Multiple sequence alignment - TraesCS2A01G121300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G121300 | chr2A | 100.000 | 2190 | 0 | 0 | 428 | 2617 | 71112250 | 71114439 | 0.000000e+00 | 4045.0 |
1 | TraesCS2A01G121300 | chr2A | 88.786 | 651 | 63 | 8 | 1360 | 2006 | 71078583 | 71079227 | 0.000000e+00 | 789.0 |
2 | TraesCS2A01G121300 | chr2A | 91.042 | 480 | 38 | 2 | 695 | 1173 | 71073592 | 71074067 | 0.000000e+00 | 643.0 |
3 | TraesCS2A01G121300 | chr2A | 97.241 | 145 | 4 | 0 | 444 | 588 | 71073466 | 71073610 | 2.010000e-61 | 246.0 |
4 | TraesCS2A01G121300 | chr2A | 94.964 | 139 | 7 | 0 | 2479 | 2617 | 71158034 | 71158172 | 4.390000e-53 | 219.0 |
5 | TraesCS2A01G121300 | chr2A | 94.964 | 139 | 7 | 0 | 2479 | 2617 | 71210794 | 71210932 | 4.390000e-53 | 219.0 |
6 | TraesCS2A01G121300 | chr2A | 94.964 | 139 | 7 | 0 | 2479 | 2617 | 71263423 | 71263561 | 4.390000e-53 | 219.0 |
7 | TraesCS2A01G121300 | chr2A | 94.964 | 139 | 7 | 0 | 2479 | 2617 | 71312351 | 71312489 | 4.390000e-53 | 219.0 |
8 | TraesCS2A01G121300 | chr2A | 84.091 | 176 | 5 | 7 | 1199 | 1362 | 71074543 | 71074707 | 5.840000e-32 | 148.0 |
9 | TraesCS2A01G121300 | chr2A | 100.000 | 51 | 0 | 0 | 1 | 51 | 71111823 | 71111873 | 7.710000e-16 | 95.3 |
10 | TraesCS2A01G121300 | chr2D | 97.911 | 1580 | 27 | 3 | 428 | 2006 | 72651505 | 72653079 | 0.000000e+00 | 2730.0 |
11 | TraesCS2A01G121300 | chr2D | 97.658 | 1580 | 26 | 4 | 428 | 2006 | 72371050 | 72372619 | 0.000000e+00 | 2702.0 |
12 | TraesCS2A01G121300 | chr2D | 96.479 | 568 | 15 | 2 | 428 | 994 | 72627855 | 72628418 | 0.000000e+00 | 933.0 |
13 | TraesCS2A01G121300 | chr2D | 97.512 | 201 | 5 | 0 | 2417 | 2617 | 72653079 | 72653279 | 6.930000e-91 | 344.0 |
14 | TraesCS2A01G121300 | chr2D | 86.207 | 203 | 4 | 3 | 2417 | 2617 | 72372619 | 72372799 | 5.710000e-47 | 198.0 |
15 | TraesCS2A01G121300 | chr2B | 95.745 | 1551 | 50 | 8 | 428 | 1970 | 109082351 | 109083893 | 0.000000e+00 | 2484.0 |
16 | TraesCS2A01G121300 | chr2B | 96.894 | 1288 | 29 | 4 | 428 | 1713 | 109161609 | 109162887 | 0.000000e+00 | 2146.0 |
17 | TraesCS2A01G121300 | chr2B | 96.587 | 1289 | 32 | 8 | 428 | 1713 | 109789182 | 109790461 | 0.000000e+00 | 2126.0 |
18 | TraesCS2A01G121300 | chr2B | 88.520 | 662 | 66 | 9 | 1260 | 1919 | 109357666 | 109358319 | 0.000000e+00 | 793.0 |
19 | TraesCS2A01G121300 | chr2B | 90.503 | 358 | 30 | 4 | 433 | 788 | 109356852 | 109357207 | 1.100000e-128 | 470.0 |
20 | TraesCS2A01G121300 | chr2B | 88.487 | 304 | 13 | 5 | 1704 | 2006 | 109180351 | 109180633 | 5.360000e-92 | 348.0 |
21 | TraesCS2A01G121300 | chr2B | 97.512 | 201 | 5 | 0 | 2417 | 2617 | 109180633 | 109180833 | 6.930000e-91 | 344.0 |
22 | TraesCS2A01G121300 | chr2B | 97.512 | 201 | 5 | 0 | 2417 | 2617 | 109869024 | 109869224 | 6.930000e-91 | 344.0 |
23 | TraesCS2A01G121300 | chr2B | 97.015 | 201 | 6 | 0 | 2417 | 2617 | 109084123 | 109084323 | 3.230000e-89 | 339.0 |
24 | TraesCS2A01G121300 | chr2B | 96.111 | 180 | 5 | 2 | 1828 | 2006 | 109868846 | 109869024 | 2.550000e-75 | 292.0 |
25 | TraesCS2A01G121300 | chr2B | 94.483 | 145 | 8 | 0 | 984 | 1128 | 109357463 | 109357607 | 9.430000e-55 | 224.0 |
26 | TraesCS2A01G121300 | chr2B | 98.039 | 51 | 1 | 0 | 1 | 51 | 109161520 | 109161570 | 3.590000e-14 | 89.8 |
27 | TraesCS2A01G121300 | chr2B | 96.078 | 51 | 2 | 0 | 1 | 51 | 109076608 | 109076658 | 1.670000e-12 | 84.2 |
28 | TraesCS2A01G121300 | chr2B | 96.000 | 50 | 2 | 0 | 2 | 51 | 109356753 | 109356802 | 6.000000e-12 | 82.4 |
29 | TraesCS2A01G121300 | chr2B | 97.917 | 48 | 0 | 1 | 1 | 47 | 109789088 | 109789135 | 6.000000e-12 | 82.4 |
30 | TraesCS2A01G121300 | chr7A | 94.390 | 410 | 19 | 3 | 1996 | 2403 | 91381506 | 91381099 | 6.150000e-176 | 627.0 |
31 | TraesCS2A01G121300 | chr7A | 94.195 | 379 | 22 | 0 | 2025 | 2403 | 84489620 | 84489998 | 1.750000e-161 | 579.0 |
32 | TraesCS2A01G121300 | chr6B | 80.116 | 865 | 130 | 32 | 782 | 1620 | 176969891 | 176969043 | 8.010000e-170 | 606.0 |
33 | TraesCS2A01G121300 | chr6D | 93.797 | 403 | 24 | 1 | 1997 | 2399 | 81701495 | 81701896 | 2.880000e-169 | 604.0 |
34 | TraesCS2A01G121300 | chr6D | 93.995 | 383 | 22 | 1 | 2015 | 2397 | 466598693 | 466599074 | 1.750000e-161 | 579.0 |
35 | TraesCS2A01G121300 | chr6D | 83.845 | 489 | 69 | 8 | 772 | 1258 | 95787880 | 95788360 | 8.540000e-125 | 457.0 |
36 | TraesCS2A01G121300 | chr6D | 97.674 | 43 | 1 | 0 | 1 | 43 | 112914612 | 112914570 | 1.000000e-09 | 75.0 |
37 | TraesCS2A01G121300 | chr1A | 96.919 | 357 | 10 | 1 | 2047 | 2403 | 422493926 | 422493571 | 4.820000e-167 | 597.0 |
38 | TraesCS2A01G121300 | chr1A | 95.068 | 365 | 16 | 2 | 2039 | 2403 | 202323245 | 202322883 | 8.120000e-160 | 573.0 |
39 | TraesCS2A01G121300 | chr3A | 92.289 | 402 | 28 | 3 | 2002 | 2403 | 711691930 | 711691532 | 3.780000e-158 | 568.0 |
40 | TraesCS2A01G121300 | chr3A | 92.658 | 395 | 25 | 4 | 2009 | 2403 | 497108440 | 497108830 | 1.360000e-157 | 566.0 |
41 | TraesCS2A01G121300 | chr3A | 95.652 | 46 | 1 | 1 | 3 | 47 | 121652275 | 121652230 | 3.610000e-09 | 73.1 |
42 | TraesCS2A01G121300 | chr4D | 92.857 | 392 | 23 | 4 | 2010 | 2399 | 329894768 | 329894380 | 4.890000e-157 | 564.0 |
43 | TraesCS2A01G121300 | chrUn | 94.964 | 139 | 7 | 0 | 2479 | 2617 | 289659160 | 289659298 | 4.390000e-53 | 219.0 |
44 | TraesCS2A01G121300 | chr6A | 96.000 | 50 | 0 | 2 | 3 | 51 | 140568963 | 140568915 | 2.160000e-11 | 80.5 |
45 | TraesCS2A01G121300 | chr5D | 100.000 | 38 | 0 | 0 | 7 | 44 | 254834339 | 254834376 | 1.300000e-08 | 71.3 |
46 | TraesCS2A01G121300 | chr7B | 97.436 | 39 | 1 | 0 | 6 | 44 | 184497032 | 184496994 | 1.680000e-07 | 67.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G121300 | chr2A | 71111823 | 71114439 | 2616 | False | 2070.15 | 4045 | 100.0000 | 1 | 2617 | 2 | chr2A.!!$F6 | 2616 |
1 | TraesCS2A01G121300 | chr2A | 71073466 | 71079227 | 5761 | False | 456.50 | 789 | 90.2900 | 444 | 2006 | 4 | chr2A.!!$F5 | 1562 |
2 | TraesCS2A01G121300 | chr2D | 72651505 | 72653279 | 1774 | False | 1537.00 | 2730 | 97.7115 | 428 | 2617 | 2 | chr2D.!!$F3 | 2189 |
3 | TraesCS2A01G121300 | chr2D | 72371050 | 72372799 | 1749 | False | 1450.00 | 2702 | 91.9325 | 428 | 2617 | 2 | chr2D.!!$F2 | 2189 |
4 | TraesCS2A01G121300 | chr2D | 72627855 | 72628418 | 563 | False | 933.00 | 933 | 96.4790 | 428 | 994 | 1 | chr2D.!!$F1 | 566 |
5 | TraesCS2A01G121300 | chr2B | 109082351 | 109084323 | 1972 | False | 1411.50 | 2484 | 96.3800 | 428 | 2617 | 2 | chr2B.!!$F2 | 2189 |
6 | TraesCS2A01G121300 | chr2B | 109161520 | 109162887 | 1367 | False | 1117.90 | 2146 | 97.4665 | 1 | 1713 | 2 | chr2B.!!$F3 | 1712 |
7 | TraesCS2A01G121300 | chr2B | 109789088 | 109790461 | 1373 | False | 1104.20 | 2126 | 97.2520 | 1 | 1713 | 2 | chr2B.!!$F6 | 1712 |
8 | TraesCS2A01G121300 | chr2B | 109356753 | 109358319 | 1566 | False | 392.35 | 793 | 92.3765 | 2 | 1919 | 4 | chr2B.!!$F5 | 1917 |
9 | TraesCS2A01G121300 | chr6B | 176969043 | 176969891 | 848 | True | 606.00 | 606 | 80.1160 | 782 | 1620 | 1 | chr6B.!!$R1 | 838 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
840 | 884 | 4.557205 | GTGTGCTTATCTTATCCTACGGG | 58.443 | 47.826 | 0.0 | 0.0 | 0.0 | 5.28 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2414 | 7051 | 0.034186 | TAGGATTGCTTGCCACCAGG | 60.034 | 55.0 | 0.0 | 0.0 | 38.23 | 4.45 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
840 | 884 | 4.557205 | GTGTGCTTATCTTATCCTACGGG | 58.443 | 47.826 | 0.00 | 0.00 | 0.00 | 5.28 |
1153 | 1229 | 7.927629 | TCAACGTACACTACAAAAGTTAGGATT | 59.072 | 33.333 | 0.00 | 0.00 | 35.76 | 3.01 |
1367 | 5794 | 7.410407 | GCCTGTTTTTCGCTTGTTATATTGTTC | 60.410 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
1653 | 6086 | 5.872617 | TGATTAATCAACGTAGTGGACCAAG | 59.127 | 40.000 | 15.82 | 0.00 | 46.92 | 3.61 |
1821 | 6256 | 9.851686 | AACTTATCTACAATTCCAGCATTATGA | 57.148 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
2081 | 6718 | 2.846039 | ATATAGGGTCGCGCTATTCG | 57.154 | 50.000 | 17.00 | 0.00 | 39.65 | 3.34 |
2082 | 6719 | 1.527034 | TATAGGGTCGCGCTATTCGT | 58.473 | 50.000 | 17.00 | 0.00 | 39.65 | 3.85 |
2083 | 6720 | 0.240411 | ATAGGGTCGCGCTATTCGTC | 59.760 | 55.000 | 5.56 | 0.00 | 36.44 | 4.20 |
2084 | 6721 | 1.096967 | TAGGGTCGCGCTATTCGTCA | 61.097 | 55.000 | 5.56 | 0.00 | 41.07 | 4.35 |
2085 | 6722 | 2.228914 | GGGTCGCGCTATTCGTCAC | 61.229 | 63.158 | 5.56 | 0.00 | 41.07 | 3.67 |
2086 | 6723 | 2.228914 | GGTCGCGCTATTCGTCACC | 61.229 | 63.158 | 5.56 | 0.00 | 41.07 | 4.02 |
2087 | 6724 | 2.103538 | TCGCGCTATTCGTCACCC | 59.896 | 61.111 | 5.56 | 0.00 | 41.07 | 4.61 |
2088 | 6725 | 2.104331 | CGCGCTATTCGTCACCCT | 59.896 | 61.111 | 5.56 | 0.00 | 41.07 | 4.34 |
2089 | 6726 | 2.230940 | CGCGCTATTCGTCACCCTG | 61.231 | 63.158 | 5.56 | 0.00 | 41.07 | 4.45 |
2090 | 6727 | 1.883084 | GCGCTATTCGTCACCCTGG | 60.883 | 63.158 | 0.00 | 0.00 | 41.07 | 4.45 |
2091 | 6728 | 1.227263 | CGCTATTCGTCACCCTGGG | 60.227 | 63.158 | 12.28 | 12.28 | 0.00 | 4.45 |
2092 | 6729 | 1.905512 | GCTATTCGTCACCCTGGGT | 59.094 | 57.895 | 14.05 | 14.05 | 35.62 | 4.51 |
2103 | 6740 | 2.361085 | ACCCTGGGTGAGGAATAGTT | 57.639 | 50.000 | 19.82 | 0.00 | 46.33 | 2.24 |
2104 | 6741 | 3.502051 | ACCCTGGGTGAGGAATAGTTA | 57.498 | 47.619 | 19.82 | 0.00 | 46.33 | 2.24 |
2105 | 6742 | 4.022359 | ACCCTGGGTGAGGAATAGTTAT | 57.978 | 45.455 | 19.82 | 0.00 | 46.33 | 1.89 |
2106 | 6743 | 4.380791 | ACCCTGGGTGAGGAATAGTTATT | 58.619 | 43.478 | 19.82 | 0.00 | 46.33 | 1.40 |
2107 | 6744 | 4.412528 | ACCCTGGGTGAGGAATAGTTATTC | 59.587 | 45.833 | 19.82 | 3.75 | 46.33 | 1.75 |
2108 | 6745 | 4.660771 | CCCTGGGTGAGGAATAGTTATTCT | 59.339 | 45.833 | 3.97 | 0.00 | 46.33 | 2.40 |
2109 | 6746 | 5.132816 | CCCTGGGTGAGGAATAGTTATTCTT | 59.867 | 44.000 | 3.97 | 4.41 | 46.33 | 2.52 |
2110 | 6747 | 6.292150 | CCTGGGTGAGGAATAGTTATTCTTC | 58.708 | 44.000 | 13.90 | 13.90 | 46.33 | 2.87 |
2115 | 6752 | 6.248569 | TGAGGAATAGTTATTCTTCACCCC | 57.751 | 41.667 | 17.60 | 0.81 | 46.85 | 4.95 |
2116 | 6753 | 5.132144 | TGAGGAATAGTTATTCTTCACCCCC | 59.868 | 44.000 | 17.60 | 0.23 | 46.85 | 5.40 |
2117 | 6754 | 5.297799 | AGGAATAGTTATTCTTCACCCCCT | 58.702 | 41.667 | 10.71 | 0.00 | 41.33 | 4.79 |
2118 | 6755 | 5.369993 | AGGAATAGTTATTCTTCACCCCCTC | 59.630 | 44.000 | 10.71 | 0.00 | 41.33 | 4.30 |
2119 | 6756 | 5.369993 | GGAATAGTTATTCTTCACCCCCTCT | 59.630 | 44.000 | 10.71 | 0.00 | 41.33 | 3.69 |
2120 | 6757 | 6.464607 | GGAATAGTTATTCTTCACCCCCTCTC | 60.465 | 46.154 | 10.71 | 0.00 | 41.33 | 3.20 |
2121 | 6758 | 4.081695 | AGTTATTCTTCACCCCCTCTCT | 57.918 | 45.455 | 0.00 | 0.00 | 0.00 | 3.10 |
2122 | 6759 | 5.222278 | AGTTATTCTTCACCCCCTCTCTA | 57.778 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
2123 | 6760 | 5.600749 | AGTTATTCTTCACCCCCTCTCTAA | 58.399 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
2124 | 6761 | 6.213525 | AGTTATTCTTCACCCCCTCTCTAAT | 58.786 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2125 | 6762 | 6.678857 | AGTTATTCTTCACCCCCTCTCTAATT | 59.321 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
2126 | 6763 | 7.184753 | AGTTATTCTTCACCCCCTCTCTAATTT | 59.815 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
2127 | 6764 | 4.844349 | TCTTCACCCCCTCTCTAATTTG | 57.156 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
2128 | 6765 | 4.435137 | TCTTCACCCCCTCTCTAATTTGA | 58.565 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
2129 | 6766 | 4.225267 | TCTTCACCCCCTCTCTAATTTGAC | 59.775 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
2130 | 6767 | 2.500098 | TCACCCCCTCTCTAATTTGACG | 59.500 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2131 | 6768 | 2.236395 | CACCCCCTCTCTAATTTGACGT | 59.764 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
2132 | 6769 | 2.500504 | ACCCCCTCTCTAATTTGACGTC | 59.499 | 50.000 | 9.11 | 9.11 | 0.00 | 4.34 |
2133 | 6770 | 2.500098 | CCCCCTCTCTAATTTGACGTCA | 59.500 | 50.000 | 15.76 | 15.76 | 0.00 | 4.35 |
2134 | 6771 | 3.055385 | CCCCCTCTCTAATTTGACGTCAA | 60.055 | 47.826 | 26.53 | 26.53 | 0.00 | 3.18 |
2135 | 6772 | 4.384208 | CCCCCTCTCTAATTTGACGTCAAT | 60.384 | 45.833 | 30.10 | 19.28 | 35.55 | 2.57 |
2136 | 6773 | 4.572389 | CCCCTCTCTAATTTGACGTCAATG | 59.428 | 45.833 | 30.10 | 19.55 | 35.55 | 2.82 |
2137 | 6774 | 4.034510 | CCCTCTCTAATTTGACGTCAATGC | 59.965 | 45.833 | 30.10 | 0.00 | 35.55 | 3.56 |
2138 | 6775 | 4.631377 | CCTCTCTAATTTGACGTCAATGCA | 59.369 | 41.667 | 30.10 | 17.05 | 35.55 | 3.96 |
2139 | 6776 | 5.446473 | CCTCTCTAATTTGACGTCAATGCAC | 60.446 | 44.000 | 30.10 | 0.00 | 35.55 | 4.57 |
2140 | 6777 | 4.391830 | TCTCTAATTTGACGTCAATGCACC | 59.608 | 41.667 | 30.10 | 0.00 | 35.55 | 5.01 |
2141 | 6778 | 2.330231 | AATTTGACGTCAATGCACCG | 57.670 | 45.000 | 30.10 | 0.00 | 35.55 | 4.94 |
2142 | 6779 | 1.234821 | ATTTGACGTCAATGCACCGT | 58.765 | 45.000 | 30.10 | 9.01 | 35.55 | 4.83 |
2143 | 6780 | 1.867166 | TTTGACGTCAATGCACCGTA | 58.133 | 45.000 | 30.10 | 11.18 | 35.55 | 4.02 |
2144 | 6781 | 2.087501 | TTGACGTCAATGCACCGTAT | 57.912 | 45.000 | 26.53 | 0.00 | 34.51 | 3.06 |
2145 | 6782 | 2.087501 | TGACGTCAATGCACCGTATT | 57.912 | 45.000 | 17.62 | 0.00 | 34.51 | 1.89 |
2146 | 6783 | 2.418692 | TGACGTCAATGCACCGTATTT | 58.581 | 42.857 | 17.62 | 0.00 | 34.51 | 1.40 |
2147 | 6784 | 2.809119 | TGACGTCAATGCACCGTATTTT | 59.191 | 40.909 | 17.62 | 0.00 | 34.51 | 1.82 |
2148 | 6785 | 3.251245 | TGACGTCAATGCACCGTATTTTT | 59.749 | 39.130 | 17.62 | 0.00 | 34.51 | 1.94 |
2149 | 6786 | 4.451435 | TGACGTCAATGCACCGTATTTTTA | 59.549 | 37.500 | 17.62 | 0.00 | 34.51 | 1.52 |
2150 | 6787 | 4.965062 | ACGTCAATGCACCGTATTTTTAG | 58.035 | 39.130 | 0.00 | 0.00 | 32.22 | 1.85 |
2151 | 6788 | 4.142773 | ACGTCAATGCACCGTATTTTTAGG | 60.143 | 41.667 | 0.00 | 0.00 | 32.22 | 2.69 |
2152 | 6789 | 4.142773 | CGTCAATGCACCGTATTTTTAGGT | 60.143 | 41.667 | 0.00 | 0.00 | 39.12 | 3.08 |
2153 | 6790 | 5.618195 | CGTCAATGCACCGTATTTTTAGGTT | 60.618 | 40.000 | 0.00 | 0.00 | 35.85 | 3.50 |
2154 | 6791 | 6.153756 | GTCAATGCACCGTATTTTTAGGTTT | 58.846 | 36.000 | 0.00 | 0.00 | 35.85 | 3.27 |
2155 | 6792 | 6.307077 | GTCAATGCACCGTATTTTTAGGTTTC | 59.693 | 38.462 | 0.00 | 0.00 | 35.85 | 2.78 |
2156 | 6793 | 4.407496 | TGCACCGTATTTTTAGGTTTCG | 57.593 | 40.909 | 0.00 | 0.00 | 35.85 | 3.46 |
2157 | 6794 | 3.814283 | TGCACCGTATTTTTAGGTTTCGT | 59.186 | 39.130 | 0.00 | 0.00 | 35.85 | 3.85 |
2158 | 6795 | 4.993584 | TGCACCGTATTTTTAGGTTTCGTA | 59.006 | 37.500 | 0.00 | 0.00 | 35.85 | 3.43 |
2159 | 6796 | 5.468072 | TGCACCGTATTTTTAGGTTTCGTAA | 59.532 | 36.000 | 0.00 | 0.00 | 35.85 | 3.18 |
2160 | 6797 | 6.017605 | TGCACCGTATTTTTAGGTTTCGTAAA | 60.018 | 34.615 | 0.00 | 0.00 | 35.85 | 2.01 |
2161 | 6798 | 7.022979 | GCACCGTATTTTTAGGTTTCGTAAAT | 58.977 | 34.615 | 0.00 | 0.00 | 35.85 | 1.40 |
2162 | 6799 | 7.538334 | GCACCGTATTTTTAGGTTTCGTAAATT | 59.462 | 33.333 | 0.00 | 0.00 | 35.85 | 1.82 |
2163 | 6800 | 9.396938 | CACCGTATTTTTAGGTTTCGTAAATTT | 57.603 | 29.630 | 0.00 | 0.00 | 35.85 | 1.82 |
2164 | 6801 | 9.611284 | ACCGTATTTTTAGGTTTCGTAAATTTC | 57.389 | 29.630 | 0.00 | 0.00 | 33.96 | 2.17 |
2165 | 6802 | 9.609950 | CCGTATTTTTAGGTTTCGTAAATTTCA | 57.390 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
2175 | 6812 | 9.238368 | AGGTTTCGTAAATTTCATCCTATTTCA | 57.762 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
2180 | 6817 | 9.537192 | TCGTAAATTTCATCCTATTTCATACGT | 57.463 | 29.630 | 0.00 | 0.00 | 30.87 | 3.57 |
2192 | 6829 | 9.079833 | TCCTATTTCATACGTAAAAAGAGAACG | 57.920 | 33.333 | 20.94 | 10.73 | 42.17 | 3.95 |
2211 | 6848 | 9.609950 | AGAGAACGTAAGAAAATATATACTCGC | 57.390 | 33.333 | 0.00 | 0.00 | 43.62 | 5.03 |
2212 | 6849 | 8.739649 | AGAACGTAAGAAAATATATACTCGCC | 57.260 | 34.615 | 0.00 | 0.00 | 43.62 | 5.54 |
2213 | 6850 | 7.536622 | AGAACGTAAGAAAATATATACTCGCCG | 59.463 | 37.037 | 0.00 | 0.00 | 43.62 | 6.46 |
2214 | 6851 | 6.672147 | ACGTAAGAAAATATATACTCGCCGT | 58.328 | 36.000 | 0.00 | 0.00 | 43.62 | 5.68 |
2215 | 6852 | 7.806690 | ACGTAAGAAAATATATACTCGCCGTA | 58.193 | 34.615 | 0.00 | 0.00 | 43.62 | 4.02 |
2216 | 6853 | 8.289618 | ACGTAAGAAAATATATACTCGCCGTAA | 58.710 | 33.333 | 0.00 | 0.00 | 43.62 | 3.18 |
2217 | 6854 | 9.117145 | CGTAAGAAAATATATACTCGCCGTAAA | 57.883 | 33.333 | 0.00 | 0.00 | 43.02 | 2.01 |
2259 | 6896 | 9.842444 | TGTAAAGTTACGAACGTAAAAACATAC | 57.158 | 29.630 | 18.81 | 16.31 | 41.51 | 2.39 |
2260 | 6897 | 9.842444 | GTAAAGTTACGAACGTAAAAACATACA | 57.158 | 29.630 | 18.81 | 0.00 | 41.51 | 2.29 |
2361 | 6998 | 8.755696 | TGAATGTTACTATTTGCATTCCAAAC | 57.244 | 30.769 | 11.87 | 0.00 | 45.52 | 2.93 |
2362 | 6999 | 7.540400 | TGAATGTTACTATTTGCATTCCAAACG | 59.460 | 33.333 | 11.87 | 0.00 | 45.52 | 3.60 |
2363 | 7000 | 6.320494 | TGTTACTATTTGCATTCCAAACGT | 57.680 | 33.333 | 0.00 | 0.00 | 45.52 | 3.99 |
2364 | 7001 | 7.436430 | TGTTACTATTTGCATTCCAAACGTA | 57.564 | 32.000 | 0.00 | 0.00 | 45.52 | 3.57 |
2365 | 7002 | 7.872881 | TGTTACTATTTGCATTCCAAACGTAA | 58.127 | 30.769 | 0.00 | 0.00 | 45.52 | 3.18 |
2366 | 7003 | 8.516234 | TGTTACTATTTGCATTCCAAACGTAAT | 58.484 | 29.630 | 0.00 | 0.00 | 45.52 | 1.89 |
2367 | 7004 | 9.349145 | GTTACTATTTGCATTCCAAACGTAATT | 57.651 | 29.630 | 0.00 | 0.00 | 45.52 | 1.40 |
2368 | 7005 | 9.915629 | TTACTATTTGCATTCCAAACGTAATTT | 57.084 | 25.926 | 0.00 | 0.00 | 45.52 | 1.82 |
2369 | 7006 | 8.238481 | ACTATTTGCATTCCAAACGTAATTTG | 57.762 | 30.769 | 0.00 | 0.00 | 45.52 | 2.32 |
2370 | 7007 | 7.870445 | ACTATTTGCATTCCAAACGTAATTTGT | 59.130 | 29.630 | 0.00 | 0.00 | 45.52 | 2.83 |
2371 | 7008 | 6.910536 | TTTGCATTCCAAACGTAATTTGTT | 57.089 | 29.167 | 0.00 | 0.00 | 45.45 | 2.83 |
2372 | 7009 | 6.910536 | TTGCATTCCAAACGTAATTTGTTT | 57.089 | 29.167 | 0.00 | 3.43 | 45.45 | 2.83 |
2373 | 7010 | 8.420374 | TTTGCATTCCAAACGTAATTTGTTTA | 57.580 | 26.923 | 7.83 | 0.00 | 45.45 | 2.01 |
2374 | 7011 | 8.594881 | TTGCATTCCAAACGTAATTTGTTTAT | 57.405 | 26.923 | 7.83 | 0.00 | 45.45 | 1.40 |
2375 | 7012 | 8.012151 | TGCATTCCAAACGTAATTTGTTTATG | 57.988 | 30.769 | 7.83 | 9.17 | 45.45 | 1.90 |
2376 | 7013 | 7.867909 | TGCATTCCAAACGTAATTTGTTTATGA | 59.132 | 29.630 | 14.85 | 9.94 | 45.45 | 2.15 |
2377 | 7014 | 8.704234 | GCATTCCAAACGTAATTTGTTTATGAA | 58.296 | 29.630 | 14.85 | 14.92 | 45.45 | 2.57 |
2379 | 7016 | 7.861176 | TCCAAACGTAATTTGTTTATGAAGC | 57.139 | 32.000 | 7.83 | 0.00 | 45.45 | 3.86 |
2380 | 7017 | 6.579292 | TCCAAACGTAATTTGTTTATGAAGCG | 59.421 | 34.615 | 7.83 | 0.00 | 45.45 | 4.68 |
2381 | 7018 | 6.579292 | CCAAACGTAATTTGTTTATGAAGCGA | 59.421 | 34.615 | 7.83 | 0.00 | 45.45 | 4.93 |
2382 | 7019 | 7.272515 | CCAAACGTAATTTGTTTATGAAGCGAT | 59.727 | 33.333 | 7.83 | 0.00 | 45.45 | 4.58 |
2383 | 7020 | 7.948513 | AACGTAATTTGTTTATGAAGCGATC | 57.051 | 32.000 | 0.00 | 0.00 | 32.17 | 3.69 |
2384 | 7021 | 6.182634 | ACGTAATTTGTTTATGAAGCGATCG | 58.817 | 36.000 | 11.69 | 11.69 | 32.17 | 3.69 |
2385 | 7022 | 6.182634 | CGTAATTTGTTTATGAAGCGATCGT | 58.817 | 36.000 | 17.81 | 0.00 | 0.00 | 3.73 |
2386 | 7023 | 7.009448 | ACGTAATTTGTTTATGAAGCGATCGTA | 59.991 | 33.333 | 17.81 | 0.00 | 32.17 | 3.43 |
2387 | 7024 | 7.842239 | CGTAATTTGTTTATGAAGCGATCGTAA | 59.158 | 33.333 | 17.81 | 3.98 | 37.67 | 3.18 |
2388 | 7025 | 9.144085 | GTAATTTGTTTATGAAGCGATCGTAAG | 57.856 | 33.333 | 17.81 | 0.00 | 39.92 | 2.34 |
2402 | 7039 | 3.003394 | TCGTAAGATTACCTCGGGTGA | 57.997 | 47.619 | 5.90 | 0.00 | 45.01 | 4.02 |
2403 | 7040 | 3.559069 | TCGTAAGATTACCTCGGGTGAT | 58.441 | 45.455 | 5.90 | 3.33 | 45.01 | 3.06 |
2404 | 7041 | 3.956199 | TCGTAAGATTACCTCGGGTGATT | 59.044 | 43.478 | 5.90 | 0.00 | 45.01 | 2.57 |
2405 | 7042 | 5.132502 | TCGTAAGATTACCTCGGGTGATTA | 58.867 | 41.667 | 5.90 | 0.00 | 45.01 | 1.75 |
2406 | 7043 | 5.771666 | TCGTAAGATTACCTCGGGTGATTAT | 59.228 | 40.000 | 5.90 | 0.63 | 45.01 | 1.28 |
2407 | 7044 | 6.266103 | TCGTAAGATTACCTCGGGTGATTATT | 59.734 | 38.462 | 5.90 | 5.58 | 45.01 | 1.40 |
2408 | 7045 | 6.585322 | CGTAAGATTACCTCGGGTGATTATTC | 59.415 | 42.308 | 5.90 | 0.00 | 36.23 | 1.75 |
2409 | 7046 | 6.749036 | AAGATTACCTCGGGTGATTATTCT | 57.251 | 37.500 | 5.90 | 0.00 | 36.19 | 2.40 |
2410 | 7047 | 6.102897 | AGATTACCTCGGGTGATTATTCTG | 57.897 | 41.667 | 5.90 | 0.00 | 36.19 | 3.02 |
2411 | 7048 | 2.622064 | ACCTCGGGTGATTATTCTGC | 57.378 | 50.000 | 0.00 | 0.00 | 32.98 | 4.26 |
2412 | 7049 | 1.837439 | ACCTCGGGTGATTATTCTGCA | 59.163 | 47.619 | 0.00 | 0.00 | 32.98 | 4.41 |
2413 | 7050 | 2.213499 | CCTCGGGTGATTATTCTGCAC | 58.787 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
2503 | 7142 | 5.051641 | GCACCGAAATCTGAATAGTTAGACG | 60.052 | 44.000 | 0.00 | 0.00 | 0.00 | 4.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
1318 | 1861 | 4.984161 | CACATACATACGACATGCATGAGA | 59.016 | 41.667 | 32.75 | 14.32 | 0.00 | 3.27 |
1648 | 6081 | 3.319122 | GGACAGAAACATCAAAGCTTGGT | 59.681 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
1653 | 6086 | 3.426695 | CCGATGGACAGAAACATCAAAGC | 60.427 | 47.826 | 0.00 | 0.00 | 42.72 | 3.51 |
1819 | 6254 | 1.810151 | GCCCTGTGCGAATAAAAGTCA | 59.190 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
1821 | 6256 | 1.904287 | TGCCCTGTGCGAATAAAAGT | 58.096 | 45.000 | 0.00 | 0.00 | 45.60 | 2.66 |
2055 | 6692 | 9.038803 | CGAATAGCGCGACCCTATATATATATA | 57.961 | 37.037 | 12.10 | 11.21 | 0.00 | 0.86 |
2056 | 6693 | 7.551974 | ACGAATAGCGCGACCCTATATATATAT | 59.448 | 37.037 | 12.10 | 10.10 | 46.04 | 0.86 |
2057 | 6694 | 6.875726 | ACGAATAGCGCGACCCTATATATATA | 59.124 | 38.462 | 12.10 | 2.49 | 46.04 | 0.86 |
2058 | 6695 | 5.704515 | ACGAATAGCGCGACCCTATATATAT | 59.295 | 40.000 | 12.10 | 0.00 | 46.04 | 0.86 |
2059 | 6696 | 5.059161 | ACGAATAGCGCGACCCTATATATA | 58.941 | 41.667 | 12.10 | 0.00 | 46.04 | 0.86 |
2060 | 6697 | 3.881688 | ACGAATAGCGCGACCCTATATAT | 59.118 | 43.478 | 12.10 | 0.00 | 46.04 | 0.86 |
2061 | 6698 | 3.273434 | ACGAATAGCGCGACCCTATATA | 58.727 | 45.455 | 12.10 | 0.00 | 46.04 | 0.86 |
2062 | 6699 | 2.089980 | ACGAATAGCGCGACCCTATAT | 58.910 | 47.619 | 12.10 | 0.00 | 46.04 | 0.86 |
2063 | 6700 | 1.466167 | GACGAATAGCGCGACCCTATA | 59.534 | 52.381 | 12.10 | 0.00 | 46.04 | 1.31 |
2064 | 6701 | 0.240411 | GACGAATAGCGCGACCCTAT | 59.760 | 55.000 | 12.10 | 4.35 | 46.04 | 2.57 |
2065 | 6702 | 1.096967 | TGACGAATAGCGCGACCCTA | 61.097 | 55.000 | 12.10 | 1.47 | 46.04 | 3.53 |
2066 | 6703 | 2.412112 | GACGAATAGCGCGACCCT | 59.588 | 61.111 | 12.10 | 0.00 | 46.04 | 4.34 |
2067 | 6704 | 2.103538 | TGACGAATAGCGCGACCC | 59.896 | 61.111 | 12.10 | 0.00 | 46.04 | 4.46 |
2068 | 6705 | 2.228914 | GGTGACGAATAGCGCGACC | 61.229 | 63.158 | 12.10 | 0.00 | 46.04 | 4.79 |
2069 | 6706 | 2.228914 | GGGTGACGAATAGCGCGAC | 61.229 | 63.158 | 12.10 | 0.04 | 46.04 | 5.19 |
2070 | 6707 | 2.103538 | GGGTGACGAATAGCGCGA | 59.896 | 61.111 | 12.10 | 0.00 | 46.04 | 5.87 |
2071 | 6708 | 2.104331 | AGGGTGACGAATAGCGCG | 59.896 | 61.111 | 0.00 | 0.00 | 46.04 | 6.86 |
2072 | 6709 | 1.883084 | CCAGGGTGACGAATAGCGC | 60.883 | 63.158 | 0.00 | 0.00 | 46.04 | 5.92 |
2073 | 6710 | 1.956629 | ACCCAGGGTGACGAATAGCG | 61.957 | 60.000 | 11.70 | 0.00 | 39.57 | 4.26 |
2074 | 6711 | 1.905512 | ACCCAGGGTGACGAATAGC | 59.094 | 57.895 | 11.70 | 0.00 | 32.98 | 2.97 |
2081 | 6718 | 9.736671 | GAATAACTATTCCTCACCCAGGGTGAC | 62.737 | 48.148 | 34.62 | 17.53 | 44.45 | 3.67 |
2082 | 6719 | 7.827072 | GAATAACTATTCCTCACCCAGGGTGA | 61.827 | 46.154 | 35.32 | 35.32 | 45.54 | 4.02 |
2083 | 6720 | 5.687706 | GAATAACTATTCCTCACCCAGGGTG | 60.688 | 48.000 | 31.06 | 31.06 | 43.50 | 4.61 |
2084 | 6721 | 2.361085 | AACTATTCCTCACCCAGGGT | 57.639 | 50.000 | 4.76 | 4.76 | 43.67 | 4.34 |
2085 | 6722 | 4.660771 | AGAATAACTATTCCTCACCCAGGG | 59.339 | 45.833 | 2.85 | 2.85 | 43.67 | 4.45 |
2086 | 6723 | 5.896073 | AGAATAACTATTCCTCACCCAGG | 57.104 | 43.478 | 5.95 | 0.00 | 42.29 | 4.45 |
2087 | 6724 | 6.889198 | TGAAGAATAACTATTCCTCACCCAG | 58.111 | 40.000 | 6.65 | 0.00 | 42.29 | 4.45 |
2088 | 6725 | 6.884472 | TGAAGAATAACTATTCCTCACCCA | 57.116 | 37.500 | 6.65 | 0.00 | 42.29 | 4.51 |
2092 | 6729 | 5.132144 | GGGGGTGAAGAATAACTATTCCTCA | 59.868 | 44.000 | 6.65 | 6.65 | 42.29 | 3.86 |
2093 | 6730 | 5.369993 | AGGGGGTGAAGAATAACTATTCCTC | 59.630 | 44.000 | 5.95 | 4.07 | 42.29 | 3.71 |
2094 | 6731 | 5.297799 | AGGGGGTGAAGAATAACTATTCCT | 58.702 | 41.667 | 5.95 | 0.00 | 42.29 | 3.36 |
2095 | 6732 | 5.369993 | AGAGGGGGTGAAGAATAACTATTCC | 59.630 | 44.000 | 5.95 | 0.00 | 42.29 | 3.01 |
2096 | 6733 | 6.327887 | AGAGAGGGGGTGAAGAATAACTATTC | 59.672 | 42.308 | 1.83 | 1.83 | 41.78 | 1.75 |
2097 | 6734 | 6.213525 | AGAGAGGGGGTGAAGAATAACTATT | 58.786 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2098 | 6735 | 5.793967 | AGAGAGGGGGTGAAGAATAACTAT | 58.206 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
2099 | 6736 | 5.222278 | AGAGAGGGGGTGAAGAATAACTA | 57.778 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2100 | 6737 | 4.081695 | AGAGAGGGGGTGAAGAATAACT | 57.918 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
2101 | 6738 | 5.952347 | TTAGAGAGGGGGTGAAGAATAAC | 57.048 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
2102 | 6739 | 7.183839 | TCAAATTAGAGAGGGGGTGAAGAATAA | 59.816 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
2103 | 6740 | 6.676632 | TCAAATTAGAGAGGGGGTGAAGAATA | 59.323 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
2104 | 6741 | 5.492524 | TCAAATTAGAGAGGGGGTGAAGAAT | 59.507 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2105 | 6742 | 4.849810 | TCAAATTAGAGAGGGGGTGAAGAA | 59.150 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
2106 | 6743 | 4.225267 | GTCAAATTAGAGAGGGGGTGAAGA | 59.775 | 45.833 | 0.00 | 0.00 | 0.00 | 2.87 |
2107 | 6744 | 4.518249 | GTCAAATTAGAGAGGGGGTGAAG | 58.482 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
2108 | 6745 | 3.055385 | CGTCAAATTAGAGAGGGGGTGAA | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
2109 | 6746 | 2.500098 | CGTCAAATTAGAGAGGGGGTGA | 59.500 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2110 | 6747 | 2.236395 | ACGTCAAATTAGAGAGGGGGTG | 59.764 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2111 | 6748 | 2.500504 | GACGTCAAATTAGAGAGGGGGT | 59.499 | 50.000 | 11.55 | 0.00 | 0.00 | 4.95 |
2112 | 6749 | 2.500098 | TGACGTCAAATTAGAGAGGGGG | 59.500 | 50.000 | 17.62 | 0.00 | 0.00 | 5.40 |
2113 | 6750 | 3.887621 | TGACGTCAAATTAGAGAGGGG | 57.112 | 47.619 | 17.62 | 0.00 | 0.00 | 4.79 |
2114 | 6751 | 4.034510 | GCATTGACGTCAAATTAGAGAGGG | 59.965 | 45.833 | 32.69 | 13.54 | 39.55 | 4.30 |
2115 | 6752 | 4.631377 | TGCATTGACGTCAAATTAGAGAGG | 59.369 | 41.667 | 32.69 | 12.12 | 39.55 | 3.69 |
2116 | 6753 | 5.446473 | GGTGCATTGACGTCAAATTAGAGAG | 60.446 | 44.000 | 32.69 | 16.02 | 39.55 | 3.20 |
2117 | 6754 | 4.391830 | GGTGCATTGACGTCAAATTAGAGA | 59.608 | 41.667 | 32.69 | 9.96 | 39.55 | 3.10 |
2118 | 6755 | 4.651994 | GGTGCATTGACGTCAAATTAGAG | 58.348 | 43.478 | 32.69 | 18.73 | 39.55 | 2.43 |
2119 | 6756 | 3.124466 | CGGTGCATTGACGTCAAATTAGA | 59.876 | 43.478 | 32.69 | 11.54 | 39.55 | 2.10 |
2120 | 6757 | 3.120338 | ACGGTGCATTGACGTCAAATTAG | 60.120 | 43.478 | 32.69 | 22.44 | 39.55 | 1.73 |
2121 | 6758 | 2.809119 | ACGGTGCATTGACGTCAAATTA | 59.191 | 40.909 | 32.69 | 18.95 | 39.55 | 1.40 |
2122 | 6759 | 1.606668 | ACGGTGCATTGACGTCAAATT | 59.393 | 42.857 | 32.69 | 16.45 | 39.55 | 1.82 |
2123 | 6760 | 1.234821 | ACGGTGCATTGACGTCAAAT | 58.765 | 45.000 | 32.69 | 18.82 | 39.55 | 2.32 |
2124 | 6761 | 1.867166 | TACGGTGCATTGACGTCAAA | 58.133 | 45.000 | 32.69 | 15.69 | 41.53 | 2.69 |
2125 | 6762 | 2.087501 | ATACGGTGCATTGACGTCAA | 57.912 | 45.000 | 31.41 | 31.41 | 41.53 | 3.18 |
2126 | 6763 | 2.087501 | AATACGGTGCATTGACGTCA | 57.912 | 45.000 | 15.76 | 15.76 | 41.53 | 4.35 |
2127 | 6764 | 3.465122 | AAAATACGGTGCATTGACGTC | 57.535 | 42.857 | 9.11 | 9.11 | 41.53 | 4.34 |
2128 | 6765 | 3.907894 | AAAAATACGGTGCATTGACGT | 57.092 | 38.095 | 12.08 | 12.08 | 43.88 | 4.34 |
2129 | 6766 | 4.142773 | ACCTAAAAATACGGTGCATTGACG | 60.143 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
2130 | 6767 | 5.305139 | ACCTAAAAATACGGTGCATTGAC | 57.695 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
2131 | 6768 | 5.968528 | AACCTAAAAATACGGTGCATTGA | 57.031 | 34.783 | 0.00 | 0.00 | 0.00 | 2.57 |
2132 | 6769 | 5.285134 | CGAAACCTAAAAATACGGTGCATTG | 59.715 | 40.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2133 | 6770 | 5.048573 | ACGAAACCTAAAAATACGGTGCATT | 60.049 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2134 | 6771 | 4.456566 | ACGAAACCTAAAAATACGGTGCAT | 59.543 | 37.500 | 0.00 | 0.00 | 0.00 | 3.96 |
2135 | 6772 | 3.814283 | ACGAAACCTAAAAATACGGTGCA | 59.186 | 39.130 | 0.00 | 0.00 | 0.00 | 4.57 |
2136 | 6773 | 4.408993 | ACGAAACCTAAAAATACGGTGC | 57.591 | 40.909 | 0.00 | 0.00 | 0.00 | 5.01 |
2137 | 6774 | 8.953507 | AATTTACGAAACCTAAAAATACGGTG | 57.046 | 30.769 | 0.00 | 0.00 | 0.00 | 4.94 |
2138 | 6775 | 9.611284 | GAAATTTACGAAACCTAAAAATACGGT | 57.389 | 29.630 | 0.00 | 0.00 | 0.00 | 4.83 |
2139 | 6776 | 9.609950 | TGAAATTTACGAAACCTAAAAATACGG | 57.390 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
2149 | 6786 | 9.238368 | TGAAATAGGATGAAATTTACGAAACCT | 57.762 | 29.630 | 0.00 | 0.00 | 0.00 | 3.50 |
2154 | 6791 | 9.537192 | ACGTATGAAATAGGATGAAATTTACGA | 57.463 | 29.630 | 7.20 | 0.00 | 36.84 | 3.43 |
2166 | 6803 | 9.079833 | CGTTCTCTTTTTACGTATGAAATAGGA | 57.920 | 33.333 | 0.00 | 0.00 | 36.84 | 2.94 |
2167 | 6804 | 8.866956 | ACGTTCTCTTTTTACGTATGAAATAGG | 58.133 | 33.333 | 0.00 | 0.00 | 45.59 | 2.57 |
2171 | 6808 | 9.462174 | TCTTACGTTCTCTTTTTACGTATGAAA | 57.538 | 29.630 | 15.49 | 0.38 | 46.28 | 2.69 |
2173 | 6810 | 9.462174 | TTTCTTACGTTCTCTTTTTACGTATGA | 57.538 | 29.630 | 14.47 | 14.47 | 46.28 | 2.15 |
2185 | 6822 | 9.609950 | GCGAGTATATATTTTCTTACGTTCTCT | 57.390 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
2186 | 6823 | 8.848528 | GGCGAGTATATATTTTCTTACGTTCTC | 58.151 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
2187 | 6824 | 7.536622 | CGGCGAGTATATATTTTCTTACGTTCT | 59.463 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2188 | 6825 | 7.324616 | ACGGCGAGTATATATTTTCTTACGTTC | 59.675 | 37.037 | 16.62 | 0.00 | 0.00 | 3.95 |
2189 | 6826 | 7.141363 | ACGGCGAGTATATATTTTCTTACGTT | 58.859 | 34.615 | 16.62 | 0.00 | 0.00 | 3.99 |
2190 | 6827 | 6.672147 | ACGGCGAGTATATATTTTCTTACGT | 58.328 | 36.000 | 16.62 | 0.00 | 0.00 | 3.57 |
2191 | 6828 | 8.659569 | TTACGGCGAGTATATATTTTCTTACG | 57.340 | 34.615 | 16.62 | 0.00 | 34.88 | 3.18 |
2233 | 6870 | 9.842444 | GTATGTTTTTACGTTCGTAACTTTACA | 57.158 | 29.630 | 15.70 | 15.63 | 33.28 | 2.41 |
2234 | 6871 | 9.842444 | TGTATGTTTTTACGTTCGTAACTTTAC | 57.158 | 29.630 | 15.70 | 13.00 | 31.32 | 2.01 |
2335 | 6972 | 9.369904 | GTTTGGAATGCAAATAGTAACATTCAT | 57.630 | 29.630 | 15.64 | 0.00 | 46.51 | 2.57 |
2336 | 6973 | 7.540400 | CGTTTGGAATGCAAATAGTAACATTCA | 59.460 | 33.333 | 15.64 | 4.44 | 46.51 | 2.57 |
2337 | 6974 | 7.540745 | ACGTTTGGAATGCAAATAGTAACATTC | 59.459 | 33.333 | 2.74 | 8.72 | 44.85 | 2.67 |
2338 | 6975 | 7.375053 | ACGTTTGGAATGCAAATAGTAACATT | 58.625 | 30.769 | 2.74 | 0.00 | 35.52 | 2.71 |
2339 | 6976 | 6.919721 | ACGTTTGGAATGCAAATAGTAACAT | 58.080 | 32.000 | 2.74 | 0.00 | 0.00 | 2.71 |
2340 | 6977 | 6.320494 | ACGTTTGGAATGCAAATAGTAACA | 57.680 | 33.333 | 2.74 | 0.00 | 0.00 | 2.41 |
2341 | 6978 | 8.905103 | ATTACGTTTGGAATGCAAATAGTAAC | 57.095 | 30.769 | 22.17 | 4.68 | 34.18 | 2.50 |
2342 | 6979 | 9.915629 | AAATTACGTTTGGAATGCAAATAGTAA | 57.084 | 25.926 | 22.07 | 22.07 | 34.93 | 2.24 |
2343 | 6980 | 9.347934 | CAAATTACGTTTGGAATGCAAATAGTA | 57.652 | 29.630 | 2.74 | 8.46 | 42.79 | 1.82 |
2344 | 6981 | 8.238481 | CAAATTACGTTTGGAATGCAAATAGT | 57.762 | 30.769 | 2.74 | 9.37 | 42.79 | 2.12 |
2358 | 6995 | 7.215568 | CGATCGCTTCATAAACAAATTACGTTT | 59.784 | 33.333 | 0.26 | 9.95 | 39.75 | 3.60 |
2359 | 6996 | 6.681178 | CGATCGCTTCATAAACAAATTACGTT | 59.319 | 34.615 | 0.26 | 0.00 | 0.00 | 3.99 |
2360 | 6997 | 6.182634 | CGATCGCTTCATAAACAAATTACGT | 58.817 | 36.000 | 0.26 | 0.00 | 0.00 | 3.57 |
2361 | 6998 | 6.182634 | ACGATCGCTTCATAAACAAATTACG | 58.817 | 36.000 | 16.60 | 0.00 | 0.00 | 3.18 |
2362 | 6999 | 9.144085 | CTTACGATCGCTTCATAAACAAATTAC | 57.856 | 33.333 | 16.60 | 0.00 | 0.00 | 1.89 |
2363 | 7000 | 9.089601 | TCTTACGATCGCTTCATAAACAAATTA | 57.910 | 29.630 | 16.60 | 0.00 | 0.00 | 1.40 |
2364 | 7001 | 7.970384 | TCTTACGATCGCTTCATAAACAAATT | 58.030 | 30.769 | 16.60 | 0.00 | 0.00 | 1.82 |
2365 | 7002 | 7.534085 | TCTTACGATCGCTTCATAAACAAAT | 57.466 | 32.000 | 16.60 | 0.00 | 0.00 | 2.32 |
2366 | 7003 | 6.954616 | TCTTACGATCGCTTCATAAACAAA | 57.045 | 33.333 | 16.60 | 0.00 | 0.00 | 2.83 |
2367 | 7004 | 7.534085 | AATCTTACGATCGCTTCATAAACAA | 57.466 | 32.000 | 16.60 | 0.00 | 0.00 | 2.83 |
2368 | 7005 | 7.168637 | GGTAATCTTACGATCGCTTCATAAACA | 59.831 | 37.037 | 16.60 | 0.00 | 34.50 | 2.83 |
2369 | 7006 | 7.381678 | AGGTAATCTTACGATCGCTTCATAAAC | 59.618 | 37.037 | 16.60 | 5.11 | 34.50 | 2.01 |
2370 | 7007 | 7.431249 | AGGTAATCTTACGATCGCTTCATAAA | 58.569 | 34.615 | 16.60 | 0.00 | 34.50 | 1.40 |
2371 | 7008 | 6.978338 | AGGTAATCTTACGATCGCTTCATAA | 58.022 | 36.000 | 16.60 | 4.99 | 34.50 | 1.90 |
2372 | 7009 | 6.570672 | AGGTAATCTTACGATCGCTTCATA | 57.429 | 37.500 | 16.60 | 0.00 | 34.50 | 2.15 |
2373 | 7010 | 5.455056 | AGGTAATCTTACGATCGCTTCAT | 57.545 | 39.130 | 16.60 | 0.00 | 34.50 | 2.57 |
2374 | 7011 | 4.554134 | CGAGGTAATCTTACGATCGCTTCA | 60.554 | 45.833 | 16.60 | 0.00 | 37.02 | 3.02 |
2375 | 7012 | 3.907194 | CGAGGTAATCTTACGATCGCTTC | 59.093 | 47.826 | 16.60 | 1.12 | 37.02 | 3.86 |
2376 | 7013 | 3.304525 | CCGAGGTAATCTTACGATCGCTT | 60.305 | 47.826 | 16.60 | 0.00 | 39.81 | 4.68 |
2377 | 7014 | 2.225963 | CCGAGGTAATCTTACGATCGCT | 59.774 | 50.000 | 16.60 | 5.20 | 39.81 | 4.93 |
2378 | 7015 | 2.582687 | CCGAGGTAATCTTACGATCGC | 58.417 | 52.381 | 16.60 | 0.00 | 39.81 | 4.58 |
2379 | 7016 | 2.551459 | ACCCGAGGTAATCTTACGATCG | 59.449 | 50.000 | 14.88 | 14.88 | 40.33 | 3.69 |
2380 | 7017 | 3.567164 | TCACCCGAGGTAATCTTACGATC | 59.433 | 47.826 | 0.00 | 0.00 | 32.11 | 3.69 |
2381 | 7018 | 3.559069 | TCACCCGAGGTAATCTTACGAT | 58.441 | 45.455 | 0.00 | 0.00 | 32.11 | 3.73 |
2382 | 7019 | 3.003394 | TCACCCGAGGTAATCTTACGA | 57.997 | 47.619 | 0.00 | 0.00 | 32.11 | 3.43 |
2383 | 7020 | 4.317671 | AATCACCCGAGGTAATCTTACG | 57.682 | 45.455 | 0.00 | 0.00 | 32.11 | 3.18 |
2384 | 7021 | 7.599245 | CAGAATAATCACCCGAGGTAATCTTAC | 59.401 | 40.741 | 0.00 | 0.00 | 32.11 | 2.34 |
2385 | 7022 | 7.667557 | CAGAATAATCACCCGAGGTAATCTTA | 58.332 | 38.462 | 0.00 | 0.00 | 32.11 | 2.10 |
2386 | 7023 | 6.525629 | CAGAATAATCACCCGAGGTAATCTT | 58.474 | 40.000 | 0.00 | 0.00 | 32.11 | 2.40 |
2387 | 7024 | 5.511545 | GCAGAATAATCACCCGAGGTAATCT | 60.512 | 44.000 | 0.00 | 0.00 | 32.11 | 2.40 |
2388 | 7025 | 4.691216 | GCAGAATAATCACCCGAGGTAATC | 59.309 | 45.833 | 0.00 | 0.00 | 32.11 | 1.75 |
2389 | 7026 | 4.102524 | TGCAGAATAATCACCCGAGGTAAT | 59.897 | 41.667 | 0.00 | 0.00 | 32.11 | 1.89 |
2390 | 7027 | 3.452990 | TGCAGAATAATCACCCGAGGTAA | 59.547 | 43.478 | 0.00 | 0.00 | 32.11 | 2.85 |
2391 | 7028 | 3.035363 | TGCAGAATAATCACCCGAGGTA | 58.965 | 45.455 | 0.00 | 0.00 | 32.11 | 3.08 |
2392 | 7029 | 1.837439 | TGCAGAATAATCACCCGAGGT | 59.163 | 47.619 | 0.00 | 0.00 | 35.62 | 3.85 |
2393 | 7030 | 2.213499 | GTGCAGAATAATCACCCGAGG | 58.787 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
2394 | 7031 | 2.213499 | GGTGCAGAATAATCACCCGAG | 58.787 | 52.381 | 0.00 | 0.00 | 43.27 | 4.63 |
2395 | 7032 | 2.325583 | GGTGCAGAATAATCACCCGA | 57.674 | 50.000 | 0.00 | 0.00 | 43.27 | 5.14 |
2399 | 7036 | 2.684881 | CACCAGGGTGCAGAATAATCAC | 59.315 | 50.000 | 5.38 | 0.00 | 39.39 | 3.06 |
2400 | 7037 | 2.357050 | CCACCAGGGTGCAGAATAATCA | 60.357 | 50.000 | 13.03 | 0.00 | 44.16 | 2.57 |
2401 | 7038 | 2.301346 | CCACCAGGGTGCAGAATAATC | 58.699 | 52.381 | 13.03 | 0.00 | 44.16 | 1.75 |
2402 | 7039 | 1.686115 | GCCACCAGGGTGCAGAATAAT | 60.686 | 52.381 | 13.03 | 0.00 | 44.16 | 1.28 |
2403 | 7040 | 0.323360 | GCCACCAGGGTGCAGAATAA | 60.323 | 55.000 | 13.03 | 0.00 | 44.16 | 1.40 |
2404 | 7041 | 1.302949 | GCCACCAGGGTGCAGAATA | 59.697 | 57.895 | 13.03 | 0.00 | 44.16 | 1.75 |
2405 | 7042 | 2.036256 | GCCACCAGGGTGCAGAAT | 59.964 | 61.111 | 13.03 | 0.00 | 44.16 | 2.40 |
2406 | 7043 | 2.981914 | CTTGCCACCAGGGTGCAGAA | 62.982 | 60.000 | 13.03 | 4.30 | 44.16 | 3.02 |
2407 | 7044 | 3.496309 | CTTGCCACCAGGGTGCAGA | 62.496 | 63.158 | 13.03 | 0.03 | 44.16 | 4.26 |
2408 | 7045 | 2.987547 | CTTGCCACCAGGGTGCAG | 60.988 | 66.667 | 13.03 | 4.79 | 44.16 | 4.41 |
2411 | 7048 | 1.880819 | GATTGCTTGCCACCAGGGTG | 61.881 | 60.000 | 11.55 | 11.55 | 45.02 | 4.61 |
2412 | 7049 | 1.607467 | GATTGCTTGCCACCAGGGT | 60.607 | 57.895 | 0.00 | 0.00 | 39.65 | 4.34 |
2413 | 7050 | 2.353610 | GGATTGCTTGCCACCAGGG | 61.354 | 63.158 | 0.00 | 0.00 | 40.85 | 4.45 |
2414 | 7051 | 0.034186 | TAGGATTGCTTGCCACCAGG | 60.034 | 55.000 | 0.00 | 0.00 | 38.23 | 4.45 |
2415 | 7052 | 1.838112 | TTAGGATTGCTTGCCACCAG | 58.162 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2503 | 7142 | 3.485216 | CGGCGATGAAGGTTTACATTGTC | 60.485 | 47.826 | 0.00 | 0.00 | 32.37 | 3.18 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.