Multiple sequence alignment - TraesCS2A01G121200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G121200 | chr2A | 100.000 | 4276 | 0 | 0 | 1 | 4276 | 70983323 | 70987598 | 0.000000e+00 | 7897.0 |
1 | TraesCS2A01G121200 | chr2A | 95.706 | 163 | 7 | 0 | 2262 | 2424 | 578387717 | 578387555 | 3.280000e-66 | 263.0 |
2 | TraesCS2A01G121200 | chr2A | 93.529 | 170 | 9 | 2 | 2260 | 2429 | 342647562 | 342647395 | 7.100000e-63 | 252.0 |
3 | TraesCS2A01G121200 | chr2A | 90.506 | 158 | 15 | 0 | 443 | 600 | 190772488 | 190772645 | 4.330000e-50 | 209.0 |
4 | TraesCS2A01G121200 | chr2A | 86.598 | 194 | 17 | 5 | 659 | 845 | 190772484 | 190772675 | 5.600000e-49 | 206.0 |
5 | TraesCS2A01G121200 | chr2A | 83.333 | 78 | 11 | 1 | 3729 | 3806 | 729178531 | 729178606 | 2.130000e-08 | 71.3 |
6 | TraesCS2A01G121200 | chr2D | 94.494 | 1344 | 62 | 6 | 895 | 2230 | 72170274 | 72171613 | 0.000000e+00 | 2061.0 |
7 | TraesCS2A01G121200 | chr2D | 92.473 | 1116 | 41 | 19 | 2434 | 3533 | 72171613 | 72172701 | 0.000000e+00 | 1555.0 |
8 | TraesCS2A01G121200 | chr2D | 91.810 | 757 | 34 | 11 | 3537 | 4276 | 72172775 | 72173520 | 0.000000e+00 | 1029.0 |
9 | TraesCS2A01G121200 | chr2D | 89.735 | 604 | 40 | 10 | 3 | 600 | 72169371 | 72169958 | 0.000000e+00 | 752.0 |
10 | TraesCS2A01G121200 | chr2D | 95.152 | 165 | 7 | 1 | 2262 | 2426 | 362930969 | 362930806 | 4.240000e-65 | 259.0 |
11 | TraesCS2A01G121200 | chr2D | 86.885 | 244 | 14 | 7 | 4049 | 4276 | 524087271 | 524087512 | 1.530000e-64 | 257.0 |
12 | TraesCS2A01G121200 | chr2D | 93.077 | 130 | 6 | 3 | 4148 | 4276 | 38263980 | 38263853 | 2.030000e-43 | 187.0 |
13 | TraesCS2A01G121200 | chr2D | 86.782 | 174 | 16 | 4 | 663 | 831 | 72169802 | 72169973 | 2.030000e-43 | 187.0 |
14 | TraesCS2A01G121200 | chr2B | 93.209 | 751 | 51 | 0 | 894 | 1644 | 108904735 | 108905485 | 0.000000e+00 | 1105.0 |
15 | TraesCS2A01G121200 | chr2B | 91.506 | 624 | 42 | 5 | 1643 | 2263 | 108905568 | 108906183 | 0.000000e+00 | 848.0 |
16 | TraesCS2A01G121200 | chr2B | 92.115 | 558 | 27 | 9 | 2988 | 3533 | 108906689 | 108907241 | 0.000000e+00 | 771.0 |
17 | TraesCS2A01G121200 | chr2B | 88.658 | 529 | 39 | 18 | 2422 | 2948 | 108906181 | 108906690 | 3.630000e-175 | 625.0 |
18 | TraesCS2A01G121200 | chr2B | 83.254 | 627 | 52 | 22 | 6 | 614 | 108903852 | 108904443 | 1.050000e-145 | 527.0 |
19 | TraesCS2A01G121200 | chr2B | 86.929 | 482 | 25 | 9 | 3811 | 4275 | 108907553 | 108908013 | 1.370000e-139 | 507.0 |
20 | TraesCS2A01G121200 | chr2B | 92.105 | 228 | 18 | 0 | 3537 | 3764 | 108907326 | 108907553 | 5.330000e-84 | 322.0 |
21 | TraesCS2A01G121200 | chr2B | 91.139 | 158 | 14 | 0 | 443 | 600 | 779218251 | 779218408 | 9.310000e-52 | 215.0 |
22 | TraesCS2A01G121200 | chr6A | 85.347 | 389 | 25 | 17 | 3916 | 4276 | 49088070 | 49087686 | 1.450000e-99 | 374.0 |
23 | TraesCS2A01G121200 | chr6A | 84.834 | 211 | 18 | 4 | 3666 | 3868 | 49088263 | 49088059 | 2.610000e-47 | 200.0 |
24 | TraesCS2A01G121200 | chr6B | 94.706 | 170 | 6 | 3 | 2262 | 2430 | 132353416 | 132353583 | 1.180000e-65 | 261.0 |
25 | TraesCS2A01G121200 | chr6B | 91.139 | 158 | 14 | 0 | 443 | 600 | 695975326 | 695975483 | 9.310000e-52 | 215.0 |
26 | TraesCS2A01G121200 | chr6B | 85.567 | 194 | 19 | 5 | 659 | 845 | 695975322 | 695975513 | 1.210000e-45 | 195.0 |
27 | TraesCS2A01G121200 | chr4D | 92.857 | 182 | 9 | 3 | 2261 | 2440 | 34661526 | 34661705 | 1.180000e-65 | 261.0 |
28 | TraesCS2A01G121200 | chr3D | 95.122 | 164 | 7 | 1 | 2262 | 2425 | 537154702 | 537154864 | 1.530000e-64 | 257.0 |
29 | TraesCS2A01G121200 | chr1D | 94.118 | 170 | 9 | 1 | 2262 | 2431 | 463382066 | 463381898 | 1.530000e-64 | 257.0 |
30 | TraesCS2A01G121200 | chr5B | 92.571 | 175 | 12 | 1 | 2253 | 2427 | 45271615 | 45271442 | 2.550000e-62 | 250.0 |
31 | TraesCS2A01G121200 | chr5B | 89.634 | 164 | 17 | 0 | 443 | 606 | 515117705 | 515117542 | 4.330000e-50 | 209.0 |
32 | TraesCS2A01G121200 | chr5B | 90.506 | 158 | 15 | 0 | 443 | 600 | 655868043 | 655868200 | 4.330000e-50 | 209.0 |
33 | TraesCS2A01G121200 | chr5B | 85.052 | 194 | 20 | 5 | 659 | 845 | 515117709 | 515117518 | 5.640000e-44 | 189.0 |
34 | TraesCS2A01G121200 | chr5B | 83.854 | 192 | 23 | 6 | 659 | 845 | 47274122 | 47274310 | 4.390000e-40 | 176.0 |
35 | TraesCS2A01G121200 | chr1B | 92.090 | 177 | 12 | 2 | 2262 | 2437 | 623195844 | 623195669 | 9.180000e-62 | 248.0 |
36 | TraesCS2A01G121200 | chrUn | 90.506 | 158 | 15 | 0 | 443 | 600 | 88594941 | 88595098 | 4.330000e-50 | 209.0 |
37 | TraesCS2A01G121200 | chrUn | 85.052 | 194 | 20 | 5 | 659 | 845 | 48554117 | 48553926 | 5.640000e-44 | 189.0 |
38 | TraesCS2A01G121200 | chrUn | 85.714 | 175 | 17 | 6 | 1637 | 1805 | 312812012 | 312811840 | 1.220000e-40 | 178.0 |
39 | TraesCS2A01G121200 | chrUn | 85.714 | 175 | 17 | 6 | 1637 | 1805 | 397496500 | 397496328 | 1.220000e-40 | 178.0 |
40 | TraesCS2A01G121200 | chr3B | 89.634 | 164 | 17 | 0 | 443 | 606 | 706296587 | 706296424 | 4.330000e-50 | 209.0 |
41 | TraesCS2A01G121200 | chr3B | 90.506 | 158 | 14 | 1 | 443 | 600 | 714329039 | 714329195 | 1.560000e-49 | 207.0 |
42 | TraesCS2A01G121200 | chr3B | 86.010 | 193 | 19 | 6 | 659 | 845 | 714329035 | 714329225 | 2.610000e-47 | 200.0 |
43 | TraesCS2A01G121200 | chr7B | 84.974 | 193 | 22 | 5 | 659 | 845 | 3437918 | 3437727 | 5.640000e-44 | 189.0 |
44 | TraesCS2A01G121200 | chr7B | 82.979 | 94 | 14 | 1 | 3731 | 3824 | 120364077 | 120363986 | 2.740000e-12 | 84.2 |
45 | TraesCS2A01G121200 | chr7A | 85.714 | 175 | 17 | 6 | 1637 | 1805 | 628966111 | 628965939 | 1.220000e-40 | 178.0 |
46 | TraesCS2A01G121200 | chr7A | 80.392 | 102 | 12 | 3 | 3711 | 3806 | 678949339 | 678949438 | 2.130000e-08 | 71.3 |
47 | TraesCS2A01G121200 | chr5A | 85.714 | 175 | 17 | 6 | 1637 | 1805 | 31626329 | 31626157 | 1.220000e-40 | 178.0 |
48 | TraesCS2A01G121200 | chr5A | 85.714 | 175 | 17 | 6 | 1637 | 1805 | 31744311 | 31744139 | 1.220000e-40 | 178.0 |
49 | TraesCS2A01G121200 | chr5A | 85.714 | 175 | 17 | 6 | 1637 | 1805 | 31833520 | 31833348 | 1.220000e-40 | 178.0 |
50 | TraesCS2A01G121200 | chr5A | 85.714 | 175 | 17 | 6 | 1637 | 1805 | 31933606 | 31933434 | 1.220000e-40 | 178.0 |
51 | TraesCS2A01G121200 | chr4A | 80.928 | 194 | 17 | 6 | 659 | 845 | 664674926 | 664675106 | 7.460000e-28 | 135.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G121200 | chr2A | 70983323 | 70987598 | 4275 | False | 7897.000000 | 7897 | 100.000000 | 1 | 4276 | 1 | chr2A.!!$F1 | 4275 |
1 | TraesCS2A01G121200 | chr2D | 72169371 | 72173520 | 4149 | False | 1116.800000 | 2061 | 91.058800 | 3 | 4276 | 5 | chr2D.!!$F2 | 4273 |
2 | TraesCS2A01G121200 | chr2B | 108903852 | 108908013 | 4161 | False | 672.142857 | 1105 | 89.682286 | 6 | 4275 | 7 | chr2B.!!$F2 | 4269 |
3 | TraesCS2A01G121200 | chr6A | 49087686 | 49088263 | 577 | True | 287.000000 | 374 | 85.090500 | 3666 | 4276 | 2 | chr6A.!!$R1 | 610 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
669 | 710 | 0.107017 | CATGCTCTGGATTCGGGGTT | 60.107 | 55.0 | 0.0 | 0.0 | 0.0 | 4.11 | F |
971 | 1050 | 0.249868 | TGTCCTGTTGCTTCACTCCG | 60.250 | 55.0 | 0.0 | 0.0 | 0.0 | 4.63 | F |
2278 | 2447 | 0.106318 | GGTACTCCCTCCGCTCCTAA | 60.106 | 60.0 | 0.0 | 0.0 | 0.0 | 2.69 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1569 | 1648 | 0.550914 | AGCAACACCTGGGAGACAAA | 59.449 | 50.000 | 0.0 | 0.0 | 0.0 | 2.83 | R |
2408 | 2577 | 1.288335 | ACATCTACTCCCTCCGTTCCT | 59.712 | 52.381 | 0.0 | 0.0 | 0.0 | 3.36 | R |
4170 | 4485 | 0.327924 | TCAATCCACGGTTGCCATCT | 59.672 | 50.000 | 0.0 | 0.0 | 0.0 | 2.90 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
56 | 64 | 1.078115 | CATCATCCATCCCATCCCCA | 58.922 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
57 | 65 | 1.005569 | CATCATCCATCCCATCCCCAG | 59.994 | 57.143 | 0.00 | 0.00 | 0.00 | 4.45 |
100 | 113 | 1.205055 | CCTTCCTCCTCCCCAACTAC | 58.795 | 60.000 | 0.00 | 0.00 | 0.00 | 2.73 |
101 | 114 | 1.273896 | CCTTCCTCCTCCCCAACTACT | 60.274 | 57.143 | 0.00 | 0.00 | 0.00 | 2.57 |
102 | 115 | 2.112190 | CTTCCTCCTCCCCAACTACTC | 58.888 | 57.143 | 0.00 | 0.00 | 0.00 | 2.59 |
103 | 116 | 0.338814 | TCCTCCTCCCCAACTACTCC | 59.661 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
104 | 117 | 0.340208 | CCTCCTCCCCAACTACTCCT | 59.660 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
197 | 217 | 1.393883 | GGTCTGCGAAATTCGTTCTCC | 59.606 | 52.381 | 17.05 | 10.75 | 42.81 | 3.71 |
244 | 264 | 0.393808 | TAGTTTTGGCCCGGATCTGC | 60.394 | 55.000 | 0.73 | 0.00 | 0.00 | 4.26 |
245 | 265 | 2.749839 | TTTTGGCCCGGATCTGCG | 60.750 | 61.111 | 0.73 | 0.00 | 0.00 | 5.18 |
309 | 331 | 4.101448 | GCCCCGATCTGCCTGTGT | 62.101 | 66.667 | 0.00 | 0.00 | 0.00 | 3.72 |
315 | 337 | 1.503542 | GATCTGCCTGTGTTTGCGG | 59.496 | 57.895 | 0.00 | 0.00 | 35.14 | 5.69 |
322 | 344 | 2.289756 | TGCCTGTGTTTGCGGAGTTATA | 60.290 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
328 | 350 | 3.002348 | GTGTTTGCGGAGTTATATGCTCC | 59.998 | 47.826 | 14.65 | 14.65 | 46.75 | 4.70 |
334 | 356 | 2.408050 | GGAGTTATATGCTCCTGTGCG | 58.592 | 52.381 | 16.44 | 0.00 | 46.71 | 5.34 |
335 | 357 | 2.224066 | GGAGTTATATGCTCCTGTGCGT | 60.224 | 50.000 | 16.44 | 0.00 | 46.71 | 5.24 |
336 | 358 | 2.797156 | GAGTTATATGCTCCTGTGCGTG | 59.203 | 50.000 | 0.00 | 0.00 | 35.36 | 5.34 |
337 | 359 | 1.867233 | GTTATATGCTCCTGTGCGTGG | 59.133 | 52.381 | 0.00 | 0.00 | 35.36 | 4.94 |
338 | 360 | 1.119684 | TATATGCTCCTGTGCGTGGT | 58.880 | 50.000 | 0.00 | 0.00 | 35.36 | 4.16 |
339 | 361 | 0.179073 | ATATGCTCCTGTGCGTGGTC | 60.179 | 55.000 | 0.00 | 0.00 | 35.36 | 4.02 |
403 | 425 | 1.271379 | CCTGTAGTTGGTGTTGGAGGG | 60.271 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
473 | 495 | 0.826715 | TGGGCTGATGCAGTAGACTC | 59.173 | 55.000 | 5.88 | 0.00 | 41.91 | 3.36 |
488 | 510 | 3.872511 | AGACTCTTCTGTGCATCTCAG | 57.127 | 47.619 | 0.00 | 0.00 | 0.00 | 3.35 |
517 | 539 | 0.448990 | GTTTATTTCGTCCCCGTGCC | 59.551 | 55.000 | 0.00 | 0.00 | 35.01 | 5.01 |
537 | 559 | 2.667481 | CCGTGCCATGCTAATTTTGTTG | 59.333 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
539 | 561 | 2.092524 | GTGCCATGCTAATTTTGTTGCG | 59.907 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
558 | 580 | 2.623889 | GCGTCCTACTGTCATATCCAGT | 59.376 | 50.000 | 9.03 | 9.03 | 44.90 | 4.00 |
559 | 581 | 3.551046 | GCGTCCTACTGTCATATCCAGTG | 60.551 | 52.174 | 12.71 | 5.30 | 42.85 | 3.66 |
565 | 587 | 3.955471 | ACTGTCATATCCAGTGGGTTTG | 58.045 | 45.455 | 9.92 | 8.04 | 41.47 | 2.93 |
566 | 588 | 3.330701 | ACTGTCATATCCAGTGGGTTTGT | 59.669 | 43.478 | 9.92 | 0.00 | 41.47 | 2.83 |
574 | 596 | 3.020984 | TCCAGTGGGTTTGTTTTCTGTC | 58.979 | 45.455 | 9.92 | 0.00 | 34.93 | 3.51 |
579 | 601 | 1.269051 | GGGTTTGTTTTCTGTCGCTGG | 60.269 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
580 | 602 | 1.404035 | GGTTTGTTTTCTGTCGCTGGT | 59.596 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
585 | 607 | 1.264288 | GTTTTCTGTCGCTGGTCTTGG | 59.736 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
600 | 622 | 4.040461 | TGGTCTTGGATTACATAGCTAGGC | 59.960 | 45.833 | 5.07 | 0.00 | 0.00 | 3.93 |
603 | 625 | 3.685139 | TGGATTACATAGCTAGGCTGC | 57.315 | 47.619 | 5.07 | 0.00 | 40.10 | 5.25 |
606 | 628 | 2.533266 | TTACATAGCTAGGCTGCAGC | 57.467 | 50.000 | 30.88 | 30.88 | 40.10 | 5.25 |
609 | 631 | 0.942962 | CATAGCTAGGCTGCAGCAAC | 59.057 | 55.000 | 37.63 | 22.68 | 44.36 | 4.17 |
614 | 636 | 1.734707 | GCTAGGCTGCAGCAACAATTG | 60.735 | 52.381 | 37.63 | 20.40 | 44.36 | 2.32 |
615 | 637 | 0.889994 | TAGGCTGCAGCAACAATTGG | 59.110 | 50.000 | 37.63 | 0.00 | 44.36 | 3.16 |
624 | 646 | 3.756933 | AGCAACAATTGGTGATTTGCT | 57.243 | 38.095 | 27.54 | 23.83 | 42.01 | 3.91 |
625 | 647 | 3.395639 | AGCAACAATTGGTGATTTGCTG | 58.604 | 40.909 | 27.54 | 0.00 | 43.96 | 4.41 |
626 | 648 | 2.096119 | GCAACAATTGGTGATTTGCTGC | 60.096 | 45.455 | 27.54 | 4.98 | 36.66 | 5.25 |
628 | 650 | 3.756933 | ACAATTGGTGATTTGCTGCTT | 57.243 | 38.095 | 10.83 | 0.00 | 0.00 | 3.91 |
629 | 651 | 3.395639 | ACAATTGGTGATTTGCTGCTTG | 58.604 | 40.909 | 10.83 | 0.00 | 0.00 | 4.01 |
630 | 652 | 3.181463 | ACAATTGGTGATTTGCTGCTTGT | 60.181 | 39.130 | 10.83 | 0.00 | 0.00 | 3.16 |
631 | 653 | 2.512485 | TTGGTGATTTGCTGCTTGTG | 57.488 | 45.000 | 0.00 | 0.00 | 0.00 | 3.33 |
632 | 654 | 0.675083 | TGGTGATTTGCTGCTTGTGG | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
633 | 655 | 0.675633 | GGTGATTTGCTGCTTGTGGT | 59.324 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
634 | 656 | 1.885887 | GGTGATTTGCTGCTTGTGGTA | 59.114 | 47.619 | 0.00 | 0.00 | 0.00 | 3.25 |
636 | 658 | 3.694072 | GGTGATTTGCTGCTTGTGGTATA | 59.306 | 43.478 | 0.00 | 0.00 | 0.00 | 1.47 |
637 | 659 | 4.201950 | GGTGATTTGCTGCTTGTGGTATAG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 1.31 |
638 | 660 | 3.378112 | TGATTTGCTGCTTGTGGTATAGC | 59.622 | 43.478 | 0.00 | 0.00 | 37.89 | 2.97 |
639 | 661 | 2.488204 | TTGCTGCTTGTGGTATAGCA | 57.512 | 45.000 | 0.00 | 0.00 | 44.58 | 3.49 |
641 | 663 | 3.836365 | TGCTGCTTGTGGTATAGCATA | 57.164 | 42.857 | 8.06 | 2.13 | 45.53 | 3.14 |
642 | 664 | 4.356405 | TGCTGCTTGTGGTATAGCATAT | 57.644 | 40.909 | 8.06 | 0.00 | 45.53 | 1.78 |
644 | 666 | 3.438087 | GCTGCTTGTGGTATAGCATATGG | 59.562 | 47.826 | 8.06 | 3.32 | 45.53 | 2.74 |
646 | 668 | 2.749621 | GCTTGTGGTATAGCATATGGGC | 59.250 | 50.000 | 8.06 | 6.91 | 37.35 | 5.36 |
647 | 669 | 7.779670 | CTGCTTGTGGTATAGCATATGGGCT | 62.780 | 48.000 | 8.06 | 0.00 | 45.53 | 5.19 |
648 | 670 | 3.701205 | TGTGGTATAGCATATGGGCTG | 57.299 | 47.619 | 8.06 | 0.00 | 45.44 | 4.85 |
655 | 696 | 1.906824 | GCATATGGGCTGGCATGCT | 60.907 | 57.895 | 18.92 | 0.00 | 40.46 | 3.79 |
663 | 704 | 1.453762 | GGCTGGCATGCTCTGGATTC | 61.454 | 60.000 | 18.92 | 0.00 | 0.00 | 2.52 |
669 | 710 | 0.107017 | CATGCTCTGGATTCGGGGTT | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 4.11 |
677 | 718 | 1.493022 | TGGATTCGGGGTTTAGATGGG | 59.507 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
678 | 719 | 1.493446 | GGATTCGGGGTTTAGATGGGT | 59.507 | 52.381 | 0.00 | 0.00 | 0.00 | 4.51 |
681 | 722 | 1.659022 | TCGGGGTTTAGATGGGTTGA | 58.341 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
682 | 723 | 2.201830 | TCGGGGTTTAGATGGGTTGAT | 58.798 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
687 | 728 | 3.356290 | GGTTTAGATGGGTTGATGCAGT | 58.644 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
688 | 729 | 4.523083 | GGTTTAGATGGGTTGATGCAGTA | 58.477 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
691 | 732 | 3.550437 | AGATGGGTTGATGCAGTAGAC | 57.450 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
694 | 735 | 1.977854 | TGGGTTGATGCAGTAGACTGT | 59.022 | 47.619 | 11.19 | 0.00 | 45.45 | 3.55 |
695 | 736 | 2.371841 | TGGGTTGATGCAGTAGACTGTT | 59.628 | 45.455 | 11.19 | 0.00 | 45.45 | 3.16 |
696 | 737 | 3.003480 | GGGTTGATGCAGTAGACTGTTC | 58.997 | 50.000 | 11.19 | 9.04 | 45.45 | 3.18 |
700 | 741 | 5.470368 | GTTGATGCAGTAGACTGTTCTGTA | 58.530 | 41.667 | 11.19 | 6.29 | 45.45 | 2.74 |
701 | 742 | 5.060662 | TGATGCAGTAGACTGTTCTGTAC | 57.939 | 43.478 | 11.19 | 0.00 | 45.45 | 2.90 |
702 | 743 | 4.522789 | TGATGCAGTAGACTGTTCTGTACA | 59.477 | 41.667 | 11.19 | 0.00 | 45.45 | 2.90 |
703 | 744 | 5.185828 | TGATGCAGTAGACTGTTCTGTACAT | 59.814 | 40.000 | 11.19 | 4.37 | 45.45 | 2.29 |
704 | 745 | 5.060662 | TGCAGTAGACTGTTCTGTACATC | 57.939 | 43.478 | 11.19 | 0.00 | 45.45 | 3.06 |
705 | 746 | 4.767409 | TGCAGTAGACTGTTCTGTACATCT | 59.233 | 41.667 | 11.19 | 0.00 | 45.45 | 2.90 |
706 | 747 | 5.106118 | TGCAGTAGACTGTTCTGTACATCTC | 60.106 | 44.000 | 11.19 | 0.00 | 45.45 | 2.75 |
707 | 748 | 5.106118 | GCAGTAGACTGTTCTGTACATCTCA | 60.106 | 44.000 | 11.19 | 0.00 | 45.45 | 3.27 |
708 | 749 | 6.570571 | GCAGTAGACTGTTCTGTACATCTCAA | 60.571 | 42.308 | 11.19 | 0.00 | 45.45 | 3.02 |
709 | 750 | 7.542890 | CAGTAGACTGTTCTGTACATCTCAAT | 58.457 | 38.462 | 0.00 | 0.00 | 39.09 | 2.57 |
710 | 751 | 8.031864 | CAGTAGACTGTTCTGTACATCTCAATT | 58.968 | 37.037 | 0.00 | 0.00 | 39.09 | 2.32 |
711 | 752 | 9.244292 | AGTAGACTGTTCTGTACATCTCAATTA | 57.756 | 33.333 | 0.00 | 0.00 | 35.85 | 1.40 |
712 | 753 | 9.291664 | GTAGACTGTTCTGTACATCTCAATTAC | 57.708 | 37.037 | 0.00 | 0.00 | 35.85 | 1.89 |
713 | 754 | 7.896811 | AGACTGTTCTGTACATCTCAATTACA | 58.103 | 34.615 | 0.00 | 0.00 | 35.85 | 2.41 |
714 | 755 | 8.367911 | AGACTGTTCTGTACATCTCAATTACAA | 58.632 | 33.333 | 0.00 | 0.00 | 35.85 | 2.41 |
715 | 756 | 8.311650 | ACTGTTCTGTACATCTCAATTACAAC | 57.688 | 34.615 | 0.00 | 0.00 | 35.85 | 3.32 |
716 | 757 | 8.150945 | ACTGTTCTGTACATCTCAATTACAACT | 58.849 | 33.333 | 0.00 | 0.00 | 35.85 | 3.16 |
717 | 758 | 8.902540 | TGTTCTGTACATCTCAATTACAACTT | 57.097 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
718 | 759 | 8.773645 | TGTTCTGTACATCTCAATTACAACTTG | 58.226 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
719 | 760 | 8.774586 | GTTCTGTACATCTCAATTACAACTTGT | 58.225 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
720 | 761 | 8.902540 | TCTGTACATCTCAATTACAACTTGTT | 57.097 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
721 | 762 | 9.337396 | TCTGTACATCTCAATTACAACTTGTTT | 57.663 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
729 | 770 | 9.872757 | TCTCAATTACAACTTGTTTATTTCGTC | 57.127 | 29.630 | 0.00 | 0.00 | 0.00 | 4.20 |
730 | 771 | 9.113876 | CTCAATTACAACTTGTTTATTTCGTCC | 57.886 | 33.333 | 0.00 | 0.00 | 0.00 | 4.79 |
731 | 772 | 8.077386 | TCAATTACAACTTGTTTATTTCGTCCC | 58.923 | 33.333 | 0.00 | 0.00 | 0.00 | 4.46 |
732 | 773 | 7.754851 | ATTACAACTTGTTTATTTCGTCCCT | 57.245 | 32.000 | 0.00 | 0.00 | 0.00 | 4.20 |
733 | 774 | 5.432885 | ACAACTTGTTTATTTCGTCCCTG | 57.567 | 39.130 | 0.00 | 0.00 | 0.00 | 4.45 |
734 | 775 | 4.885325 | ACAACTTGTTTATTTCGTCCCTGT | 59.115 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
735 | 776 | 5.212194 | CAACTTGTTTATTTCGTCCCTGTG | 58.788 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
736 | 777 | 3.252458 | ACTTGTTTATTTCGTCCCTGTGC | 59.748 | 43.478 | 0.00 | 0.00 | 0.00 | 4.57 |
737 | 778 | 3.134574 | TGTTTATTTCGTCCCTGTGCT | 57.865 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
749 | 790 | 2.105649 | TCCCTGTGCTGTGTCATGTTAA | 59.894 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
752 | 793 | 4.379813 | CCCTGTGCTGTGTCATGTTAATTC | 60.380 | 45.833 | 0.00 | 0.00 | 0.00 | 2.17 |
765 | 806 | 7.148255 | TGTCATGTTAATTCTGTTGCATCCTAC | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
768 | 809 | 5.123820 | TGTTAATTCTGTTGCATCCTACTGC | 59.876 | 40.000 | 0.00 | 0.00 | 42.62 | 4.40 |
772 | 813 | 2.771372 | TCTGTTGCATCCTACTGCCATA | 59.229 | 45.455 | 0.00 | 0.00 | 41.58 | 2.74 |
774 | 815 | 3.743521 | TGTTGCATCCTACTGCCATATC | 58.256 | 45.455 | 0.00 | 0.00 | 41.58 | 1.63 |
780 | 821 | 5.174395 | GCATCCTACTGCCATATCTTAGTG | 58.826 | 45.833 | 0.00 | 0.00 | 36.10 | 2.74 |
781 | 822 | 5.047021 | GCATCCTACTGCCATATCTTAGTGA | 60.047 | 44.000 | 0.00 | 0.00 | 36.10 | 3.41 |
791 | 832 | 7.988737 | TGCCATATCTTAGTGATTTTCTGTTG | 58.011 | 34.615 | 0.00 | 0.00 | 36.65 | 3.33 |
802 | 843 | 6.035843 | GTGATTTTCTGTTGCTGAACTTGAA | 58.964 | 36.000 | 0.00 | 0.00 | 32.79 | 2.69 |
803 | 844 | 6.698766 | GTGATTTTCTGTTGCTGAACTTGAAT | 59.301 | 34.615 | 0.00 | 0.00 | 32.79 | 2.57 |
804 | 845 | 7.223387 | GTGATTTTCTGTTGCTGAACTTGAATT | 59.777 | 33.333 | 0.00 | 0.00 | 32.79 | 2.17 |
806 | 847 | 7.985634 | TTTTCTGTTGCTGAACTTGAATTAC | 57.014 | 32.000 | 0.00 | 0.00 | 32.79 | 1.89 |
807 | 848 | 6.691754 | TTCTGTTGCTGAACTTGAATTACA | 57.308 | 33.333 | 0.00 | 0.00 | 32.79 | 2.41 |
808 | 849 | 6.882610 | TCTGTTGCTGAACTTGAATTACAT | 57.117 | 33.333 | 0.00 | 0.00 | 32.79 | 2.29 |
809 | 850 | 7.977789 | TCTGTTGCTGAACTTGAATTACATA | 57.022 | 32.000 | 0.00 | 0.00 | 32.79 | 2.29 |
810 | 851 | 8.032952 | TCTGTTGCTGAACTTGAATTACATAG | 57.967 | 34.615 | 0.00 | 0.00 | 32.79 | 2.23 |
812 | 853 | 8.165239 | TGTTGCTGAACTTGAATTACATAGTT | 57.835 | 30.769 | 0.00 | 0.00 | 34.86 | 2.24 |
814 | 855 | 7.144722 | TGCTGAACTTGAATTACATAGTTGG | 57.855 | 36.000 | 0.00 | 0.00 | 33.53 | 3.77 |
815 | 856 | 6.150976 | TGCTGAACTTGAATTACATAGTTGGG | 59.849 | 38.462 | 0.00 | 0.00 | 33.53 | 4.12 |
817 | 858 | 7.067494 | GCTGAACTTGAATTACATAGTTGGGAT | 59.933 | 37.037 | 0.00 | 0.00 | 33.53 | 3.85 |
818 | 859 | 8.279970 | TGAACTTGAATTACATAGTTGGGATG | 57.720 | 34.615 | 0.00 | 0.00 | 33.53 | 3.51 |
819 | 860 | 7.339212 | TGAACTTGAATTACATAGTTGGGATGG | 59.661 | 37.037 | 0.00 | 0.00 | 33.53 | 3.51 |
820 | 861 | 6.969043 | ACTTGAATTACATAGTTGGGATGGA | 58.031 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
821 | 862 | 7.056635 | ACTTGAATTACATAGTTGGGATGGAG | 58.943 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
823 | 864 | 7.684317 | TGAATTACATAGTTGGGATGGAGTA | 57.316 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
825 | 866 | 7.990886 | TGAATTACATAGTTGGGATGGAGTAAC | 59.009 | 37.037 | 0.00 | 0.00 | 0.00 | 2.50 |
828 | 879 | 6.327386 | ACATAGTTGGGATGGAGTAACAAT | 57.673 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
830 | 881 | 7.867921 | ACATAGTTGGGATGGAGTAACAATTA | 58.132 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
839 | 890 | 7.196331 | GGATGGAGTAACAATTAGTGATTTGC | 58.804 | 38.462 | 0.00 | 0.00 | 0.00 | 3.68 |
841 | 892 | 7.377766 | TGGAGTAACAATTAGTGATTTGCTC | 57.622 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
852 | 903 | 3.146066 | GTGATTTGCTCCTTGTGGTGTA | 58.854 | 45.455 | 0.00 | 0.00 | 34.23 | 2.90 |
866 | 917 | 5.941555 | TGTGGTGTATCATATGGTGTGTA | 57.058 | 39.130 | 2.13 | 0.00 | 0.00 | 2.90 |
867 | 918 | 6.493189 | TGTGGTGTATCATATGGTGTGTAT | 57.507 | 37.500 | 2.13 | 0.00 | 0.00 | 2.29 |
868 | 919 | 7.604657 | TGTGGTGTATCATATGGTGTGTATA | 57.395 | 36.000 | 2.13 | 0.00 | 0.00 | 1.47 |
879 | 930 | 2.563620 | TGGTGTGTATACGAAGCAAGGA | 59.436 | 45.455 | 6.95 | 0.00 | 0.00 | 3.36 |
892 | 943 | 6.636705 | ACGAAGCAAGGACTGTATTATTGTA | 58.363 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
932 | 1011 | 8.143193 | AGATTTATGATGTGTTTGTGCTGAAAA | 58.857 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
961 | 1040 | 2.472816 | GTGGTTTGCAATGTCCTGTTG | 58.527 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
971 | 1050 | 0.249868 | TGTCCTGTTGCTTCACTCCG | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1009 | 1088 | 2.094545 | GGGGTTTGATTGCAGATCACAC | 60.095 | 50.000 | 14.54 | 14.54 | 0.00 | 3.82 |
1096 | 1175 | 1.723288 | CCAGGAGGGAGAGGGTAATC | 58.277 | 60.000 | 0.00 | 0.00 | 40.01 | 1.75 |
1155 | 1234 | 5.163794 | CCCTGTATGTTCGTTGGATGTAAAC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 2.01 |
1247 | 1326 | 2.177531 | CATGTGCACGCTCTTGGC | 59.822 | 61.111 | 13.13 | 0.00 | 37.64 | 4.52 |
1291 | 1370 | 7.739498 | TGTCAACTGGTACCTAAATTTCTTC | 57.261 | 36.000 | 14.36 | 0.00 | 0.00 | 2.87 |
1295 | 1374 | 8.662255 | TCAACTGGTACCTAAATTTCTTCCTTA | 58.338 | 33.333 | 14.36 | 0.00 | 0.00 | 2.69 |
1300 | 1379 | 9.292195 | TGGTACCTAAATTTCTTCCTTACTTTG | 57.708 | 33.333 | 14.36 | 0.00 | 0.00 | 2.77 |
1313 | 1392 | 6.097915 | TCCTTACTTTGAGAACAGACGAAT | 57.902 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
1337 | 1416 | 0.881118 | CTGTGCTTATTGGTGCGGTT | 59.119 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1347 | 1426 | 3.363341 | TTGGTGCGGTTGATTTCTTTC | 57.637 | 42.857 | 0.00 | 0.00 | 0.00 | 2.62 |
1348 | 1427 | 2.302260 | TGGTGCGGTTGATTTCTTTCA | 58.698 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
1442 | 1521 | 1.421268 | TGGAAATGTGACAGCTGGAGT | 59.579 | 47.619 | 19.93 | 0.00 | 0.00 | 3.85 |
1454 | 1533 | 2.026822 | CAGCTGGAGTGGATGGTACTTT | 60.027 | 50.000 | 5.57 | 0.00 | 0.00 | 2.66 |
1539 | 1618 | 5.172687 | TCCAAATCAGGTAGCATTGTGTA | 57.827 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
1569 | 1648 | 1.299541 | CCGCACTGACAGTTCACTTT | 58.700 | 50.000 | 5.04 | 0.00 | 0.00 | 2.66 |
1590 | 1669 | 0.976641 | TGTCTCCCAGGTGTTGCTAG | 59.023 | 55.000 | 0.00 | 0.00 | 0.00 | 3.42 |
1598 | 1677 | 3.544684 | CCAGGTGTTGCTAGCATCAATA | 58.455 | 45.455 | 25.99 | 6.00 | 0.00 | 1.90 |
1859 | 2022 | 3.794717 | TGTGCATGCTTGTTTGTCAAAT | 58.205 | 36.364 | 20.33 | 0.00 | 35.48 | 2.32 |
1978 | 2141 | 2.040412 | AGTAAGTTTGAAGAGCCTGGGG | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
2108 | 2277 | 4.112634 | GGTGTGTTTTCTTGCTTTTCTCC | 58.887 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
2138 | 2307 | 7.287061 | TCCACATTTATATCTTGAAATCCGGT | 58.713 | 34.615 | 0.00 | 0.00 | 0.00 | 5.28 |
2139 | 2308 | 8.433599 | TCCACATTTATATCTTGAAATCCGGTA | 58.566 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
2182 | 2351 | 5.818136 | TTGGCTTGCTTGTCTTATATGAC | 57.182 | 39.130 | 10.98 | 10.98 | 37.47 | 3.06 |
2237 | 2406 | 3.309410 | GGGAAAAATGCACAACACAAGTG | 59.691 | 43.478 | 0.00 | 0.00 | 39.92 | 3.16 |
2261 | 2430 | 2.983791 | GCATTTGGCATGCAGGGT | 59.016 | 55.556 | 21.36 | 0.00 | 44.00 | 4.34 |
2262 | 2431 | 2.200989 | GCATTTGGCATGCAGGGTA | 58.799 | 52.632 | 21.36 | 0.00 | 44.00 | 3.69 |
2263 | 2432 | 0.179103 | GCATTTGGCATGCAGGGTAC | 60.179 | 55.000 | 21.36 | 0.64 | 44.00 | 3.34 |
2264 | 2433 | 1.477553 | CATTTGGCATGCAGGGTACT | 58.522 | 50.000 | 21.36 | 0.00 | 0.00 | 2.73 |
2265 | 2434 | 1.406539 | CATTTGGCATGCAGGGTACTC | 59.593 | 52.381 | 21.36 | 0.00 | 0.00 | 2.59 |
2266 | 2435 | 0.323360 | TTTGGCATGCAGGGTACTCC | 60.323 | 55.000 | 21.36 | 0.00 | 0.00 | 3.85 |
2276 | 2445 | 2.279408 | GGTACTCCCTCCGCTCCT | 59.721 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
2277 | 2446 | 1.535685 | GGTACTCCCTCCGCTCCTA | 59.464 | 63.158 | 0.00 | 0.00 | 0.00 | 2.94 |
2278 | 2447 | 0.106318 | GGTACTCCCTCCGCTCCTAA | 60.106 | 60.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2279 | 2448 | 1.687368 | GGTACTCCCTCCGCTCCTAAA | 60.687 | 57.143 | 0.00 | 0.00 | 0.00 | 1.85 |
2280 | 2449 | 2.317973 | GTACTCCCTCCGCTCCTAAAT | 58.682 | 52.381 | 0.00 | 0.00 | 0.00 | 1.40 |
2281 | 2450 | 2.769602 | ACTCCCTCCGCTCCTAAATA | 57.230 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2282 | 2451 | 3.261818 | ACTCCCTCCGCTCCTAAATAT | 57.738 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
2283 | 2452 | 4.399483 | ACTCCCTCCGCTCCTAAATATA | 57.601 | 45.455 | 0.00 | 0.00 | 0.00 | 0.86 |
2284 | 2453 | 4.748701 | ACTCCCTCCGCTCCTAAATATAA | 58.251 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
2285 | 2454 | 4.773149 | ACTCCCTCCGCTCCTAAATATAAG | 59.227 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
2286 | 2455 | 4.748701 | TCCCTCCGCTCCTAAATATAAGT | 58.251 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2287 | 2456 | 4.771054 | TCCCTCCGCTCCTAAATATAAGTC | 59.229 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
2288 | 2457 | 4.773149 | CCCTCCGCTCCTAAATATAAGTCT | 59.227 | 45.833 | 0.00 | 0.00 | 0.00 | 3.24 |
2289 | 2458 | 5.246429 | CCCTCCGCTCCTAAATATAAGTCTT | 59.754 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2290 | 2459 | 6.239629 | CCCTCCGCTCCTAAATATAAGTCTTT | 60.240 | 42.308 | 0.00 | 0.00 | 0.00 | 2.52 |
2291 | 2460 | 7.217906 | CCTCCGCTCCTAAATATAAGTCTTTT | 58.782 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
2292 | 2461 | 7.715686 | CCTCCGCTCCTAAATATAAGTCTTTTT | 59.284 | 37.037 | 0.00 | 0.00 | 0.00 | 1.94 |
2293 | 2462 | 9.760077 | CTCCGCTCCTAAATATAAGTCTTTTTA | 57.240 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
2294 | 2463 | 9.760077 | TCCGCTCCTAAATATAAGTCTTTTTAG | 57.240 | 33.333 | 7.75 | 7.75 | 33.47 | 1.85 |
2295 | 2464 | 9.760077 | CCGCTCCTAAATATAAGTCTTTTTAGA | 57.240 | 33.333 | 13.43 | 3.76 | 34.90 | 2.10 |
2319 | 2488 | 9.314321 | AGAGATTTCAATACAAACTACATACGG | 57.686 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
2320 | 2489 | 9.309516 | GAGATTTCAATACAAACTACATACGGA | 57.690 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
2321 | 2490 | 9.832445 | AGATTTCAATACAAACTACATACGGAT | 57.168 | 29.630 | 0.00 | 0.00 | 0.00 | 4.18 |
2322 | 2491 | 9.864034 | GATTTCAATACAAACTACATACGGATG | 57.136 | 33.333 | 5.94 | 5.94 | 39.16 | 3.51 |
2324 | 2493 | 9.872721 | TTTCAATACAAACTACATACGGATGTA | 57.127 | 29.630 | 19.32 | 19.32 | 44.77 | 2.29 |
2364 | 2533 | 6.734104 | AGTGTAGATTCACTCATTTTGCTC | 57.266 | 37.500 | 0.00 | 0.00 | 44.07 | 4.26 |
2365 | 2534 | 5.645497 | AGTGTAGATTCACTCATTTTGCTCC | 59.355 | 40.000 | 0.00 | 0.00 | 44.07 | 4.70 |
2366 | 2535 | 4.631377 | TGTAGATTCACTCATTTTGCTCCG | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
2367 | 2536 | 3.679389 | AGATTCACTCATTTTGCTCCGT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
2368 | 2537 | 4.832248 | AGATTCACTCATTTTGCTCCGTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
2369 | 2538 | 5.431765 | AGATTCACTCATTTTGCTCCGTAT | 58.568 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
2370 | 2539 | 4.944962 | TTCACTCATTTTGCTCCGTATG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 2.39 |
2371 | 2540 | 3.937814 | TCACTCATTTTGCTCCGTATGT | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
2372 | 2541 | 5.079689 | TCACTCATTTTGCTCCGTATGTA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
2373 | 2542 | 5.109210 | TCACTCATTTTGCTCCGTATGTAG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
2374 | 2543 | 3.871594 | ACTCATTTTGCTCCGTATGTAGC | 59.128 | 43.478 | 0.00 | 0.00 | 39.25 | 3.58 |
2375 | 2544 | 3.202906 | TCATTTTGCTCCGTATGTAGCC | 58.797 | 45.455 | 0.00 | 0.00 | 37.97 | 3.93 |
2376 | 2545 | 3.118408 | TCATTTTGCTCCGTATGTAGCCT | 60.118 | 43.478 | 0.00 | 0.00 | 37.97 | 4.58 |
2377 | 2546 | 2.596904 | TTTGCTCCGTATGTAGCCTC | 57.403 | 50.000 | 0.00 | 0.00 | 37.97 | 4.70 |
2378 | 2547 | 1.776662 | TTGCTCCGTATGTAGCCTCT | 58.223 | 50.000 | 0.00 | 0.00 | 37.97 | 3.69 |
2379 | 2548 | 1.776662 | TGCTCCGTATGTAGCCTCTT | 58.223 | 50.000 | 0.00 | 0.00 | 37.97 | 2.85 |
2380 | 2549 | 2.940158 | TGCTCCGTATGTAGCCTCTTA | 58.060 | 47.619 | 0.00 | 0.00 | 37.97 | 2.10 |
2381 | 2550 | 3.497332 | TGCTCCGTATGTAGCCTCTTAT | 58.503 | 45.455 | 0.00 | 0.00 | 37.97 | 1.73 |
2382 | 2551 | 3.895656 | TGCTCCGTATGTAGCCTCTTATT | 59.104 | 43.478 | 0.00 | 0.00 | 37.97 | 1.40 |
2383 | 2552 | 4.238514 | GCTCCGTATGTAGCCTCTTATTG | 58.761 | 47.826 | 0.00 | 0.00 | 32.40 | 1.90 |
2384 | 2553 | 4.810790 | CTCCGTATGTAGCCTCTTATTGG | 58.189 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
2385 | 2554 | 4.476297 | TCCGTATGTAGCCTCTTATTGGA | 58.524 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
2386 | 2555 | 4.897076 | TCCGTATGTAGCCTCTTATTGGAA | 59.103 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
2387 | 2556 | 5.542635 | TCCGTATGTAGCCTCTTATTGGAAT | 59.457 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2388 | 2557 | 5.869888 | CCGTATGTAGCCTCTTATTGGAATC | 59.130 | 44.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2389 | 2558 | 6.295349 | CCGTATGTAGCCTCTTATTGGAATCT | 60.295 | 42.308 | 0.00 | 0.00 | 0.00 | 2.40 |
2390 | 2559 | 6.809196 | CGTATGTAGCCTCTTATTGGAATCTC | 59.191 | 42.308 | 0.00 | 0.00 | 0.00 | 2.75 |
2391 | 2560 | 7.309499 | CGTATGTAGCCTCTTATTGGAATCTCT | 60.309 | 40.741 | 0.00 | 0.00 | 0.00 | 3.10 |
2392 | 2561 | 9.026121 | GTATGTAGCCTCTTATTGGAATCTCTA | 57.974 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2393 | 2562 | 7.914427 | TGTAGCCTCTTATTGGAATCTCTAA | 57.086 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2394 | 2563 | 8.319057 | TGTAGCCTCTTATTGGAATCTCTAAA | 57.681 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
2395 | 2564 | 8.768397 | TGTAGCCTCTTATTGGAATCTCTAAAA | 58.232 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
2396 | 2565 | 9.614792 | GTAGCCTCTTATTGGAATCTCTAAAAA | 57.385 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
2397 | 2566 | 8.744568 | AGCCTCTTATTGGAATCTCTAAAAAG | 57.255 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
2398 | 2567 | 7.777440 | AGCCTCTTATTGGAATCTCTAAAAAGG | 59.223 | 37.037 | 0.00 | 0.00 | 0.00 | 3.11 |
2399 | 2568 | 7.469318 | GCCTCTTATTGGAATCTCTAAAAAGGC | 60.469 | 40.741 | 0.00 | 0.00 | 0.00 | 4.35 |
2400 | 2569 | 7.777440 | CCTCTTATTGGAATCTCTAAAAAGGCT | 59.223 | 37.037 | 0.00 | 0.00 | 0.00 | 4.58 |
2401 | 2570 | 9.183368 | CTCTTATTGGAATCTCTAAAAAGGCTT | 57.817 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
2415 | 2584 | 9.333724 | TCTAAAAAGGCTTATATTTAGGAACGG | 57.666 | 33.333 | 21.19 | 4.97 | 36.48 | 4.44 |
2416 | 2585 | 9.333724 | CTAAAAAGGCTTATATTTAGGAACGGA | 57.666 | 33.333 | 16.77 | 0.00 | 33.69 | 4.69 |
2417 | 2586 | 7.803279 | AAAAGGCTTATATTTAGGAACGGAG | 57.197 | 36.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2418 | 2587 | 5.485209 | AGGCTTATATTTAGGAACGGAGG | 57.515 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2419 | 2588 | 4.286291 | AGGCTTATATTTAGGAACGGAGGG | 59.714 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2420 | 2589 | 4.285260 | GGCTTATATTTAGGAACGGAGGGA | 59.715 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
2421 | 2590 | 5.480205 | GCTTATATTTAGGAACGGAGGGAG | 58.520 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2478 | 2647 | 4.702131 | CCTGAGTATTTGCTTGGCTTAGTT | 59.298 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2857 | 3026 | 8.039538 | TCATCTGATATTAGCTAGCCAATCTTG | 58.960 | 37.037 | 11.83 | 8.87 | 0.00 | 3.02 |
2858 | 3027 | 7.308450 | TCTGATATTAGCTAGCCAATCTTGT | 57.692 | 36.000 | 11.83 | 0.00 | 0.00 | 3.16 |
2859 | 3028 | 7.382110 | TCTGATATTAGCTAGCCAATCTTGTC | 58.618 | 38.462 | 11.83 | 7.39 | 0.00 | 3.18 |
2860 | 3029 | 7.234371 | TCTGATATTAGCTAGCCAATCTTGTCT | 59.766 | 37.037 | 11.83 | 0.00 | 0.00 | 3.41 |
2892 | 3073 | 7.880160 | AAATTCACCTGCTTGCTACATATAA | 57.120 | 32.000 | 0.00 | 0.00 | 0.00 | 0.98 |
2946 | 3127 | 4.874966 | AGCTGCTCATTCTATTCAGAACAC | 59.125 | 41.667 | 0.00 | 0.00 | 43.50 | 3.32 |
2956 | 3137 | 6.109156 | TCTATTCAGAACACAGCCTGTTTA | 57.891 | 37.500 | 0.00 | 0.00 | 43.60 | 2.01 |
3062 | 3243 | 2.186160 | CACTGGAAACGCTGGTGCA | 61.186 | 57.895 | 0.00 | 0.00 | 39.64 | 4.57 |
3087 | 3268 | 4.799428 | GTGTTGCTTGCGGTAAGTTAAAAA | 59.201 | 37.500 | 7.66 | 0.00 | 38.70 | 1.94 |
3097 | 3278 | 6.201234 | TGCGGTAAGTTAAAAATTTCTTTGGC | 59.799 | 34.615 | 0.00 | 0.00 | 0.00 | 4.52 |
3209 | 3392 | 5.964477 | TCTAGTGGATTCATAGAAACCCTGT | 59.036 | 40.000 | 3.98 | 0.00 | 0.00 | 4.00 |
3411 | 3594 | 4.245660 | CAGTCGTGTCAATTCCTATGTGT | 58.754 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
3428 | 3611 | 8.188799 | TCCTATGTGTTACTCTGAACTTTATCG | 58.811 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
3448 | 3631 | 2.799562 | CGCTGTCATTTGGCTATCGAGA | 60.800 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
3451 | 3634 | 4.375272 | CTGTCATTTGGCTATCGAGATGT | 58.625 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
3500 | 3694 | 2.299013 | TGTGGATCTGTTGTTCGCTACT | 59.701 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
3511 | 3705 | 1.015109 | TTCGCTACTAGCTCTGGACG | 58.985 | 55.000 | 6.50 | 0.00 | 39.60 | 4.79 |
3513 | 3707 | 0.028242 | CGCTACTAGCTCTGGACGTG | 59.972 | 60.000 | 6.50 | 0.00 | 39.60 | 4.49 |
3547 | 3822 | 3.634448 | CGAGAGAGGTATCCATGTGTTCT | 59.366 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
3552 | 3827 | 2.239654 | AGGTATCCATGTGTTCTGGTGG | 59.760 | 50.000 | 0.00 | 0.00 | 35.19 | 4.61 |
3554 | 3829 | 2.978156 | ATCCATGTGTTCTGGTGGTT | 57.022 | 45.000 | 0.00 | 0.00 | 35.19 | 3.67 |
3602 | 3877 | 7.094377 | GCTACTTTTATCTGTTTGGAATGGTGA | 60.094 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
3806 | 4092 | 0.663153 | GCCAACTTGTTCGTGCTCTT | 59.337 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3900 | 4189 | 2.657237 | CAGCCCGTTCTTCCTCGT | 59.343 | 61.111 | 0.00 | 0.00 | 0.00 | 4.18 |
3968 | 4257 | 0.605589 | CTCGCTCTGACAACCCTTCT | 59.394 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
4031 | 4320 | 0.737367 | CATCGATATGGGACGCGCAT | 60.737 | 55.000 | 5.73 | 4.19 | 40.13 | 4.73 |
4166 | 4481 | 3.571401 | ACTGTTGCATTTTTGGGAGAGAG | 59.429 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
4167 | 4482 | 2.892852 | TGTTGCATTTTTGGGAGAGAGG | 59.107 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
4170 | 4485 | 1.005924 | GCATTTTTGGGAGAGAGGGGA | 59.994 | 52.381 | 0.00 | 0.00 | 0.00 | 4.81 |
4247 | 4563 | 1.760613 | AGTAAAGATTGATCCCGCCGA | 59.239 | 47.619 | 0.00 | 0.00 | 0.00 | 5.54 |
4254 | 4570 | 2.455674 | TTGATCCCGCCGAGATAATG | 57.544 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
4270 | 4586 | 5.440610 | AGATAATGTTTTTCCTGATCCGCT | 58.559 | 37.500 | 0.00 | 0.00 | 0.00 | 5.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
100 | 113 | 1.528309 | GCGGAGGAGAGGAGAGGAG | 60.528 | 68.421 | 0.00 | 0.00 | 0.00 | 3.69 |
101 | 114 | 2.598467 | GCGGAGGAGAGGAGAGGA | 59.402 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
102 | 115 | 2.904866 | CGCGGAGGAGAGGAGAGG | 60.905 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
103 | 116 | 3.591835 | GCGCGGAGGAGAGGAGAG | 61.592 | 72.222 | 8.83 | 0.00 | 0.00 | 3.20 |
104 | 117 | 3.723097 | ATGCGCGGAGGAGAGGAGA | 62.723 | 63.158 | 8.83 | 0.00 | 0.00 | 3.71 |
197 | 217 | 2.100631 | GGTCGTGGTTGCAGATCGG | 61.101 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
261 | 281 | 1.881252 | CGGCCGAATCTAACCACCG | 60.881 | 63.158 | 24.07 | 0.00 | 0.00 | 4.94 |
262 | 282 | 2.178235 | GCGGCCGAATCTAACCACC | 61.178 | 63.158 | 33.48 | 1.41 | 0.00 | 4.61 |
264 | 284 | 2.202824 | CGCGGCCGAATCTAACCA | 60.203 | 61.111 | 33.48 | 0.00 | 36.29 | 3.67 |
293 | 313 | 1.002134 | AAACACAGGCAGATCGGGG | 60.002 | 57.895 | 0.00 | 0.00 | 0.00 | 5.73 |
304 | 326 | 3.623060 | AGCATATAACTCCGCAAACACAG | 59.377 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
315 | 337 | 2.797156 | CACGCACAGGAGCATATAACTC | 59.203 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
322 | 344 | 2.046892 | GACCACGCACAGGAGCAT | 60.047 | 61.111 | 0.00 | 0.00 | 0.00 | 3.79 |
333 | 355 | 2.503375 | GACTACCACGCGACCACG | 60.503 | 66.667 | 15.93 | 0.00 | 42.93 | 4.94 |
334 | 356 | 2.503375 | CGACTACCACGCGACCAC | 60.503 | 66.667 | 15.93 | 0.00 | 0.00 | 4.16 |
335 | 357 | 3.740397 | CCGACTACCACGCGACCA | 61.740 | 66.667 | 15.93 | 0.00 | 0.00 | 4.02 |
336 | 358 | 3.273080 | AACCGACTACCACGCGACC | 62.273 | 63.158 | 15.93 | 0.00 | 0.00 | 4.79 |
337 | 359 | 2.084681 | CAACCGACTACCACGCGAC | 61.085 | 63.158 | 15.93 | 0.00 | 0.00 | 5.19 |
338 | 360 | 2.256158 | CAACCGACTACCACGCGA | 59.744 | 61.111 | 15.93 | 0.00 | 0.00 | 5.87 |
339 | 361 | 2.807895 | CCAACCGACTACCACGCG | 60.808 | 66.667 | 3.53 | 3.53 | 0.00 | 6.01 |
403 | 425 | 0.318614 | CACACCCAAAATCACCGCAC | 60.319 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
473 | 495 | 5.477510 | AGTTCTAACTGAGATGCACAGAAG | 58.522 | 41.667 | 9.59 | 6.68 | 37.98 | 2.85 |
488 | 510 | 6.605849 | GGGGACGAAATAAACAAGTTCTAAC | 58.394 | 40.000 | 0.00 | 0.00 | 29.89 | 2.34 |
517 | 539 | 2.092524 | GCAACAAAATTAGCATGGCACG | 59.907 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
521 | 543 | 2.923020 | GGACGCAACAAAATTAGCATGG | 59.077 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
526 | 548 | 5.178623 | TGACAGTAGGACGCAACAAAATTAG | 59.821 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
537 | 559 | 2.623889 | ACTGGATATGACAGTAGGACGC | 59.376 | 50.000 | 7.66 | 0.00 | 46.62 | 5.19 |
539 | 561 | 3.322254 | CCCACTGGATATGACAGTAGGAC | 59.678 | 52.174 | 13.17 | 0.00 | 46.44 | 3.85 |
558 | 580 | 1.403679 | CAGCGACAGAAAACAAACCCA | 59.596 | 47.619 | 0.00 | 0.00 | 0.00 | 4.51 |
559 | 581 | 1.269051 | CCAGCGACAGAAAACAAACCC | 60.269 | 52.381 | 0.00 | 0.00 | 0.00 | 4.11 |
565 | 587 | 1.264288 | CCAAGACCAGCGACAGAAAAC | 59.736 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
566 | 588 | 1.140052 | TCCAAGACCAGCGACAGAAAA | 59.860 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
574 | 596 | 2.802816 | GCTATGTAATCCAAGACCAGCG | 59.197 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
579 | 601 | 5.233988 | CAGCCTAGCTATGTAATCCAAGAC | 58.766 | 45.833 | 0.00 | 0.00 | 36.40 | 3.01 |
580 | 602 | 4.262635 | GCAGCCTAGCTATGTAATCCAAGA | 60.263 | 45.833 | 0.00 | 0.00 | 36.40 | 3.02 |
585 | 607 | 2.999355 | GCTGCAGCCTAGCTATGTAATC | 59.001 | 50.000 | 28.76 | 0.00 | 36.40 | 1.75 |
600 | 622 | 2.736144 | ATCACCAATTGTTGCTGCAG | 57.264 | 45.000 | 10.11 | 10.11 | 0.00 | 4.41 |
603 | 625 | 3.185594 | CAGCAAATCACCAATTGTTGCTG | 59.814 | 43.478 | 30.23 | 30.23 | 40.63 | 4.41 |
606 | 628 | 3.395639 | AGCAGCAAATCACCAATTGTTG | 58.604 | 40.909 | 4.43 | 0.00 | 39.73 | 3.33 |
609 | 631 | 3.185594 | CACAAGCAGCAAATCACCAATTG | 59.814 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
614 | 636 | 0.675633 | ACCACAAGCAGCAAATCACC | 59.324 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
615 | 637 | 3.855689 | ATACCACAAGCAGCAAATCAC | 57.144 | 42.857 | 0.00 | 0.00 | 0.00 | 3.06 |
618 | 640 | 3.355378 | TGCTATACCACAAGCAGCAAAT | 58.645 | 40.909 | 0.00 | 0.00 | 43.56 | 2.32 |
619 | 641 | 2.789213 | TGCTATACCACAAGCAGCAAA | 58.211 | 42.857 | 0.00 | 0.00 | 43.56 | 3.68 |
620 | 642 | 2.488204 | TGCTATACCACAAGCAGCAA | 57.512 | 45.000 | 0.00 | 0.00 | 43.56 | 3.91 |
625 | 647 | 2.749621 | GCCCATATGCTATACCACAAGC | 59.250 | 50.000 | 0.00 | 0.00 | 39.25 | 4.01 |
626 | 648 | 4.005650 | CAGCCCATATGCTATACCACAAG | 58.994 | 47.826 | 0.00 | 0.00 | 40.32 | 3.16 |
628 | 650 | 2.305635 | CCAGCCCATATGCTATACCACA | 59.694 | 50.000 | 0.00 | 0.00 | 40.32 | 4.17 |
629 | 651 | 2.941415 | GCCAGCCCATATGCTATACCAC | 60.941 | 54.545 | 0.00 | 0.00 | 40.32 | 4.16 |
630 | 652 | 1.281867 | GCCAGCCCATATGCTATACCA | 59.718 | 52.381 | 0.00 | 0.00 | 40.32 | 3.25 |
631 | 653 | 1.281867 | TGCCAGCCCATATGCTATACC | 59.718 | 52.381 | 0.00 | 0.00 | 40.32 | 2.73 |
632 | 654 | 2.787473 | TGCCAGCCCATATGCTATAC | 57.213 | 50.000 | 0.00 | 0.00 | 40.32 | 1.47 |
633 | 655 | 2.684630 | GCATGCCAGCCCATATGCTATA | 60.685 | 50.000 | 6.36 | 0.00 | 40.32 | 1.31 |
634 | 656 | 1.958549 | GCATGCCAGCCCATATGCTAT | 60.959 | 52.381 | 6.36 | 0.00 | 40.32 | 2.97 |
636 | 658 | 1.906824 | GCATGCCAGCCCATATGCT | 60.907 | 57.895 | 6.36 | 0.00 | 44.00 | 3.79 |
637 | 659 | 1.874345 | GAGCATGCCAGCCCATATGC | 61.874 | 60.000 | 15.66 | 4.90 | 44.63 | 3.14 |
638 | 660 | 0.251209 | AGAGCATGCCAGCCCATATG | 60.251 | 55.000 | 15.66 | 0.00 | 34.23 | 1.78 |
639 | 661 | 0.251209 | CAGAGCATGCCAGCCCATAT | 60.251 | 55.000 | 15.66 | 0.00 | 34.23 | 1.78 |
641 | 663 | 2.123854 | CAGAGCATGCCAGCCCAT | 60.124 | 61.111 | 15.66 | 0.00 | 34.23 | 4.00 |
642 | 664 | 4.435970 | CCAGAGCATGCCAGCCCA | 62.436 | 66.667 | 15.66 | 0.00 | 34.23 | 5.36 |
644 | 666 | 1.453762 | GAATCCAGAGCATGCCAGCC | 61.454 | 60.000 | 15.66 | 1.19 | 34.23 | 4.85 |
646 | 668 | 1.164662 | CCGAATCCAGAGCATGCCAG | 61.165 | 60.000 | 15.66 | 4.21 | 0.00 | 4.85 |
647 | 669 | 1.153107 | CCGAATCCAGAGCATGCCA | 60.153 | 57.895 | 15.66 | 0.00 | 0.00 | 4.92 |
648 | 670 | 1.895707 | CCCGAATCCAGAGCATGCC | 60.896 | 63.158 | 15.66 | 6.03 | 0.00 | 4.40 |
655 | 696 | 2.438021 | CCATCTAAACCCCGAATCCAGA | 59.562 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
663 | 704 | 2.297701 | CATCAACCCATCTAAACCCCG | 58.702 | 52.381 | 0.00 | 0.00 | 0.00 | 5.73 |
669 | 710 | 4.716784 | AGTCTACTGCATCAACCCATCTAA | 59.283 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
687 | 728 | 9.020731 | TGTAATTGAGATGTACAGAACAGTCTA | 57.979 | 33.333 | 0.33 | 0.00 | 42.70 | 2.59 |
688 | 729 | 7.896811 | TGTAATTGAGATGTACAGAACAGTCT | 58.103 | 34.615 | 0.33 | 0.00 | 42.70 | 3.24 |
691 | 732 | 8.539770 | AGTTGTAATTGAGATGTACAGAACAG | 57.460 | 34.615 | 0.33 | 0.00 | 42.70 | 3.16 |
694 | 735 | 8.902540 | ACAAGTTGTAATTGAGATGTACAGAA | 57.097 | 30.769 | 6.75 | 0.00 | 0.00 | 3.02 |
695 | 736 | 8.902540 | AACAAGTTGTAATTGAGATGTACAGA | 57.097 | 30.769 | 9.37 | 0.00 | 0.00 | 3.41 |
703 | 744 | 9.872757 | GACGAAATAAACAAGTTGTAATTGAGA | 57.127 | 29.630 | 9.37 | 0.00 | 0.00 | 3.27 |
704 | 745 | 9.113876 | GGACGAAATAAACAAGTTGTAATTGAG | 57.886 | 33.333 | 9.37 | 11.48 | 0.00 | 3.02 |
705 | 746 | 8.077386 | GGGACGAAATAAACAAGTTGTAATTGA | 58.923 | 33.333 | 9.37 | 0.00 | 0.00 | 2.57 |
706 | 747 | 8.079809 | AGGGACGAAATAAACAAGTTGTAATTG | 58.920 | 33.333 | 9.37 | 4.77 | 0.00 | 2.32 |
707 | 748 | 8.079809 | CAGGGACGAAATAAACAAGTTGTAATT | 58.920 | 33.333 | 9.37 | 9.50 | 0.00 | 1.40 |
708 | 749 | 7.229907 | ACAGGGACGAAATAAACAAGTTGTAAT | 59.770 | 33.333 | 9.37 | 3.47 | 0.00 | 1.89 |
709 | 750 | 6.543100 | ACAGGGACGAAATAAACAAGTTGTAA | 59.457 | 34.615 | 9.37 | 0.91 | 0.00 | 2.41 |
710 | 751 | 6.017770 | CACAGGGACGAAATAAACAAGTTGTA | 60.018 | 38.462 | 9.37 | 0.00 | 0.00 | 2.41 |
711 | 752 | 4.885325 | ACAGGGACGAAATAAACAAGTTGT | 59.115 | 37.500 | 1.64 | 1.64 | 0.00 | 3.32 |
712 | 753 | 5.212194 | CACAGGGACGAAATAAACAAGTTG | 58.788 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
713 | 754 | 4.261447 | GCACAGGGACGAAATAAACAAGTT | 60.261 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
714 | 755 | 3.252458 | GCACAGGGACGAAATAAACAAGT | 59.748 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
715 | 756 | 3.502211 | AGCACAGGGACGAAATAAACAAG | 59.498 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
716 | 757 | 3.252215 | CAGCACAGGGACGAAATAAACAA | 59.748 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
717 | 758 | 2.811431 | CAGCACAGGGACGAAATAAACA | 59.189 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
718 | 759 | 2.812011 | ACAGCACAGGGACGAAATAAAC | 59.188 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
719 | 760 | 2.811431 | CACAGCACAGGGACGAAATAAA | 59.189 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
720 | 761 | 2.224426 | ACACAGCACAGGGACGAAATAA | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
721 | 762 | 1.346395 | ACACAGCACAGGGACGAAATA | 59.654 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
722 | 763 | 0.108585 | ACACAGCACAGGGACGAAAT | 59.891 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
723 | 764 | 0.531974 | GACACAGCACAGGGACGAAA | 60.532 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
724 | 765 | 1.069090 | GACACAGCACAGGGACGAA | 59.931 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
725 | 766 | 1.471829 | ATGACACAGCACAGGGACGA | 61.472 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
726 | 767 | 1.004560 | ATGACACAGCACAGGGACG | 60.005 | 57.895 | 0.00 | 0.00 | 0.00 | 4.79 |
727 | 768 | 0.250467 | ACATGACACAGCACAGGGAC | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
728 | 769 | 0.473755 | AACATGACACAGCACAGGGA | 59.526 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
729 | 770 | 2.183478 | TAACATGACACAGCACAGGG | 57.817 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
730 | 771 | 4.456911 | AGAATTAACATGACACAGCACAGG | 59.543 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
731 | 772 | 5.049198 | ACAGAATTAACATGACACAGCACAG | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 3.66 |
732 | 773 | 4.821260 | ACAGAATTAACATGACACAGCACA | 59.179 | 37.500 | 0.00 | 0.00 | 0.00 | 4.57 |
733 | 774 | 5.362556 | ACAGAATTAACATGACACAGCAC | 57.637 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
734 | 775 | 5.761003 | CAACAGAATTAACATGACACAGCA | 58.239 | 37.500 | 0.00 | 0.00 | 0.00 | 4.41 |
735 | 776 | 4.618489 | GCAACAGAATTAACATGACACAGC | 59.382 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
736 | 777 | 5.761003 | TGCAACAGAATTAACATGACACAG | 58.239 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
737 | 778 | 5.764487 | TGCAACAGAATTAACATGACACA | 57.236 | 34.783 | 0.00 | 0.00 | 0.00 | 3.72 |
765 | 806 | 7.798596 | ACAGAAAATCACTAAGATATGGCAG | 57.201 | 36.000 | 0.00 | 0.00 | 35.39 | 4.85 |
768 | 809 | 8.127327 | CAGCAACAGAAAATCACTAAGATATGG | 58.873 | 37.037 | 0.00 | 0.00 | 35.39 | 2.74 |
772 | 813 | 7.446625 | AGTTCAGCAACAGAAAATCACTAAGAT | 59.553 | 33.333 | 0.00 | 0.00 | 34.95 | 2.40 |
774 | 815 | 6.963796 | AGTTCAGCAACAGAAAATCACTAAG | 58.036 | 36.000 | 0.00 | 0.00 | 34.60 | 2.18 |
780 | 821 | 7.704789 | AATTCAAGTTCAGCAACAGAAAATC | 57.295 | 32.000 | 0.00 | 0.00 | 34.46 | 2.17 |
781 | 822 | 8.196771 | TGTAATTCAAGTTCAGCAACAGAAAAT | 58.803 | 29.630 | 0.00 | 0.00 | 34.46 | 1.82 |
791 | 832 | 6.374333 | TCCCAACTATGTAATTCAAGTTCAGC | 59.626 | 38.462 | 0.00 | 0.00 | 30.84 | 4.26 |
802 | 843 | 7.446106 | TGTTACTCCATCCCAACTATGTAAT | 57.554 | 36.000 | 0.00 | 0.00 | 0.00 | 1.89 |
803 | 844 | 6.877668 | TGTTACTCCATCCCAACTATGTAA | 57.122 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
804 | 845 | 6.877668 | TTGTTACTCCATCCCAACTATGTA | 57.122 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
806 | 847 | 7.993183 | ACTAATTGTTACTCCATCCCAACTATG | 59.007 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
807 | 848 | 7.993183 | CACTAATTGTTACTCCATCCCAACTAT | 59.007 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
808 | 849 | 7.181305 | TCACTAATTGTTACTCCATCCCAACTA | 59.819 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
809 | 850 | 6.012858 | TCACTAATTGTTACTCCATCCCAACT | 60.013 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
810 | 851 | 6.177610 | TCACTAATTGTTACTCCATCCCAAC | 58.822 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
812 | 853 | 6.575244 | ATCACTAATTGTTACTCCATCCCA | 57.425 | 37.500 | 0.00 | 0.00 | 0.00 | 4.37 |
814 | 855 | 7.067494 | AGCAAATCACTAATTGTTACTCCATCC | 59.933 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
815 | 856 | 7.989826 | AGCAAATCACTAATTGTTACTCCATC | 58.010 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
817 | 858 | 6.374333 | GGAGCAAATCACTAATTGTTACTCCA | 59.626 | 38.462 | 0.00 | 0.00 | 38.89 | 3.86 |
818 | 859 | 6.599638 | AGGAGCAAATCACTAATTGTTACTCC | 59.400 | 38.462 | 0.00 | 0.00 | 39.25 | 3.85 |
819 | 860 | 7.617041 | AGGAGCAAATCACTAATTGTTACTC | 57.383 | 36.000 | 0.00 | 0.00 | 25.85 | 2.59 |
820 | 861 | 7.448469 | ACAAGGAGCAAATCACTAATTGTTACT | 59.552 | 33.333 | 0.00 | 0.00 | 32.99 | 2.24 |
821 | 862 | 7.538678 | CACAAGGAGCAAATCACTAATTGTTAC | 59.461 | 37.037 | 0.00 | 0.00 | 0.00 | 2.50 |
823 | 864 | 6.449698 | CACAAGGAGCAAATCACTAATTGTT | 58.550 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
825 | 866 | 5.047802 | ACCACAAGGAGCAAATCACTAATTG | 60.048 | 40.000 | 0.00 | 0.00 | 38.69 | 2.32 |
828 | 879 | 3.820467 | CACCACAAGGAGCAAATCACTAA | 59.180 | 43.478 | 0.00 | 0.00 | 38.69 | 2.24 |
830 | 881 | 2.233271 | CACCACAAGGAGCAAATCACT | 58.767 | 47.619 | 0.00 | 0.00 | 38.69 | 3.41 |
839 | 890 | 5.059161 | CACCATATGATACACCACAAGGAG | 58.941 | 45.833 | 3.65 | 0.00 | 38.69 | 3.69 |
841 | 892 | 4.576053 | CACACCATATGATACACCACAAGG | 59.424 | 45.833 | 3.65 | 0.00 | 42.21 | 3.61 |
852 | 903 | 6.096673 | TGCTTCGTATACACACCATATGAT | 57.903 | 37.500 | 3.65 | 0.00 | 0.00 | 2.45 |
866 | 917 | 7.272978 | ACAATAATACAGTCCTTGCTTCGTAT | 58.727 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
867 | 918 | 6.636705 | ACAATAATACAGTCCTTGCTTCGTA | 58.363 | 36.000 | 0.00 | 0.00 | 0.00 | 3.43 |
868 | 919 | 5.488341 | ACAATAATACAGTCCTTGCTTCGT | 58.512 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
917 | 996 | 3.061161 | CAGCAGTTTTTCAGCACAAACAC | 59.939 | 43.478 | 0.00 | 0.00 | 35.66 | 3.32 |
932 | 1011 | 0.975040 | TTGCAAACCACCCAGCAGTT | 60.975 | 50.000 | 0.00 | 0.00 | 38.35 | 3.16 |
978 | 1057 | 3.552890 | GCAATCAAACCCCAGAAGTGAAC | 60.553 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
1009 | 1088 | 1.001048 | CACAGCCTTCACCATTGTGTG | 60.001 | 52.381 | 0.00 | 0.00 | 43.26 | 3.82 |
1155 | 1234 | 2.223947 | GGCCTAAACAACAACCAACCAG | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1202 | 1281 | 1.219393 | GAGCCCTTCCTTGAGTCCG | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
1291 | 1370 | 6.202954 | ACAATTCGTCTGTTCTCAAAGTAAGG | 59.797 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
1295 | 1374 | 4.260784 | GCACAATTCGTCTGTTCTCAAAGT | 60.261 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
1300 | 1379 | 2.802816 | ACAGCACAATTCGTCTGTTCTC | 59.197 | 45.455 | 0.00 | 0.00 | 34.40 | 2.87 |
1313 | 1392 | 1.000385 | GCACCAATAAGCACAGCACAA | 60.000 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
1337 | 1416 | 6.126863 | AGTGTGGTCCTATGAAAGAAATCA | 57.873 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
1347 | 1426 | 2.305927 | AGGGTTGAAGTGTGGTCCTATG | 59.694 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
1348 | 1427 | 2.305927 | CAGGGTTGAAGTGTGGTCCTAT | 59.694 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1442 | 1521 | 6.645884 | AGGGTATAAACAAAGTACCATCCA | 57.354 | 37.500 | 3.52 | 0.00 | 39.67 | 3.41 |
1454 | 1533 | 4.288626 | AGTGAGGCAAGAAGGGTATAAACA | 59.711 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
1552 | 1631 | 4.096732 | ACAAAAAGTGAACTGTCAGTGC | 57.903 | 40.909 | 6.18 | 4.89 | 37.50 | 4.40 |
1569 | 1648 | 0.550914 | AGCAACACCTGGGAGACAAA | 59.449 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1590 | 1669 | 5.240183 | ACATGGCAGTCAGTAATATTGATGC | 59.760 | 40.000 | 0.00 | 9.75 | 32.89 | 3.91 |
1598 | 1677 | 4.220693 | TGCTTACATGGCAGTCAGTAAT | 57.779 | 40.909 | 0.00 | 0.00 | 34.56 | 1.89 |
1859 | 2022 | 5.728471 | TCTGCAAAAACAACTTCATTCCAA | 58.272 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
1946 | 2109 | 9.151471 | GCTCTTCAAACTTACTCATACAACATA | 57.849 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1958 | 2121 | 2.224793 | ACCCCAGGCTCTTCAAACTTAC | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
1978 | 2141 | 8.205131 | TCCAAAAGTAGACTAAAGTTCACAAC | 57.795 | 34.615 | 0.00 | 0.00 | 0.00 | 3.32 |
2199 | 2368 | 8.507249 | GCATTTTTCCCTATAGACATGTGATAC | 58.493 | 37.037 | 1.15 | 0.00 | 0.00 | 2.24 |
2237 | 2406 | 2.674357 | CTGCATGCCAAATGCCTAAAAC | 59.326 | 45.455 | 16.68 | 0.00 | 43.94 | 2.43 |
2261 | 2430 | 2.769602 | ATTTAGGAGCGGAGGGAGTA | 57.230 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2262 | 2431 | 2.769602 | TATTTAGGAGCGGAGGGAGT | 57.230 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2263 | 2432 | 4.773149 | ACTTATATTTAGGAGCGGAGGGAG | 59.227 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2264 | 2433 | 4.748701 | ACTTATATTTAGGAGCGGAGGGA | 58.251 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2265 | 2434 | 4.773149 | AGACTTATATTTAGGAGCGGAGGG | 59.227 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2266 | 2435 | 5.986501 | AGACTTATATTTAGGAGCGGAGG | 57.013 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2267 | 2436 | 8.664211 | AAAAAGACTTATATTTAGGAGCGGAG | 57.336 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
2268 | 2437 | 9.760077 | CTAAAAAGACTTATATTTAGGAGCGGA | 57.240 | 33.333 | 8.91 | 0.00 | 33.69 | 5.54 |
2269 | 2438 | 9.760077 | TCTAAAAAGACTTATATTTAGGAGCGG | 57.240 | 33.333 | 13.94 | 0.00 | 36.48 | 5.52 |
2293 | 2462 | 9.314321 | CCGTATGTAGTTTGTATTGAAATCTCT | 57.686 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
2294 | 2463 | 9.309516 | TCCGTATGTAGTTTGTATTGAAATCTC | 57.690 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
2295 | 2464 | 9.832445 | ATCCGTATGTAGTTTGTATTGAAATCT | 57.168 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
2296 | 2465 | 9.864034 | CATCCGTATGTAGTTTGTATTGAAATC | 57.136 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2297 | 2466 | 9.391006 | ACATCCGTATGTAGTTTGTATTGAAAT | 57.609 | 29.630 | 0.00 | 0.00 | 44.66 | 2.17 |
2298 | 2467 | 8.780846 | ACATCCGTATGTAGTTTGTATTGAAA | 57.219 | 30.769 | 0.00 | 0.00 | 44.66 | 2.69 |
2342 | 2511 | 5.446473 | CGGAGCAAAATGAGTGAATCTACAC | 60.446 | 44.000 | 0.00 | 0.00 | 40.60 | 2.90 |
2343 | 2512 | 4.631377 | CGGAGCAAAATGAGTGAATCTACA | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
2344 | 2513 | 4.631813 | ACGGAGCAAAATGAGTGAATCTAC | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
2345 | 2514 | 4.832248 | ACGGAGCAAAATGAGTGAATCTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
2346 | 2515 | 3.679389 | ACGGAGCAAAATGAGTGAATCT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
2347 | 2516 | 5.065218 | ACATACGGAGCAAAATGAGTGAATC | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2348 | 2517 | 4.943705 | ACATACGGAGCAAAATGAGTGAAT | 59.056 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2349 | 2518 | 4.323417 | ACATACGGAGCAAAATGAGTGAA | 58.677 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
2350 | 2519 | 3.937814 | ACATACGGAGCAAAATGAGTGA | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
2351 | 2520 | 4.260375 | GCTACATACGGAGCAAAATGAGTG | 60.260 | 45.833 | 0.00 | 0.00 | 38.62 | 3.51 |
2352 | 2521 | 3.871594 | GCTACATACGGAGCAAAATGAGT | 59.128 | 43.478 | 0.00 | 0.00 | 38.62 | 3.41 |
2353 | 2522 | 3.248602 | GGCTACATACGGAGCAAAATGAG | 59.751 | 47.826 | 0.00 | 0.00 | 40.64 | 2.90 |
2354 | 2523 | 3.118408 | AGGCTACATACGGAGCAAAATGA | 60.118 | 43.478 | 0.00 | 0.00 | 40.64 | 2.57 |
2355 | 2524 | 3.206150 | AGGCTACATACGGAGCAAAATG | 58.794 | 45.455 | 0.00 | 0.00 | 40.64 | 2.32 |
2356 | 2525 | 3.134804 | AGAGGCTACATACGGAGCAAAAT | 59.865 | 43.478 | 0.00 | 0.00 | 40.64 | 1.82 |
2357 | 2526 | 2.500098 | AGAGGCTACATACGGAGCAAAA | 59.500 | 45.455 | 0.00 | 0.00 | 40.64 | 2.44 |
2358 | 2527 | 2.108168 | AGAGGCTACATACGGAGCAAA | 58.892 | 47.619 | 0.00 | 0.00 | 40.64 | 3.68 |
2359 | 2528 | 1.776662 | AGAGGCTACATACGGAGCAA | 58.223 | 50.000 | 0.00 | 0.00 | 40.64 | 3.91 |
2360 | 2529 | 1.776662 | AAGAGGCTACATACGGAGCA | 58.223 | 50.000 | 0.00 | 0.00 | 40.64 | 4.26 |
2361 | 2530 | 4.238514 | CAATAAGAGGCTACATACGGAGC | 58.761 | 47.826 | 0.00 | 0.00 | 38.00 | 4.70 |
2362 | 2531 | 4.523173 | TCCAATAAGAGGCTACATACGGAG | 59.477 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
2363 | 2532 | 4.476297 | TCCAATAAGAGGCTACATACGGA | 58.524 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
2364 | 2533 | 4.866508 | TCCAATAAGAGGCTACATACGG | 57.133 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
2365 | 2534 | 6.692486 | AGATTCCAATAAGAGGCTACATACG | 58.308 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2366 | 2535 | 7.902087 | AGAGATTCCAATAAGAGGCTACATAC | 58.098 | 38.462 | 0.00 | 0.00 | 0.00 | 2.39 |
2367 | 2536 | 9.601810 | TTAGAGATTCCAATAAGAGGCTACATA | 57.398 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2368 | 2537 | 8.497910 | TTAGAGATTCCAATAAGAGGCTACAT | 57.502 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
2369 | 2538 | 7.914427 | TTAGAGATTCCAATAAGAGGCTACA | 57.086 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2370 | 2539 | 9.614792 | TTTTTAGAGATTCCAATAAGAGGCTAC | 57.385 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
2371 | 2540 | 9.838339 | CTTTTTAGAGATTCCAATAAGAGGCTA | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 3.93 |
2372 | 2541 | 7.777440 | CCTTTTTAGAGATTCCAATAAGAGGCT | 59.223 | 37.037 | 0.00 | 0.00 | 0.00 | 4.58 |
2373 | 2542 | 7.469318 | GCCTTTTTAGAGATTCCAATAAGAGGC | 60.469 | 40.741 | 0.00 | 0.00 | 34.29 | 4.70 |
2374 | 2543 | 7.777440 | AGCCTTTTTAGAGATTCCAATAAGAGG | 59.223 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
2375 | 2544 | 8.744568 | AGCCTTTTTAGAGATTCCAATAAGAG | 57.255 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
2389 | 2558 | 9.333724 | CCGTTCCTAAATATAAGCCTTTTTAGA | 57.666 | 33.333 | 8.15 | 0.00 | 34.90 | 2.10 |
2390 | 2559 | 9.333724 | TCCGTTCCTAAATATAAGCCTTTTTAG | 57.666 | 33.333 | 1.71 | 1.71 | 33.47 | 1.85 |
2391 | 2560 | 9.333724 | CTCCGTTCCTAAATATAAGCCTTTTTA | 57.666 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
2392 | 2561 | 7.284716 | CCTCCGTTCCTAAATATAAGCCTTTTT | 59.715 | 37.037 | 0.00 | 0.00 | 0.00 | 1.94 |
2393 | 2562 | 6.771267 | CCTCCGTTCCTAAATATAAGCCTTTT | 59.229 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
2394 | 2563 | 6.296803 | CCTCCGTTCCTAAATATAAGCCTTT | 58.703 | 40.000 | 0.00 | 0.00 | 0.00 | 3.11 |
2395 | 2564 | 5.221864 | CCCTCCGTTCCTAAATATAAGCCTT | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2396 | 2565 | 4.286291 | CCCTCCGTTCCTAAATATAAGCCT | 59.714 | 45.833 | 0.00 | 0.00 | 0.00 | 4.58 |
2397 | 2566 | 4.285260 | TCCCTCCGTTCCTAAATATAAGCC | 59.715 | 45.833 | 0.00 | 0.00 | 0.00 | 4.35 |
2398 | 2567 | 5.011840 | ACTCCCTCCGTTCCTAAATATAAGC | 59.988 | 44.000 | 0.00 | 0.00 | 0.00 | 3.09 |
2399 | 2568 | 6.667558 | ACTCCCTCCGTTCCTAAATATAAG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
2400 | 2569 | 7.529555 | TCTACTCCCTCCGTTCCTAAATATAA | 58.470 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
2401 | 2570 | 7.095183 | TCTACTCCCTCCGTTCCTAAATATA | 57.905 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
2402 | 2571 | 5.961897 | TCTACTCCCTCCGTTCCTAAATAT | 58.038 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
2403 | 2572 | 5.393068 | TCTACTCCCTCCGTTCCTAAATA | 57.607 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2404 | 2573 | 4.261411 | TCTACTCCCTCCGTTCCTAAAT | 57.739 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
2405 | 2574 | 3.744940 | TCTACTCCCTCCGTTCCTAAA | 57.255 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
2406 | 2575 | 3.053095 | ACATCTACTCCCTCCGTTCCTAA | 60.053 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
2407 | 2576 | 2.512896 | ACATCTACTCCCTCCGTTCCTA | 59.487 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
2408 | 2577 | 1.288335 | ACATCTACTCCCTCCGTTCCT | 59.712 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
2409 | 2578 | 1.777941 | ACATCTACTCCCTCCGTTCC | 58.222 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2410 | 2579 | 4.583489 | TCATAACATCTACTCCCTCCGTTC | 59.417 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
2411 | 2580 | 4.543689 | TCATAACATCTACTCCCTCCGTT | 58.456 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
2412 | 2581 | 4.180377 | TCATAACATCTACTCCCTCCGT | 57.820 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
2413 | 2582 | 5.730296 | AATCATAACATCTACTCCCTCCG | 57.270 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
2414 | 2583 | 8.816894 | TCATAAATCATAACATCTACTCCCTCC | 58.183 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2478 | 2647 | 1.538634 | GCCAAAGCAACACAAGCATCA | 60.539 | 47.619 | 0.00 | 0.00 | 39.53 | 3.07 |
2634 | 2803 | 9.077885 | TGTTACTGTAGCATCACATCATAGATA | 57.922 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
2777 | 2946 | 8.342634 | GCTCTAAACAATACAGTGAACAGAAAA | 58.657 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2857 | 3026 | 7.467623 | CAAGCAGGTGAATTTACAGATAAGAC | 58.532 | 38.462 | 2.50 | 0.00 | 0.00 | 3.01 |
2858 | 3027 | 6.094048 | GCAAGCAGGTGAATTTACAGATAAGA | 59.906 | 38.462 | 2.50 | 0.00 | 0.00 | 2.10 |
2859 | 3028 | 6.094603 | AGCAAGCAGGTGAATTTACAGATAAG | 59.905 | 38.462 | 2.50 | 0.00 | 0.00 | 1.73 |
2860 | 3029 | 5.945784 | AGCAAGCAGGTGAATTTACAGATAA | 59.054 | 36.000 | 2.50 | 0.00 | 0.00 | 1.75 |
2946 | 3127 | 5.782047 | TCCAAATCAATGTTAAACAGGCTG | 58.218 | 37.500 | 14.16 | 14.16 | 0.00 | 4.85 |
2956 | 3137 | 6.131264 | TCATGCCTCTATCCAAATCAATGTT | 58.869 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2986 | 3167 | 3.063452 | CGGACAGTAATGGTTACATGTGC | 59.937 | 47.826 | 9.11 | 0.81 | 38.60 | 4.57 |
2987 | 3168 | 4.092821 | CACGGACAGTAATGGTTACATGTG | 59.907 | 45.833 | 9.11 | 0.00 | 38.60 | 3.21 |
3062 | 3243 | 0.812412 | ACTTACCGCAAGCAACACGT | 60.812 | 50.000 | 0.00 | 0.00 | 37.83 | 4.49 |
3209 | 3392 | 4.813750 | TCATCAGAACAGAAGAGATGCA | 57.186 | 40.909 | 0.00 | 0.00 | 36.81 | 3.96 |
3309 | 3492 | 3.509442 | TGCATTCTGAAAAGGTTCCCAT | 58.491 | 40.909 | 0.00 | 0.00 | 32.28 | 4.00 |
3391 | 3574 | 5.867716 | AGTAACACATAGGAATTGACACGAC | 59.132 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3411 | 3594 | 6.020971 | TGACAGCGATAAAGTTCAGAGTAA | 57.979 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
3428 | 3611 | 2.826428 | TCTCGATAGCCAAATGACAGC | 58.174 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
3448 | 3631 | 3.118261 | ACAGAACTGTTCCAGTCACACAT | 60.118 | 43.478 | 16.48 | 0.00 | 44.62 | 3.21 |
3451 | 3634 | 2.499693 | TGACAGAACTGTTCCAGTCACA | 59.500 | 45.455 | 28.02 | 16.11 | 44.62 | 3.58 |
3474 | 3657 | 2.290367 | CGAACAACAGATCCACAAGCAA | 59.710 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
3500 | 3694 | 3.151554 | TCTGTAAACACGTCCAGAGCTA | 58.848 | 45.455 | 0.00 | 0.00 | 30.80 | 3.32 |
3511 | 3705 | 5.048507 | ACCTCTCTCGTTTTCTGTAAACAC | 58.951 | 41.667 | 9.95 | 0.00 | 45.20 | 3.32 |
3513 | 3707 | 6.530887 | GGATACCTCTCTCGTTTTCTGTAAAC | 59.469 | 42.308 | 0.37 | 0.37 | 42.20 | 2.01 |
3533 | 3727 | 3.350219 | ACCACCAGAACACATGGATAC | 57.650 | 47.619 | 0.00 | 0.00 | 40.51 | 2.24 |
3535 | 3729 | 2.376518 | AGAACCACCAGAACACATGGAT | 59.623 | 45.455 | 0.00 | 0.00 | 40.51 | 3.41 |
3574 | 3849 | 8.107095 | ACCATTCCAAACAGATAAAAGTAGCTA | 58.893 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
3602 | 3877 | 4.873827 | TCTGTTTAGTTTCACTTTGCGTCT | 59.126 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
3629 | 3904 | 1.153429 | GTGCCACCGTGTAGGATCC | 60.153 | 63.158 | 2.48 | 2.48 | 45.00 | 3.36 |
3764 | 4042 | 4.783621 | TCTGCGTGCTGGCCATCC | 62.784 | 66.667 | 5.51 | 0.18 | 0.00 | 3.51 |
3806 | 4092 | 0.608035 | GTTGCCGTCAATTGGGAGGA | 60.608 | 55.000 | 15.59 | 0.49 | 34.29 | 3.71 |
3839 | 4125 | 4.424566 | CCACACCATTGCCGCTGC | 62.425 | 66.667 | 0.00 | 0.00 | 38.26 | 5.25 |
3968 | 4257 | 1.807771 | AAGTAGTCGGGGTCCCTGGA | 61.808 | 60.000 | 17.33 | 7.49 | 0.00 | 3.86 |
4057 | 4358 | 3.262420 | ACCTGTTGCTATTGACGATCAC | 58.738 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
4058 | 4359 | 3.610040 | ACCTGTTGCTATTGACGATCA | 57.390 | 42.857 | 0.00 | 0.00 | 0.00 | 2.92 |
4166 | 4481 | 2.438434 | CACGGTTGCCATCTCCCC | 60.438 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
4167 | 4482 | 2.270874 | ATCCACGGTTGCCATCTCCC | 62.271 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4170 | 4485 | 0.327924 | TCAATCCACGGTTGCCATCT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4247 | 4563 | 5.440610 | AGCGGATCAGGAAAAACATTATCT | 58.559 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
4254 | 4570 | 3.743886 | CGTTTAGCGGATCAGGAAAAAC | 58.256 | 45.455 | 0.00 | 0.00 | 36.85 | 2.43 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.