Multiple sequence alignment - TraesCS2A01G121600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G121600 chr2A 100.000 5076 0 0 1 5076 71316846 71311771 0.000000e+00 9374.0
1 TraesCS2A01G121600 chr2A 96.343 3281 91 10 1542 4812 71213731 71210470 0.000000e+00 5367.0
2 TraesCS2A01G121600 chr2A 95.245 3281 106 21 1542 4812 71160950 71157710 0.000000e+00 5149.0
3 TraesCS2A01G121600 chr2A 94.067 1618 75 6 2881 4496 71115899 71114301 0.000000e+00 2436.0
4 TraesCS2A01G121600 chr2A 94.748 1466 67 8 67 1526 71215252 71213791 0.000000e+00 2272.0
5 TraesCS2A01G121600 chr2A 93.913 1495 73 6 67 1546 71162470 71160979 0.000000e+00 2241.0
6 TraesCS2A01G121600 chr2A 96.389 637 15 1 4184 4812 71263735 71263099 0.000000e+00 1042.0
7 TraesCS2A01G121600 chr2A 96.310 271 10 0 4806 5076 71157304 71157034 3.610000e-121 446.0
8 TraesCS2A01G121600 chr2A 91.144 271 7 1 4806 5076 71210062 71209809 8.090000e-93 351.0
9 TraesCS2A01G121600 chr2A 91.144 271 7 1 4806 5076 71262692 71262439 8.090000e-93 351.0
10 TraesCS2A01G121600 chr2A 100.000 43 0 0 32 74 71215460 71215418 4.210000e-11 80.5
11 TraesCS2A01G121600 chr2A 97.561 41 1 0 1 41 71215474 71215434 2.540000e-08 71.3
12 TraesCS2A01G121600 chr2A 95.349 43 2 0 32 74 71121376 71121334 9.120000e-08 69.4
13 TraesCS2A01G121600 chr2A 97.561 41 0 1 1 41 71162691 71162652 9.120000e-08 69.4
14 TraesCS2A01G121600 chrUn 96.321 3262 91 10 1542 4793 289662097 289658855 0.000000e+00 5332.0
15 TraesCS2A01G121600 chrUn 94.831 2283 108 8 1542 3818 235542451 235544729 0.000000e+00 3554.0
16 TraesCS2A01G121600 chrUn 94.831 2283 108 8 1542 3818 256965588 256963310 0.000000e+00 3554.0
17 TraesCS2A01G121600 chrUn 94.831 2283 108 8 1542 3818 271156633 271154355 0.000000e+00 3554.0
18 TraesCS2A01G121600 chrUn 85.641 2535 302 43 1537 4064 261753666 261756145 0.000000e+00 2608.0
19 TraesCS2A01G121600 chrUn 94.748 1466 67 8 67 1526 289663618 289662157 0.000000e+00 2272.0
20 TraesCS2A01G121600 chrUn 89.065 1518 110 25 67 1546 235540923 235542422 0.000000e+00 1832.0
21 TraesCS2A01G121600 chrUn 89.065 1518 110 25 67 1546 256967116 256965617 0.000000e+00 1832.0
22 TraesCS2A01G121600 chrUn 89.065 1518 110 25 67 1546 271158161 271156662 0.000000e+00 1832.0
23 TraesCS2A01G121600 chrUn 100.000 43 0 0 32 74 235540714 235540756 4.210000e-11 80.5
24 TraesCS2A01G121600 chrUn 97.561 41 0 1 1 41 289663839 289663800 9.120000e-08 69.4
25 TraesCS2A01G121600 chrUn 95.122 41 2 0 1 41 235540700 235540740 1.180000e-06 65.8
26 TraesCS2A01G121600 chr2D 94.290 2977 133 11 1542 4496 72656102 72653141 0.000000e+00 4521.0
27 TraesCS2A01G121600 chr2D 94.737 2888 129 7 1542 4423 72375604 72372734 0.000000e+00 4470.0
28 TraesCS2A01G121600 chr2D 89.338 272 27 2 4503 4773 72439013 72438743 1.750000e-89 340.0
29 TraesCS2A01G121600 chr2D 88.686 274 29 2 4503 4775 72698897 72698625 2.930000e-87 333.0
30 TraesCS2A01G121600 chr2B 95.226 1529 67 5 1542 3065 109183583 109182056 0.000000e+00 2414.0
31 TraesCS2A01G121600 chr2B 94.761 1546 74 5 1542 3083 109092571 109091029 0.000000e+00 2399.0
32 TraesCS2A01G121600 chr2B 94.699 1528 75 5 1542 3065 109871973 109870448 0.000000e+00 2368.0
33 TraesCS2A01G121600 chr2B 92.308 1599 105 10 2499 4092 109360136 109358551 0.000000e+00 2255.0
34 TraesCS2A01G121600 chr2B 93.271 1382 75 4 3118 4496 109870452 109869086 0.000000e+00 2021.0
35 TraesCS2A01G121600 chr2B 93.271 1382 74 9 3118 4496 109182060 109180695 0.000000e+00 2019.0
36 TraesCS2A01G121600 chr2B 90.389 1467 108 17 67 1519 109094088 109092641 0.000000e+00 1897.0
37 TraesCS2A01G121600 chr2B 89.932 1480 110 22 67 1527 109873491 109872032 0.000000e+00 1871.0
38 TraesCS2A01G121600 chr2B 94.209 1226 63 2 3272 4496 109085403 109084185 0.000000e+00 1864.0
39 TraesCS2A01G121600 chr2B 89.171 1496 106 28 67 1527 109185116 109183642 0.000000e+00 1814.0
40 TraesCS2A01G121600 chr2B 91.463 246 20 1 4769 5013 109974170 109973925 2.260000e-88 337.0
41 TraesCS2A01G121600 chr2B 87.179 273 33 2 4503 4775 109095201 109094931 4.940000e-80 309.0
42 TraesCS2A01G121600 chr2B 87.226 274 32 3 4503 4775 109193670 109193399 4.940000e-80 309.0
43 TraesCS2A01G121600 chr2B 87.179 273 33 2 4503 4775 109874604 109874334 4.940000e-80 309.0
44 TraesCS2A01G121600 chr2B 100.000 43 0 0 32 74 109094297 109094255 4.210000e-11 80.5
45 TraesCS2A01G121600 chr2B 97.674 43 1 0 32 74 109185325 109185283 1.960000e-09 75.0
46 TraesCS2A01G121600 chr2B 95.122 41 2 0 1 41 109094311 109094271 1.180000e-06 65.8
47 TraesCS2A01G121600 chr2B 95.122 41 1 1 1 41 109873713 109873674 4.240000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G121600 chr2A 71311771 71316846 5075 True 9374.000 9374 100.00000 1 5076 1 chr2A.!!$R3 5075
1 TraesCS2A01G121600 chr2A 71114301 71115899 1598 True 2436.000 2436 94.06700 2881 4496 1 chr2A.!!$R1 1615
2 TraesCS2A01G121600 chr2A 71157034 71162691 5657 True 1976.350 5149 95.75725 1 5076 4 chr2A.!!$R4 5075
3 TraesCS2A01G121600 chr2A 71209809 71215474 5665 True 1628.360 5367 95.95920 1 5076 5 chr2A.!!$R5 5075
4 TraesCS2A01G121600 chr2A 71262439 71263735 1296 True 696.500 1042 93.76650 4184 5076 2 chr2A.!!$R6 892
5 TraesCS2A01G121600 chrUn 256963310 256967116 3806 True 2693.000 3554 91.94800 67 3818 2 chrUn.!!$R1 3751
6 TraesCS2A01G121600 chrUn 271154355 271158161 3806 True 2693.000 3554 91.94800 67 3818 2 chrUn.!!$R2 3751
7 TraesCS2A01G121600 chrUn 261753666 261756145 2479 False 2608.000 2608 85.64100 1537 4064 1 chrUn.!!$F1 2527
8 TraesCS2A01G121600 chrUn 289658855 289663839 4984 True 2557.800 5332 96.21000 1 4793 3 chrUn.!!$R3 4792
9 TraesCS2A01G121600 chrUn 235540700 235544729 4029 False 1383.075 3554 94.75450 1 3818 4 chrUn.!!$F2 3817
10 TraesCS2A01G121600 chr2D 72653141 72656102 2961 True 4521.000 4521 94.29000 1542 4496 1 chr2D.!!$R3 2954
11 TraesCS2A01G121600 chr2D 72372734 72375604 2870 True 4470.000 4470 94.73700 1542 4423 1 chr2D.!!$R1 2881
12 TraesCS2A01G121600 chr2B 109358551 109360136 1585 True 2255.000 2255 92.30800 2499 4092 1 chr2B.!!$R3 1593
13 TraesCS2A01G121600 chr2B 109084185 109085403 1218 True 1864.000 1864 94.20900 3272 4496 1 chr2B.!!$R1 1224
14 TraesCS2A01G121600 chr2B 109180695 109185325 4630 True 1580.500 2414 93.83550 32 4496 4 chr2B.!!$R6 4464
15 TraesCS2A01G121600 chr2B 109869086 109874604 5518 True 1326.580 2368 92.04060 1 4775 5 chr2B.!!$R7 4774
16 TraesCS2A01G121600 chr2B 109091029 109095201 4172 True 950.260 2399 93.49020 1 4775 5 chr2B.!!$R5 4774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 1180 0.460635 GCAATTGCATGGGCGACAAT 60.461 50.000 25.36 0.0 45.35 2.71 F
1010 2082 0.036732 AGGCACCACATGACGTTCAT 59.963 50.000 0.00 0.0 43.63 2.57 F
1923 3076 1.151668 CAAGGTCTTGAAGCTGTCGG 58.848 55.000 4.82 0.0 42.93 4.79 F
2012 3165 0.112995 TGAAGGATTGCTTGGTGGCT 59.887 50.000 0.00 0.0 0.00 4.75 F
2030 3183 1.207791 CTGGCCCTAGGATTGTGTCT 58.792 55.000 11.48 0.0 0.00 3.41 F
2839 4017 2.174854 AACACCTGGTTAGAAAGGCACT 59.825 45.455 0.00 0.0 38.24 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1418 2518 0.034616 GCTCAGCCTTGTCAGTCAGT 59.965 55.000 0.00 0.0 0.00 3.41 R
2012 3165 0.911769 CAGACACAATCCTAGGGCCA 59.088 55.000 9.46 0.0 0.00 5.36 R
3827 5013 1.743772 GCAGTGGACATCCGTAAGCAT 60.744 52.381 0.00 0.0 39.43 3.79 R
3832 5018 2.100749 CAGTATGCAGTGGACATCCGTA 59.899 50.000 0.00 0.0 39.43 4.02 R
3993 5179 7.837689 TCAGGGAGTGTATAAGTGTATAAGTGT 59.162 37.037 0.00 0.0 0.00 3.55 R
4118 5312 0.109132 GCAATCAAGAAACCCAGCGG 60.109 55.000 0.00 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 1170 2.491152 CGGAAGCGGCAATTGCAT 59.509 55.556 30.32 13.88 44.36 3.96
115 1180 0.460635 GCAATTGCATGGGCGACAAT 60.461 50.000 25.36 0.00 45.35 2.71
129 1194 3.206150 GCGACAATGACATTGATAGGGT 58.794 45.455 30.23 10.35 42.83 4.34
138 1203 3.098377 ACATTGATAGGGTTGCATGCAA 58.902 40.909 28.80 28.80 0.00 4.08
214 1279 1.912763 GCTCCAAACCAATGCCCCA 60.913 57.895 0.00 0.00 0.00 4.96
215 1280 1.266867 GCTCCAAACCAATGCCCCAT 61.267 55.000 0.00 0.00 0.00 4.00
325 1393 0.539986 AAGTCGCCATATTGGTCGGT 59.460 50.000 9.38 0.00 40.46 4.69
346 1414 2.558795 TCGACTGCTATAGAATCTGGCC 59.441 50.000 3.21 0.00 0.00 5.36
486 1554 1.365699 TCTAACGAATTTGCTCCCGC 58.634 50.000 0.00 0.00 0.00 6.13
560 1629 5.408604 GTGTTGACCTAAGACGTGAAATGAT 59.591 40.000 0.00 0.00 0.00 2.45
629 1698 1.006102 GGCACACTACTCACTGCGT 60.006 57.895 0.00 0.00 0.00 5.24
668 1737 2.920912 ACGGCCGAGGTCTTCCAA 60.921 61.111 35.90 0.00 35.89 3.53
710 1779 7.434307 GTCGAAAATGCATCATGAAATTGATCT 59.566 33.333 0.00 0.00 34.09 2.75
713 1782 9.261180 GAAAATGCATCATGAAATTGATCTGAT 57.739 29.630 0.00 0.00 34.09 2.90
744 1816 3.445805 GTGCCTAAGCTCTAAGAGAGTGT 59.554 47.826 7.47 0.00 44.12 3.55
911 1983 4.776322 CCAGACATCGCGCCCCAA 62.776 66.667 0.00 0.00 0.00 4.12
940 2012 4.988486 GCAACCGGTCGTCGTCGT 62.988 66.667 8.04 0.00 38.33 4.34
1010 2082 0.036732 AGGCACCACATGACGTTCAT 59.963 50.000 0.00 0.00 43.63 2.57
1191 2271 1.943693 CCGCAGTTTGTTTGTGCCG 60.944 57.895 0.00 0.00 33.42 5.69
1214 2294 4.364860 GTTTCCTTAACAAACGGCAATGT 58.635 39.130 0.00 0.00 36.71 2.71
1234 2314 5.314718 TGTGCTCCATATCCTTTGATGAT 57.685 39.130 0.00 0.00 32.18 2.45
1275 2357 3.570926 TTGTACTACAAGTCAGGCTCG 57.429 47.619 0.00 0.00 32.34 5.03
1418 2518 6.825944 TGTTCCGTTCCATCATTCAAAATA 57.174 33.333 0.00 0.00 0.00 1.40
1571 2724 1.376037 CTTGAAGGCGTGGGAGGTC 60.376 63.158 0.00 0.00 0.00 3.85
1572 2725 2.111999 CTTGAAGGCGTGGGAGGTCA 62.112 60.000 0.00 0.00 0.00 4.02
1796 2949 4.129737 ACCGATGACGACGCCAGG 62.130 66.667 0.00 0.00 42.66 4.45
1923 3076 1.151668 CAAGGTCTTGAAGCTGTCGG 58.848 55.000 4.82 0.00 42.93 4.79
1989 3142 3.645884 TGCACGTCTTTGGAAGTACTAC 58.354 45.455 0.00 0.00 33.18 2.73
2012 3165 0.112995 TGAAGGATTGCTTGGTGGCT 59.887 50.000 0.00 0.00 0.00 4.75
2030 3183 1.207791 CTGGCCCTAGGATTGTGTCT 58.792 55.000 11.48 0.00 0.00 3.41
2393 3546 7.008021 ACATGGTTTTGCTGAAGGAATTTAT 57.992 32.000 0.00 0.00 0.00 1.40
2496 3649 3.263602 CAAATGATGCAGAGTATGGCG 57.736 47.619 0.00 0.00 0.00 5.69
2649 3802 3.505386 ACTGATGCTGGAGAGGTATAGG 58.495 50.000 0.00 0.00 0.00 2.57
2796 3974 7.243487 CCAACAGAATACACATGTACAATGAC 58.757 38.462 15.39 5.89 32.72 3.06
2839 4017 2.174854 AACACCTGGTTAGAAAGGCACT 59.825 45.455 0.00 0.00 38.24 4.40
2840 4018 2.976882 ACACCTGGTTAGAAAGGCACTA 59.023 45.455 0.00 0.00 38.49 2.74
3182 4362 7.716123 TCTTAATTTCTTTCTCGTGGTTGGTAA 59.284 33.333 0.00 0.00 0.00 2.85
3409 4591 4.871557 TGATGCATTAATTTTCTTGCTGCC 59.128 37.500 0.00 0.00 36.10 4.85
3488 4670 4.832823 ACATATTTGGGGCTTATGCTTACC 59.167 41.667 0.13 2.25 39.59 2.85
3566 4751 4.121317 CTGCAAAAGAACTTCAATGCCAA 58.879 39.130 13.27 1.57 33.01 4.52
3827 5013 4.322567 TGCTTGTATGTTCATGTGCTACA 58.677 39.130 0.00 0.00 0.00 2.74
3993 5179 9.340223 TCCTTCTATAGATGATCCTAGACTACA 57.660 37.037 15.43 0.00 0.00 2.74
3994 5180 9.391006 CCTTCTATAGATGATCCTAGACTACAC 57.609 40.741 15.43 0.00 0.00 2.90
3995 5181 9.952030 CTTCTATAGATGATCCTAGACTACACA 57.048 37.037 9.52 0.00 0.00 3.72
3996 5182 9.727859 TTCTATAGATGATCCTAGACTACACAC 57.272 37.037 2.58 0.00 0.00 3.82
3997 5183 9.106977 TCTATAGATGATCCTAGACTACACACT 57.893 37.037 0.00 0.00 0.00 3.55
3998 5184 9.733556 CTATAGATGATCCTAGACTACACACTT 57.266 37.037 0.00 0.00 0.00 3.16
4182 5376 5.062934 TGACGTTGGTGATTATTGAATCGTC 59.937 40.000 0.00 0.00 43.92 4.20
4209 5403 2.046023 TTGCCAGTGGGATGAGCG 60.046 61.111 12.15 0.00 35.59 5.03
4408 5602 5.106436 GGCAGCTTTACTACCGTACAAATTT 60.106 40.000 0.00 0.00 0.00 1.82
4509 5703 4.335400 TCGGTGCTCTGCAATCATATAA 57.665 40.909 0.00 0.00 41.47 0.98
4608 5810 9.996554 TTTCTCTCTGAATAACAAATACTGACA 57.003 29.630 0.00 0.00 34.24 3.58
4706 5908 6.825610 ACCCATTGTTTGTGTATTTGTGATT 58.174 32.000 0.00 0.00 0.00 2.57
4731 5933 7.461749 TGTATTTGCCCCATTTAAATTTTCCA 58.538 30.769 0.00 0.00 0.00 3.53
4793 5995 1.597742 CTGTTGGGTCCACTTGTCAG 58.402 55.000 0.00 0.00 0.00 3.51
4799 6001 3.189606 TGGGTCCACTTGTCAGGATAAT 58.810 45.455 0.00 0.00 36.11 1.28
4844 6460 1.546923 TCGGAAGCGTAAACCAGATGA 59.453 47.619 0.00 0.00 0.00 2.92
4877 6493 2.106683 CCCACCAAATCGGACTCGC 61.107 63.158 0.00 0.00 38.63 5.03
4896 6512 0.172578 CGTCCTCGTGTGCCTAATCA 59.827 55.000 0.00 0.00 0.00 2.57
4910 6526 1.478105 CTAATCAGCAAAACCTGGCCC 59.522 52.381 0.00 0.00 33.64 5.80
4958 6574 1.816224 GCCGCCCTTTGTTCATCTTTA 59.184 47.619 0.00 0.00 0.00 1.85
4961 6577 2.817258 CGCCCTTTGTTCATCTTTACCA 59.183 45.455 0.00 0.00 0.00 3.25
4987 6603 1.204704 CTTGTGGTCGCATAGAGTGGA 59.795 52.381 0.00 0.00 0.00 4.02
5038 6654 1.745653 GCTGGAGTGGTTTTATGGCTC 59.254 52.381 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 1170 2.127271 ATCAATGTCATTGTCGCCCA 57.873 45.000 22.01 5.33 41.02 5.36
115 1180 2.689471 GCATGCAACCCTATCAATGTCA 59.311 45.455 14.21 0.00 0.00 3.58
129 1194 2.430465 GACTCTTCCTCTTGCATGCAA 58.570 47.619 30.12 30.12 0.00 4.08
138 1203 0.251832 TTGCCTCGGACTCTTCCTCT 60.252 55.000 0.00 0.00 40.23 3.69
154 1219 0.241213 GAGCGGGAGGAAAGTTTTGC 59.759 55.000 0.00 0.00 0.00 3.68
214 1279 8.378115 TCCAATTCAACCCTTCAAATAATGAT 57.622 30.769 0.00 0.00 38.03 2.45
215 1280 7.579339 GCTCCAATTCAACCCTTCAAATAATGA 60.579 37.037 0.00 0.00 35.85 2.57
325 1393 2.558795 GGCCAGATTCTATAGCAGTCGA 59.441 50.000 0.00 0.00 0.00 4.20
346 1414 9.528018 TCCAGTTTTCTATTTTTGCAACTAAAG 57.472 29.630 0.00 0.00 0.00 1.85
410 1478 2.832733 TGTGTACACATCCGTCCCATTA 59.167 45.455 24.62 0.00 36.21 1.90
486 1554 3.508793 CCCAATCAATGCTAGGGCTATTG 59.491 47.826 0.00 0.00 37.81 1.90
699 1768 3.118298 TCTCGGCCATCAGATCAATTTCA 60.118 43.478 2.24 0.00 0.00 2.69
753 1825 5.106317 GCAAATCCTGAAATAAGAACCGTGA 60.106 40.000 0.00 0.00 0.00 4.35
911 1983 2.125106 GGTTGCCGCTCGGAGATT 60.125 61.111 13.11 0.00 37.50 2.40
940 2012 3.051210 CCGTGGAGCTCACTGTCA 58.949 61.111 17.19 0.10 43.94 3.58
1191 2271 3.439895 TTGCCGTTTGTTAAGGAAACC 57.560 42.857 5.01 0.00 37.27 3.27
1214 2294 4.105217 ACCATCATCAAAGGATATGGAGCA 59.895 41.667 6.65 0.00 37.69 4.26
1275 2357 4.242475 TGTACAAGCATGCACTAGTACAC 58.758 43.478 26.40 14.49 37.49 2.90
1418 2518 0.034616 GCTCAGCCTTGTCAGTCAGT 59.965 55.000 0.00 0.00 0.00 3.41
1527 2648 4.467084 GATGGCGGTCGGGCTTGA 62.467 66.667 5.55 0.00 42.84 3.02
1760 2913 1.374252 GAAGCCCGCTTCTTCGTCA 60.374 57.895 19.77 0.00 46.38 4.35
1923 3076 1.495878 CTGTAGTCGAGCATGGCATC 58.504 55.000 0.00 0.00 0.00 3.91
1989 3142 1.466167 CACCAAGCAATCCTTCAGACG 59.534 52.381 0.00 0.00 0.00 4.18
2012 3165 0.911769 CAGACACAATCCTAGGGCCA 59.088 55.000 9.46 0.00 0.00 5.36
2044 3197 4.195744 TCGCATTCGAGCATGATTAAAC 57.804 40.909 0.00 0.00 40.21 2.01
2393 3546 2.181125 TCCTTGTAACGACCATGCCTA 58.819 47.619 0.00 0.00 0.00 3.93
2487 3640 3.621715 CCTTTACCTTTGTCGCCATACTC 59.378 47.826 0.00 0.00 0.00 2.59
2496 3649 4.082190 GGAAATCAGGCCTTTACCTTTGTC 60.082 45.833 0.00 0.00 38.26 3.18
2564 3717 3.149005 TGACGGCCACCTAAAATCTTT 57.851 42.857 2.24 0.00 0.00 2.52
2796 3974 7.962918 GTGTTGCTACTTATGTAAGAAATGTGG 59.037 37.037 6.78 0.00 37.08 4.17
2839 4017 9.025041 TGATCTGAACTCTTCTACAAGTCAATA 57.975 33.333 0.00 0.00 0.00 1.90
2840 4018 7.901029 TGATCTGAACTCTTCTACAAGTCAAT 58.099 34.615 0.00 0.00 0.00 2.57
3409 4591 6.273825 AGTTTCTGTATATTAGGTGAGTGCG 58.726 40.000 0.00 0.00 0.00 5.34
3566 4751 5.324409 TGATACCTGTTTCTGATGCCTTTT 58.676 37.500 0.00 0.00 0.00 2.27
3793 4979 7.569297 TGAACATACAAGCAAGTAAAACTACG 58.431 34.615 0.00 0.00 0.00 3.51
3827 5013 1.743772 GCAGTGGACATCCGTAAGCAT 60.744 52.381 0.00 0.00 39.43 3.79
3832 5018 2.100749 CAGTATGCAGTGGACATCCGTA 59.899 50.000 0.00 0.00 39.43 4.02
3905 5091 9.013229 ACAGAATGCTGACAAGATATTAAACAA 57.987 29.630 8.02 0.00 45.17 2.83
3977 5163 9.286170 TGTATAAGTGTGTAGTCTAGGATCATC 57.714 37.037 0.00 0.00 0.00 2.92
3993 5179 7.837689 TCAGGGAGTGTATAAGTGTATAAGTGT 59.162 37.037 0.00 0.00 0.00 3.55
3994 5180 8.234136 TCAGGGAGTGTATAAGTGTATAAGTG 57.766 38.462 0.00 0.00 0.00 3.16
4000 5186 9.656323 AGAAATATCAGGGAGTGTATAAGTGTA 57.344 33.333 0.00 0.00 0.00 2.90
4118 5312 0.109132 GCAATCAAGAAACCCAGCGG 60.109 55.000 0.00 0.00 0.00 5.52
4156 5350 6.093495 ACGATTCAATAATCACCAACGTCATT 59.907 34.615 0.00 0.00 41.44 2.57
4209 5403 6.885918 AGACCTACTACTAGTTGAACTTCTCC 59.114 42.308 11.43 0.00 0.00 3.71
4269 5463 4.682787 TCAAACGACGAGCATTCATATCT 58.317 39.130 0.00 0.00 0.00 1.98
4408 5602 6.869315 TCATTTCCTTTTACACGACATCAA 57.131 33.333 0.00 0.00 0.00 2.57
4695 5897 5.971763 TGGGGCAAATACAATCACAAATAC 58.028 37.500 0.00 0.00 0.00 1.89
4706 5908 7.391833 GTGGAAAATTTAAATGGGGCAAATACA 59.608 33.333 0.39 0.00 0.00 2.29
4731 5933 6.478512 AACAATTTTGAGGTACAATGTGGT 57.521 33.333 0.00 0.00 38.36 4.16
4793 5995 2.620115 CTGGCCATCACACACATTATCC 59.380 50.000 5.51 0.00 0.00 2.59
4799 6001 2.617788 GGAATACTGGCCATCACACACA 60.618 50.000 5.51 0.00 0.00 3.72
4877 6493 0.172578 TGATTAGGCACACGAGGACG 59.827 55.000 0.00 0.00 45.75 4.79
4896 6512 2.586293 GCATGGGCCAGGTTTTGCT 61.586 57.895 20.60 0.00 0.00 3.91
4910 6526 6.700020 CGACAACTAGAACTAGATTTGCATG 58.300 40.000 14.64 0.00 36.97 4.06
4961 6577 0.108377 TATGCGACCACAAGCGATGT 60.108 50.000 0.00 0.00 45.34 3.06
5038 6654 0.250038 CATCCCCATCTACCAGCACG 60.250 60.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.