Multiple sequence alignment - TraesCS2A01G121200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G121200 chr2A 100.000 4276 0 0 1 4276 70983323 70987598 0.000000e+00 7897.0
1 TraesCS2A01G121200 chr2A 95.706 163 7 0 2262 2424 578387717 578387555 3.280000e-66 263.0
2 TraesCS2A01G121200 chr2A 93.529 170 9 2 2260 2429 342647562 342647395 7.100000e-63 252.0
3 TraesCS2A01G121200 chr2A 90.506 158 15 0 443 600 190772488 190772645 4.330000e-50 209.0
4 TraesCS2A01G121200 chr2A 86.598 194 17 5 659 845 190772484 190772675 5.600000e-49 206.0
5 TraesCS2A01G121200 chr2A 83.333 78 11 1 3729 3806 729178531 729178606 2.130000e-08 71.3
6 TraesCS2A01G121200 chr2D 94.494 1344 62 6 895 2230 72170274 72171613 0.000000e+00 2061.0
7 TraesCS2A01G121200 chr2D 92.473 1116 41 19 2434 3533 72171613 72172701 0.000000e+00 1555.0
8 TraesCS2A01G121200 chr2D 91.810 757 34 11 3537 4276 72172775 72173520 0.000000e+00 1029.0
9 TraesCS2A01G121200 chr2D 89.735 604 40 10 3 600 72169371 72169958 0.000000e+00 752.0
10 TraesCS2A01G121200 chr2D 95.152 165 7 1 2262 2426 362930969 362930806 4.240000e-65 259.0
11 TraesCS2A01G121200 chr2D 86.885 244 14 7 4049 4276 524087271 524087512 1.530000e-64 257.0
12 TraesCS2A01G121200 chr2D 93.077 130 6 3 4148 4276 38263980 38263853 2.030000e-43 187.0
13 TraesCS2A01G121200 chr2D 86.782 174 16 4 663 831 72169802 72169973 2.030000e-43 187.0
14 TraesCS2A01G121200 chr2B 93.209 751 51 0 894 1644 108904735 108905485 0.000000e+00 1105.0
15 TraesCS2A01G121200 chr2B 91.506 624 42 5 1643 2263 108905568 108906183 0.000000e+00 848.0
16 TraesCS2A01G121200 chr2B 92.115 558 27 9 2988 3533 108906689 108907241 0.000000e+00 771.0
17 TraesCS2A01G121200 chr2B 88.658 529 39 18 2422 2948 108906181 108906690 3.630000e-175 625.0
18 TraesCS2A01G121200 chr2B 83.254 627 52 22 6 614 108903852 108904443 1.050000e-145 527.0
19 TraesCS2A01G121200 chr2B 86.929 482 25 9 3811 4275 108907553 108908013 1.370000e-139 507.0
20 TraesCS2A01G121200 chr2B 92.105 228 18 0 3537 3764 108907326 108907553 5.330000e-84 322.0
21 TraesCS2A01G121200 chr2B 91.139 158 14 0 443 600 779218251 779218408 9.310000e-52 215.0
22 TraesCS2A01G121200 chr6A 85.347 389 25 17 3916 4276 49088070 49087686 1.450000e-99 374.0
23 TraesCS2A01G121200 chr6A 84.834 211 18 4 3666 3868 49088263 49088059 2.610000e-47 200.0
24 TraesCS2A01G121200 chr6B 94.706 170 6 3 2262 2430 132353416 132353583 1.180000e-65 261.0
25 TraesCS2A01G121200 chr6B 91.139 158 14 0 443 600 695975326 695975483 9.310000e-52 215.0
26 TraesCS2A01G121200 chr6B 85.567 194 19 5 659 845 695975322 695975513 1.210000e-45 195.0
27 TraesCS2A01G121200 chr4D 92.857 182 9 3 2261 2440 34661526 34661705 1.180000e-65 261.0
28 TraesCS2A01G121200 chr3D 95.122 164 7 1 2262 2425 537154702 537154864 1.530000e-64 257.0
29 TraesCS2A01G121200 chr1D 94.118 170 9 1 2262 2431 463382066 463381898 1.530000e-64 257.0
30 TraesCS2A01G121200 chr5B 92.571 175 12 1 2253 2427 45271615 45271442 2.550000e-62 250.0
31 TraesCS2A01G121200 chr5B 89.634 164 17 0 443 606 515117705 515117542 4.330000e-50 209.0
32 TraesCS2A01G121200 chr5B 90.506 158 15 0 443 600 655868043 655868200 4.330000e-50 209.0
33 TraesCS2A01G121200 chr5B 85.052 194 20 5 659 845 515117709 515117518 5.640000e-44 189.0
34 TraesCS2A01G121200 chr5B 83.854 192 23 6 659 845 47274122 47274310 4.390000e-40 176.0
35 TraesCS2A01G121200 chr1B 92.090 177 12 2 2262 2437 623195844 623195669 9.180000e-62 248.0
36 TraesCS2A01G121200 chrUn 90.506 158 15 0 443 600 88594941 88595098 4.330000e-50 209.0
37 TraesCS2A01G121200 chrUn 85.052 194 20 5 659 845 48554117 48553926 5.640000e-44 189.0
38 TraesCS2A01G121200 chrUn 85.714 175 17 6 1637 1805 312812012 312811840 1.220000e-40 178.0
39 TraesCS2A01G121200 chrUn 85.714 175 17 6 1637 1805 397496500 397496328 1.220000e-40 178.0
40 TraesCS2A01G121200 chr3B 89.634 164 17 0 443 606 706296587 706296424 4.330000e-50 209.0
41 TraesCS2A01G121200 chr3B 90.506 158 14 1 443 600 714329039 714329195 1.560000e-49 207.0
42 TraesCS2A01G121200 chr3B 86.010 193 19 6 659 845 714329035 714329225 2.610000e-47 200.0
43 TraesCS2A01G121200 chr7B 84.974 193 22 5 659 845 3437918 3437727 5.640000e-44 189.0
44 TraesCS2A01G121200 chr7B 82.979 94 14 1 3731 3824 120364077 120363986 2.740000e-12 84.2
45 TraesCS2A01G121200 chr7A 85.714 175 17 6 1637 1805 628966111 628965939 1.220000e-40 178.0
46 TraesCS2A01G121200 chr7A 80.392 102 12 3 3711 3806 678949339 678949438 2.130000e-08 71.3
47 TraesCS2A01G121200 chr5A 85.714 175 17 6 1637 1805 31626329 31626157 1.220000e-40 178.0
48 TraesCS2A01G121200 chr5A 85.714 175 17 6 1637 1805 31744311 31744139 1.220000e-40 178.0
49 TraesCS2A01G121200 chr5A 85.714 175 17 6 1637 1805 31833520 31833348 1.220000e-40 178.0
50 TraesCS2A01G121200 chr5A 85.714 175 17 6 1637 1805 31933606 31933434 1.220000e-40 178.0
51 TraesCS2A01G121200 chr4A 80.928 194 17 6 659 845 664674926 664675106 7.460000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G121200 chr2A 70983323 70987598 4275 False 7897.000000 7897 100.000000 1 4276 1 chr2A.!!$F1 4275
1 TraesCS2A01G121200 chr2D 72169371 72173520 4149 False 1116.800000 2061 91.058800 3 4276 5 chr2D.!!$F2 4273
2 TraesCS2A01G121200 chr2B 108903852 108908013 4161 False 672.142857 1105 89.682286 6 4275 7 chr2B.!!$F2 4269
3 TraesCS2A01G121200 chr6A 49087686 49088263 577 True 287.000000 374 85.090500 3666 4276 2 chr6A.!!$R1 610


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 710 0.107017 CATGCTCTGGATTCGGGGTT 60.107 55.0 0.0 0.0 0.0 4.11 F
971 1050 0.249868 TGTCCTGTTGCTTCACTCCG 60.250 55.0 0.0 0.0 0.0 4.63 F
2278 2447 0.106318 GGTACTCCCTCCGCTCCTAA 60.106 60.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 1648 0.550914 AGCAACACCTGGGAGACAAA 59.449 50.000 0.0 0.0 0.0 2.83 R
2408 2577 1.288335 ACATCTACTCCCTCCGTTCCT 59.712 52.381 0.0 0.0 0.0 3.36 R
4170 4485 0.327924 TCAATCCACGGTTGCCATCT 59.672 50.000 0.0 0.0 0.0 2.90 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 64 1.078115 CATCATCCATCCCATCCCCA 58.922 55.000 0.00 0.00 0.00 4.96
57 65 1.005569 CATCATCCATCCCATCCCCAG 59.994 57.143 0.00 0.00 0.00 4.45
100 113 1.205055 CCTTCCTCCTCCCCAACTAC 58.795 60.000 0.00 0.00 0.00 2.73
101 114 1.273896 CCTTCCTCCTCCCCAACTACT 60.274 57.143 0.00 0.00 0.00 2.57
102 115 2.112190 CTTCCTCCTCCCCAACTACTC 58.888 57.143 0.00 0.00 0.00 2.59
103 116 0.338814 TCCTCCTCCCCAACTACTCC 59.661 60.000 0.00 0.00 0.00 3.85
104 117 0.340208 CCTCCTCCCCAACTACTCCT 59.660 60.000 0.00 0.00 0.00 3.69
197 217 1.393883 GGTCTGCGAAATTCGTTCTCC 59.606 52.381 17.05 10.75 42.81 3.71
244 264 0.393808 TAGTTTTGGCCCGGATCTGC 60.394 55.000 0.73 0.00 0.00 4.26
245 265 2.749839 TTTTGGCCCGGATCTGCG 60.750 61.111 0.73 0.00 0.00 5.18
309 331 4.101448 GCCCCGATCTGCCTGTGT 62.101 66.667 0.00 0.00 0.00 3.72
315 337 1.503542 GATCTGCCTGTGTTTGCGG 59.496 57.895 0.00 0.00 35.14 5.69
322 344 2.289756 TGCCTGTGTTTGCGGAGTTATA 60.290 45.455 0.00 0.00 0.00 0.98
328 350 3.002348 GTGTTTGCGGAGTTATATGCTCC 59.998 47.826 14.65 14.65 46.75 4.70
334 356 2.408050 GGAGTTATATGCTCCTGTGCG 58.592 52.381 16.44 0.00 46.71 5.34
335 357 2.224066 GGAGTTATATGCTCCTGTGCGT 60.224 50.000 16.44 0.00 46.71 5.24
336 358 2.797156 GAGTTATATGCTCCTGTGCGTG 59.203 50.000 0.00 0.00 35.36 5.34
337 359 1.867233 GTTATATGCTCCTGTGCGTGG 59.133 52.381 0.00 0.00 35.36 4.94
338 360 1.119684 TATATGCTCCTGTGCGTGGT 58.880 50.000 0.00 0.00 35.36 4.16
339 361 0.179073 ATATGCTCCTGTGCGTGGTC 60.179 55.000 0.00 0.00 35.36 4.02
403 425 1.271379 CCTGTAGTTGGTGTTGGAGGG 60.271 57.143 0.00 0.00 0.00 4.30
473 495 0.826715 TGGGCTGATGCAGTAGACTC 59.173 55.000 5.88 0.00 41.91 3.36
488 510 3.872511 AGACTCTTCTGTGCATCTCAG 57.127 47.619 0.00 0.00 0.00 3.35
517 539 0.448990 GTTTATTTCGTCCCCGTGCC 59.551 55.000 0.00 0.00 35.01 5.01
537 559 2.667481 CCGTGCCATGCTAATTTTGTTG 59.333 45.455 0.00 0.00 0.00 3.33
539 561 2.092524 GTGCCATGCTAATTTTGTTGCG 59.907 45.455 0.00 0.00 0.00 4.85
558 580 2.623889 GCGTCCTACTGTCATATCCAGT 59.376 50.000 9.03 9.03 44.90 4.00
559 581 3.551046 GCGTCCTACTGTCATATCCAGTG 60.551 52.174 12.71 5.30 42.85 3.66
565 587 3.955471 ACTGTCATATCCAGTGGGTTTG 58.045 45.455 9.92 8.04 41.47 2.93
566 588 3.330701 ACTGTCATATCCAGTGGGTTTGT 59.669 43.478 9.92 0.00 41.47 2.83
574 596 3.020984 TCCAGTGGGTTTGTTTTCTGTC 58.979 45.455 9.92 0.00 34.93 3.51
579 601 1.269051 GGGTTTGTTTTCTGTCGCTGG 60.269 52.381 0.00 0.00 0.00 4.85
580 602 1.404035 GGTTTGTTTTCTGTCGCTGGT 59.596 47.619 0.00 0.00 0.00 4.00
585 607 1.264288 GTTTTCTGTCGCTGGTCTTGG 59.736 52.381 0.00 0.00 0.00 3.61
600 622 4.040461 TGGTCTTGGATTACATAGCTAGGC 59.960 45.833 5.07 0.00 0.00 3.93
603 625 3.685139 TGGATTACATAGCTAGGCTGC 57.315 47.619 5.07 0.00 40.10 5.25
606 628 2.533266 TTACATAGCTAGGCTGCAGC 57.467 50.000 30.88 30.88 40.10 5.25
609 631 0.942962 CATAGCTAGGCTGCAGCAAC 59.057 55.000 37.63 22.68 44.36 4.17
614 636 1.734707 GCTAGGCTGCAGCAACAATTG 60.735 52.381 37.63 20.40 44.36 2.32
615 637 0.889994 TAGGCTGCAGCAACAATTGG 59.110 50.000 37.63 0.00 44.36 3.16
624 646 3.756933 AGCAACAATTGGTGATTTGCT 57.243 38.095 27.54 23.83 42.01 3.91
625 647 3.395639 AGCAACAATTGGTGATTTGCTG 58.604 40.909 27.54 0.00 43.96 4.41
626 648 2.096119 GCAACAATTGGTGATTTGCTGC 60.096 45.455 27.54 4.98 36.66 5.25
628 650 3.756933 ACAATTGGTGATTTGCTGCTT 57.243 38.095 10.83 0.00 0.00 3.91
629 651 3.395639 ACAATTGGTGATTTGCTGCTTG 58.604 40.909 10.83 0.00 0.00 4.01
630 652 3.181463 ACAATTGGTGATTTGCTGCTTGT 60.181 39.130 10.83 0.00 0.00 3.16
631 653 2.512485 TTGGTGATTTGCTGCTTGTG 57.488 45.000 0.00 0.00 0.00 3.33
632 654 0.675083 TGGTGATTTGCTGCTTGTGG 59.325 50.000 0.00 0.00 0.00 4.17
633 655 0.675633 GGTGATTTGCTGCTTGTGGT 59.324 50.000 0.00 0.00 0.00 4.16
634 656 1.885887 GGTGATTTGCTGCTTGTGGTA 59.114 47.619 0.00 0.00 0.00 3.25
636 658 3.694072 GGTGATTTGCTGCTTGTGGTATA 59.306 43.478 0.00 0.00 0.00 1.47
637 659 4.201950 GGTGATTTGCTGCTTGTGGTATAG 60.202 45.833 0.00 0.00 0.00 1.31
638 660 3.378112 TGATTTGCTGCTTGTGGTATAGC 59.622 43.478 0.00 0.00 37.89 2.97
639 661 2.488204 TTGCTGCTTGTGGTATAGCA 57.512 45.000 0.00 0.00 44.58 3.49
641 663 3.836365 TGCTGCTTGTGGTATAGCATA 57.164 42.857 8.06 2.13 45.53 3.14
642 664 4.356405 TGCTGCTTGTGGTATAGCATAT 57.644 40.909 8.06 0.00 45.53 1.78
644 666 3.438087 GCTGCTTGTGGTATAGCATATGG 59.562 47.826 8.06 3.32 45.53 2.74
646 668 2.749621 GCTTGTGGTATAGCATATGGGC 59.250 50.000 8.06 6.91 37.35 5.36
647 669 7.779670 CTGCTTGTGGTATAGCATATGGGCT 62.780 48.000 8.06 0.00 45.53 5.19
648 670 3.701205 TGTGGTATAGCATATGGGCTG 57.299 47.619 8.06 0.00 45.44 4.85
655 696 1.906824 GCATATGGGCTGGCATGCT 60.907 57.895 18.92 0.00 40.46 3.79
663 704 1.453762 GGCTGGCATGCTCTGGATTC 61.454 60.000 18.92 0.00 0.00 2.52
669 710 0.107017 CATGCTCTGGATTCGGGGTT 60.107 55.000 0.00 0.00 0.00 4.11
677 718 1.493022 TGGATTCGGGGTTTAGATGGG 59.507 52.381 0.00 0.00 0.00 4.00
678 719 1.493446 GGATTCGGGGTTTAGATGGGT 59.507 52.381 0.00 0.00 0.00 4.51
681 722 1.659022 TCGGGGTTTAGATGGGTTGA 58.341 50.000 0.00 0.00 0.00 3.18
682 723 2.201830 TCGGGGTTTAGATGGGTTGAT 58.798 47.619 0.00 0.00 0.00 2.57
687 728 3.356290 GGTTTAGATGGGTTGATGCAGT 58.644 45.455 0.00 0.00 0.00 4.40
688 729 4.523083 GGTTTAGATGGGTTGATGCAGTA 58.477 43.478 0.00 0.00 0.00 2.74
691 732 3.550437 AGATGGGTTGATGCAGTAGAC 57.450 47.619 0.00 0.00 0.00 2.59
694 735 1.977854 TGGGTTGATGCAGTAGACTGT 59.022 47.619 11.19 0.00 45.45 3.55
695 736 2.371841 TGGGTTGATGCAGTAGACTGTT 59.628 45.455 11.19 0.00 45.45 3.16
696 737 3.003480 GGGTTGATGCAGTAGACTGTTC 58.997 50.000 11.19 9.04 45.45 3.18
700 741 5.470368 GTTGATGCAGTAGACTGTTCTGTA 58.530 41.667 11.19 6.29 45.45 2.74
701 742 5.060662 TGATGCAGTAGACTGTTCTGTAC 57.939 43.478 11.19 0.00 45.45 2.90
702 743 4.522789 TGATGCAGTAGACTGTTCTGTACA 59.477 41.667 11.19 0.00 45.45 2.90
703 744 5.185828 TGATGCAGTAGACTGTTCTGTACAT 59.814 40.000 11.19 4.37 45.45 2.29
704 745 5.060662 TGCAGTAGACTGTTCTGTACATC 57.939 43.478 11.19 0.00 45.45 3.06
705 746 4.767409 TGCAGTAGACTGTTCTGTACATCT 59.233 41.667 11.19 0.00 45.45 2.90
706 747 5.106118 TGCAGTAGACTGTTCTGTACATCTC 60.106 44.000 11.19 0.00 45.45 2.75
707 748 5.106118 GCAGTAGACTGTTCTGTACATCTCA 60.106 44.000 11.19 0.00 45.45 3.27
708 749 6.570571 GCAGTAGACTGTTCTGTACATCTCAA 60.571 42.308 11.19 0.00 45.45 3.02
709 750 7.542890 CAGTAGACTGTTCTGTACATCTCAAT 58.457 38.462 0.00 0.00 39.09 2.57
710 751 8.031864 CAGTAGACTGTTCTGTACATCTCAATT 58.968 37.037 0.00 0.00 39.09 2.32
711 752 9.244292 AGTAGACTGTTCTGTACATCTCAATTA 57.756 33.333 0.00 0.00 35.85 1.40
712 753 9.291664 GTAGACTGTTCTGTACATCTCAATTAC 57.708 37.037 0.00 0.00 35.85 1.89
713 754 7.896811 AGACTGTTCTGTACATCTCAATTACA 58.103 34.615 0.00 0.00 35.85 2.41
714 755 8.367911 AGACTGTTCTGTACATCTCAATTACAA 58.632 33.333 0.00 0.00 35.85 2.41
715 756 8.311650 ACTGTTCTGTACATCTCAATTACAAC 57.688 34.615 0.00 0.00 35.85 3.32
716 757 8.150945 ACTGTTCTGTACATCTCAATTACAACT 58.849 33.333 0.00 0.00 35.85 3.16
717 758 8.902540 TGTTCTGTACATCTCAATTACAACTT 57.097 30.769 0.00 0.00 0.00 2.66
718 759 8.773645 TGTTCTGTACATCTCAATTACAACTTG 58.226 33.333 0.00 0.00 0.00 3.16
719 760 8.774586 GTTCTGTACATCTCAATTACAACTTGT 58.225 33.333 0.00 0.00 0.00 3.16
720 761 8.902540 TCTGTACATCTCAATTACAACTTGTT 57.097 30.769 0.00 0.00 0.00 2.83
721 762 9.337396 TCTGTACATCTCAATTACAACTTGTTT 57.663 29.630 0.00 0.00 0.00 2.83
729 770 9.872757 TCTCAATTACAACTTGTTTATTTCGTC 57.127 29.630 0.00 0.00 0.00 4.20
730 771 9.113876 CTCAATTACAACTTGTTTATTTCGTCC 57.886 33.333 0.00 0.00 0.00 4.79
731 772 8.077386 TCAATTACAACTTGTTTATTTCGTCCC 58.923 33.333 0.00 0.00 0.00 4.46
732 773 7.754851 ATTACAACTTGTTTATTTCGTCCCT 57.245 32.000 0.00 0.00 0.00 4.20
733 774 5.432885 ACAACTTGTTTATTTCGTCCCTG 57.567 39.130 0.00 0.00 0.00 4.45
734 775 4.885325 ACAACTTGTTTATTTCGTCCCTGT 59.115 37.500 0.00 0.00 0.00 4.00
735 776 5.212194 CAACTTGTTTATTTCGTCCCTGTG 58.788 41.667 0.00 0.00 0.00 3.66
736 777 3.252458 ACTTGTTTATTTCGTCCCTGTGC 59.748 43.478 0.00 0.00 0.00 4.57
737 778 3.134574 TGTTTATTTCGTCCCTGTGCT 57.865 42.857 0.00 0.00 0.00 4.40
749 790 2.105649 TCCCTGTGCTGTGTCATGTTAA 59.894 45.455 0.00 0.00 0.00 2.01
752 793 4.379813 CCCTGTGCTGTGTCATGTTAATTC 60.380 45.833 0.00 0.00 0.00 2.17
765 806 7.148255 TGTCATGTTAATTCTGTTGCATCCTAC 60.148 37.037 0.00 0.00 0.00 3.18
768 809 5.123820 TGTTAATTCTGTTGCATCCTACTGC 59.876 40.000 0.00 0.00 42.62 4.40
772 813 2.771372 TCTGTTGCATCCTACTGCCATA 59.229 45.455 0.00 0.00 41.58 2.74
774 815 3.743521 TGTTGCATCCTACTGCCATATC 58.256 45.455 0.00 0.00 41.58 1.63
780 821 5.174395 GCATCCTACTGCCATATCTTAGTG 58.826 45.833 0.00 0.00 36.10 2.74
781 822 5.047021 GCATCCTACTGCCATATCTTAGTGA 60.047 44.000 0.00 0.00 36.10 3.41
791 832 7.988737 TGCCATATCTTAGTGATTTTCTGTTG 58.011 34.615 0.00 0.00 36.65 3.33
802 843 6.035843 GTGATTTTCTGTTGCTGAACTTGAA 58.964 36.000 0.00 0.00 32.79 2.69
803 844 6.698766 GTGATTTTCTGTTGCTGAACTTGAAT 59.301 34.615 0.00 0.00 32.79 2.57
804 845 7.223387 GTGATTTTCTGTTGCTGAACTTGAATT 59.777 33.333 0.00 0.00 32.79 2.17
806 847 7.985634 TTTTCTGTTGCTGAACTTGAATTAC 57.014 32.000 0.00 0.00 32.79 1.89
807 848 6.691754 TTCTGTTGCTGAACTTGAATTACA 57.308 33.333 0.00 0.00 32.79 2.41
808 849 6.882610 TCTGTTGCTGAACTTGAATTACAT 57.117 33.333 0.00 0.00 32.79 2.29
809 850 7.977789 TCTGTTGCTGAACTTGAATTACATA 57.022 32.000 0.00 0.00 32.79 2.29
810 851 8.032952 TCTGTTGCTGAACTTGAATTACATAG 57.967 34.615 0.00 0.00 32.79 2.23
812 853 8.165239 TGTTGCTGAACTTGAATTACATAGTT 57.835 30.769 0.00 0.00 34.86 2.24
814 855 7.144722 TGCTGAACTTGAATTACATAGTTGG 57.855 36.000 0.00 0.00 33.53 3.77
815 856 6.150976 TGCTGAACTTGAATTACATAGTTGGG 59.849 38.462 0.00 0.00 33.53 4.12
817 858 7.067494 GCTGAACTTGAATTACATAGTTGGGAT 59.933 37.037 0.00 0.00 33.53 3.85
818 859 8.279970 TGAACTTGAATTACATAGTTGGGATG 57.720 34.615 0.00 0.00 33.53 3.51
819 860 7.339212 TGAACTTGAATTACATAGTTGGGATGG 59.661 37.037 0.00 0.00 33.53 3.51
820 861 6.969043 ACTTGAATTACATAGTTGGGATGGA 58.031 36.000 0.00 0.00 0.00 3.41
821 862 7.056635 ACTTGAATTACATAGTTGGGATGGAG 58.943 38.462 0.00 0.00 0.00 3.86
823 864 7.684317 TGAATTACATAGTTGGGATGGAGTA 57.316 36.000 0.00 0.00 0.00 2.59
825 866 7.990886 TGAATTACATAGTTGGGATGGAGTAAC 59.009 37.037 0.00 0.00 0.00 2.50
828 879 6.327386 ACATAGTTGGGATGGAGTAACAAT 57.673 37.500 0.00 0.00 0.00 2.71
830 881 7.867921 ACATAGTTGGGATGGAGTAACAATTA 58.132 34.615 0.00 0.00 0.00 1.40
839 890 7.196331 GGATGGAGTAACAATTAGTGATTTGC 58.804 38.462 0.00 0.00 0.00 3.68
841 892 7.377766 TGGAGTAACAATTAGTGATTTGCTC 57.622 36.000 0.00 0.00 0.00 4.26
852 903 3.146066 GTGATTTGCTCCTTGTGGTGTA 58.854 45.455 0.00 0.00 34.23 2.90
866 917 5.941555 TGTGGTGTATCATATGGTGTGTA 57.058 39.130 2.13 0.00 0.00 2.90
867 918 6.493189 TGTGGTGTATCATATGGTGTGTAT 57.507 37.500 2.13 0.00 0.00 2.29
868 919 7.604657 TGTGGTGTATCATATGGTGTGTATA 57.395 36.000 2.13 0.00 0.00 1.47
879 930 2.563620 TGGTGTGTATACGAAGCAAGGA 59.436 45.455 6.95 0.00 0.00 3.36
892 943 6.636705 ACGAAGCAAGGACTGTATTATTGTA 58.363 36.000 0.00 0.00 0.00 2.41
932 1011 8.143193 AGATTTATGATGTGTTTGTGCTGAAAA 58.857 29.630 0.00 0.00 0.00 2.29
961 1040 2.472816 GTGGTTTGCAATGTCCTGTTG 58.527 47.619 0.00 0.00 0.00 3.33
971 1050 0.249868 TGTCCTGTTGCTTCACTCCG 60.250 55.000 0.00 0.00 0.00 4.63
1009 1088 2.094545 GGGGTTTGATTGCAGATCACAC 60.095 50.000 14.54 14.54 0.00 3.82
1096 1175 1.723288 CCAGGAGGGAGAGGGTAATC 58.277 60.000 0.00 0.00 40.01 1.75
1155 1234 5.163794 CCCTGTATGTTCGTTGGATGTAAAC 60.164 44.000 0.00 0.00 0.00 2.01
1247 1326 2.177531 CATGTGCACGCTCTTGGC 59.822 61.111 13.13 0.00 37.64 4.52
1291 1370 7.739498 TGTCAACTGGTACCTAAATTTCTTC 57.261 36.000 14.36 0.00 0.00 2.87
1295 1374 8.662255 TCAACTGGTACCTAAATTTCTTCCTTA 58.338 33.333 14.36 0.00 0.00 2.69
1300 1379 9.292195 TGGTACCTAAATTTCTTCCTTACTTTG 57.708 33.333 14.36 0.00 0.00 2.77
1313 1392 6.097915 TCCTTACTTTGAGAACAGACGAAT 57.902 37.500 0.00 0.00 0.00 3.34
1337 1416 0.881118 CTGTGCTTATTGGTGCGGTT 59.119 50.000 0.00 0.00 0.00 4.44
1347 1426 3.363341 TTGGTGCGGTTGATTTCTTTC 57.637 42.857 0.00 0.00 0.00 2.62
1348 1427 2.302260 TGGTGCGGTTGATTTCTTTCA 58.698 42.857 0.00 0.00 0.00 2.69
1442 1521 1.421268 TGGAAATGTGACAGCTGGAGT 59.579 47.619 19.93 0.00 0.00 3.85
1454 1533 2.026822 CAGCTGGAGTGGATGGTACTTT 60.027 50.000 5.57 0.00 0.00 2.66
1539 1618 5.172687 TCCAAATCAGGTAGCATTGTGTA 57.827 39.130 0.00 0.00 0.00 2.90
1569 1648 1.299541 CCGCACTGACAGTTCACTTT 58.700 50.000 5.04 0.00 0.00 2.66
1590 1669 0.976641 TGTCTCCCAGGTGTTGCTAG 59.023 55.000 0.00 0.00 0.00 3.42
1598 1677 3.544684 CCAGGTGTTGCTAGCATCAATA 58.455 45.455 25.99 6.00 0.00 1.90
1859 2022 3.794717 TGTGCATGCTTGTTTGTCAAAT 58.205 36.364 20.33 0.00 35.48 2.32
1978 2141 2.040412 AGTAAGTTTGAAGAGCCTGGGG 59.960 50.000 0.00 0.00 0.00 4.96
2108 2277 4.112634 GGTGTGTTTTCTTGCTTTTCTCC 58.887 43.478 0.00 0.00 0.00 3.71
2138 2307 7.287061 TCCACATTTATATCTTGAAATCCGGT 58.713 34.615 0.00 0.00 0.00 5.28
2139 2308 8.433599 TCCACATTTATATCTTGAAATCCGGTA 58.566 33.333 0.00 0.00 0.00 4.02
2182 2351 5.818136 TTGGCTTGCTTGTCTTATATGAC 57.182 39.130 10.98 10.98 37.47 3.06
2237 2406 3.309410 GGGAAAAATGCACAACACAAGTG 59.691 43.478 0.00 0.00 39.92 3.16
2261 2430 2.983791 GCATTTGGCATGCAGGGT 59.016 55.556 21.36 0.00 44.00 4.34
2262 2431 2.200989 GCATTTGGCATGCAGGGTA 58.799 52.632 21.36 0.00 44.00 3.69
2263 2432 0.179103 GCATTTGGCATGCAGGGTAC 60.179 55.000 21.36 0.64 44.00 3.34
2264 2433 1.477553 CATTTGGCATGCAGGGTACT 58.522 50.000 21.36 0.00 0.00 2.73
2265 2434 1.406539 CATTTGGCATGCAGGGTACTC 59.593 52.381 21.36 0.00 0.00 2.59
2266 2435 0.323360 TTTGGCATGCAGGGTACTCC 60.323 55.000 21.36 0.00 0.00 3.85
2276 2445 2.279408 GGTACTCCCTCCGCTCCT 59.721 66.667 0.00 0.00 0.00 3.69
2277 2446 1.535685 GGTACTCCCTCCGCTCCTA 59.464 63.158 0.00 0.00 0.00 2.94
2278 2447 0.106318 GGTACTCCCTCCGCTCCTAA 60.106 60.000 0.00 0.00 0.00 2.69
2279 2448 1.687368 GGTACTCCCTCCGCTCCTAAA 60.687 57.143 0.00 0.00 0.00 1.85
2280 2449 2.317973 GTACTCCCTCCGCTCCTAAAT 58.682 52.381 0.00 0.00 0.00 1.40
2281 2450 2.769602 ACTCCCTCCGCTCCTAAATA 57.230 50.000 0.00 0.00 0.00 1.40
2282 2451 3.261818 ACTCCCTCCGCTCCTAAATAT 57.738 47.619 0.00 0.00 0.00 1.28
2283 2452 4.399483 ACTCCCTCCGCTCCTAAATATA 57.601 45.455 0.00 0.00 0.00 0.86
2284 2453 4.748701 ACTCCCTCCGCTCCTAAATATAA 58.251 43.478 0.00 0.00 0.00 0.98
2285 2454 4.773149 ACTCCCTCCGCTCCTAAATATAAG 59.227 45.833 0.00 0.00 0.00 1.73
2286 2455 4.748701 TCCCTCCGCTCCTAAATATAAGT 58.251 43.478 0.00 0.00 0.00 2.24
2287 2456 4.771054 TCCCTCCGCTCCTAAATATAAGTC 59.229 45.833 0.00 0.00 0.00 3.01
2288 2457 4.773149 CCCTCCGCTCCTAAATATAAGTCT 59.227 45.833 0.00 0.00 0.00 3.24
2289 2458 5.246429 CCCTCCGCTCCTAAATATAAGTCTT 59.754 44.000 0.00 0.00 0.00 3.01
2290 2459 6.239629 CCCTCCGCTCCTAAATATAAGTCTTT 60.240 42.308 0.00 0.00 0.00 2.52
2291 2460 7.217906 CCTCCGCTCCTAAATATAAGTCTTTT 58.782 38.462 0.00 0.00 0.00 2.27
2292 2461 7.715686 CCTCCGCTCCTAAATATAAGTCTTTTT 59.284 37.037 0.00 0.00 0.00 1.94
2293 2462 9.760077 CTCCGCTCCTAAATATAAGTCTTTTTA 57.240 33.333 0.00 0.00 0.00 1.52
2294 2463 9.760077 TCCGCTCCTAAATATAAGTCTTTTTAG 57.240 33.333 7.75 7.75 33.47 1.85
2295 2464 9.760077 CCGCTCCTAAATATAAGTCTTTTTAGA 57.240 33.333 13.43 3.76 34.90 2.10
2319 2488 9.314321 AGAGATTTCAATACAAACTACATACGG 57.686 33.333 0.00 0.00 0.00 4.02
2320 2489 9.309516 GAGATTTCAATACAAACTACATACGGA 57.690 33.333 0.00 0.00 0.00 4.69
2321 2490 9.832445 AGATTTCAATACAAACTACATACGGAT 57.168 29.630 0.00 0.00 0.00 4.18
2322 2491 9.864034 GATTTCAATACAAACTACATACGGATG 57.136 33.333 5.94 5.94 39.16 3.51
2324 2493 9.872721 TTTCAATACAAACTACATACGGATGTA 57.127 29.630 19.32 19.32 44.77 2.29
2364 2533 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2365 2534 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2366 2535 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2367 2536 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2368 2537 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2369 2538 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2370 2539 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2371 2540 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2372 2541 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2373 2542 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2374 2543 3.871594 ACTCATTTTGCTCCGTATGTAGC 59.128 43.478 0.00 0.00 39.25 3.58
2375 2544 3.202906 TCATTTTGCTCCGTATGTAGCC 58.797 45.455 0.00 0.00 37.97 3.93
2376 2545 3.118408 TCATTTTGCTCCGTATGTAGCCT 60.118 43.478 0.00 0.00 37.97 4.58
2377 2546 2.596904 TTTGCTCCGTATGTAGCCTC 57.403 50.000 0.00 0.00 37.97 4.70
2378 2547 1.776662 TTGCTCCGTATGTAGCCTCT 58.223 50.000 0.00 0.00 37.97 3.69
2379 2548 1.776662 TGCTCCGTATGTAGCCTCTT 58.223 50.000 0.00 0.00 37.97 2.85
2380 2549 2.940158 TGCTCCGTATGTAGCCTCTTA 58.060 47.619 0.00 0.00 37.97 2.10
2381 2550 3.497332 TGCTCCGTATGTAGCCTCTTAT 58.503 45.455 0.00 0.00 37.97 1.73
2382 2551 3.895656 TGCTCCGTATGTAGCCTCTTATT 59.104 43.478 0.00 0.00 37.97 1.40
2383 2552 4.238514 GCTCCGTATGTAGCCTCTTATTG 58.761 47.826 0.00 0.00 32.40 1.90
2384 2553 4.810790 CTCCGTATGTAGCCTCTTATTGG 58.189 47.826 0.00 0.00 0.00 3.16
2385 2554 4.476297 TCCGTATGTAGCCTCTTATTGGA 58.524 43.478 0.00 0.00 0.00 3.53
2386 2555 4.897076 TCCGTATGTAGCCTCTTATTGGAA 59.103 41.667 0.00 0.00 0.00 3.53
2387 2556 5.542635 TCCGTATGTAGCCTCTTATTGGAAT 59.457 40.000 0.00 0.00 0.00 3.01
2388 2557 5.869888 CCGTATGTAGCCTCTTATTGGAATC 59.130 44.000 0.00 0.00 0.00 2.52
2389 2558 6.295349 CCGTATGTAGCCTCTTATTGGAATCT 60.295 42.308 0.00 0.00 0.00 2.40
2390 2559 6.809196 CGTATGTAGCCTCTTATTGGAATCTC 59.191 42.308 0.00 0.00 0.00 2.75
2391 2560 7.309499 CGTATGTAGCCTCTTATTGGAATCTCT 60.309 40.741 0.00 0.00 0.00 3.10
2392 2561 9.026121 GTATGTAGCCTCTTATTGGAATCTCTA 57.974 37.037 0.00 0.00 0.00 2.43
2393 2562 7.914427 TGTAGCCTCTTATTGGAATCTCTAA 57.086 36.000 0.00 0.00 0.00 2.10
2394 2563 8.319057 TGTAGCCTCTTATTGGAATCTCTAAA 57.681 34.615 0.00 0.00 0.00 1.85
2395 2564 8.768397 TGTAGCCTCTTATTGGAATCTCTAAAA 58.232 33.333 0.00 0.00 0.00 1.52
2396 2565 9.614792 GTAGCCTCTTATTGGAATCTCTAAAAA 57.385 33.333 0.00 0.00 0.00 1.94
2397 2566 8.744568 AGCCTCTTATTGGAATCTCTAAAAAG 57.255 34.615 0.00 0.00 0.00 2.27
2398 2567 7.777440 AGCCTCTTATTGGAATCTCTAAAAAGG 59.223 37.037 0.00 0.00 0.00 3.11
2399 2568 7.469318 GCCTCTTATTGGAATCTCTAAAAAGGC 60.469 40.741 0.00 0.00 0.00 4.35
2400 2569 7.777440 CCTCTTATTGGAATCTCTAAAAAGGCT 59.223 37.037 0.00 0.00 0.00 4.58
2401 2570 9.183368 CTCTTATTGGAATCTCTAAAAAGGCTT 57.817 33.333 0.00 0.00 0.00 4.35
2415 2584 9.333724 TCTAAAAAGGCTTATATTTAGGAACGG 57.666 33.333 21.19 4.97 36.48 4.44
2416 2585 9.333724 CTAAAAAGGCTTATATTTAGGAACGGA 57.666 33.333 16.77 0.00 33.69 4.69
2417 2586 7.803279 AAAAGGCTTATATTTAGGAACGGAG 57.197 36.000 0.00 0.00 0.00 4.63
2418 2587 5.485209 AGGCTTATATTTAGGAACGGAGG 57.515 43.478 0.00 0.00 0.00 4.30
2419 2588 4.286291 AGGCTTATATTTAGGAACGGAGGG 59.714 45.833 0.00 0.00 0.00 4.30
2420 2589 4.285260 GGCTTATATTTAGGAACGGAGGGA 59.715 45.833 0.00 0.00 0.00 4.20
2421 2590 5.480205 GCTTATATTTAGGAACGGAGGGAG 58.520 45.833 0.00 0.00 0.00 4.30
2478 2647 4.702131 CCTGAGTATTTGCTTGGCTTAGTT 59.298 41.667 0.00 0.00 0.00 2.24
2857 3026 8.039538 TCATCTGATATTAGCTAGCCAATCTTG 58.960 37.037 11.83 8.87 0.00 3.02
2858 3027 7.308450 TCTGATATTAGCTAGCCAATCTTGT 57.692 36.000 11.83 0.00 0.00 3.16
2859 3028 7.382110 TCTGATATTAGCTAGCCAATCTTGTC 58.618 38.462 11.83 7.39 0.00 3.18
2860 3029 7.234371 TCTGATATTAGCTAGCCAATCTTGTCT 59.766 37.037 11.83 0.00 0.00 3.41
2892 3073 7.880160 AAATTCACCTGCTTGCTACATATAA 57.120 32.000 0.00 0.00 0.00 0.98
2946 3127 4.874966 AGCTGCTCATTCTATTCAGAACAC 59.125 41.667 0.00 0.00 43.50 3.32
2956 3137 6.109156 TCTATTCAGAACACAGCCTGTTTA 57.891 37.500 0.00 0.00 43.60 2.01
3062 3243 2.186160 CACTGGAAACGCTGGTGCA 61.186 57.895 0.00 0.00 39.64 4.57
3087 3268 4.799428 GTGTTGCTTGCGGTAAGTTAAAAA 59.201 37.500 7.66 0.00 38.70 1.94
3097 3278 6.201234 TGCGGTAAGTTAAAAATTTCTTTGGC 59.799 34.615 0.00 0.00 0.00 4.52
3209 3392 5.964477 TCTAGTGGATTCATAGAAACCCTGT 59.036 40.000 3.98 0.00 0.00 4.00
3411 3594 4.245660 CAGTCGTGTCAATTCCTATGTGT 58.754 43.478 0.00 0.00 0.00 3.72
3428 3611 8.188799 TCCTATGTGTTACTCTGAACTTTATCG 58.811 37.037 0.00 0.00 0.00 2.92
3448 3631 2.799562 CGCTGTCATTTGGCTATCGAGA 60.800 50.000 0.00 0.00 0.00 4.04
3451 3634 4.375272 CTGTCATTTGGCTATCGAGATGT 58.625 43.478 0.00 0.00 0.00 3.06
3500 3694 2.299013 TGTGGATCTGTTGTTCGCTACT 59.701 45.455 0.00 0.00 0.00 2.57
3511 3705 1.015109 TTCGCTACTAGCTCTGGACG 58.985 55.000 6.50 0.00 39.60 4.79
3513 3707 0.028242 CGCTACTAGCTCTGGACGTG 59.972 60.000 6.50 0.00 39.60 4.49
3547 3822 3.634448 CGAGAGAGGTATCCATGTGTTCT 59.366 47.826 0.00 0.00 0.00 3.01
3552 3827 2.239654 AGGTATCCATGTGTTCTGGTGG 59.760 50.000 0.00 0.00 35.19 4.61
3554 3829 2.978156 ATCCATGTGTTCTGGTGGTT 57.022 45.000 0.00 0.00 35.19 3.67
3602 3877 7.094377 GCTACTTTTATCTGTTTGGAATGGTGA 60.094 37.037 0.00 0.00 0.00 4.02
3806 4092 0.663153 GCCAACTTGTTCGTGCTCTT 59.337 50.000 0.00 0.00 0.00 2.85
3900 4189 2.657237 CAGCCCGTTCTTCCTCGT 59.343 61.111 0.00 0.00 0.00 4.18
3968 4257 0.605589 CTCGCTCTGACAACCCTTCT 59.394 55.000 0.00 0.00 0.00 2.85
4031 4320 0.737367 CATCGATATGGGACGCGCAT 60.737 55.000 5.73 4.19 40.13 4.73
4166 4481 3.571401 ACTGTTGCATTTTTGGGAGAGAG 59.429 43.478 0.00 0.00 0.00 3.20
4167 4482 2.892852 TGTTGCATTTTTGGGAGAGAGG 59.107 45.455 0.00 0.00 0.00 3.69
4170 4485 1.005924 GCATTTTTGGGAGAGAGGGGA 59.994 52.381 0.00 0.00 0.00 4.81
4247 4563 1.760613 AGTAAAGATTGATCCCGCCGA 59.239 47.619 0.00 0.00 0.00 5.54
4254 4570 2.455674 TTGATCCCGCCGAGATAATG 57.544 50.000 0.00 0.00 0.00 1.90
4270 4586 5.440610 AGATAATGTTTTTCCTGATCCGCT 58.559 37.500 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 113 1.528309 GCGGAGGAGAGGAGAGGAG 60.528 68.421 0.00 0.00 0.00 3.69
101 114 2.598467 GCGGAGGAGAGGAGAGGA 59.402 66.667 0.00 0.00 0.00 3.71
102 115 2.904866 CGCGGAGGAGAGGAGAGG 60.905 72.222 0.00 0.00 0.00 3.69
103 116 3.591835 GCGCGGAGGAGAGGAGAG 61.592 72.222 8.83 0.00 0.00 3.20
104 117 3.723097 ATGCGCGGAGGAGAGGAGA 62.723 63.158 8.83 0.00 0.00 3.71
197 217 2.100631 GGTCGTGGTTGCAGATCGG 61.101 63.158 0.00 0.00 0.00 4.18
261 281 1.881252 CGGCCGAATCTAACCACCG 60.881 63.158 24.07 0.00 0.00 4.94
262 282 2.178235 GCGGCCGAATCTAACCACC 61.178 63.158 33.48 1.41 0.00 4.61
264 284 2.202824 CGCGGCCGAATCTAACCA 60.203 61.111 33.48 0.00 36.29 3.67
293 313 1.002134 AAACACAGGCAGATCGGGG 60.002 57.895 0.00 0.00 0.00 5.73
304 326 3.623060 AGCATATAACTCCGCAAACACAG 59.377 43.478 0.00 0.00 0.00 3.66
315 337 2.797156 CACGCACAGGAGCATATAACTC 59.203 50.000 0.00 0.00 0.00 3.01
322 344 2.046892 GACCACGCACAGGAGCAT 60.047 61.111 0.00 0.00 0.00 3.79
333 355 2.503375 GACTACCACGCGACCACG 60.503 66.667 15.93 0.00 42.93 4.94
334 356 2.503375 CGACTACCACGCGACCAC 60.503 66.667 15.93 0.00 0.00 4.16
335 357 3.740397 CCGACTACCACGCGACCA 61.740 66.667 15.93 0.00 0.00 4.02
336 358 3.273080 AACCGACTACCACGCGACC 62.273 63.158 15.93 0.00 0.00 4.79
337 359 2.084681 CAACCGACTACCACGCGAC 61.085 63.158 15.93 0.00 0.00 5.19
338 360 2.256158 CAACCGACTACCACGCGA 59.744 61.111 15.93 0.00 0.00 5.87
339 361 2.807895 CCAACCGACTACCACGCG 60.808 66.667 3.53 3.53 0.00 6.01
403 425 0.318614 CACACCCAAAATCACCGCAC 60.319 55.000 0.00 0.00 0.00 5.34
473 495 5.477510 AGTTCTAACTGAGATGCACAGAAG 58.522 41.667 9.59 6.68 37.98 2.85
488 510 6.605849 GGGGACGAAATAAACAAGTTCTAAC 58.394 40.000 0.00 0.00 29.89 2.34
517 539 2.092524 GCAACAAAATTAGCATGGCACG 59.907 45.455 0.00 0.00 0.00 5.34
521 543 2.923020 GGACGCAACAAAATTAGCATGG 59.077 45.455 0.00 0.00 0.00 3.66
526 548 5.178623 TGACAGTAGGACGCAACAAAATTAG 59.821 40.000 0.00 0.00 0.00 1.73
537 559 2.623889 ACTGGATATGACAGTAGGACGC 59.376 50.000 7.66 0.00 46.62 5.19
539 561 3.322254 CCCACTGGATATGACAGTAGGAC 59.678 52.174 13.17 0.00 46.44 3.85
558 580 1.403679 CAGCGACAGAAAACAAACCCA 59.596 47.619 0.00 0.00 0.00 4.51
559 581 1.269051 CCAGCGACAGAAAACAAACCC 60.269 52.381 0.00 0.00 0.00 4.11
565 587 1.264288 CCAAGACCAGCGACAGAAAAC 59.736 52.381 0.00 0.00 0.00 2.43
566 588 1.140052 TCCAAGACCAGCGACAGAAAA 59.860 47.619 0.00 0.00 0.00 2.29
574 596 2.802816 GCTATGTAATCCAAGACCAGCG 59.197 50.000 0.00 0.00 0.00 5.18
579 601 5.233988 CAGCCTAGCTATGTAATCCAAGAC 58.766 45.833 0.00 0.00 36.40 3.01
580 602 4.262635 GCAGCCTAGCTATGTAATCCAAGA 60.263 45.833 0.00 0.00 36.40 3.02
585 607 2.999355 GCTGCAGCCTAGCTATGTAATC 59.001 50.000 28.76 0.00 36.40 1.75
600 622 2.736144 ATCACCAATTGTTGCTGCAG 57.264 45.000 10.11 10.11 0.00 4.41
603 625 3.185594 CAGCAAATCACCAATTGTTGCTG 59.814 43.478 30.23 30.23 40.63 4.41
606 628 3.395639 AGCAGCAAATCACCAATTGTTG 58.604 40.909 4.43 0.00 39.73 3.33
609 631 3.185594 CACAAGCAGCAAATCACCAATTG 59.814 43.478 0.00 0.00 0.00 2.32
614 636 0.675633 ACCACAAGCAGCAAATCACC 59.324 50.000 0.00 0.00 0.00 4.02
615 637 3.855689 ATACCACAAGCAGCAAATCAC 57.144 42.857 0.00 0.00 0.00 3.06
618 640 3.355378 TGCTATACCACAAGCAGCAAAT 58.645 40.909 0.00 0.00 43.56 2.32
619 641 2.789213 TGCTATACCACAAGCAGCAAA 58.211 42.857 0.00 0.00 43.56 3.68
620 642 2.488204 TGCTATACCACAAGCAGCAA 57.512 45.000 0.00 0.00 43.56 3.91
625 647 2.749621 GCCCATATGCTATACCACAAGC 59.250 50.000 0.00 0.00 39.25 4.01
626 648 4.005650 CAGCCCATATGCTATACCACAAG 58.994 47.826 0.00 0.00 40.32 3.16
628 650 2.305635 CCAGCCCATATGCTATACCACA 59.694 50.000 0.00 0.00 40.32 4.17
629 651 2.941415 GCCAGCCCATATGCTATACCAC 60.941 54.545 0.00 0.00 40.32 4.16
630 652 1.281867 GCCAGCCCATATGCTATACCA 59.718 52.381 0.00 0.00 40.32 3.25
631 653 1.281867 TGCCAGCCCATATGCTATACC 59.718 52.381 0.00 0.00 40.32 2.73
632 654 2.787473 TGCCAGCCCATATGCTATAC 57.213 50.000 0.00 0.00 40.32 1.47
633 655 2.684630 GCATGCCAGCCCATATGCTATA 60.685 50.000 6.36 0.00 40.32 1.31
634 656 1.958549 GCATGCCAGCCCATATGCTAT 60.959 52.381 6.36 0.00 40.32 2.97
636 658 1.906824 GCATGCCAGCCCATATGCT 60.907 57.895 6.36 0.00 44.00 3.79
637 659 1.874345 GAGCATGCCAGCCCATATGC 61.874 60.000 15.66 4.90 44.63 3.14
638 660 0.251209 AGAGCATGCCAGCCCATATG 60.251 55.000 15.66 0.00 34.23 1.78
639 661 0.251209 CAGAGCATGCCAGCCCATAT 60.251 55.000 15.66 0.00 34.23 1.78
641 663 2.123854 CAGAGCATGCCAGCCCAT 60.124 61.111 15.66 0.00 34.23 4.00
642 664 4.435970 CCAGAGCATGCCAGCCCA 62.436 66.667 15.66 0.00 34.23 5.36
644 666 1.453762 GAATCCAGAGCATGCCAGCC 61.454 60.000 15.66 1.19 34.23 4.85
646 668 1.164662 CCGAATCCAGAGCATGCCAG 61.165 60.000 15.66 4.21 0.00 4.85
647 669 1.153107 CCGAATCCAGAGCATGCCA 60.153 57.895 15.66 0.00 0.00 4.92
648 670 1.895707 CCCGAATCCAGAGCATGCC 60.896 63.158 15.66 6.03 0.00 4.40
655 696 2.438021 CCATCTAAACCCCGAATCCAGA 59.562 50.000 0.00 0.00 0.00 3.86
663 704 2.297701 CATCAACCCATCTAAACCCCG 58.702 52.381 0.00 0.00 0.00 5.73
669 710 4.716784 AGTCTACTGCATCAACCCATCTAA 59.283 41.667 0.00 0.00 0.00 2.10
687 728 9.020731 TGTAATTGAGATGTACAGAACAGTCTA 57.979 33.333 0.33 0.00 42.70 2.59
688 729 7.896811 TGTAATTGAGATGTACAGAACAGTCT 58.103 34.615 0.33 0.00 42.70 3.24
691 732 8.539770 AGTTGTAATTGAGATGTACAGAACAG 57.460 34.615 0.33 0.00 42.70 3.16
694 735 8.902540 ACAAGTTGTAATTGAGATGTACAGAA 57.097 30.769 6.75 0.00 0.00 3.02
695 736 8.902540 AACAAGTTGTAATTGAGATGTACAGA 57.097 30.769 9.37 0.00 0.00 3.41
703 744 9.872757 GACGAAATAAACAAGTTGTAATTGAGA 57.127 29.630 9.37 0.00 0.00 3.27
704 745 9.113876 GGACGAAATAAACAAGTTGTAATTGAG 57.886 33.333 9.37 11.48 0.00 3.02
705 746 8.077386 GGGACGAAATAAACAAGTTGTAATTGA 58.923 33.333 9.37 0.00 0.00 2.57
706 747 8.079809 AGGGACGAAATAAACAAGTTGTAATTG 58.920 33.333 9.37 4.77 0.00 2.32
707 748 8.079809 CAGGGACGAAATAAACAAGTTGTAATT 58.920 33.333 9.37 9.50 0.00 1.40
708 749 7.229907 ACAGGGACGAAATAAACAAGTTGTAAT 59.770 33.333 9.37 3.47 0.00 1.89
709 750 6.543100 ACAGGGACGAAATAAACAAGTTGTAA 59.457 34.615 9.37 0.91 0.00 2.41
710 751 6.017770 CACAGGGACGAAATAAACAAGTTGTA 60.018 38.462 9.37 0.00 0.00 2.41
711 752 4.885325 ACAGGGACGAAATAAACAAGTTGT 59.115 37.500 1.64 1.64 0.00 3.32
712 753 5.212194 CACAGGGACGAAATAAACAAGTTG 58.788 41.667 0.00 0.00 0.00 3.16
713 754 4.261447 GCACAGGGACGAAATAAACAAGTT 60.261 41.667 0.00 0.00 0.00 2.66
714 755 3.252458 GCACAGGGACGAAATAAACAAGT 59.748 43.478 0.00 0.00 0.00 3.16
715 756 3.502211 AGCACAGGGACGAAATAAACAAG 59.498 43.478 0.00 0.00 0.00 3.16
716 757 3.252215 CAGCACAGGGACGAAATAAACAA 59.748 43.478 0.00 0.00 0.00 2.83
717 758 2.811431 CAGCACAGGGACGAAATAAACA 59.189 45.455 0.00 0.00 0.00 2.83
718 759 2.812011 ACAGCACAGGGACGAAATAAAC 59.188 45.455 0.00 0.00 0.00 2.01
719 760 2.811431 CACAGCACAGGGACGAAATAAA 59.189 45.455 0.00 0.00 0.00 1.40
720 761 2.224426 ACACAGCACAGGGACGAAATAA 60.224 45.455 0.00 0.00 0.00 1.40
721 762 1.346395 ACACAGCACAGGGACGAAATA 59.654 47.619 0.00 0.00 0.00 1.40
722 763 0.108585 ACACAGCACAGGGACGAAAT 59.891 50.000 0.00 0.00 0.00 2.17
723 764 0.531974 GACACAGCACAGGGACGAAA 60.532 55.000 0.00 0.00 0.00 3.46
724 765 1.069090 GACACAGCACAGGGACGAA 59.931 57.895 0.00 0.00 0.00 3.85
725 766 1.471829 ATGACACAGCACAGGGACGA 61.472 55.000 0.00 0.00 0.00 4.20
726 767 1.004560 ATGACACAGCACAGGGACG 60.005 57.895 0.00 0.00 0.00 4.79
727 768 0.250467 ACATGACACAGCACAGGGAC 60.250 55.000 0.00 0.00 0.00 4.46
728 769 0.473755 AACATGACACAGCACAGGGA 59.526 50.000 0.00 0.00 0.00 4.20
729 770 2.183478 TAACATGACACAGCACAGGG 57.817 50.000 0.00 0.00 0.00 4.45
730 771 4.456911 AGAATTAACATGACACAGCACAGG 59.543 41.667 0.00 0.00 0.00 4.00
731 772 5.049198 ACAGAATTAACATGACACAGCACAG 60.049 40.000 0.00 0.00 0.00 3.66
732 773 4.821260 ACAGAATTAACATGACACAGCACA 59.179 37.500 0.00 0.00 0.00 4.57
733 774 5.362556 ACAGAATTAACATGACACAGCAC 57.637 39.130 0.00 0.00 0.00 4.40
734 775 5.761003 CAACAGAATTAACATGACACAGCA 58.239 37.500 0.00 0.00 0.00 4.41
735 776 4.618489 GCAACAGAATTAACATGACACAGC 59.382 41.667 0.00 0.00 0.00 4.40
736 777 5.761003 TGCAACAGAATTAACATGACACAG 58.239 37.500 0.00 0.00 0.00 3.66
737 778 5.764487 TGCAACAGAATTAACATGACACA 57.236 34.783 0.00 0.00 0.00 3.72
765 806 7.798596 ACAGAAAATCACTAAGATATGGCAG 57.201 36.000 0.00 0.00 35.39 4.85
768 809 8.127327 CAGCAACAGAAAATCACTAAGATATGG 58.873 37.037 0.00 0.00 35.39 2.74
772 813 7.446625 AGTTCAGCAACAGAAAATCACTAAGAT 59.553 33.333 0.00 0.00 34.95 2.40
774 815 6.963796 AGTTCAGCAACAGAAAATCACTAAG 58.036 36.000 0.00 0.00 34.60 2.18
780 821 7.704789 AATTCAAGTTCAGCAACAGAAAATC 57.295 32.000 0.00 0.00 34.46 2.17
781 822 8.196771 TGTAATTCAAGTTCAGCAACAGAAAAT 58.803 29.630 0.00 0.00 34.46 1.82
791 832 6.374333 TCCCAACTATGTAATTCAAGTTCAGC 59.626 38.462 0.00 0.00 30.84 4.26
802 843 7.446106 TGTTACTCCATCCCAACTATGTAAT 57.554 36.000 0.00 0.00 0.00 1.89
803 844 6.877668 TGTTACTCCATCCCAACTATGTAA 57.122 37.500 0.00 0.00 0.00 2.41
804 845 6.877668 TTGTTACTCCATCCCAACTATGTA 57.122 37.500 0.00 0.00 0.00 2.29
806 847 7.993183 ACTAATTGTTACTCCATCCCAACTATG 59.007 37.037 0.00 0.00 0.00 2.23
807 848 7.993183 CACTAATTGTTACTCCATCCCAACTAT 59.007 37.037 0.00 0.00 0.00 2.12
808 849 7.181305 TCACTAATTGTTACTCCATCCCAACTA 59.819 37.037 0.00 0.00 0.00 2.24
809 850 6.012858 TCACTAATTGTTACTCCATCCCAACT 60.013 38.462 0.00 0.00 0.00 3.16
810 851 6.177610 TCACTAATTGTTACTCCATCCCAAC 58.822 40.000 0.00 0.00 0.00 3.77
812 853 6.575244 ATCACTAATTGTTACTCCATCCCA 57.425 37.500 0.00 0.00 0.00 4.37
814 855 7.067494 AGCAAATCACTAATTGTTACTCCATCC 59.933 37.037 0.00 0.00 0.00 3.51
815 856 7.989826 AGCAAATCACTAATTGTTACTCCATC 58.010 34.615 0.00 0.00 0.00 3.51
817 858 6.374333 GGAGCAAATCACTAATTGTTACTCCA 59.626 38.462 0.00 0.00 38.89 3.86
818 859 6.599638 AGGAGCAAATCACTAATTGTTACTCC 59.400 38.462 0.00 0.00 39.25 3.85
819 860 7.617041 AGGAGCAAATCACTAATTGTTACTC 57.383 36.000 0.00 0.00 25.85 2.59
820 861 7.448469 ACAAGGAGCAAATCACTAATTGTTACT 59.552 33.333 0.00 0.00 32.99 2.24
821 862 7.538678 CACAAGGAGCAAATCACTAATTGTTAC 59.461 37.037 0.00 0.00 0.00 2.50
823 864 6.449698 CACAAGGAGCAAATCACTAATTGTT 58.550 36.000 0.00 0.00 0.00 2.83
825 866 5.047802 ACCACAAGGAGCAAATCACTAATTG 60.048 40.000 0.00 0.00 38.69 2.32
828 879 3.820467 CACCACAAGGAGCAAATCACTAA 59.180 43.478 0.00 0.00 38.69 2.24
830 881 2.233271 CACCACAAGGAGCAAATCACT 58.767 47.619 0.00 0.00 38.69 3.41
839 890 5.059161 CACCATATGATACACCACAAGGAG 58.941 45.833 3.65 0.00 38.69 3.69
841 892 4.576053 CACACCATATGATACACCACAAGG 59.424 45.833 3.65 0.00 42.21 3.61
852 903 6.096673 TGCTTCGTATACACACCATATGAT 57.903 37.500 3.65 0.00 0.00 2.45
866 917 7.272978 ACAATAATACAGTCCTTGCTTCGTAT 58.727 34.615 0.00 0.00 0.00 3.06
867 918 6.636705 ACAATAATACAGTCCTTGCTTCGTA 58.363 36.000 0.00 0.00 0.00 3.43
868 919 5.488341 ACAATAATACAGTCCTTGCTTCGT 58.512 37.500 0.00 0.00 0.00 3.85
917 996 3.061161 CAGCAGTTTTTCAGCACAAACAC 59.939 43.478 0.00 0.00 35.66 3.32
932 1011 0.975040 TTGCAAACCACCCAGCAGTT 60.975 50.000 0.00 0.00 38.35 3.16
978 1057 3.552890 GCAATCAAACCCCAGAAGTGAAC 60.553 47.826 0.00 0.00 0.00 3.18
1009 1088 1.001048 CACAGCCTTCACCATTGTGTG 60.001 52.381 0.00 0.00 43.26 3.82
1155 1234 2.223947 GGCCTAAACAACAACCAACCAG 60.224 50.000 0.00 0.00 0.00 4.00
1202 1281 1.219393 GAGCCCTTCCTTGAGTCCG 59.781 63.158 0.00 0.00 0.00 4.79
1291 1370 6.202954 ACAATTCGTCTGTTCTCAAAGTAAGG 59.797 38.462 0.00 0.00 0.00 2.69
1295 1374 4.260784 GCACAATTCGTCTGTTCTCAAAGT 60.261 41.667 0.00 0.00 0.00 2.66
1300 1379 2.802816 ACAGCACAATTCGTCTGTTCTC 59.197 45.455 0.00 0.00 34.40 2.87
1313 1392 1.000385 GCACCAATAAGCACAGCACAA 60.000 47.619 0.00 0.00 0.00 3.33
1337 1416 6.126863 AGTGTGGTCCTATGAAAGAAATCA 57.873 37.500 0.00 0.00 0.00 2.57
1347 1426 2.305927 AGGGTTGAAGTGTGGTCCTATG 59.694 50.000 0.00 0.00 0.00 2.23
1348 1427 2.305927 CAGGGTTGAAGTGTGGTCCTAT 59.694 50.000 0.00 0.00 0.00 2.57
1442 1521 6.645884 AGGGTATAAACAAAGTACCATCCA 57.354 37.500 3.52 0.00 39.67 3.41
1454 1533 4.288626 AGTGAGGCAAGAAGGGTATAAACA 59.711 41.667 0.00 0.00 0.00 2.83
1552 1631 4.096732 ACAAAAAGTGAACTGTCAGTGC 57.903 40.909 6.18 4.89 37.50 4.40
1569 1648 0.550914 AGCAACACCTGGGAGACAAA 59.449 50.000 0.00 0.00 0.00 2.83
1590 1669 5.240183 ACATGGCAGTCAGTAATATTGATGC 59.760 40.000 0.00 9.75 32.89 3.91
1598 1677 4.220693 TGCTTACATGGCAGTCAGTAAT 57.779 40.909 0.00 0.00 34.56 1.89
1859 2022 5.728471 TCTGCAAAAACAACTTCATTCCAA 58.272 33.333 0.00 0.00 0.00 3.53
1946 2109 9.151471 GCTCTTCAAACTTACTCATACAACATA 57.849 33.333 0.00 0.00 0.00 2.29
1958 2121 2.224793 ACCCCAGGCTCTTCAAACTTAC 60.225 50.000 0.00 0.00 0.00 2.34
1978 2141 8.205131 TCCAAAAGTAGACTAAAGTTCACAAC 57.795 34.615 0.00 0.00 0.00 3.32
2199 2368 8.507249 GCATTTTTCCCTATAGACATGTGATAC 58.493 37.037 1.15 0.00 0.00 2.24
2237 2406 2.674357 CTGCATGCCAAATGCCTAAAAC 59.326 45.455 16.68 0.00 43.94 2.43
2261 2430 2.769602 ATTTAGGAGCGGAGGGAGTA 57.230 50.000 0.00 0.00 0.00 2.59
2262 2431 2.769602 TATTTAGGAGCGGAGGGAGT 57.230 50.000 0.00 0.00 0.00 3.85
2263 2432 4.773149 ACTTATATTTAGGAGCGGAGGGAG 59.227 45.833 0.00 0.00 0.00 4.30
2264 2433 4.748701 ACTTATATTTAGGAGCGGAGGGA 58.251 43.478 0.00 0.00 0.00 4.20
2265 2434 4.773149 AGACTTATATTTAGGAGCGGAGGG 59.227 45.833 0.00 0.00 0.00 4.30
2266 2435 5.986501 AGACTTATATTTAGGAGCGGAGG 57.013 43.478 0.00 0.00 0.00 4.30
2267 2436 8.664211 AAAAAGACTTATATTTAGGAGCGGAG 57.336 34.615 0.00 0.00 0.00 4.63
2268 2437 9.760077 CTAAAAAGACTTATATTTAGGAGCGGA 57.240 33.333 8.91 0.00 33.69 5.54
2269 2438 9.760077 TCTAAAAAGACTTATATTTAGGAGCGG 57.240 33.333 13.94 0.00 36.48 5.52
2293 2462 9.314321 CCGTATGTAGTTTGTATTGAAATCTCT 57.686 33.333 0.00 0.00 0.00 3.10
2294 2463 9.309516 TCCGTATGTAGTTTGTATTGAAATCTC 57.690 33.333 0.00 0.00 0.00 2.75
2295 2464 9.832445 ATCCGTATGTAGTTTGTATTGAAATCT 57.168 29.630 0.00 0.00 0.00 2.40
2296 2465 9.864034 CATCCGTATGTAGTTTGTATTGAAATC 57.136 33.333 0.00 0.00 0.00 2.17
2297 2466 9.391006 ACATCCGTATGTAGTTTGTATTGAAAT 57.609 29.630 0.00 0.00 44.66 2.17
2298 2467 8.780846 ACATCCGTATGTAGTTTGTATTGAAA 57.219 30.769 0.00 0.00 44.66 2.69
2342 2511 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2343 2512 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2344 2513 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2345 2514 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2346 2515 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2347 2516 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2348 2517 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2349 2518 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2350 2519 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2351 2520 4.260375 GCTACATACGGAGCAAAATGAGTG 60.260 45.833 0.00 0.00 38.62 3.51
2352 2521 3.871594 GCTACATACGGAGCAAAATGAGT 59.128 43.478 0.00 0.00 38.62 3.41
2353 2522 3.248602 GGCTACATACGGAGCAAAATGAG 59.751 47.826 0.00 0.00 40.64 2.90
2354 2523 3.118408 AGGCTACATACGGAGCAAAATGA 60.118 43.478 0.00 0.00 40.64 2.57
2355 2524 3.206150 AGGCTACATACGGAGCAAAATG 58.794 45.455 0.00 0.00 40.64 2.32
2356 2525 3.134804 AGAGGCTACATACGGAGCAAAAT 59.865 43.478 0.00 0.00 40.64 1.82
2357 2526 2.500098 AGAGGCTACATACGGAGCAAAA 59.500 45.455 0.00 0.00 40.64 2.44
2358 2527 2.108168 AGAGGCTACATACGGAGCAAA 58.892 47.619 0.00 0.00 40.64 3.68
2359 2528 1.776662 AGAGGCTACATACGGAGCAA 58.223 50.000 0.00 0.00 40.64 3.91
2360 2529 1.776662 AAGAGGCTACATACGGAGCA 58.223 50.000 0.00 0.00 40.64 4.26
2361 2530 4.238514 CAATAAGAGGCTACATACGGAGC 58.761 47.826 0.00 0.00 38.00 4.70
2362 2531 4.523173 TCCAATAAGAGGCTACATACGGAG 59.477 45.833 0.00 0.00 0.00 4.63
2363 2532 4.476297 TCCAATAAGAGGCTACATACGGA 58.524 43.478 0.00 0.00 0.00 4.69
2364 2533 4.866508 TCCAATAAGAGGCTACATACGG 57.133 45.455 0.00 0.00 0.00 4.02
2365 2534 6.692486 AGATTCCAATAAGAGGCTACATACG 58.308 40.000 0.00 0.00 0.00 3.06
2366 2535 7.902087 AGAGATTCCAATAAGAGGCTACATAC 58.098 38.462 0.00 0.00 0.00 2.39
2367 2536 9.601810 TTAGAGATTCCAATAAGAGGCTACATA 57.398 33.333 0.00 0.00 0.00 2.29
2368 2537 8.497910 TTAGAGATTCCAATAAGAGGCTACAT 57.502 34.615 0.00 0.00 0.00 2.29
2369 2538 7.914427 TTAGAGATTCCAATAAGAGGCTACA 57.086 36.000 0.00 0.00 0.00 2.74
2370 2539 9.614792 TTTTTAGAGATTCCAATAAGAGGCTAC 57.385 33.333 0.00 0.00 0.00 3.58
2371 2540 9.838339 CTTTTTAGAGATTCCAATAAGAGGCTA 57.162 33.333 0.00 0.00 0.00 3.93
2372 2541 7.777440 CCTTTTTAGAGATTCCAATAAGAGGCT 59.223 37.037 0.00 0.00 0.00 4.58
2373 2542 7.469318 GCCTTTTTAGAGATTCCAATAAGAGGC 60.469 40.741 0.00 0.00 34.29 4.70
2374 2543 7.777440 AGCCTTTTTAGAGATTCCAATAAGAGG 59.223 37.037 0.00 0.00 0.00 3.69
2375 2544 8.744568 AGCCTTTTTAGAGATTCCAATAAGAG 57.255 34.615 0.00 0.00 0.00 2.85
2389 2558 9.333724 CCGTTCCTAAATATAAGCCTTTTTAGA 57.666 33.333 8.15 0.00 34.90 2.10
2390 2559 9.333724 TCCGTTCCTAAATATAAGCCTTTTTAG 57.666 33.333 1.71 1.71 33.47 1.85
2391 2560 9.333724 CTCCGTTCCTAAATATAAGCCTTTTTA 57.666 33.333 0.00 0.00 0.00 1.52
2392 2561 7.284716 CCTCCGTTCCTAAATATAAGCCTTTTT 59.715 37.037 0.00 0.00 0.00 1.94
2393 2562 6.771267 CCTCCGTTCCTAAATATAAGCCTTTT 59.229 38.462 0.00 0.00 0.00 2.27
2394 2563 6.296803 CCTCCGTTCCTAAATATAAGCCTTT 58.703 40.000 0.00 0.00 0.00 3.11
2395 2564 5.221864 CCCTCCGTTCCTAAATATAAGCCTT 60.222 44.000 0.00 0.00 0.00 4.35
2396 2565 4.286291 CCCTCCGTTCCTAAATATAAGCCT 59.714 45.833 0.00 0.00 0.00 4.58
2397 2566 4.285260 TCCCTCCGTTCCTAAATATAAGCC 59.715 45.833 0.00 0.00 0.00 4.35
2398 2567 5.011840 ACTCCCTCCGTTCCTAAATATAAGC 59.988 44.000 0.00 0.00 0.00 3.09
2399 2568 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2400 2569 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
2401 2570 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
2402 2571 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
2403 2572 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
2404 2573 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
2405 2574 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
2406 2575 3.053095 ACATCTACTCCCTCCGTTCCTAA 60.053 47.826 0.00 0.00 0.00 2.69
2407 2576 2.512896 ACATCTACTCCCTCCGTTCCTA 59.487 50.000 0.00 0.00 0.00 2.94
2408 2577 1.288335 ACATCTACTCCCTCCGTTCCT 59.712 52.381 0.00 0.00 0.00 3.36
2409 2578 1.777941 ACATCTACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
2410 2579 4.583489 TCATAACATCTACTCCCTCCGTTC 59.417 45.833 0.00 0.00 0.00 3.95
2411 2580 4.543689 TCATAACATCTACTCCCTCCGTT 58.456 43.478 0.00 0.00 0.00 4.44
2412 2581 4.180377 TCATAACATCTACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
2413 2582 5.730296 AATCATAACATCTACTCCCTCCG 57.270 43.478 0.00 0.00 0.00 4.63
2414 2583 8.816894 TCATAAATCATAACATCTACTCCCTCC 58.183 37.037 0.00 0.00 0.00 4.30
2478 2647 1.538634 GCCAAAGCAACACAAGCATCA 60.539 47.619 0.00 0.00 39.53 3.07
2634 2803 9.077885 TGTTACTGTAGCATCACATCATAGATA 57.922 33.333 0.00 0.00 0.00 1.98
2777 2946 8.342634 GCTCTAAACAATACAGTGAACAGAAAA 58.657 33.333 0.00 0.00 0.00 2.29
2857 3026 7.467623 CAAGCAGGTGAATTTACAGATAAGAC 58.532 38.462 2.50 0.00 0.00 3.01
2858 3027 6.094048 GCAAGCAGGTGAATTTACAGATAAGA 59.906 38.462 2.50 0.00 0.00 2.10
2859 3028 6.094603 AGCAAGCAGGTGAATTTACAGATAAG 59.905 38.462 2.50 0.00 0.00 1.73
2860 3029 5.945784 AGCAAGCAGGTGAATTTACAGATAA 59.054 36.000 2.50 0.00 0.00 1.75
2946 3127 5.782047 TCCAAATCAATGTTAAACAGGCTG 58.218 37.500 14.16 14.16 0.00 4.85
2956 3137 6.131264 TCATGCCTCTATCCAAATCAATGTT 58.869 36.000 0.00 0.00 0.00 2.71
2986 3167 3.063452 CGGACAGTAATGGTTACATGTGC 59.937 47.826 9.11 0.81 38.60 4.57
2987 3168 4.092821 CACGGACAGTAATGGTTACATGTG 59.907 45.833 9.11 0.00 38.60 3.21
3062 3243 0.812412 ACTTACCGCAAGCAACACGT 60.812 50.000 0.00 0.00 37.83 4.49
3209 3392 4.813750 TCATCAGAACAGAAGAGATGCA 57.186 40.909 0.00 0.00 36.81 3.96
3309 3492 3.509442 TGCATTCTGAAAAGGTTCCCAT 58.491 40.909 0.00 0.00 32.28 4.00
3391 3574 5.867716 AGTAACACATAGGAATTGACACGAC 59.132 40.000 0.00 0.00 0.00 4.34
3411 3594 6.020971 TGACAGCGATAAAGTTCAGAGTAA 57.979 37.500 0.00 0.00 0.00 2.24
3428 3611 2.826428 TCTCGATAGCCAAATGACAGC 58.174 47.619 0.00 0.00 0.00 4.40
3448 3631 3.118261 ACAGAACTGTTCCAGTCACACAT 60.118 43.478 16.48 0.00 44.62 3.21
3451 3634 2.499693 TGACAGAACTGTTCCAGTCACA 59.500 45.455 28.02 16.11 44.62 3.58
3474 3657 2.290367 CGAACAACAGATCCACAAGCAA 59.710 45.455 0.00 0.00 0.00 3.91
3500 3694 3.151554 TCTGTAAACACGTCCAGAGCTA 58.848 45.455 0.00 0.00 30.80 3.32
3511 3705 5.048507 ACCTCTCTCGTTTTCTGTAAACAC 58.951 41.667 9.95 0.00 45.20 3.32
3513 3707 6.530887 GGATACCTCTCTCGTTTTCTGTAAAC 59.469 42.308 0.37 0.37 42.20 2.01
3533 3727 3.350219 ACCACCAGAACACATGGATAC 57.650 47.619 0.00 0.00 40.51 2.24
3535 3729 2.376518 AGAACCACCAGAACACATGGAT 59.623 45.455 0.00 0.00 40.51 3.41
3574 3849 8.107095 ACCATTCCAAACAGATAAAAGTAGCTA 58.893 33.333 0.00 0.00 0.00 3.32
3602 3877 4.873827 TCTGTTTAGTTTCACTTTGCGTCT 59.126 37.500 0.00 0.00 0.00 4.18
3629 3904 1.153429 GTGCCACCGTGTAGGATCC 60.153 63.158 2.48 2.48 45.00 3.36
3764 4042 4.783621 TCTGCGTGCTGGCCATCC 62.784 66.667 5.51 0.18 0.00 3.51
3806 4092 0.608035 GTTGCCGTCAATTGGGAGGA 60.608 55.000 15.59 0.49 34.29 3.71
3839 4125 4.424566 CCACACCATTGCCGCTGC 62.425 66.667 0.00 0.00 38.26 5.25
3968 4257 1.807771 AAGTAGTCGGGGTCCCTGGA 61.808 60.000 17.33 7.49 0.00 3.86
4057 4358 3.262420 ACCTGTTGCTATTGACGATCAC 58.738 45.455 0.00 0.00 0.00 3.06
4058 4359 3.610040 ACCTGTTGCTATTGACGATCA 57.390 42.857 0.00 0.00 0.00 2.92
4166 4481 2.438434 CACGGTTGCCATCTCCCC 60.438 66.667 0.00 0.00 0.00 4.81
4167 4482 2.270874 ATCCACGGTTGCCATCTCCC 62.271 60.000 0.00 0.00 0.00 4.30
4170 4485 0.327924 TCAATCCACGGTTGCCATCT 59.672 50.000 0.00 0.00 0.00 2.90
4247 4563 5.440610 AGCGGATCAGGAAAAACATTATCT 58.559 37.500 0.00 0.00 0.00 1.98
4254 4570 3.743886 CGTTTAGCGGATCAGGAAAAAC 58.256 45.455 0.00 0.00 36.85 2.43



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.