.630 0.00 0.00 34.99 2.57
672 690 8.414629 AAGACAAGCCTTCTTTTATGATTTCT 57.585 30.769 0.00 0.00 28.36 2.52
673 691 8.049655 AGACAAGCCTTCTTTTATGATTTCTC 57.950 34.615 0.00 0.00 0.00 2.87
674 692 7.887495 AGACAAGCCTTCTTTTATGATTTCTCT 59.113 33.333 0.00 0.00 0.00 3.10
675 693 8.049655 ACAAGCCTTCTTTTATGATTTCTCTC 57.950 34.615 0.00 0.00 0.00 3.20
676 694 7.887495 ACAAGCCTTCTTTTATGATTTCTCTCT 59.113 33.333 0.00 0.00 0.00 3.10
677 695 8.397148 CAAGCCTTCTTTTATGATTTCTCTCTC 58.603 37.037 0.00 0.00 0.00 3.20
678 696 7.053498 AGCCTTCTTTTATGATTTCTCTCTCC 58.947 38.462 0.00 0.00 0.00 3.71
679 697 7.053498 GCCTTCTTTTATGATTTCTCTCTCCT 58.947 38.462 0.00 0.00 0.00 3.69
680 698 7.226523 GCCTTCTTTTATGATTTCTCTCTCCTC 59.773 40.741 0.00 0.00 0.00 3.71
681 699 8.485392 CCTTCTTTTATGATTTCTCTCTCCTCT 58.515 37.037 0.00 0.00 0.00 3.69
684 702 8.919145 TCTTTTATGATTTCTCTCTCCTCTACC 58.081 37.037 0.00 0.00 0.00 3.18
685 703 8.846423 TTTTATGATTTCTCTCTCCTCTACCT 57.154 34.615 0.00 0.00 0.00 3.08
686 704 8.472007 TTTATGATTTCTCTCTCCTCTACCTC 57.528 38.462 0.00 0.00 0.00 3.85
687 705 5.458451 TGATTTCTCTCTCCTCTACCTCA 57.542 43.478 0.00 0.00 0.00 3.86
688 706 6.024563 TGATTTCTCTCTCCTCTACCTCAT 57.975 41.667 0.00 0.00 0.00 2.90
689 707 6.068010 TGATTTCTCTCTCCTCTACCTCATC 58.932 44.000 0.00 0.00 0.00 2.92
690 708 5.458451 TTTCTCTCTCCTCTACCTCATCA 57.542 43.478 0.00 0.00 0.00 3.07
691 709 5.661503 TTCTCTCTCCTCTACCTCATCAT 57.338 43.478 0.00 0.00 0.00 2.45
692 710 5.661503 TCTCTCTCCTCTACCTCATCATT 57.338 43.478 0.00 0.00 0.00 2.57
693 711 6.024563 TCTCTCTCCTCTACCTCATCATTT 57.975 41.667 0.00 0.00 0.00 2.32
694 712 7.155442 TCTCTCTCCTCTACCTCATCATTTA 57.845 40.000 0.00 0.00 0.00 1.40
695 713 7.764617 TCTCTCTCCTCTACCTCATCATTTAT 58.235 38.462 0.00 0.00 0.00 1.40
696 714 7.888021 TCTCTCTCCTCTACCTCATCATTTATC 59.112 40.741 0.00 0.00 0.00 1.75
697 715 6.951198 TCTCTCCTCTACCTCATCATTTATCC 59.049 42.308 0.00 0.00 0.00 2.59
698 716 6.868826 TCTCCTCTACCTCATCATTTATCCT 58.131 40.000 0.00 0.00 0.00 3.24
699 717 8.001300 TCTCCTCTACCTCATCATTTATCCTA 57.999 38.462 0.00 0.00 0.00 2.94
700 718 7.891183 TCTCCTCTACCTCATCATTTATCCTAC 59.109 40.741 0.00 0.00 0.00 3.18
701 719 6.659668 TCCTCTACCTCATCATTTATCCTACG 59.340 42.308 0.00 0.00 0.00 3.51
702 720 6.434652 CCTCTACCTCATCATTTATCCTACGT 59.565 42.308 0.00 0.00 0.00 3.57
703 721 7.215719 TCTACCTCATCATTTATCCTACGTG 57.784 40.000 0.00 0.00 0.00 4.49
704 722 5.215252 ACCTCATCATTTATCCTACGTGG 57.785 43.478 0.00 0.00 37.10 4.94
705 723 3.997021 CCTCATCATTTATCCTACGTGGC 59.003 47.826 0.00 0.00 35.26 5.01
706 724 4.503123 CCTCATCATTTATCCTACGTGGCA 60.503 45.833 0.00 0.00 35.26 4.92
707 725 4.377021 TCATCATTTATCCTACGTGGCAC 58.623 43.478 7.79 7.79 35.26 5.01
708 726 4.100963 TCATCATTTATCCTACGTGGCACT 59.899 41.667 16.72 5.47 35.26 4.40
709 727 3.792401 TCATTTATCCTACGTGGCACTG 58.208 45.455 16.72 11.66 35.26 3.66
710 728 3.196901 TCATTTATCCTACGTGGCACTGT 59.803 43.478 16.72 16.72 35.26 3.55
711 729 3.688694 TTTATCCTACGTGGCACTGTT 57.311 42.857 16.72 2.24 35.26 3.16
712 730 4.804868 TTTATCCTACGTGGCACTGTTA 57.195 40.909 16.72 3.36 35.26 2.41
713 731 4.804868 TTATCCTACGTGGCACTGTTAA 57.195 40.909 16.72 7.91 35.26 2.01
714 732 2.736144 TCCTACGTGGCACTGTTAAG 57.264 50.000 16.72 9.99 35.26 1.85
715 733 2.241160 TCCTACGTGGCACTGTTAAGA 58.759 47.619 16.72 9.59 35.26 2.10
716 734 2.829720 TCCTACGTGGCACTGTTAAGAT 59.170 45.455 16.72 0.00 35.26 2.40
717 735 4.018490 TCCTACGTGGCACTGTTAAGATA 58.982 43.478 16.72 0.00 35.26 1.98
718 736 4.097437 TCCTACGTGGCACTGTTAAGATAG 59.903 45.833 16.72 8.11 35.26 2.08
719 737 4.097437 CCTACGTGGCACTGTTAAGATAGA 59.903 45.833 16.72 0.00 0.00 1.98
720 738 4.530710 ACGTGGCACTGTTAAGATAGAA 57.469 40.909 16.72 0.00 0.00 2.10
721 739 4.243270 ACGTGGCACTGTTAAGATAGAAC 58.757 43.478 16.72 0.00 0.00 3.01
722 740 3.617263 CGTGGCACTGTTAAGATAGAACC 59.383 47.826 16.72 0.00 0.00 3.62
723 741 4.575885 GTGGCACTGTTAAGATAGAACCA 58.424 43.478 11.13 0.00 0.00 3.67
724 742 5.186198 GTGGCACTGTTAAGATAGAACCAT 58.814 41.667 11.13 0.00 30.29 3.55
725 743 5.648092 GTGGCACTGTTAAGATAGAACCATT 59.352 40.000 11.13 0.00 30.29 3.16
726 744 5.647658 TGGCACTGTTAAGATAGAACCATTG 59.352 40.000 0.00 0.00 0.00 2.82
727 745 5.648092 GGCACTGTTAAGATAGAACCATTGT 59.352 40.000 0.00 0.00 0.00 2.71
728 746 6.821665 GGCACTGTTAAGATAGAACCATTGTA 59.178 38.462 0.00 0.00 0.00 2.41
729 747 7.201617 GGCACTGTTAAGATAGAACCATTGTAC 60.202 40.741 0.00 0.00 0.00 2.90
730 748 7.333423 GCACTGTTAAGATAGAACCATTGTACA 59.667 37.037 0.00 0.00 0.00 2.90
731 749 9.383519 CACTGTTAAGATAGAACCATTGTACAT 57.616 33.333 0.00 0.00 0.00 2.29
732 750 9.383519 ACTGTTAAGATAGAACCATTGTACATG 57.616 33.333 0.00 0.00 0.00 3.21
733 751 8.208718 TGTTAAGATAGAACCATTGTACATGC 57.791 34.615 0.00 0.00 0.00 4.06
734 752 7.282224 TGTTAAGATAGAACCATTGTACATGCC 59.718 37.037 0.00 0.00 0.00 4.40
735 753 4.718961 AGATAGAACCATTGTACATGCCC 58.281 43.478 0.00 0.00 0.00 5.36
736 754 4.413520 AGATAGAACCATTGTACATGCCCT 59.586 41.667 0.00 0.00 0.00 5.19
737 755 3.456380 AGAACCATTGTACATGCCCTT 57.544 42.857 0.00 0.00 0.00 3.95
738 756 4.584638 AGAACCATTGTACATGCCCTTA 57.415 40.909 0.00 0.00 0.00 2.69
739 757 5.129368 AGAACCATTGTACATGCCCTTAT 57.871 39.130 0.00 0.00 0.00 1.73
740 758 6.260700 AGAACCATTGTACATGCCCTTATA 57.739 37.500 0.00 0.00 0.00 0.98
781 800 7.923414 AAGACTTACATAAATGTCACTTCCC 57.077 36.000 0.00 0.00 41.97 3.97
785 804 9.391006 GACTTACATAAATGTCACTTCCCATAA 57.609 33.333 0.00 0.00 41.97 1.90
786 805 9.747898 ACTTACATAAATGTCACTTCCCATAAA 57.252 29.630 0.00 0.00 41.97 1.40
796 815 8.770438 TGTCACTTCCCATAAAATATTTTTGC 57.230 30.769 18.14 5.87 0.00 3.68
797 816 8.370940 TGTCACTTCCCATAAAATATTTTTGCA 58.629 29.630 18.14 1.70 0.00 4.08
798 817 9.213799 GTCACTTCCCATAAAATATTTTTGCAA 57.786 29.630 18.14 0.00 0.00 4.08
799 818 9.213799 TCACTTCCCATAAAATATTTTTGCAAC 57.786 29.630 18.14 0.00 0.00 4.17
824 845 6.485313 CCACTTCCGATAAATTTACATGGCTA 59.515 38.462 0.00 0.00 0.00 3.93
874 897 0.108585 TCCTTCACCACACAAGCTCC 59.891 55.000 0.00 0.00 0.00 4.70
885 908 1.152567 CAAGCTCCCCACCAAACCA 60.153 57.895 0.00 0.00 0.00 3.67
927 950 6.631540 GCCCTAATATAGCCATCTCTTCTTCC 60.632 46.154 0.00 0.00 0.00 3.46
956 979 4.452733 CGGGTCTCCCTCGCAACC 62.453 72.222 3.25 0.00 42.67 3.77
1056 1268 2.358615 GCCATGGACGAGCACACA 60.359 61.111 18.40 0.00 0.00 3.72
1059 1271 1.004560 CATGGACGAGCACACAGGT 60.005 57.895 0.00 0.00 0.00 4.00
1079 1294 3.423154 GGCGCCGTCCACTTGAAG 61.423 66.667 12.58 0.00 0.00 3.02
1080 1295 3.423154 GCGCCGTCCACTTGAAGG 61.423 66.667 0.00 0.00 44.64 3.46
1718 1933 3.909258 GACCCGCATGACGTGTCGT 62.909 63.158 0.00 0.00 39.34 4.34
2005 2223 2.792890 CGTGCTCATCTTCTACCTCACG 60.793 54.545 0.00 0.00 39.68 4.35
2251 3569 3.471806 GACCCGGAGAAGGAGCCC 61.472 72.222 0.73 0.00 0.00 5.19
2545 3876 0.670546 ACGATGAGTTCAAGGTGCGG 60.671 55.000 0.00 0.00 0.00 5.69
2668 3999 1.228552 GGAGCAGCCCAAGGTCAAA 60.229 57.895 0.00 0.00 35.30 2.69
2734 4068 2.418910 CGTCTCCTCGCCTGACCAT 61.419 63.158 0.00 0.00 0.00 3.55
2801 4188 2.750888 CGCCGGAACTTTGCCTAGC 61.751 63.158 5.05 0.00 0.00 3.42
2803 4190 0.107848 GCCGGAACTTTGCCTAGCTA 60.108 55.000 5.05 0.00 0.00 3.32
2804 4191 1.941325 CCGGAACTTTGCCTAGCTAG 58.059 55.000 14.20 14.20 0.00 3.42
2806 4193 2.354805 CCGGAACTTTGCCTAGCTAGTT 60.355 50.000 19.31 8.48 37.05 2.24
2809 4196 4.072839 GGAACTTTGCCTAGCTAGTTGTT 58.927 43.478 19.31 14.52 35.53 2.83
3393 4789 0.605589 CCAACTTCAAGGACCCCGAC 60.606 60.000 0.00 0.00 0.00 4.79
3441 4837 4.415332 TTCGACGCCGAGCTCACC 62.415 66.667 15.40 2.34 46.39 4.02
3708 5104 1.006102 CACAGAGGACGTGGTCACC 60.006 63.158 0.00 0.00 33.68 4.02
3762 5158 2.271800 GTCTACTGGATCAGCAAACGG 58.728 52.381 0.00 0.00 34.37 4.44
3765 5161 0.620556 ACTGGATCAGCAAACGGGAT 59.379 50.000 0.00 0.00 34.37 3.85
3818 5214 2.738521 CCGACTGCACCAGGTTCG 60.739 66.667 4.62 4.62 35.51 3.95
3826 5222 1.172812 GCACCAGGTTCGCTCCTTTT 61.173 55.000 0.00 0.00 35.37 2.27
3827 5223 1.318576 CACCAGGTTCGCTCCTTTTT 58.681 50.000 0.00 0.00 35.37 1.94
3828 5224 1.001378 CACCAGGTTCGCTCCTTTTTG 60.001 52.381 0.00 0.00 35.37 2.44
3835 5231 3.304458 GGTTCGCTCCTTTTTGTTCGAAT 60.304 43.478 0.00 0.00 38.06 3.34
3839 5235 4.215399 TCGCTCCTTTTTGTTCGAATCATT 59.785 37.500 0.00 0.00 0.00 2.57
3855 5251 9.967245 TTCGAATCATTAATAAGAAAGTTGACG 57.033 29.630 0.00 0.00 0.00 4.35
3856 5252 9.146984 TCGAATCATTAATAAGAAAGTTGACGT 57.853 29.630 0.00 0.00 0.00 4.34
3887 5283 6.884295 TCATAGAAACGAAAAGGGTTGATCAT 59.116 34.615 0.00 0.00 0.00 2.45
3888 5284 7.393234 TCATAGAAACGAAAAGGGTTGATCATT 59.607 33.333 0.00 0.00 0.00 2.57
3891 5287 7.368059 AGAAACGAAAAGGGTTGATCATTTAC 58.632 34.615 0.00 0.00 0.00 2.01
3894 5290 5.533154 ACGAAAAGGGTTGATCATTTACACA 59.467 36.000 0.00 0.00 0.00 3.72
3914 5310 2.172851 TGTGTTACCGGTGAATGACC 57.827 50.000 19.93 0.00 42.07 4.02
3926 5322 2.614057 GTGAATGACCATCGAACCATCC 59.386 50.000 0.00 0.00 0.00 3.51
4042 5438 2.562912 GCGTACCTCAACGTCGGA 59.437 61.111 5.61 0.00 44.64 4.55
4169 5565 1.283905 TCTACCTCCTCACCATCACGA 59.716 52.381 0.00 0.00 0.00 4.35
4216 5612 0.326264 AGGTCAAGTGGTCAGGCATC 59.674 55.000 0.00 0.00 0.00 3.91
4281 5677 1.645455 GCACGCGCATCATGAATCT 59.355 52.632 5.73 0.00 38.36 2.40
4288 5684 3.720051 CGCGCATCATGAATCTTGATACG 60.720 47.826 20.59 20.59 41.24 3.06
4292 5688 4.751600 GCATCATGAATCTTGATACGGACA 59.248 41.667 10.69 0.00 32.63 4.02
4315 5711 2.575279 CCTAGCTAGGGTCCCGATACTA 59.425 54.545 29.47 2.78 39.86 1.82
4329 5725 2.494471 CGATACTAACCTGACCACCACA 59.506 50.000 0.00 0.00 0.00 4.17
4333 5729 2.038557 ACTAACCTGACCACCACATGTC 59.961 50.000 0.00 0.00 0.00 3.06
4469 5865 2.181021 GCCGACGACAACGAGGAT 59.819 61.111 0.00 0.00 42.66 3.24
4481 5877 2.110901 ACGAGGATATCTACGCGGAT 57.889 50.000 12.47 7.12 0.00 4.18
4580 5976 1.883084 CTTCGCCCGCACCATCTAC 60.883 63.158 0.00 0.00 0.00 2.59
4839 6235 7.288810 TGATAAAATAGGGTGATGGAAATGC 57.711 36.000 0.00 0.00 0.00 3.56
4840 6236 6.267471 TGATAAAATAGGGTGATGGAAATGCC 59.733 38.462 0.00 0.00 37.10 4.40
4961 6357 5.571357 GTCGTTGTGTTGTGTTCTTCAAAAT 59.429 36.000 0.00 0.00 0.00 1.82
5036 6432 0.779997 AGGAGTGGGCCAATGTTTCT 59.220 50.000 13.03 0.16 0.00 2.52
5048 6444 4.943705 GCCAATGTTTCTGTAGAGGAATGA 59.056 41.667 0.00 0.00 0.00 2.57
5105 6501 5.483937 TGATAGAGCCATGGACCGTAATATT 59.516 40.000 18.40 0.00 0.00 1.28
5107 6503 5.048846 AGAGCCATGGACCGTAATATTTT 57.951 39.130 18.40 0.00 0.00 1.82
5108 6504 5.445964 AGAGCCATGGACCGTAATATTTTT 58.554 37.500 18.40 0.00 0.00 1.94
5109 6505 6.597562 AGAGCCATGGACCGTAATATTTTTA 58.402 36.000 18.40 0.00 0.00 1.52
5181 6698 5.098893 CCAGTTTCGAATACAGAGTCAGAG 58.901 45.833 0.00 0.00 0.00 3.35
5350 8092 5.991933 ACATGCCAACACACCAAAATATA 57.008 34.783 0.00 0.00 0.00 0.86
5351 8093 6.543430 ACATGCCAACACACCAAAATATAT 57.457 33.333 0.00 0.00 0.00 0.86
5467 10231 0.173481 CTTCACGCTCCTCCAATCGA 59.827 55.000 0.00 0.00 0.00 3.59
5716 11099 8.566109 ACCAACAGTATAAAATTTATCCCCTCT 58.434 33.333 0.96 0.00 0.00 3.69
5721 11104 9.067986 CAGTATAAAATTTATCCCCTCTTGGAC 57.932 37.037 0.96 0.00 37.20 4.02
5722 11105 8.225416 AGTATAAAATTTATCCCCTCTTGGACC 58.775 37.037 0.96 0.00 37.20 4.46
5723 11106 4.965283 AAATTTATCCCCTCTTGGACCA 57.035 40.909 0.00 0.00 37.20 4.02
5724 11107 5.487861 AAATTTATCCCCTCTTGGACCAT 57.512 39.130 0.00 0.00 37.20 3.55
5725 11108 6.606241 AAATTTATCCCCTCTTGGACCATA 57.394 37.500 0.00 0.00 37.20 2.74
5726 11109 6.606241 AATTTATCCCCTCTTGGACCATAA 57.394 37.500 0.00 0.00 37.20 1.90
5727 11110 6.803587 ATTTATCCCCTCTTGGACCATAAT 57.196 37.500 0.00 0.00 37.20 1.28
5728 11111 7.905144 ATTTATCCCCTCTTGGACCATAATA 57.095 36.000 0.00 0.00 37.20 0.98
5729 11112 7.905144 TTTATCCCCTCTTGGACCATAATAT 57.095 36.000 0.00 0.00 37.20 1.28
5730 11113 5.786121 ATCCCCTCTTGGACCATAATATG 57.214 43.478 0.00 0.00 37.20 1.78
5731 11114 4.577096 TCCCCTCTTGGACCATAATATGT 58.423 43.478 0.00 0.00 35.39 2.29
5843 14953 8.918961 TTTCTATTGTGAACGTTGACATTTTT 57.081 26.923 21.13 9.35 0.00 1.94
5924 15036 6.936968 AGAAAAACAGAGGGAGTACTATGT 57.063 37.500 0.00 0.00 44.12 2.29
5938 15050 5.888105 AGTACTATGTAGCGTAACAGGTTG 58.112 41.667 0.00 0.00 31.70 3.77
5939 15051 4.796038 ACTATGTAGCGTAACAGGTTGT 57.204 40.909 0.00 0.00 31.70 3.32
5940 15052 4.491676 ACTATGTAGCGTAACAGGTTGTG 58.508 43.478 0.00 0.00 31.70 3.33
5941 15053 1.504359 TGTAGCGTAACAGGTTGTGC 58.496 50.000 0.00 0.00 0.00 4.57
5942 15054 1.202545 TGTAGCGTAACAGGTTGTGCA 60.203 47.619 11.31 0.00 0.00 4.57
5943 15055 1.868498 GTAGCGTAACAGGTTGTGCAA 59.132 47.619 11.31 0.00 0.00 4.08
5944 15056 0.944386 AGCGTAACAGGTTGTGCAAG 59.056 50.000 11.31 0.00 0.00 4.01
5945 15057 0.661020 GCGTAACAGGTTGTGCAAGT 59.339 50.000 0.00 0.00 0.00 3.16
5986 15100 0.250553 GAACATGTCCGGTTGGTCCA 60.251 55.000 0.00 0.00 36.30 4.02
5992 15106 2.203422 CCGGTTGGTCCAAGGCAA 60.203 61.111 3.96 0.00 35.57 4.52
6016 15130 2.350804 CACTTCATCGCATCAAGACCTG 59.649 50.000 0.00 0.00 0.00 4.00
6074 15188 3.708734 GTGAACCCGCCGTCAACG 61.709 66.667 0.00 0.00 39.44 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.668047 CCTGTCTTTGTACGACCCGTC 60.668 57.143 0.00 0.00 41.54 4.79
6 7 0.389426 CCCTGTCTTTGTACGACCCG 60.389 60.000 0.00 0.00 0.00 5.28
7 8 0.683412 ACCCTGTCTTTGTACGACCC 59.317 55.000 0.00 0.00 0.00 4.46
8 9 2.538512 AACCCTGTCTTTGTACGACC 57.461 50.000 0.00 0.00 0.00 4.79
9 10 3.200483 ACAAACCCTGTCTTTGTACGAC 58.800 45.455 0.00 0.00 39.53 4.34
11 12 4.095185 TGAAACAAACCCTGTCTTTGTACG 59.905 41.667 0.00 0.00 40.24 3.67
12 13 5.355910 TCTGAAACAAACCCTGTCTTTGTAC 59.644 40.000 0.00 0.00 40.24 2.90
13 14 5.355910 GTCTGAAACAAACCCTGTCTTTGTA 59.644 40.000 0.00 0.00 40.24 2.41
14 15 4.157840 GTCTGAAACAAACCCTGTCTTTGT 59.842 41.667 0.00 0.00 42.41 2.83
15 16 4.399303 AGTCTGAAACAAACCCTGTCTTTG 59.601 41.667 0.00 0.00 37.23 2.77
16 17 4.600062 AGTCTGAAACAAACCCTGTCTTT 58.400 39.130 0.00 0.00 37.23 2.52
17 18 4.236527 AGTCTGAAACAAACCCTGTCTT 57.763 40.909 0.00 0.00 37.23 3.01
18 19 3.933861 AGTCTGAAACAAACCCTGTCT 57.066 42.857 0.00 0.00 37.23 3.41
19 20 3.945285 TGAAGTCTGAAACAAACCCTGTC 59.055 43.478 0.00 0.00 37.23 3.51
20 21 3.694566 GTGAAGTCTGAAACAAACCCTGT 59.305 43.478 0.00 0.00 41.27 4.00
21 22 3.947834 AGTGAAGTCTGAAACAAACCCTG 59.052 43.478 0.00 0.00 0.00 4.45
22 23 4.200092 GAGTGAAGTCTGAAACAAACCCT 58.800 43.478 0.00 0.00 0.00 4.34
23 24 3.315470 GGAGTGAAGTCTGAAACAAACCC 59.685 47.826 0.00 0.00 0.00 4.11
24 25 3.002348 CGGAGTGAAGTCTGAAACAAACC 59.998 47.826 0.00 0.00 0.00 3.27
25 26 3.869246 TCGGAGTGAAGTCTGAAACAAAC 59.131 43.478 0.00 0.00 0.00 2.93
26 27 4.119862 CTCGGAGTGAAGTCTGAAACAAA 58.880 43.478 0.00 0.00 31.25 2.83
27 28 3.383505 TCTCGGAGTGAAGTCTGAAACAA 59.616 43.478 4.69 0.00 31.25 2.83
28 29 2.956333 TCTCGGAGTGAAGTCTGAAACA 59.044 45.455 4.69 0.00 31.25 2.83
29 30 3.644884 TCTCGGAGTGAAGTCTGAAAC 57.355 47.619 4.69 0.00 31.25 2.78
30 31 3.056536 CCATCTCGGAGTGAAGTCTGAAA 60.057 47.826 4.69 0.00 36.56 2.69
31 32 2.493675 CCATCTCGGAGTGAAGTCTGAA 59.506 50.000 4.69 0.00 36.56 3.02
32 33 2.095461 CCATCTCGGAGTGAAGTCTGA 58.905 52.381 4.69 0.00 36.56 3.27
33 34 2.095461 TCCATCTCGGAGTGAAGTCTG 58.905 52.381 4.69 0.00 39.64 3.51
34 35 2.516227 TCCATCTCGGAGTGAAGTCT 57.484 50.000 4.69 0.00 39.64 3.24
43 44 1.000019 ACCCTTCGTCCATCTCGGA 60.000 57.895 0.00 0.00 43.61 4.55
44 45 1.141881 CACCCTTCGTCCATCTCGG 59.858 63.158 0.00 0.00 0.00 4.63
45 46 1.141881 CCACCCTTCGTCCATCTCG 59.858 63.158 0.00 0.00 0.00 4.04
46 47 1.522569 CCCACCCTTCGTCCATCTC 59.477 63.158 0.00 0.00 0.00 2.75
47 48 1.995626 CCCCACCCTTCGTCCATCT 60.996 63.158 0.00 0.00 0.00 2.90
48 49 2.590092 CCCCACCCTTCGTCCATC 59.410 66.667 0.00 0.00 0.00 3.51
49 50 3.728373 GCCCCACCCTTCGTCCAT 61.728 66.667 0.00 0.00 0.00 3.41
51 52 3.920093 CTTGCCCCACCCTTCGTCC 62.920 68.421 0.00 0.00 0.00 4.79
52 53 2.198304 ATCTTGCCCCACCCTTCGTC 62.198 60.000 0.00 0.00 0.00 4.20
53 54 2.231380 ATCTTGCCCCACCCTTCGT 61.231 57.895 0.00 0.00 0.00 3.85
54 55 1.750399 CATCTTGCCCCACCCTTCG 60.750 63.158 0.00 0.00 0.00 3.79
55 56 0.967380 CACATCTTGCCCCACCCTTC 60.967 60.000 0.00 0.00 0.00 3.46
56 57 1.077265 CACATCTTGCCCCACCCTT 59.923 57.895 0.00 0.00 0.00 3.95
57 58 2.765969 CACATCTTGCCCCACCCT 59.234 61.111 0.00 0.00 0.00 4.34
58 59 2.362889 CCACATCTTGCCCCACCC 60.363 66.667 0.00 0.00 0.00 4.61
59 60 1.678970 GACCACATCTTGCCCCACC 60.679 63.158 0.00 0.00 0.00 4.61
60 61 2.040544 CGACCACATCTTGCCCCAC 61.041 63.158 0.00 0.00 0.00 4.61
61 62 2.350895 CGACCACATCTTGCCCCA 59.649 61.111 0.00 0.00 0.00 4.96
62 63 3.134127 GCGACCACATCTTGCCCC 61.134 66.667 0.00 0.00 0.00 5.80
63 64 1.675641 AAGCGACCACATCTTGCCC 60.676 57.895 0.00 0.00 0.00 5.36
64 65 1.503542 CAAGCGACCACATCTTGCC 59.496 57.895 0.00 0.00 32.07 4.52
65 66 1.503542 CCAAGCGACCACATCTTGC 59.496 57.895 0.00 0.00 36.72 4.01
66 67 1.236616 TGCCAAGCGACCACATCTTG 61.237 55.000 0.00 0.00 37.52 3.02
67 68 0.957395 CTGCCAAGCGACCACATCTT 60.957 55.000 0.00 0.00 0.00 2.40
68 69 1.376424 CTGCCAAGCGACCACATCT 60.376 57.895 0.00 0.00 0.00 2.90
69 70 2.401766 CCTGCCAAGCGACCACATC 61.402 63.158 0.00 0.00 0.00 3.06
70 71 2.360350 CCTGCCAAGCGACCACAT 60.360 61.111 0.00 0.00 0.00 3.21
71 72 2.616797 TTTCCTGCCAAGCGACCACA 62.617 55.000 0.00 0.00 0.00 4.17
72 73 1.452145 TTTTCCTGCCAAGCGACCAC 61.452 55.000 0.00 0.00 0.00 4.16
73 74 0.539438 ATTTTCCTGCCAAGCGACCA 60.539 50.000 0.00 0.00 0.00 4.02
74 75 0.109132 CATTTTCCTGCCAAGCGACC 60.109 55.000 0.00 0.00 0.00 4.79
75 76 0.881118 TCATTTTCCTGCCAAGCGAC 59.119 50.000 0.00 0.00 0.00 5.19
76 77 1.269448 GTTCATTTTCCTGCCAAGCGA 59.731 47.619 0.00 0.00 0.00 4.93
77 78 1.000385 TGTTCATTTTCCTGCCAAGCG 60.000 47.619 0.00 0.00 0.00 4.68
78 79 2.224018 TGTGTTCATTTTCCTGCCAAGC 60.224 45.455 0.00 0.00 0.00 4.01
79 80 3.731652 TGTGTTCATTTTCCTGCCAAG 57.268 42.857 0.00 0.00 0.00 3.61
80 81 4.686191 AATGTGTTCATTTTCCTGCCAA 57.314 36.364 0.00 0.00 40.88 4.52
81 82 4.220382 CCTAATGTGTTCATTTTCCTGCCA 59.780 41.667 0.00 0.00 43.12 4.92
82 83 4.462483 TCCTAATGTGTTCATTTTCCTGCC 59.538 41.667 0.00 0.00 43.12 4.85
83 84 5.183904 ACTCCTAATGTGTTCATTTTCCTGC 59.816 40.000 0.00 0.00 43.12 4.85
84 85 6.824305 ACTCCTAATGTGTTCATTTTCCTG 57.176 37.500 0.00 0.00 43.12 3.86
85 86 9.838339 CTATACTCCTAATGTGTTCATTTTCCT 57.162 33.333 0.00 0.00 43.12 3.36
86 87 9.832445 TCTATACTCCTAATGTGTTCATTTTCC 57.168 33.333 0.00 0.00 43.12 3.13
92 93 9.653287 CTTTTGTCTATACTCCTAATGTGTTCA 57.347 33.333 0.00 0.00 0.00 3.18
93 94 9.871238 TCTTTTGTCTATACTCCTAATGTGTTC 57.129 33.333 0.00 0.00 0.00 3.18
103 104 9.810545 GCCATCTATATCTTTTGTCTATACTCC 57.189 37.037 0.00 0.00 0.00 3.85
110 111 8.884323 TCCTAATGCCATCTATATCTTTTGTCT 58.116 33.333 0.00 0.00 0.00 3.41
111 112 9.507329 TTCCTAATGCCATCTATATCTTTTGTC 57.493 33.333 0.00 0.00 0.00 3.18
112 113 9.866655 TTTCCTAATGCCATCTATATCTTTTGT 57.133 29.630 0.00 0.00 0.00 2.83
118 119 9.606631 CCTAACTTTCCTAATGCCATCTATATC 57.393 37.037 0.00 0.00 0.00 1.63
119 120 9.338968 TCCTAACTTTCCTAATGCCATCTATAT 57.661 33.333 0.00 0.00 0.00 0.86
120 121 8.736097 TCCTAACTTTCCTAATGCCATCTATA 57.264 34.615 0.00 0.00 0.00 1.31
121 122 7.633018 TCCTAACTTTCCTAATGCCATCTAT 57.367 36.000 0.00 0.00 0.00 1.98
122 123 7.633018 ATCCTAACTTTCCTAATGCCATCTA 57.367 36.000 0.00 0.00 0.00 1.98
123 124 5.975988 TCCTAACTTTCCTAATGCCATCT 57.024 39.130 0.00 0.00 0.00 2.90
124 125 7.588497 AAATCCTAACTTTCCTAATGCCATC 57.412 36.000 0.00 0.00 0.00 3.51
125 126 8.502738 TCTAAATCCTAACTTTCCTAATGCCAT 58.497 33.333 0.00 0.00 0.00 4.40
126 127 7.867921 TCTAAATCCTAACTTTCCTAATGCCA 58.132 34.615 0.00 0.00 0.00 4.92
127 128 8.747538 TTCTAAATCCTAACTTTCCTAATGCC 57.252 34.615 0.00 0.00 0.00 4.40
168 169 9.853555 AGCACGTTATCAATCAATAAAATTCAA 57.146 25.926 0.00 0.00 0.00 2.69
185 186 4.335594 GGGCAAGAAAAGATAGCACGTTAT 59.664 41.667 0.00 0.00 0.00 1.89
189 190 1.062587 CGGGCAAGAAAAGATAGCACG 59.937 52.381 0.00 0.00 45.99 5.34
190 191 2.084546 ACGGGCAAGAAAAGATAGCAC 58.915 47.619 0.00 0.00 0.00 4.40
198 199 4.142138 ACATGTTACAAACGGGCAAGAAAA 60.142 37.500 0.00 0.00 0.00 2.29
276 277 2.550855 CCATCATATCTCCCCGTGTTGG 60.551 54.545 0.00 0.00 37.55 3.77
278 279 2.104792 CACCATCATATCTCCCCGTGTT 59.895 50.000 0.00 0.00 0.00 3.32
280 281 1.002430 CCACCATCATATCTCCCCGTG 59.998 57.143 0.00 0.00 0.00 4.94
281 282 1.352083 CCACCATCATATCTCCCCGT 58.648 55.000 0.00 0.00 0.00 5.28
282 283 0.615331 CCCACCATCATATCTCCCCG 59.385 60.000 0.00 0.00 0.00 5.73
283 284 2.044793 TCCCACCATCATATCTCCCC 57.955 55.000 0.00 0.00 0.00 4.81
294 296 3.992943 TTTCGTCTTACATCCCACCAT 57.007 42.857 0.00 0.00 0.00 3.55
306 308 4.886247 TTTCGTTGGTTCATTTCGTCTT 57.114 36.364 0.00 0.00 0.00 3.01
316 318 3.976306 CCACGGTTTATTTTCGTTGGTTC 59.024 43.478 0.00 0.00 34.73 3.62
339 357 8.099537 CCTAATGGAGCAGTTGATGAATAGTAT 58.900 37.037 0.00 0.00 34.57 2.12
340 358 7.290014 TCCTAATGGAGCAGTTGATGAATAGTA 59.710 37.037 0.00 0.00 37.46 1.82
341 359 6.100279 TCCTAATGGAGCAGTTGATGAATAGT 59.900 38.462 0.00 0.00 37.46 2.12
342 360 6.528321 TCCTAATGGAGCAGTTGATGAATAG 58.472 40.000 0.00 0.00 37.46 1.73
343 361 6.499106 TCCTAATGGAGCAGTTGATGAATA 57.501 37.500 0.00 0.00 37.46 1.75
344 362 5.378230 TCCTAATGGAGCAGTTGATGAAT 57.622 39.130 0.00 0.00 37.46 2.57
357 375 5.623551 ATCCCATCTCTACTCCTAATGGA 57.376 43.478 1.32 0.00 39.39 3.41
358 376 5.570439 GCAATCCCATCTCTACTCCTAATGG 60.570 48.000 0.00 0.00 37.27 3.16
367 385 7.710676 TCTATCTTAGCAATCCCATCTCTAC 57.289 40.000 0.00 0.00 0.00 2.59
374 392 5.912149 ATGGTTCTATCTTAGCAATCCCA 57.088 39.130 0.00 0.00 0.00 4.37
375 393 6.064717 ACAATGGTTCTATCTTAGCAATCCC 58.935 40.000 0.00 0.00 0.00 3.85
376 394 7.715249 TGTACAATGGTTCTATCTTAGCAATCC 59.285 37.037 0.00 0.00 0.00 3.01
379 397 7.012327 GCATGTACAATGGTTCTATCTTAGCAA 59.988 37.037 0.00 0.00 0.00 3.91
380 398 6.483307 GCATGTACAATGGTTCTATCTTAGCA 59.517 38.462 0.00 0.00 0.00 3.49
381 399 6.073003 GGCATGTACAATGGTTCTATCTTAGC 60.073 42.308 0.00 0.00 0.00 3.09
382 400 6.428159 GGGCATGTACAATGGTTCTATCTTAG 59.572 42.308 0.00 0.00 0.00 2.18
383 401 6.101150 AGGGCATGTACAATGGTTCTATCTTA 59.899 38.462 0.00 0.00 0.00 2.10
384 402 5.103940 AGGGCATGTACAATGGTTCTATCTT 60.104 40.000 0.00 0.00 0.00 2.40
386 404 4.718961 AGGGCATGTACAATGGTTCTATC 58.281 43.478 0.00 0.00 0.00 2.08
387 405 4.796110 AGGGCATGTACAATGGTTCTAT 57.204 40.909 0.00 0.00 0.00 1.98
389 407 3.456380 AAGGGCATGTACAATGGTTCT 57.544 42.857 0.00 0.00 0.00 3.01
390 408 4.523083 TCTAAGGGCATGTACAATGGTTC 58.477 43.478 0.00 0.00 0.00 3.62
391 409 4.584638 TCTAAGGGCATGTACAATGGTT 57.415 40.909 0.00 0.00 0.00 3.67
392 410 4.227300 TCTTCTAAGGGCATGTACAATGGT 59.773 41.667 0.00 0.00 0.00 3.55
393 411 4.780815 TCTTCTAAGGGCATGTACAATGG 58.219 43.478 0.00 0.00 0.00 3.16
394 412 4.818546 CCTCTTCTAAGGGCATGTACAATG 59.181 45.833 0.00 0.12 32.35 2.82
395 413 4.475016 ACCTCTTCTAAGGGCATGTACAAT 59.525 41.667 0.00 0.00 41.04 2.71
396 414 3.844211 ACCTCTTCTAAGGGCATGTACAA 59.156 43.478 0.00 0.00 41.04 2.41
397 415 3.450904 ACCTCTTCTAAGGGCATGTACA 58.549 45.455 0.00 0.00 41.04 2.90
398 416 4.894114 TCTACCTCTTCTAAGGGCATGTAC 59.106 45.833 0.00 0.00 41.04 2.90
399 417 5.138758 TCTACCTCTTCTAAGGGCATGTA 57.861 43.478 0.00 0.00 41.04 2.29
400 418 3.995636 TCTACCTCTTCTAAGGGCATGT 58.004 45.455 0.00 0.00 41.04 3.21
401 419 5.359194 TTTCTACCTCTTCTAAGGGCATG 57.641 43.478 0.00 0.00 41.04 4.06
402 420 4.141597 GCTTTCTACCTCTTCTAAGGGCAT 60.142 45.833 0.00 0.00 41.04 4.40
403 421 3.197983 GCTTTCTACCTCTTCTAAGGGCA 59.802 47.826 0.00 0.00 41.04 5.36
404 422 3.432467 GGCTTTCTACCTCTTCTAAGGGC 60.432 52.174 0.00 0.00 41.04 5.19
405 423 4.034410 AGGCTTTCTACCTCTTCTAAGGG 58.966 47.826 0.00 0.00 41.04 3.95
406 424 4.712337 TCAGGCTTTCTACCTCTTCTAAGG 59.288 45.833 0.00 0.00 42.55 2.69
407 425 5.654650 TCTCAGGCTTTCTACCTCTTCTAAG 59.345 44.000 0.00 0.00 34.42 2.18
408 426 5.580998 TCTCAGGCTTTCTACCTCTTCTAA 58.419 41.667 0.00 0.00 34.42 2.10
409 427 5.194473 TCTCAGGCTTTCTACCTCTTCTA 57.806 43.478 0.00 0.00 34.42 2.10
410 428 4.054359 TCTCAGGCTTTCTACCTCTTCT 57.946 45.455 0.00 0.00 34.42 2.85
411 429 4.382577 CCTTCTCAGGCTTTCTACCTCTTC 60.383 50.000 0.00 0.00 34.42 2.87
412 430 3.517500 CCTTCTCAGGCTTTCTACCTCTT 59.482 47.826 0.00 0.00 34.42 2.85
413 431 3.103742 CCTTCTCAGGCTTTCTACCTCT 58.896 50.000 0.00 0.00 34.42 3.69
414 432 3.100671 TCCTTCTCAGGCTTTCTACCTC 58.899 50.000 0.00 0.00 40.58 3.85
415 433 3.191888 TCCTTCTCAGGCTTTCTACCT 57.808 47.619 0.00 0.00 40.58 3.08
416 434 3.515901 TCTTCCTTCTCAGGCTTTCTACC 59.484 47.826 0.00 0.00 40.58 3.18
417 435 4.810191 TCTTCCTTCTCAGGCTTTCTAC 57.190 45.455 0.00 0.00 40.58 2.59
418 436 5.544176 TCTTTCTTCCTTCTCAGGCTTTCTA 59.456 40.000 0.00 0.00 40.58 2.10
427 445 3.895656 TCGTCCTTCTTTCTTCCTTCTCA 59.104 43.478 0.00 0.00 0.00 3.27
457 475 5.509840 CCACTAGATTAAGAGATCCAACGGG 60.510 48.000 0.00 0.00 0.00 5.28
498 516 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
499 517 6.639632 ATCTTATCAACCATTGTACATGCC 57.360 37.500 0.00 0.00 0.00 4.40
500 518 8.383318 ACTATCTTATCAACCATTGTACATGC 57.617 34.615 0.00 0.00 0.00 4.06
501 519 9.770097 AGACTATCTTATCAACCATTGTACATG 57.230 33.333 0.00 0.00 0.00 3.21
569 587 9.571810 GCTAAGAGATGACTCATTATAGACATG 57.428 37.037 0.00 0.00 44.79 3.21
570 588 8.748412 GGCTAAGAGATGACTCATTATAGACAT 58.252 37.037 0.00 0.00 44.79 3.06
571 589 7.947332 AGGCTAAGAGATGACTCATTATAGACA 59.053 37.037 0.00 0.00 44.79 3.41
572 590 8.348285 AGGCTAAGAGATGACTCATTATAGAC 57.652 38.462 0.00 0.00 44.79 2.59
573 591 8.948401 AAGGCTAAGAGATGACTCATTATAGA 57.052 34.615 0.00 0.00 44.79 1.98
576 594 9.545928 AGATAAGGCTAAGAGATGACTCATTAT 57.454 33.333 0.00 0.00 44.79 1.28
577 595 8.948401 AGATAAGGCTAAGAGATGACTCATTA 57.052 34.615 0.00 0.00 44.79 1.90
578 596 7.854166 AGATAAGGCTAAGAGATGACTCATT 57.146 36.000 0.00 0.00 44.79 2.57
579 597 7.508636 TGAAGATAAGGCTAAGAGATGACTCAT 59.491 37.037 0.00 0.00 44.79 2.90
580 598 6.836007 TGAAGATAAGGCTAAGAGATGACTCA 59.164 38.462 0.00 0.00 44.79 3.41
581 599 7.283625 TGAAGATAAGGCTAAGAGATGACTC 57.716 40.000 0.00 0.00 42.90 3.36
582 600 7.667575 TTGAAGATAAGGCTAAGAGATGACT 57.332 36.000 0.00 0.00 0.00 3.41
583 601 9.988815 TTATTGAAGATAAGGCTAAGAGATGAC 57.011 33.333 0.00 0.00 0.00 3.06
630 648 8.897752 GGCTTGTCTTATCTTATTTGTCTCAAT 58.102 33.333 0.00 0.00 0.00 2.57
631 649 8.103305 AGGCTTGTCTTATCTTATTTGTCTCAA 58.897 33.333 0.00 0.00 0.00 3.02
632 650 7.624549 AGGCTTGTCTTATCTTATTTGTCTCA 58.375 34.615 0.00 0.00 0.00 3.27
633 651 8.499403 AAGGCTTGTCTTATCTTATTTGTCTC 57.501 34.615 0.00 0.00 0.00 3.36
634 652 8.325046 AGAAGGCTTGTCTTATCTTATTTGTCT 58.675 33.333 3.46 0.00 0.00 3.41
635 653 8.499403 AGAAGGCTTGTCTTATCTTATTTGTC 57.501 34.615 3.46 0.00 0.00 3.18
636 654 8.870075 AAGAAGGCTTGTCTTATCTTATTTGT 57.130 30.769 3.46 0.00 33.53 2.83
642 660 9.692325 ATCATAAAAGAAGGCTTGTCTTATCTT 57.308 29.630 3.46 0.00 34.19 2.40
643 661 9.692325 AATCATAAAAGAAGGCTTGTCTTATCT 57.308 29.630 3.46 0.00 34.19 1.98
646 664 9.520515 AGAAATCATAAAAGAAGGCTTGTCTTA 57.479 29.630 3.46 0.00 34.19 2.10
647 665 8.414629 AGAAATCATAAAAGAAGGCTTGTCTT 57.585 30.769 3.46 0.00 36.90 3.01
648 666 7.887495 AGAGAAATCATAAAAGAAGGCTTGTCT 59.113 33.333 3.46 0.00 33.79 3.41
649 667 8.049655 AGAGAAATCATAAAAGAAGGCTTGTC 57.950 34.615 3.46 0.00 33.79 3.18
650 668 7.887495 AGAGAGAAATCATAAAAGAAGGCTTGT 59.113 33.333 3.46 0.00 33.79 3.16
651 669 8.278729 AGAGAGAAATCATAAAAGAAGGCTTG 57.721 34.615 3.46 0.00 33.79 4.01
652 670 7.555914 GGAGAGAGAAATCATAAAAGAAGGCTT 59.444 37.037 0.00 0.00 35.37 4.35
653 671 7.053498 GGAGAGAGAAATCATAAAAGAAGGCT 58.947 38.462 0.00 0.00 0.00 4.58
654 672 7.053498 AGGAGAGAGAAATCATAAAAGAAGGC 58.947 38.462 0.00 0.00 0.00 4.35
655 673 8.485392 AGAGGAGAGAGAAATCATAAAAGAAGG 58.515 37.037 0.00 0.00 0.00 3.46
658 676 8.919145 GGTAGAGGAGAGAGAAATCATAAAAGA 58.081 37.037 0.00 0.00 0.00 2.52
659 677 8.923270 AGGTAGAGGAGAGAGAAATCATAAAAG 58.077 37.037 0.00 0.00 0.00 2.27
660 678 8.846423 AGGTAGAGGAGAGAGAAATCATAAAA 57.154 34.615 0.00 0.00 0.00 1.52
661 679 8.061920 TGAGGTAGAGGAGAGAGAAATCATAAA 58.938 37.037 0.00 0.00 0.00 1.40
662 680 7.587258 TGAGGTAGAGGAGAGAGAAATCATAA 58.413 38.462 0.00 0.00 0.00 1.90
663 681 7.155442 TGAGGTAGAGGAGAGAGAAATCATA 57.845 40.000 0.00 0.00 0.00 2.15
664 682 6.024563 TGAGGTAGAGGAGAGAGAAATCAT 57.975 41.667 0.00 0.00 0.00 2.45
665 683 5.458451 TGAGGTAGAGGAGAGAGAAATCA 57.542 43.478 0.00 0.00 0.00 2.57
666 684 6.068010 TGATGAGGTAGAGGAGAGAGAAATC 58.932 44.000 0.00 0.00 0.00 2.17
667 685 6.024563 TGATGAGGTAGAGGAGAGAGAAAT 57.975 41.667 0.00 0.00 0.00 2.17
668 686 5.458451 TGATGAGGTAGAGGAGAGAGAAA 57.542 43.478 0.00 0.00 0.00 2.52
669 687 5.661503 ATGATGAGGTAGAGGAGAGAGAA 57.338 43.478 0.00 0.00 0.00 2.87
670 688 5.661503 AATGATGAGGTAGAGGAGAGAGA 57.338 43.478 0.00 0.00 0.00 3.10
671 689 7.122650 GGATAAATGATGAGGTAGAGGAGAGAG 59.877 44.444 0.00 0.00 0.00 3.20
672 690 6.951198 GGATAAATGATGAGGTAGAGGAGAGA 59.049 42.308 0.00 0.00 0.00 3.10
673 691 6.953520 AGGATAAATGATGAGGTAGAGGAGAG 59.046 42.308 0.00 0.00 0.00 3.20
674 692 6.868826 AGGATAAATGATGAGGTAGAGGAGA 58.131 40.000 0.00 0.00 0.00 3.71
675 693 7.148154 CGTAGGATAAATGATGAGGTAGAGGAG 60.148 44.444 0.00 0.00 0.00 3.69
676 694 6.659668 CGTAGGATAAATGATGAGGTAGAGGA 59.340 42.308 0.00 0.00 0.00 3.71
677 695 6.434652 ACGTAGGATAAATGATGAGGTAGAGG 59.565 42.308 0.00 0.00 0.00 3.69
678 696 7.309177 CACGTAGGATAAATGATGAGGTAGAG 58.691 42.308 0.00 0.00 0.00 2.43
679 697 6.208797 CCACGTAGGATAAATGATGAGGTAGA 59.791 42.308 0.00 0.00 41.22 2.59
680 698 6.390721 CCACGTAGGATAAATGATGAGGTAG 58.609 44.000 0.00 0.00 41.22 3.18
681 699 5.279306 GCCACGTAGGATAAATGATGAGGTA 60.279 44.000 8.04 0.00 41.22 3.08
682 700 4.503296 GCCACGTAGGATAAATGATGAGGT 60.503 45.833 8.04 0.00 41.22 3.85
683 701 3.997021 GCCACGTAGGATAAATGATGAGG 59.003 47.826 8.04 0.00 41.22 3.86
684 702 4.449068 GTGCCACGTAGGATAAATGATGAG 59.551 45.833 8.04 0.00 41.22 2.90
685 703 4.100963 AGTGCCACGTAGGATAAATGATGA 59.899 41.667 8.04 0.00 41.22 2.92
686 704 4.212004 CAGTGCCACGTAGGATAAATGATG 59.788 45.833 8.04 0.00 41.22 3.07
687 705 4.141711 ACAGTGCCACGTAGGATAAATGAT 60.142 41.667 8.04 0.00 41.22 2.45
688 706 3.196901 ACAGTGCCACGTAGGATAAATGA 59.803 43.478 8.04 0.00 41.22 2.57
689 707 3.531538 ACAGTGCCACGTAGGATAAATG 58.468 45.455 8.04 5.04 41.22 2.32
690 708 3.906720 ACAGTGCCACGTAGGATAAAT 57.093 42.857 8.04 0.00 41.22 1.40
691 709 3.688694 AACAGTGCCACGTAGGATAAA 57.311 42.857 8.04 0.00 41.22 1.40
692 710 4.463539 TCTTAACAGTGCCACGTAGGATAA 59.536 41.667 8.04 0.00 41.22 1.75
693 711 4.018490 TCTTAACAGTGCCACGTAGGATA 58.982 43.478 8.04 0.00 41.22 2.59
694 712 2.829720 TCTTAACAGTGCCACGTAGGAT 59.170 45.455 8.04 0.00 41.22 3.24
695 713 2.241160 TCTTAACAGTGCCACGTAGGA 58.759 47.619 8.04 0.00 41.22 2.94
696 714 2.736144 TCTTAACAGTGCCACGTAGG 57.264 50.000 0.00 0.00 41.84 3.18
697 715 5.244785 TCTATCTTAACAGTGCCACGTAG 57.755 43.478 0.00 0.00 0.00 3.51
698 716 5.404946 GTTCTATCTTAACAGTGCCACGTA 58.595 41.667 0.00 0.00 0.00 3.57
699 717 4.243270 GTTCTATCTTAACAGTGCCACGT 58.757 43.478 0.00 0.00 0.00 4.49
700 718 3.617263 GGTTCTATCTTAACAGTGCCACG 59.383 47.826 0.00 0.00 0.00 4.94
701 719 4.575885 TGGTTCTATCTTAACAGTGCCAC 58.424 43.478 0.00 0.00 0.00 5.01
702 720 4.901197 TGGTTCTATCTTAACAGTGCCA 57.099 40.909 0.00 0.00 0.00 4.92
703 721 5.648092 ACAATGGTTCTATCTTAACAGTGCC 59.352 40.000 0.00 0.00 0.00 5.01
704 722 6.743575 ACAATGGTTCTATCTTAACAGTGC 57.256 37.500 0.00 0.00 0.00 4.40
705 723 8.771920 TGTACAATGGTTCTATCTTAACAGTG 57.228 34.615 0.00 0.00 0.00 3.66
706 724 9.383519 CATGTACAATGGTTCTATCTTAACAGT 57.616 33.333 0.00 0.00 0.00 3.55
707 725 8.338259 GCATGTACAATGGTTCTATCTTAACAG 58.662 37.037 0.00 0.00 0.00 3.16
708 726 7.282224 GGCATGTACAATGGTTCTATCTTAACA 59.718 37.037 0.00 0.00 0.00 2.41
709 727 7.255139 GGGCATGTACAATGGTTCTATCTTAAC 60.255 40.741 0.00 0.00 0.00 2.01
710 728 6.770785 GGGCATGTACAATGGTTCTATCTTAA 59.229 38.462 0.00 0.00 0.00 1.85
711 729 6.101150 AGGGCATGTACAATGGTTCTATCTTA 59.899 38.462 0.00 0.00 0.00 2.10
712 730 5.103940 AGGGCATGTACAATGGTTCTATCTT 60.104 40.000 0.00 0.00 0.00 2.40
713 731 4.413520 AGGGCATGTACAATGGTTCTATCT 59.586 41.667 0.00 0.00 0.00 1.98
714 732 4.718961 AGGGCATGTACAATGGTTCTATC 58.281 43.478 0.00 0.00 0.00 2.08
715 733 4.796110 AGGGCATGTACAATGGTTCTAT 57.204 40.909 0.00 0.00 0.00 1.98
716 734 4.584638 AAGGGCATGTACAATGGTTCTA 57.415 40.909 0.00 0.00 0.00 2.10
717 735 3.456380 AAGGGCATGTACAATGGTTCT 57.544 42.857 0.00 0.00 0.00 3.01
718 736 5.825679 TGTATAAGGGCATGTACAATGGTTC 59.174 40.000 0.00 0.00 0.00 3.62
719 737 5.761205 TGTATAAGGGCATGTACAATGGTT 58.239 37.500 0.00 0.00 0.00 3.67
720 738 5.381184 TGTATAAGGGCATGTACAATGGT 57.619 39.130 0.00 0.00 0.00 3.55
721 739 6.707440 TTTGTATAAGGGCATGTACAATGG 57.293 37.500 0.00 0.00 37.03 3.16
756 774 7.942341 TGGGAAGTGACATTTATGTAAGTCTTT 59.058 33.333 0.00 0.00 41.95 2.52
781 800 8.167985 CGGAAGTGGTTGCAAAAATATTTTATG 58.832 33.333 13.68 13.85 0.00 1.90
785 804 5.848406 TCGGAAGTGGTTGCAAAAATATTT 58.152 33.333 0.00 0.00 0.00 1.40
786 805 5.461032 TCGGAAGTGGTTGCAAAAATATT 57.539 34.783 0.00 0.00 0.00 1.28
787 806 5.659440 ATCGGAAGTGGTTGCAAAAATAT 57.341 34.783 0.00 0.00 0.00 1.28
788 807 6.576662 TTATCGGAAGTGGTTGCAAAAATA 57.423 33.333 0.00 0.00 0.00 1.40
789 808 5.461032 TTATCGGAAGTGGTTGCAAAAAT 57.539 34.783 0.00 0.00 0.00 1.82
792 811 5.461032 AATTTATCGGAAGTGGTTGCAAA 57.539 34.783 0.00 0.00 0.00 3.68
795 814 5.945155 TGTAAATTTATCGGAAGTGGTTGC 58.055 37.500 0.31 0.00 0.00 4.17
796 815 6.972328 CCATGTAAATTTATCGGAAGTGGTTG 59.028 38.462 0.31 0.00 0.00 3.77
797 816 6.405397 GCCATGTAAATTTATCGGAAGTGGTT 60.405 38.462 12.31 0.00 0.00 3.67
798 817 5.067283 GCCATGTAAATTTATCGGAAGTGGT 59.933 40.000 12.31 0.00 0.00 4.16
799 818 5.299279 AGCCATGTAAATTTATCGGAAGTGG 59.701 40.000 12.31 9.05 0.00 4.00
824 845 0.899019 AACCAACGGTTTTGCTTGGT 59.101 45.000 0.00 0.00 44.33 3.67
874 897 2.917227 GGTGCCTGGTTTGGTGGG 60.917 66.667 0.00 0.00 0.00 4.61
897 920 5.046014 AGAGATGGCTATATTAGGGCACAAG 60.046 44.000 0.00 0.00 40.63 3.16
905 928 7.555087 CCTGGAAGAAGAGATGGCTATATTAG 58.445 42.308 0.00 0.00 34.07 1.73
927 950 3.775654 GACCCGGTCTCCTGCCTG 61.776 72.222 10.59 0.00 0.00 4.85
1073 1285 1.688772 CATGGCTGGGATCCTTCAAG 58.311 55.000 12.58 5.87 0.00 3.02
1243 1458 2.028190 CTGAGATACCGCCCGCTG 59.972 66.667 0.00 0.00 0.00 5.18
2216 3534 0.965866 TCGGCAGTGGAGACGAAGAT 60.966 55.000 0.00 0.00 31.79 2.40
2251 3569 2.048597 TTAGCGGTGGTGAGCACG 60.049 61.111 8.82 5.56 35.48 5.34
2266 3584 3.309296 GAGGATGGAGAGGATGGTGTTA 58.691 50.000 0.00 0.00 0.00 2.41
2801 4188 2.068519 TGCATGCGTGAGAACAACTAG 58.931 47.619 14.09 0.00 0.00 2.57
2803 4190 1.466167 GATGCATGCGTGAGAACAACT 59.534 47.619 19.18 0.00 0.00 3.16
2804 4191 1.197492 TGATGCATGCGTGAGAACAAC 59.803 47.619 19.18 0.13 0.00 3.32
2806 4193 1.521580 TTGATGCATGCGTGAGAACA 58.478 45.000 19.18 5.57 0.00 3.18
2809 4196 1.521580 TGTTTGATGCATGCGTGAGA 58.478 45.000 19.18 0.07 0.00 3.27
2898 4294 1.064946 GATCAGCTGGTCCTCGTCG 59.935 63.158 16.62 0.00 0.00 5.12
2982 4378 1.798813 GCCTTCTTGTTGTGGTCGTAG 59.201 52.381 0.00 0.00 0.00 3.51
3155 4551 1.617018 CCTCTGCGGGAACTGGATGA 61.617 60.000 0.00 0.00 32.01 2.92
3393 4789 3.655810 GAGCTGCTGGGTGTCCGAG 62.656 68.421 7.01 0.00 35.24 4.63
3405 4801 4.087892 TCCTCCGCCTTGAGCTGC 62.088 66.667 0.00 0.00 40.39 5.25
3618 5014 1.142748 CCAGCAGGAGATGACGGAC 59.857 63.158 0.00 0.00 36.89 4.79
3818 5214 9.567848 TTATTAATGATTCGAACAAAAAGGAGC 57.432 29.630 0.00 0.00 0.00 4.70
3853 5249 9.635520 CCCTTTTCGTTTCTATGATATATACGT 57.364 33.333 0.00 0.00 0.00 3.57
3854 5250 9.635520 ACCCTTTTCGTTTCTATGATATATACG 57.364 33.333 0.00 0.00 0.00 3.06
3860 5256 8.044309 TGATCAACCCTTTTCGTTTCTATGATA 58.956 33.333 0.00 0.00 0.00 2.15
3861 5257 6.884295 TGATCAACCCTTTTCGTTTCTATGAT 59.116 34.615 0.00 0.00 0.00 2.45
3862 5258 6.234920 TGATCAACCCTTTTCGTTTCTATGA 58.765 36.000 0.00 0.00 0.00 2.15
3863 5259 6.494893 TGATCAACCCTTTTCGTTTCTATG 57.505 37.500 0.00 0.00 0.00 2.23
3864 5260 7.703058 AATGATCAACCCTTTTCGTTTCTAT 57.297 32.000 0.00 0.00 0.00 1.98
3865 5261 7.519032 AAATGATCAACCCTTTTCGTTTCTA 57.481 32.000 0.00 0.00 0.00 2.10
3866 5262 6.405278 AAATGATCAACCCTTTTCGTTTCT 57.595 33.333 0.00 0.00 0.00 2.52
3867 5263 7.114388 GTGTAAATGATCAACCCTTTTCGTTTC 59.886 37.037 0.00 0.00 31.64 2.78
3868 5264 6.921307 GTGTAAATGATCAACCCTTTTCGTTT 59.079 34.615 0.00 0.00 33.29 3.60
3869 5265 6.039941 TGTGTAAATGATCAACCCTTTTCGTT 59.960 34.615 0.00 0.00 0.00 3.85
3870 5266 5.533154 TGTGTAAATGATCAACCCTTTTCGT 59.467 36.000 0.00 0.00 0.00 3.85
3871 5267 6.007936 TGTGTAAATGATCAACCCTTTTCG 57.992 37.500 0.00 0.00 0.00 3.46
3872 5268 7.329226 CACATGTGTAAATGATCAACCCTTTTC 59.671 37.037 18.03 0.00 0.00 2.29
3877 5273 5.643379 ACACATGTGTAAATGATCAACCC 57.357 39.130 29.66 0.00 42.90 4.11
3878 5274 7.027161 GGTAACACATGTGTAAATGATCAACC 58.973 38.462 30.75 20.02 44.13 3.77
3887 5283 4.069300 TCACCGGTAACACATGTGTAAA 57.931 40.909 30.75 19.29 44.13 2.01
3888 5284 3.747854 TCACCGGTAACACATGTGTAA 57.252 42.857 30.75 7.39 44.13 2.41
3891 5287 3.070748 TCATTCACCGGTAACACATGTG 58.929 45.455 24.25 24.25 0.00 3.21
3894 5290 2.706890 GGTCATTCACCGGTAACACAT 58.293 47.619 6.87 0.00 34.56 3.21
3914 5310 2.216046 CACCTGATGGATGGTTCGATG 58.784 52.381 0.00 0.00 33.75 3.84
3926 5322 1.580942 CCCAACGCAACACCTGATG 59.419 57.895 0.00 0.00 0.00 3.07
3949 5345 1.038130 AGAAGATCTCCACGGACCCG 61.038 60.000 6.94 6.94 46.03 5.28
3994 5390 1.696832 GGAACATGAGCTTCCGCGAC 61.697 60.000 8.23 0.00 42.32 5.19
4042 5438 1.946984 TGGAGGTGAACGGGTAGATT 58.053 50.000 0.00 0.00 0.00 2.40
4169 5565 2.419198 GAGCGCGATGAGGGTGAT 59.581 61.111 12.10 0.00 34.93 3.06
4216 5612 1.213013 CCACCAGTCCTCGAGTTCG 59.787 63.158 12.31 0.00 41.45 3.95
4281 5677 3.635373 CCTAGCTAGGTTGTCCGTATCAA 59.365 47.826 28.90 0.00 38.69 2.57
4288 5684 1.121378 GGACCCTAGCTAGGTTGTCC 58.879 60.000 34.25 34.25 43.10 4.02
4292 5688 0.561680 ATCGGGACCCTAGCTAGGTT 59.438 55.000 33.00 23.58 42.03 3.50
4304 5700 2.100418 GTGGTCAGGTTAGTATCGGGAC 59.900 54.545 0.00 0.00 0.00 4.46
4315 5711 1.072331 GAGACATGTGGTGGTCAGGTT 59.928 52.381 1.15 0.00 36.50 3.50
4457 5853 2.572243 GCGTAGATATCCTCGTTGTCG 58.428 52.381 15.20 4.82 38.55 4.35
4469 5865 3.249091 GACGTAGAGATCCGCGTAGATA 58.751 50.000 4.92 0.00 37.71 1.98
4481 5877 1.802960 GACCACTTGACGACGTAGAGA 59.197 52.381 14.78 0.00 0.00 3.10
4580 5976 2.637025 CACCGTGGGTTTTCGCTG 59.363 61.111 0.00 0.00 31.02 5.18
4839 6235 1.351017 ACACATACACCAGGGAAGTGG 59.649 52.381 0.00 0.00 44.01 4.00
4840 6236 2.813754 CAACACATACACCAGGGAAGTG 59.186 50.000 0.00 0.00 41.15 3.16
4961 6357 9.664332 ACTTAAGTCTACGAGAGAACAAGTATA 57.336 33.333 1.12 0.00 35.37 1.47
5048 6444 5.048713 CGACCAATTTCAGCTTTAGAAAGGT 60.049 40.000 8.03 8.03 46.71 3.50
5105 6501 5.530712 GGTAACGCCCAGTTCAAAATAAAA 58.469 37.500 0.00 0.00 43.06 1.52
5107 6503 4.769859 GGTAACGCCCAGTTCAAAATAA 57.230 40.909 0.00 0.00 43.06 1.40
5181 6698 2.120312 CCTTACCTCTTTCCCTCTCCC 58.880 57.143 0.00 0.00 0.00 4.30
5350 8092 7.833183 AGTAGCTTTCCTCTTTTGATTGATGAT 59.167 33.333 0.00 0.00 0.00 2.45
5351 8093 7.170965 AGTAGCTTTCCTCTTTTGATTGATGA 58.829 34.615 0.00 0.00 0.00 2.92
5467 10231 3.391382 GCGGGACTACTGCCCAGT 61.391 66.667 6.17 6.17 46.36 4.00
5721 11104 7.780008 TTCTAACGTTCACCACATATTATGG 57.220 36.000 2.82 1.76 43.43 2.74
5726 11109 8.889717 CCTAAAATTCTAACGTTCACCACATAT 58.110 33.333 2.82 0.00 0.00 1.78
5727 11110 7.334921 CCCTAAAATTCTAACGTTCACCACATA 59.665 37.037 2.82 0.00 0.00 2.29
5728 11111 6.150474 CCCTAAAATTCTAACGTTCACCACAT 59.850 38.462 2.82 0.00 0.00 3.21
5729 11112 5.470777 CCCTAAAATTCTAACGTTCACCACA 59.529 40.000 2.82 0.00 0.00 4.17
5730 11113 5.702209 TCCCTAAAATTCTAACGTTCACCAC 59.298 40.000 2.82 0.00 0.00 4.16
5731 11114 5.867330 TCCCTAAAATTCTAACGTTCACCA 58.133 37.500 2.82 0.00 0.00 4.17
5847 14957 7.707104 ACTTCGTGAAATTTGATCAACTTTCT 58.293 30.769 33.27 19.78 39.33 2.52
5848 14958 7.914537 ACTTCGTGAAATTTGATCAACTTTC 57.085 32.000 30.08 30.08 39.16 2.62
5924 15036 2.139917 CTTGCACAACCTGTTACGCTA 58.860 47.619 0.00 0.00 0.00 4.26
5938 15050 1.067516 ACATTGCAGTTGGACTTGCAC 59.932 47.619 0.00 0.00 34.01 4.57
5939 15051 1.401761 ACATTGCAGTTGGACTTGCA 58.598 45.000 4.06 0.00 33.01 4.08
5940 15052 2.129607 CAACATTGCAGTTGGACTTGC 58.870 47.619 10.24 0.00 43.89 4.01
5941 15053 3.713858 TCAACATTGCAGTTGGACTTG 57.286 42.857 16.26 6.60 46.74 3.16
5942 15054 3.953612 TCTTCAACATTGCAGTTGGACTT 59.046 39.130 16.26 0.00 46.74 3.01
5943 15055 3.554934 TCTTCAACATTGCAGTTGGACT 58.445 40.909 16.26 0.00 46.74 3.85
5944 15056 3.988379 TCTTCAACATTGCAGTTGGAC 57.012 42.857 16.26 0.00 46.74 4.02
5945 15057 3.243035 CGTTCTTCAACATTGCAGTTGGA 60.243 43.478 16.26 8.87 46.74 3.53
5986 15100 1.680735 TGCGATGAAGTGTTTTGCCTT 59.319 42.857 0.00 0.00 0.00 4.35
5992 15106 3.189287 GGTCTTGATGCGATGAAGTGTTT 59.811 43.478 0.00 0.00 0.00 2.83
6046 15160 2.029964 GGTTCACCGTCGGCAAGA 59.970 61.111 12.28 4.23 0.00 3.02
6071 15185 1.153706 CGGGCATAACCTCGTCGTT 60.154 57.895 0.00 0.00 39.10 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.