Multiple sequence alignment - TraesCS2A01G121100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G121100 chr2A 100.000 4574 0 0 1 4574 70973650 70978223 0.000000e+00 8447
1 TraesCS2A01G121100 chr2D 91.916 1571 74 17 2220 3758 72163458 72165007 0.000000e+00 2148
2 TraesCS2A01G121100 chr2D 88.618 1766 117 39 475 2203 72161753 72163471 0.000000e+00 2071
3 TraesCS2A01G121100 chr2D 93.521 463 23 6 1 460 72161242 72161700 0.000000e+00 682
4 TraesCS2A01G121100 chr2D 85.930 661 64 12 3757 4402 72165316 72165962 0.000000e+00 678
5 TraesCS2A01G121100 chr2B 91.252 1566 74 32 2220 3758 108796458 108797987 0.000000e+00 2074
6 TraesCS2A01G121100 chr2B 86.066 1787 123 45 475 2203 108794753 108796471 0.000000e+00 1805
7 TraesCS2A01G121100 chr2B 84.937 478 52 8 3757 4228 108798265 108798728 2.490000e-127 466
8 TraesCS2A01G121100 chr2B 84.000 300 30 12 106 389 108793495 108793792 5.830000e-69 272
9 TraesCS2A01G121100 chr2B 84.574 188 25 3 1804 1990 17385491 17385675 2.810000e-42 183
10 TraesCS2A01G121100 chr2B 83.234 167 19 6 4245 4402 108798715 108798881 1.330000e-30 145
11 TraesCS2A01G121100 chr3A 77.500 320 38 20 1813 2130 496225332 496225045 1.320000e-35 161
12 TraesCS2A01G121100 chr6A 80.660 212 30 6 1804 2013 365825196 365825398 2.200000e-33 154
13 TraesCS2A01G121100 chr1D 82.734 139 18 6 1874 2010 485387649 485387783 8.040000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G121100 chr2A 70973650 70978223 4573 False 8447.00 8447 100.00000 1 4574 1 chr2A.!!$F1 4573
1 TraesCS2A01G121100 chr2D 72161242 72165962 4720 False 1394.75 2148 89.99625 1 4402 4 chr2D.!!$F1 4401
2 TraesCS2A01G121100 chr2B 108793495 108798881 5386 False 952.40 2074 85.89780 106 4402 5 chr2B.!!$F2 4296

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
470 491 0.533032 AAAACCACCAAACCACCACG 59.467 50.0 0.00 0.00 0.00 4.94 F
1216 2166 0.108804 ACGACGCAGGTGAGGTTATG 60.109 55.0 0.00 0.00 0.00 1.90 F
2775 3786 0.035630 CCAAGAGCTGGTCTTCAGGG 60.036 60.0 18.45 13.36 44.28 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1589 2558 0.249955 AGAGCAGAGAAGAAGCAGGC 59.750 55.0 0.00 0.0 0.00 4.85 R
3201 4212 0.037232 CCGAGAACAGGTCCTTGGTC 60.037 60.0 0.00 0.0 34.96 4.02 R
4546 5931 0.033781 GCACATGGGCTTTTCTTGCA 59.966 50.0 14.19 0.0 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.163804 ACAAATATCGCAAGCATCGTTAACA 60.164 36.000 6.39 0.00 37.18 2.41
39 40 6.177610 AGCATCGTTAACAGGGAGAAAATAA 58.822 36.000 6.39 0.00 0.00 1.40
76 77 1.644337 GGAGAAAATTACCCACCCCCT 59.356 52.381 0.00 0.00 0.00 4.79
77 78 2.357881 GGAGAAAATTACCCACCCCCTC 60.358 54.545 0.00 0.00 0.00 4.30
84 88 4.455137 CCCACCCCCTCCTCCCAT 62.455 72.222 0.00 0.00 0.00 4.00
171 184 2.047844 CCATGATAGCCCCTCGCG 60.048 66.667 0.00 0.00 44.76 5.87
232 245 1.386533 GTATGGACGAGGGACTTCGA 58.613 55.000 10.84 0.00 41.55 3.71
260 273 6.047839 AGAGATAAGGATGATAGGGAAGAGGT 59.952 42.308 0.00 0.00 0.00 3.85
286 300 1.665916 CACAGAGAGGGCACACGTG 60.666 63.158 15.48 15.48 0.00 4.49
389 410 7.430793 TCAATTGTTGCATGCACGTTAATATAC 59.569 33.333 22.58 13.09 0.00 1.47
460 481 5.604650 ACATTAATTTGGGAGAAAACCACCA 59.395 36.000 0.00 0.00 37.82 4.17
461 482 6.100424 ACATTAATTTGGGAGAAAACCACCAA 59.900 34.615 0.00 0.00 40.94 3.67
464 485 1.783071 TGGGAGAAAACCACCAAACC 58.217 50.000 0.00 0.00 31.83 3.27
465 486 1.007238 TGGGAGAAAACCACCAAACCA 59.993 47.619 0.00 0.00 31.83 3.67
466 487 1.411246 GGGAGAAAACCACCAAACCAC 59.589 52.381 0.00 0.00 0.00 4.16
468 489 2.104170 GAGAAAACCACCAAACCACCA 58.896 47.619 0.00 0.00 0.00 4.17
469 490 1.828595 AGAAAACCACCAAACCACCAC 59.171 47.619 0.00 0.00 0.00 4.16
470 491 0.533032 AAAACCACCAAACCACCACG 59.467 50.000 0.00 0.00 0.00 4.94
473 494 2.199652 CCACCAAACCACCACGCAT 61.200 57.895 0.00 0.00 0.00 4.73
483 1396 2.106332 CCACGCATACGAGGGACC 59.894 66.667 0.00 0.00 45.16 4.46
513 1426 3.700038 GAGATAAGGACGACAGGGAAGAA 59.300 47.826 0.00 0.00 0.00 2.52
567 1480 2.350895 CGGGAGGTGCCATTGACA 59.649 61.111 0.00 0.00 38.95 3.58
568 1481 1.077501 CGGGAGGTGCCATTGACAT 60.078 57.895 0.00 0.00 38.95 3.06
587 1500 1.290203 TGAGCGAGAAATCAATCGGC 58.710 50.000 0.00 0.00 39.31 5.54
594 1507 3.621794 GAGAAATCAATCGGCCGAATTG 58.378 45.455 34.66 31.07 0.00 2.32
621 1534 4.374399 GCTTCCCATATTTCTTTGGCATG 58.626 43.478 0.00 0.00 0.00 4.06
639 1552 3.719924 CATGTTTCCAACTGTTGCATGT 58.280 40.909 20.95 4.16 0.00 3.21
667 1580 7.483691 CGTTAACATAACAGGCAGAAAATTACC 59.516 37.037 6.39 0.00 0.00 2.85
668 1581 6.909550 AACATAACAGGCAGAAAATTACCA 57.090 33.333 0.00 0.00 0.00 3.25
688 1601 5.445964 ACCACCTACCAATATTTCCACATC 58.554 41.667 0.00 0.00 0.00 3.06
702 1615 3.491342 TCCACATCAATTCGGGACAAAA 58.509 40.909 0.00 0.00 0.00 2.44
703 1616 3.891977 TCCACATCAATTCGGGACAAAAA 59.108 39.130 0.00 0.00 0.00 1.94
744 1657 3.398954 TTCCGAGCACGCAAATTAATC 57.601 42.857 0.00 0.00 38.29 1.75
745 1658 1.326245 TCCGAGCACGCAAATTAATCG 59.674 47.619 0.00 0.00 38.29 3.34
770 1683 2.277084 CTTATCGTGCACCCCTACAAC 58.723 52.381 12.15 0.00 0.00 3.32
778 1691 2.267961 CCCCTACAACCGTGAGCC 59.732 66.667 0.00 0.00 0.00 4.70
783 1696 1.282248 CTACAACCGTGAGCCGTGTG 61.282 60.000 0.00 0.00 33.66 3.82
784 1697 4.012895 CAACCGTGAGCCGTGTGC 62.013 66.667 0.00 0.00 41.71 4.57
838 1766 3.902063 CACGATTCACGCTCGCCG 61.902 66.667 0.00 0.00 46.94 6.46
880 1830 1.598701 AAGGAAAGCAGCAATCGGGC 61.599 55.000 0.00 0.00 0.00 6.13
899 1849 4.151582 CCCGGTAATGGACGCCGT 62.152 66.667 0.00 0.00 43.56 5.68
1063 2013 4.722700 TCCTGAAAGCTGCGCCCC 62.723 66.667 4.18 0.00 0.00 5.80
1080 2030 4.760047 CCCCTTGTCCGTCCGCTG 62.760 72.222 0.00 0.00 0.00 5.18
1102 2052 3.249837 AAAGAAGCGGTCCGGTCCC 62.250 63.158 17.75 11.75 36.27 4.46
1209 2159 3.207547 CTCCACACGACGCAGGTGA 62.208 63.158 14.23 0.63 38.73 4.02
1213 2163 2.029073 CACGACGCAGGTGAGGTT 59.971 61.111 0.00 0.00 37.60 3.50
1216 2166 0.108804 ACGACGCAGGTGAGGTTATG 60.109 55.000 0.00 0.00 0.00 1.90
1285 2242 2.392181 CCGCGGCGGTTGTTCATTA 61.392 57.895 32.14 0.00 42.73 1.90
1292 2261 3.058501 CGGCGGTTGTTCATTACTTTCTT 60.059 43.478 0.00 0.00 0.00 2.52
1318 2287 1.302752 TTGCTGATGAACTGCGGCT 60.303 52.632 0.00 0.00 44.53 5.52
1320 2289 2.789917 CTGATGAACTGCGGCTGC 59.210 61.111 11.65 11.65 43.20 5.25
1321 2290 1.744368 CTGATGAACTGCGGCTGCT 60.744 57.895 20.27 0.00 43.34 4.24
1322 2291 1.978712 CTGATGAACTGCGGCTGCTG 61.979 60.000 21.56 21.56 44.78 4.41
1332 2301 4.332637 GGCTGCTGTGCCGTGTTG 62.333 66.667 0.00 0.00 43.74 3.33
1333 2302 4.988486 GCTGCTGTGCCGTGTTGC 62.988 66.667 0.00 0.00 0.00 4.17
1334 2303 4.671549 CTGCTGTGCCGTGTTGCG 62.672 66.667 0.00 0.00 40.95 4.85
1405 2374 1.135689 CCGTTGGAGCTCCGATTTTTG 60.136 52.381 25.86 12.80 39.43 2.44
1408 2377 0.965363 TGGAGCTCCGATTTTTGGGC 60.965 55.000 27.43 0.00 39.43 5.36
1414 2383 0.965363 TCCGATTTTTGGGCCTCTGC 60.965 55.000 4.53 0.00 0.00 4.26
1417 2386 0.820226 GATTTTTGGGCCTCTGCTCC 59.180 55.000 4.53 0.00 37.06 4.70
1425 2394 2.182030 CCTCTGCTCCGTTCGTCC 59.818 66.667 0.00 0.00 0.00 4.79
1435 2404 3.731089 CTCCGTTCGTCCTAGACTAGAT 58.269 50.000 11.27 0.00 0.00 1.98
1436 2405 4.128643 CTCCGTTCGTCCTAGACTAGATT 58.871 47.826 11.27 0.00 0.00 2.40
1437 2406 3.875727 TCCGTTCGTCCTAGACTAGATTG 59.124 47.826 11.27 0.35 0.00 2.67
1438 2407 3.003482 CCGTTCGTCCTAGACTAGATTGG 59.997 52.174 11.27 0.00 0.00 3.16
1439 2408 3.626670 CGTTCGTCCTAGACTAGATTGGT 59.373 47.826 11.27 0.00 0.00 3.67
1440 2409 4.096081 CGTTCGTCCTAGACTAGATTGGTT 59.904 45.833 11.27 0.00 0.00 3.67
1441 2410 5.392811 CGTTCGTCCTAGACTAGATTGGTTT 60.393 44.000 11.27 0.00 0.00 3.27
1442 2411 5.578005 TCGTCCTAGACTAGATTGGTTTG 57.422 43.478 11.27 0.00 0.00 2.93
1443 2412 4.401519 TCGTCCTAGACTAGATTGGTTTGG 59.598 45.833 11.27 0.00 0.00 3.28
1444 2413 4.159879 CGTCCTAGACTAGATTGGTTTGGT 59.840 45.833 11.27 0.00 0.00 3.67
1476 2445 2.128274 CACCGCGTCGTCGTTTTG 60.128 61.111 4.92 0.00 39.49 2.44
1485 2454 3.843510 GCGTCGTCGTTTTGAATCTGTTT 60.844 43.478 3.66 0.00 39.49 2.83
1493 2462 5.048782 TCGTTTTGAATCTGTTTGGATCTGG 60.049 40.000 0.00 0.00 0.00 3.86
1497 2466 2.322355 ATCTGTTTGGATCTGGCGAG 57.678 50.000 0.00 0.00 0.00 5.03
1528 2497 2.595750 TACTGGATTTGTGGGTTGGG 57.404 50.000 0.00 0.00 0.00 4.12
1591 2560 2.694628 TGGAGTCATGCATATTTTGGCC 59.305 45.455 0.00 0.00 0.00 5.36
1595 2569 2.101917 GTCATGCATATTTTGGCCTGCT 59.898 45.455 12.97 0.00 35.66 4.24
1694 2673 1.602668 GCCTTGCGTTTTCAATGCTCA 60.603 47.619 2.55 0.00 43.78 4.26
1708 2687 6.005583 TCAATGCTCATGAACTTTCTTCAC 57.994 37.500 0.00 0.00 0.00 3.18
1730 2709 4.229876 CGGTTCCAAATCTTCTCTTTTGC 58.770 43.478 0.00 0.00 32.68 3.68
1758 2737 4.116961 TGTTGTCTCGTGTTCTTGTAAGG 58.883 43.478 0.00 0.00 0.00 2.69
1803 2782 2.560542 TCCATTTGTTTTGTCCATCCCG 59.439 45.455 0.00 0.00 0.00 5.14
1872 2851 0.322277 AGATGGTGCACAAGGAGCTG 60.322 55.000 20.43 0.00 34.40 4.24
1965 2944 2.907917 CCTCTCGCTCCCTACCCG 60.908 72.222 0.00 0.00 0.00 5.28
1990 2976 3.054361 ACTCCCCAGTGGATGTTGTTATC 60.054 47.826 11.95 0.00 44.07 1.75
1996 2982 4.500127 CAGTGGATGTTGTTATCACCGTA 58.500 43.478 0.00 0.00 0.00 4.02
2032 3018 1.743996 GGACTGAACCTGGATCTTGC 58.256 55.000 0.00 0.00 0.00 4.01
2140 3126 4.101585 TCTGGCCATACTACTTTCCATCTG 59.898 45.833 5.51 0.00 0.00 2.90
2171 3157 3.255642 CCAACGGTCAATTTCATCTTGGT 59.744 43.478 0.00 0.00 0.00 3.67
2173 3159 4.021102 ACGGTCAATTTCATCTTGGTCT 57.979 40.909 0.00 0.00 0.00 3.85
2174 3160 4.398319 ACGGTCAATTTCATCTTGGTCTT 58.602 39.130 0.00 0.00 0.00 3.01
2175 3161 5.556915 ACGGTCAATTTCATCTTGGTCTTA 58.443 37.500 0.00 0.00 0.00 2.10
2176 3162 6.001460 ACGGTCAATTTCATCTTGGTCTTAA 58.999 36.000 0.00 0.00 0.00 1.85
2178 3164 6.149474 CGGTCAATTTCATCTTGGTCTTAACT 59.851 38.462 0.00 0.00 0.00 2.24
2180 3166 8.023706 GGTCAATTTCATCTTGGTCTTAACTTC 58.976 37.037 0.00 0.00 0.00 3.01
2184 3170 9.579932 AATTTCATCTTGGTCTTAACTTCTCTT 57.420 29.630 0.00 0.00 0.00 2.85
2188 3174 9.712305 TCATCTTGGTCTTAACTTCTCTTTTAG 57.288 33.333 0.00 0.00 0.00 1.85
2189 3175 9.712305 CATCTTGGTCTTAACTTCTCTTTTAGA 57.288 33.333 0.00 0.00 0.00 2.10
2254 3240 2.183811 CTCCAGCCTCTGTCTGCG 59.816 66.667 0.00 0.00 0.00 5.18
2264 3250 0.386858 TCTGTCTGCGTCGTTACAGC 60.387 55.000 14.84 3.67 39.33 4.40
2266 3252 0.038618 TGTCTGCGTCGTTACAGCAT 60.039 50.000 0.00 0.00 40.35 3.79
2332 3322 8.812329 CAAGTTCACAATATTACTCTAGCACTC 58.188 37.037 0.00 0.00 0.00 3.51
2373 3365 7.175990 TGACATATGCAATCTTGTGATGCATAT 59.824 33.333 20.74 20.74 46.33 1.78
2374 3366 8.570068 ACATATGCAATCTTGTGATGCATATA 57.430 30.769 24.01 8.11 45.32 0.86
2379 3371 6.938030 TGCAATCTTGTGATGCATATAGATCA 59.062 34.615 0.00 0.00 34.39 2.92
2403 3395 2.684001 TGGCCTGGTAATTCTGTACG 57.316 50.000 3.32 0.00 0.00 3.67
2464 3456 5.992729 TGTTTTTACAGCACGGATAACTTC 58.007 37.500 0.00 0.00 0.00 3.01
2465 3457 5.527951 TGTTTTTACAGCACGGATAACTTCA 59.472 36.000 0.00 0.00 0.00 3.02
2481 3492 8.793592 GGATAACTTCACCTTCACTAATTGTTT 58.206 33.333 0.00 0.00 0.00 2.83
2495 3506 7.014230 TCACTAATTGTTTTCTTCCTTCCCTTG 59.986 37.037 0.00 0.00 0.00 3.61
2550 3561 2.741228 GCTCAAGCTGATCGACCAAGAT 60.741 50.000 0.00 0.00 38.21 2.40
2595 3606 4.389077 GCTGAAATGTACTACAAGAAGCGT 59.611 41.667 0.00 0.00 0.00 5.07
2598 3609 4.530710 AATGTACTACAAGAAGCGTCCA 57.469 40.909 0.00 0.00 0.00 4.02
2775 3786 0.035630 CCAAGAGCTGGTCTTCAGGG 60.036 60.000 18.45 13.36 44.28 4.45
2853 3864 3.697045 CCTATGACTCCGAGTCTGAAGTT 59.303 47.826 25.37 9.09 45.27 2.66
2862 3873 2.611518 GAGTCTGAAGTTGATGACCCG 58.388 52.381 0.00 0.00 0.00 5.28
2889 3900 2.170187 AGAGCATGATGAGAAGGTGTCC 59.830 50.000 0.00 0.00 0.00 4.02
2972 3983 0.176680 GCGGAGATCAAGAGGCTCAA 59.823 55.000 18.26 1.72 0.00 3.02
3147 4158 2.538141 CCTCAAGAGCCCCAACCCA 61.538 63.158 0.00 0.00 0.00 4.51
3240 4251 1.896660 GAAGCTGTTCACGGGCCAA 60.897 57.895 4.39 0.00 32.36 4.52
3250 4261 3.130819 CGGGCCAACGCAAGCATA 61.131 61.111 4.39 0.00 45.62 3.14
3251 4262 2.695759 CGGGCCAACGCAAGCATAA 61.696 57.895 4.39 0.00 45.62 1.90
3291 4302 3.066621 TGTGAATGAGTGAGTTTTGGTGC 59.933 43.478 0.00 0.00 0.00 5.01
3292 4303 2.290367 TGAATGAGTGAGTTTTGGTGCG 59.710 45.455 0.00 0.00 0.00 5.34
3293 4304 1.238439 ATGAGTGAGTTTTGGTGCGG 58.762 50.000 0.00 0.00 0.00 5.69
3294 4305 1.282875 GAGTGAGTTTTGGTGCGGC 59.717 57.895 0.00 0.00 0.00 6.53
3295 4306 1.444119 GAGTGAGTTTTGGTGCGGCA 61.444 55.000 0.00 0.00 0.00 5.69
3296 4307 1.008538 GTGAGTTTTGGTGCGGCAG 60.009 57.895 1.18 0.00 0.00 4.85
3297 4308 1.153066 TGAGTTTTGGTGCGGCAGA 60.153 52.632 1.18 0.00 0.00 4.26
3298 4309 1.165907 TGAGTTTTGGTGCGGCAGAG 61.166 55.000 1.18 0.00 0.00 3.35
3299 4310 1.152963 AGTTTTGGTGCGGCAGAGT 60.153 52.632 1.18 0.00 0.00 3.24
3300 4311 1.166531 AGTTTTGGTGCGGCAGAGTC 61.167 55.000 1.18 0.00 0.00 3.36
3301 4312 1.896660 TTTTGGTGCGGCAGAGTCC 60.897 57.895 1.18 0.87 0.00 3.85
3302 4313 2.616797 TTTTGGTGCGGCAGAGTCCA 62.617 55.000 1.18 4.12 0.00 4.02
3303 4314 3.825160 TTGGTGCGGCAGAGTCCAC 62.825 63.158 1.18 0.00 0.00 4.02
3305 4316 4.314440 GTGCGGCAGAGTCCACCA 62.314 66.667 1.18 0.00 0.00 4.17
3306 4317 3.321648 TGCGGCAGAGTCCACCAT 61.322 61.111 0.00 0.00 0.00 3.55
3307 4318 2.821366 GCGGCAGAGTCCACCATG 60.821 66.667 0.00 0.00 0.00 3.66
3323 4334 6.376581 GTCCACCATGATGAAGAGAAGAAATT 59.623 38.462 0.00 0.00 0.00 1.82
3324 4335 7.554118 GTCCACCATGATGAAGAGAAGAAATTA 59.446 37.037 0.00 0.00 0.00 1.40
3325 4336 8.277197 TCCACCATGATGAAGAGAAGAAATTAT 58.723 33.333 0.00 0.00 0.00 1.28
3380 4391 6.305272 TCCATGAGAATTTCTTGTAGCTCT 57.695 37.500 0.00 0.00 30.91 4.09
3585 4604 9.691362 ATTATTATTTTTGTCAAGTTTCAGCGT 57.309 25.926 0.00 0.00 0.00 5.07
3715 4736 0.035820 TGCAGTTGGGGTAATCCGTC 60.036 55.000 0.00 0.00 36.01 4.79
3734 4755 4.212847 CCGTCTGATGAATCATGATGAACC 59.787 45.833 9.46 0.47 36.02 3.62
3744 4765 3.761897 TCATGATGAACCCCGAAAAGTT 58.238 40.909 0.00 0.00 0.00 2.66
3760 4781 4.712122 AAAGTTTTTCGAAGCACTTCCA 57.288 36.364 19.00 0.00 36.27 3.53
3761 4782 3.692791 AGTTTTTCGAAGCACTTCCAC 57.307 42.857 0.00 0.00 36.27 4.02
3763 4784 4.448210 AGTTTTTCGAAGCACTTCCACTA 58.552 39.130 0.00 0.00 36.27 2.74
3787 5128 4.151157 GTCCACATCAAAATTTGCTCTTGC 59.849 41.667 0.00 0.00 40.20 4.01
3807 5148 7.667557 TCTTGCTGAAACTACTTTAGAAGCTA 58.332 34.615 0.00 0.00 0.00 3.32
3841 5182 7.326454 TCTGATAGTTTGATGGAAAGTGAGAG 58.674 38.462 0.00 0.00 0.00 3.20
3952 5293 8.761689 AGTTGATCAAAAATGTTGGCCTATATT 58.238 29.630 10.35 3.36 0.00 1.28
3956 5297 9.643693 GATCAAAAATGTTGGCCTATATTATGG 57.356 33.333 9.41 3.16 0.00 2.74
3957 5298 8.774546 TCAAAAATGTTGGCCTATATTATGGA 57.225 30.769 9.41 5.17 0.00 3.41
3958 5299 9.378504 TCAAAAATGTTGGCCTATATTATGGAT 57.621 29.630 9.41 0.00 0.00 3.41
4005 5346 2.554032 GCCGGGAAATGATTTGATCGAT 59.446 45.455 2.18 0.00 0.00 3.59
4006 5347 3.365364 GCCGGGAAATGATTTGATCGATC 60.365 47.826 18.72 18.72 0.00 3.69
4028 5370 1.883084 CGCCTCCATAGTCGTTGGC 60.883 63.158 0.00 0.00 37.24 4.52
4029 5371 1.883084 GCCTCCATAGTCGTTGGCG 60.883 63.158 0.00 0.00 39.92 5.69
4030 5372 1.883084 CCTCCATAGTCGTTGGCGC 60.883 63.158 0.00 0.00 38.14 6.53
4034 5376 2.202878 ATAGTCGTTGGCGCGCAT 60.203 55.556 34.42 12.32 38.14 4.73
4035 5377 2.525248 ATAGTCGTTGGCGCGCATG 61.525 57.895 34.42 18.92 38.14 4.06
4036 5378 2.899345 ATAGTCGTTGGCGCGCATGA 62.899 55.000 34.42 21.09 38.14 3.07
4037 5379 4.794241 GTCGTTGGCGCGCATGAC 62.794 66.667 34.42 27.70 38.14 3.06
4039 5381 4.382114 CGTTGGCGCGCATGACAA 62.382 61.111 34.42 23.86 0.00 3.18
4040 5382 2.800746 GTTGGCGCGCATGACAAC 60.801 61.111 34.42 29.92 36.78 3.32
4081 5427 4.069232 CTCTCGGCAGCGACCCAA 62.069 66.667 0.00 0.00 0.00 4.12
4083 5429 4.379243 CTCGGCAGCGACCCAACT 62.379 66.667 0.00 0.00 0.00 3.16
4084 5430 3.883744 CTCGGCAGCGACCCAACTT 62.884 63.158 0.00 0.00 0.00 2.66
4097 5443 3.219281 ACCCAACTTTTCGCAACATAGT 58.781 40.909 0.00 0.00 0.00 2.12
4099 5445 4.226761 CCCAACTTTTCGCAACATAGTTC 58.773 43.478 0.00 0.00 0.00 3.01
4112 5458 3.138304 ACATAGTTCTTGTTGCGCTCAA 58.862 40.909 9.73 13.27 0.00 3.02
4169 5515 2.008329 ACGTTTTCTACCGTTGCAACA 58.992 42.857 28.01 9.07 32.50 3.33
4171 5517 3.065648 ACGTTTTCTACCGTTGCAACATT 59.934 39.130 28.01 16.49 32.50 2.71
4208 5554 0.261696 AACAAACCCCCTCTGTTGCT 59.738 50.000 0.00 0.00 32.19 3.91
4213 5559 2.584608 CCCCTCTGTTGCTACCCG 59.415 66.667 0.00 0.00 0.00 5.28
4214 5560 2.291043 CCCCTCTGTTGCTACCCGT 61.291 63.158 0.00 0.00 0.00 5.28
4215 5561 1.218316 CCCTCTGTTGCTACCCGTC 59.782 63.158 0.00 0.00 0.00 4.79
4216 5562 1.541310 CCCTCTGTTGCTACCCGTCA 61.541 60.000 0.00 0.00 0.00 4.35
4217 5563 0.537188 CCTCTGTTGCTACCCGTCAT 59.463 55.000 0.00 0.00 0.00 3.06
4218 5564 1.066143 CCTCTGTTGCTACCCGTCATT 60.066 52.381 0.00 0.00 0.00 2.57
4219 5565 2.615493 CCTCTGTTGCTACCCGTCATTT 60.615 50.000 0.00 0.00 0.00 2.32
4220 5566 2.416547 CTCTGTTGCTACCCGTCATTTG 59.583 50.000 0.00 0.00 0.00 2.32
4221 5567 0.878416 TGTTGCTACCCGTCATTTGC 59.122 50.000 0.00 0.00 0.00 3.68
4222 5568 0.878416 GTTGCTACCCGTCATTTGCA 59.122 50.000 0.00 0.00 0.00 4.08
4223 5569 1.268352 GTTGCTACCCGTCATTTGCAA 59.732 47.619 0.00 0.00 37.96 4.08
4224 5570 1.610363 TGCTACCCGTCATTTGCAAA 58.390 45.000 15.44 15.44 0.00 3.68
4225 5571 1.957177 TGCTACCCGTCATTTGCAAAA 59.043 42.857 17.19 0.00 0.00 2.44
4226 5572 2.560542 TGCTACCCGTCATTTGCAAAAT 59.439 40.909 17.19 2.09 0.00 1.82
4227 5573 2.923020 GCTACCCGTCATTTGCAAAATG 59.077 45.455 17.19 14.34 0.00 2.32
4228 5574 2.453983 ACCCGTCATTTGCAAAATGG 57.546 45.000 17.19 14.82 0.00 3.16
4229 5575 1.077915 CCCGTCATTTGCAAAATGGC 58.922 50.000 17.19 14.61 0.00 4.40
4230 5576 1.077915 CCGTCATTTGCAAAATGGCC 58.922 50.000 17.19 0.00 0.00 5.36
4231 5577 1.077915 CGTCATTTGCAAAATGGCCC 58.922 50.000 17.19 6.43 0.00 5.80
4232 5578 1.607509 CGTCATTTGCAAAATGGCCCA 60.608 47.619 17.19 0.00 0.00 5.36
4233 5579 2.713877 GTCATTTGCAAAATGGCCCAT 58.286 42.857 17.19 0.00 0.00 4.00
4234 5580 2.420722 GTCATTTGCAAAATGGCCCATG 59.579 45.455 17.19 7.37 0.00 3.66
4235 5581 2.040012 TCATTTGCAAAATGGCCCATGT 59.960 40.909 17.19 0.00 0.00 3.21
4236 5582 2.653234 TTTGCAAAATGGCCCATGTT 57.347 40.000 10.02 0.00 0.00 2.71
4237 5583 1.893544 TTGCAAAATGGCCCATGTTG 58.106 45.000 20.49 20.49 40.81 3.33
4238 5584 0.763652 TGCAAAATGGCCCATGTTGT 59.236 45.000 24.27 0.00 40.21 3.32
4239 5585 1.158434 GCAAAATGGCCCATGTTGTG 58.842 50.000 24.27 5.76 40.21 3.33
4240 5586 1.270732 GCAAAATGGCCCATGTTGTGA 60.271 47.619 24.27 0.00 40.21 3.58
4241 5587 2.809665 GCAAAATGGCCCATGTTGTGAA 60.810 45.455 24.27 0.00 40.21 3.18
4242 5588 3.068560 CAAAATGGCCCATGTTGTGAAG 58.931 45.455 17.19 0.00 35.15 3.02
4243 5589 0.609662 AATGGCCCATGTTGTGAAGC 59.390 50.000 0.00 0.00 0.00 3.86
4263 5639 1.163420 TCCTTTGCAACATGACGCGT 61.163 50.000 13.85 13.85 0.00 6.01
4342 5719 4.941609 GAGGATGCCTCGCTCAAA 57.058 55.556 0.00 0.00 41.08 2.69
4345 5722 0.835941 AGGATGCCTCGCTCAAAGAT 59.164 50.000 0.00 0.00 0.00 2.40
4348 5725 2.134346 GATGCCTCGCTCAAAGATCTC 58.866 52.381 0.00 0.00 0.00 2.75
4352 5729 2.287909 GCCTCGCTCAAAGATCTCGTAT 60.288 50.000 0.00 0.00 0.00 3.06
4353 5730 3.304257 CCTCGCTCAAAGATCTCGTATG 58.696 50.000 0.00 0.00 0.00 2.39
4356 5733 1.789464 GCTCAAAGATCTCGTATGCGG 59.211 52.381 2.62 0.00 38.89 5.69
4357 5734 2.799917 GCTCAAAGATCTCGTATGCGGT 60.800 50.000 2.62 0.00 38.89 5.68
4358 5735 3.046390 CTCAAAGATCTCGTATGCGGTC 58.954 50.000 2.62 0.00 38.89 4.79
4360 5737 2.493713 AAGATCTCGTATGCGGTCAC 57.506 50.000 2.62 0.00 38.89 3.67
4361 5738 0.308068 AGATCTCGTATGCGGTCACG 59.692 55.000 2.62 0.00 44.63 4.35
4363 5740 0.029035 ATCTCGTATGCGGTCACGTC 59.971 55.000 2.62 0.00 43.45 4.34
4416 5801 4.293694 CGGAGCTGAAGATCGTCG 57.706 61.111 4.15 0.87 0.00 5.12
4417 5802 1.429825 CGGAGCTGAAGATCGTCGT 59.570 57.895 4.15 0.00 0.00 4.34
4418 5803 0.179161 CGGAGCTGAAGATCGTCGTT 60.179 55.000 4.15 0.00 0.00 3.85
4419 5804 1.272781 GGAGCTGAAGATCGTCGTTG 58.727 55.000 4.15 0.00 0.00 4.10
4420 5805 1.402984 GGAGCTGAAGATCGTCGTTGT 60.403 52.381 4.15 0.00 0.00 3.32
4421 5806 2.329379 GAGCTGAAGATCGTCGTTGTT 58.671 47.619 4.15 0.00 0.00 2.83
4422 5807 2.061773 AGCTGAAGATCGTCGTTGTTG 58.938 47.619 4.15 0.00 0.00 3.33
4423 5808 1.792949 GCTGAAGATCGTCGTTGTTGT 59.207 47.619 4.15 0.00 0.00 3.32
4424 5809 2.221055 GCTGAAGATCGTCGTTGTTGTT 59.779 45.455 4.15 0.00 0.00 2.83
4425 5810 3.787826 CTGAAGATCGTCGTTGTTGTTG 58.212 45.455 4.15 0.00 0.00 3.33
4426 5811 2.033236 TGAAGATCGTCGTTGTTGTTGC 60.033 45.455 4.15 0.00 0.00 4.17
4427 5812 1.577468 AGATCGTCGTTGTTGTTGCA 58.423 45.000 0.00 0.00 0.00 4.08
4428 5813 1.937223 AGATCGTCGTTGTTGTTGCAA 59.063 42.857 0.00 0.00 0.00 4.08
4429 5814 2.353269 AGATCGTCGTTGTTGTTGCAAA 59.647 40.909 0.00 0.00 0.00 3.68
4430 5815 2.166741 TCGTCGTTGTTGTTGCAAAG 57.833 45.000 0.00 0.00 0.00 2.77
4431 5816 1.732809 TCGTCGTTGTTGTTGCAAAGA 59.267 42.857 0.00 0.00 35.23 2.52
4432 5817 2.353269 TCGTCGTTGTTGTTGCAAAGAT 59.647 40.909 0.00 0.00 38.62 2.40
4433 5818 2.713976 CGTCGTTGTTGTTGCAAAGATC 59.286 45.455 0.00 0.00 38.62 2.75
4434 5819 3.546020 CGTCGTTGTTGTTGCAAAGATCT 60.546 43.478 0.00 0.00 38.62 2.75
4435 5820 4.318475 CGTCGTTGTTGTTGCAAAGATCTA 60.318 41.667 0.00 0.00 38.62 1.98
4436 5821 5.614668 CGTCGTTGTTGTTGCAAAGATCTAT 60.615 40.000 0.00 0.00 38.62 1.98
4437 5822 5.790495 GTCGTTGTTGTTGCAAAGATCTATC 59.210 40.000 0.00 0.00 38.62 2.08
4438 5823 5.700832 TCGTTGTTGTTGCAAAGATCTATCT 59.299 36.000 0.00 0.00 39.22 1.98
4440 5825 6.303970 CGTTGTTGTTGCAAAGATCTATCTTG 59.696 38.462 0.00 0.00 45.83 3.02
4441 5826 6.258230 TGTTGTTGCAAAGATCTATCTTGG 57.742 37.500 0.00 4.50 45.83 3.61
4442 5827 5.769662 TGTTGTTGCAAAGATCTATCTTGGT 59.230 36.000 0.00 0.00 45.83 3.67
4443 5828 6.265196 TGTTGTTGCAAAGATCTATCTTGGTT 59.735 34.615 0.00 0.00 45.83 3.67
4444 5829 6.258230 TGTTGCAAAGATCTATCTTGGTTG 57.742 37.500 0.00 2.89 45.83 3.77
4445 5830 5.769662 TGTTGCAAAGATCTATCTTGGTTGT 59.230 36.000 0.00 0.00 45.83 3.32
4446 5831 6.072508 TGTTGCAAAGATCTATCTTGGTTGTC 60.073 38.462 0.00 0.27 45.83 3.18
4447 5832 4.943705 TGCAAAGATCTATCTTGGTTGTCC 59.056 41.667 5.99 0.00 45.83 4.02
4448 5833 4.336713 GCAAAGATCTATCTTGGTTGTCCC 59.663 45.833 5.99 0.00 45.83 4.46
4449 5834 5.749462 CAAAGATCTATCTTGGTTGTCCCT 58.251 41.667 5.99 0.00 45.83 4.20
4450 5835 5.365021 AAGATCTATCTTGGTTGTCCCTG 57.635 43.478 4.42 0.00 44.91 4.45
4451 5836 4.624913 AGATCTATCTTGGTTGTCCCTGA 58.375 43.478 0.00 0.00 31.97 3.86
4452 5837 4.653341 AGATCTATCTTGGTTGTCCCTGAG 59.347 45.833 0.00 0.00 31.97 3.35
4453 5838 3.107601 TCTATCTTGGTTGTCCCTGAGG 58.892 50.000 0.00 0.00 0.00 3.86
4454 5839 0.995024 ATCTTGGTTGTCCCTGAGGG 59.005 55.000 12.53 12.53 46.11 4.30
4455 5840 1.303643 CTTGGTTGTCCCTGAGGGC 60.304 63.158 14.20 8.93 43.94 5.19
4456 5841 2.771328 CTTGGTTGTCCCTGAGGGCC 62.771 65.000 14.20 8.97 43.94 5.80
4457 5842 2.936032 GGTTGTCCCTGAGGGCCT 60.936 66.667 14.20 5.25 43.94 5.19
4458 5843 1.615424 GGTTGTCCCTGAGGGCCTA 60.615 63.158 14.20 0.00 43.94 3.93
4459 5844 1.602771 GTTGTCCCTGAGGGCCTAC 59.397 63.158 14.20 4.71 43.94 3.18
4460 5845 1.159905 TTGTCCCTGAGGGCCTACA 59.840 57.895 14.20 9.80 43.94 2.74
4461 5846 0.474854 TTGTCCCTGAGGGCCTACAA 60.475 55.000 14.20 15.74 43.94 2.41
4462 5847 1.198759 TGTCCCTGAGGGCCTACAAC 61.199 60.000 14.20 5.12 43.94 3.32
4463 5848 1.159905 TCCCTGAGGGCCTACAACA 59.840 57.895 14.20 0.00 43.94 3.33
4464 5849 0.253160 TCCCTGAGGGCCTACAACAT 60.253 55.000 14.20 0.00 43.94 2.71
4465 5850 0.181350 CCCTGAGGGCCTACAACATC 59.819 60.000 5.73 0.00 35.35 3.06
4466 5851 0.911769 CCTGAGGGCCTACAACATCA 59.088 55.000 5.73 0.00 0.00 3.07
4467 5852 1.492176 CCTGAGGGCCTACAACATCAT 59.508 52.381 5.73 0.00 0.00 2.45
4468 5853 2.486191 CCTGAGGGCCTACAACATCATC 60.486 54.545 5.73 0.00 0.00 2.92
4469 5854 1.490490 TGAGGGCCTACAACATCATCC 59.510 52.381 5.73 0.00 0.00 3.51
4470 5855 0.846693 AGGGCCTACAACATCATCCC 59.153 55.000 2.82 0.00 0.00 3.85
4471 5856 0.535102 GGGCCTACAACATCATCCCG 60.535 60.000 0.84 0.00 0.00 5.14
4472 5857 0.535102 GGCCTACAACATCATCCCGG 60.535 60.000 0.00 0.00 0.00 5.73
4473 5858 1.166531 GCCTACAACATCATCCCGGC 61.167 60.000 0.00 0.00 0.00 6.13
4474 5859 0.180171 CCTACAACATCATCCCGGCA 59.820 55.000 0.00 0.00 0.00 5.69
4475 5860 1.586422 CTACAACATCATCCCGGCAG 58.414 55.000 0.00 0.00 0.00 4.85
4476 5861 0.180171 TACAACATCATCCCGGCAGG 59.820 55.000 0.00 0.00 37.24 4.85
4484 5869 4.804420 TCCCGGCAGGATCCAGCT 62.804 66.667 26.27 0.00 40.93 4.24
4485 5870 2.844362 CCCGGCAGGATCCAGCTA 60.844 66.667 26.27 0.00 41.02 3.32
4486 5871 2.423446 CCGGCAGGATCCAGCTAC 59.577 66.667 26.27 11.58 41.02 3.58
4487 5872 2.423446 CGGCAGGATCCAGCTACC 59.577 66.667 26.27 10.89 0.00 3.18
4488 5873 2.423446 GGCAGGATCCAGCTACCG 59.577 66.667 26.27 1.66 0.00 4.02
4489 5874 2.280457 GCAGGATCCAGCTACCGC 60.280 66.667 21.14 4.54 0.00 5.68
4490 5875 2.423446 CAGGATCCAGCTACCGCC 59.577 66.667 15.82 0.00 36.60 6.13
4491 5876 2.041922 AGGATCCAGCTACCGCCA 60.042 61.111 15.82 0.00 36.60 5.69
4492 5877 1.460305 AGGATCCAGCTACCGCCAT 60.460 57.895 15.82 0.00 36.60 4.40
4493 5878 1.004440 GGATCCAGCTACCGCCATC 60.004 63.158 6.95 0.00 36.60 3.51
4494 5879 1.373497 GATCCAGCTACCGCCATCG 60.373 63.158 0.00 0.00 36.60 3.84
4495 5880 2.088674 GATCCAGCTACCGCCATCGT 62.089 60.000 0.00 0.00 36.60 3.73
4496 5881 2.088674 ATCCAGCTACCGCCATCGTC 62.089 60.000 0.00 0.00 36.60 4.20
4497 5882 2.279517 CAGCTACCGCCATCGTCC 60.280 66.667 0.00 0.00 36.60 4.79
4498 5883 3.537874 AGCTACCGCCATCGTCCC 61.538 66.667 0.00 0.00 36.60 4.46
4499 5884 3.537874 GCTACCGCCATCGTCCCT 61.538 66.667 0.00 0.00 0.00 4.20
4500 5885 3.090219 GCTACCGCCATCGTCCCTT 62.090 63.158 0.00 0.00 0.00 3.95
4501 5886 1.227263 CTACCGCCATCGTCCCTTG 60.227 63.158 0.00 0.00 0.00 3.61
4502 5887 3.379865 TACCGCCATCGTCCCTTGC 62.380 63.158 0.00 0.00 0.00 4.01
4505 5890 4.115199 GCCATCGTCCCTTGCCCT 62.115 66.667 0.00 0.00 0.00 5.19
4506 5891 2.124570 CCATCGTCCCTTGCCCTG 60.125 66.667 0.00 0.00 0.00 4.45
4507 5892 2.124570 CATCGTCCCTTGCCCTGG 60.125 66.667 0.00 0.00 0.00 4.45
4508 5893 4.115199 ATCGTCCCTTGCCCTGGC 62.115 66.667 0.00 0.00 42.35 4.85
4513 5898 4.883354 CCCTTGCCCTGGCCGATC 62.883 72.222 5.57 0.00 41.09 3.69
4514 5899 3.801997 CCTTGCCCTGGCCGATCT 61.802 66.667 5.57 0.00 41.09 2.75
4515 5900 2.515523 CTTGCCCTGGCCGATCTG 60.516 66.667 5.57 0.00 41.09 2.90
4516 5901 4.802051 TTGCCCTGGCCGATCTGC 62.802 66.667 5.57 0.00 41.09 4.26
4518 5903 4.802051 GCCCTGGCCGATCTGCAA 62.802 66.667 11.45 0.00 34.56 4.08
4519 5904 2.825836 CCCTGGCCGATCTGCAAC 60.826 66.667 11.45 0.00 0.00 4.17
4520 5905 2.046023 CCTGGCCGATCTGCAACA 60.046 61.111 11.45 0.01 0.00 3.33
4521 5906 1.452651 CCTGGCCGATCTGCAACAT 60.453 57.895 11.45 0.00 0.00 2.71
4522 5907 0.179048 CCTGGCCGATCTGCAACATA 60.179 55.000 11.45 0.00 0.00 2.29
4523 5908 0.940126 CTGGCCGATCTGCAACATAC 59.060 55.000 11.45 0.00 0.00 2.39
4524 5909 0.463654 TGGCCGATCTGCAACATACC 60.464 55.000 11.45 0.00 0.00 2.73
4525 5910 1.166531 GGCCGATCTGCAACATACCC 61.167 60.000 11.45 0.00 0.00 3.69
4526 5911 0.179045 GCCGATCTGCAACATACCCT 60.179 55.000 4.00 0.00 0.00 4.34
4527 5912 1.586422 CCGATCTGCAACATACCCTG 58.414 55.000 0.00 0.00 0.00 4.45
4528 5913 1.134401 CCGATCTGCAACATACCCTGT 60.134 52.381 0.00 0.00 40.84 4.00
4529 5914 1.935873 CGATCTGCAACATACCCTGTG 59.064 52.381 0.00 0.00 38.39 3.66
4530 5915 2.677902 CGATCTGCAACATACCCTGTGT 60.678 50.000 0.00 0.00 38.39 3.72
4531 5916 2.949177 TCTGCAACATACCCTGTGTT 57.051 45.000 0.00 0.00 40.23 3.32
4536 5921 3.940209 CAACATACCCTGTGTTGCATT 57.060 42.857 6.12 0.00 46.64 3.56
4537 5922 4.255833 CAACATACCCTGTGTTGCATTT 57.744 40.909 6.12 0.00 46.64 2.32
4538 5923 3.940209 ACATACCCTGTGTTGCATTTG 57.060 42.857 0.00 0.00 36.48 2.32
4539 5924 3.495331 ACATACCCTGTGTTGCATTTGA 58.505 40.909 0.00 0.00 36.48 2.69
4540 5925 3.894427 ACATACCCTGTGTTGCATTTGAA 59.106 39.130 0.00 0.00 36.48 2.69
4541 5926 4.343526 ACATACCCTGTGTTGCATTTGAAA 59.656 37.500 0.00 0.00 36.48 2.69
4542 5927 3.457610 ACCCTGTGTTGCATTTGAAAG 57.542 42.857 0.00 0.00 0.00 2.62
4543 5928 2.102925 ACCCTGTGTTGCATTTGAAAGG 59.897 45.455 0.00 0.00 0.00 3.11
4544 5929 2.548493 CCCTGTGTTGCATTTGAAAGGG 60.548 50.000 5.59 5.59 37.38 3.95
4545 5930 2.102925 CCTGTGTTGCATTTGAAAGGGT 59.897 45.455 0.00 0.00 0.00 4.34
4546 5931 3.432046 CCTGTGTTGCATTTGAAAGGGTT 60.432 43.478 0.00 0.00 0.00 4.11
4547 5932 3.529533 TGTGTTGCATTTGAAAGGGTTG 58.470 40.909 0.00 0.00 0.00 3.77
4548 5933 2.287644 GTGTTGCATTTGAAAGGGTTGC 59.712 45.455 0.00 0.00 0.00 4.17
4549 5934 2.093288 TGTTGCATTTGAAAGGGTTGCA 60.093 40.909 0.23 0.23 41.22 4.08
4550 5935 2.996249 TGCATTTGAAAGGGTTGCAA 57.004 40.000 0.00 0.00 40.11 4.08
4551 5936 2.836262 TGCATTTGAAAGGGTTGCAAG 58.164 42.857 0.00 0.00 40.11 4.01
4552 5937 2.433604 TGCATTTGAAAGGGTTGCAAGA 59.566 40.909 0.00 0.00 40.11 3.02
4553 5938 3.118482 TGCATTTGAAAGGGTTGCAAGAA 60.118 39.130 0.00 0.00 40.11 2.52
4554 5939 3.876320 GCATTTGAAAGGGTTGCAAGAAA 59.124 39.130 0.00 0.00 33.58 2.52
4555 5940 4.335037 GCATTTGAAAGGGTTGCAAGAAAA 59.665 37.500 0.00 0.00 33.58 2.29
4556 5941 5.504501 GCATTTGAAAGGGTTGCAAGAAAAG 60.505 40.000 0.00 0.00 33.58 2.27
4557 5942 3.177997 TGAAAGGGTTGCAAGAAAAGC 57.822 42.857 0.00 0.00 0.00 3.51
4558 5943 2.158971 TGAAAGGGTTGCAAGAAAAGCC 60.159 45.455 0.00 0.00 43.97 4.35
4559 5944 0.758734 AAGGGTTGCAAGAAAAGCCC 59.241 50.000 11.68 11.68 44.57 5.19
4560 5945 0.398381 AGGGTTGCAAGAAAAGCCCA 60.398 50.000 19.55 0.00 44.57 5.36
4561 5946 0.686789 GGGTTGCAAGAAAAGCCCAT 59.313 50.000 14.13 0.00 38.90 4.00
4562 5947 1.608801 GGGTTGCAAGAAAAGCCCATG 60.609 52.381 14.13 0.00 38.90 3.66
4563 5948 1.070601 GGTTGCAAGAAAAGCCCATGT 59.929 47.619 0.00 0.00 0.00 3.21
4564 5949 2.137523 GTTGCAAGAAAAGCCCATGTG 58.862 47.619 0.00 0.00 0.00 3.21
4565 5950 0.033781 TGCAAGAAAAGCCCATGTGC 59.966 50.000 0.00 0.00 0.00 4.57
4566 5951 0.033781 GCAAGAAAAGCCCATGTGCA 59.966 50.000 2.19 0.00 0.00 4.57
4567 5952 1.540797 GCAAGAAAAGCCCATGTGCAA 60.541 47.619 2.19 0.00 0.00 4.08
4568 5953 2.836262 CAAGAAAAGCCCATGTGCAAA 58.164 42.857 2.19 0.00 0.00 3.68
4569 5954 2.803956 CAAGAAAAGCCCATGTGCAAAG 59.196 45.455 2.19 0.00 0.00 2.77
4570 5955 1.150827 GAAAAGCCCATGTGCAAAGC 58.849 50.000 2.19 0.00 0.00 3.51
4571 5956 0.760572 AAAAGCCCATGTGCAAAGCT 59.239 45.000 2.19 0.00 34.64 3.74
4572 5957 0.034337 AAAGCCCATGTGCAAAGCTG 59.966 50.000 2.19 0.00 33.18 4.24
4573 5958 1.823169 AAGCCCATGTGCAAAGCTGG 61.823 55.000 2.19 0.00 33.18 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.695830 TTTCTCCCTGTTAACGATGCT 57.304 42.857 0.26 0.00 0.00 3.79
19 20 7.446013 ACACAATTATTTTCTCCCTGTTAACGA 59.554 33.333 0.26 0.00 0.00 3.85
27 28 6.147437 TGGGTACACAATTATTTTCTCCCT 57.853 37.500 0.00 0.00 33.15 4.20
76 77 0.252330 TGACCACCGTTATGGGAGGA 60.252 55.000 10.51 0.00 44.81 3.71
77 78 0.107848 GTGACCACCGTTATGGGAGG 60.108 60.000 0.00 0.00 44.81 4.30
84 88 1.079681 GGCGATGTGACCACCGTTA 60.080 57.895 0.00 0.00 0.00 3.18
171 184 3.111484 ACTTCCCTTCTTCCATCTCTCC 58.889 50.000 0.00 0.00 0.00 3.71
181 194 1.692411 AAAGCGCAACTTCCCTTCTT 58.308 45.000 11.47 0.00 37.75 2.52
183 196 1.663161 CGAAAAGCGCAACTTCCCTTC 60.663 52.381 11.47 0.00 37.75 3.46
232 245 5.522315 TCCCTATCATCCTTATCTCTCGT 57.478 43.478 0.00 0.00 0.00 4.18
260 273 2.528818 CCCTCTCTGTGGTGCCCAA 61.529 63.158 0.00 0.00 34.18 4.12
271 285 1.593787 CATCACGTGTGCCCTCTCT 59.406 57.895 16.51 0.00 0.00 3.10
272 286 2.103042 GCATCACGTGTGCCCTCTC 61.103 63.158 23.82 4.45 36.61 3.20
286 300 4.778143 AACCGCCTCCCACGCATC 62.778 66.667 0.00 0.00 0.00 3.91
460 481 0.672401 CCTCGTATGCGTGGTGGTTT 60.672 55.000 15.09 0.00 44.14 3.27
461 482 1.079405 CCTCGTATGCGTGGTGGTT 60.079 57.895 15.09 0.00 44.14 3.67
462 483 2.577059 CCTCGTATGCGTGGTGGT 59.423 61.111 15.09 0.00 44.14 4.16
464 485 1.518572 GTCCCTCGTATGCGTGGTG 60.519 63.158 20.39 13.02 46.73 4.17
465 486 2.718073 GGTCCCTCGTATGCGTGGT 61.718 63.158 20.39 0.00 46.73 4.16
468 489 3.522808 GAGGTCCCTCGTATGCGT 58.477 61.111 2.37 0.00 39.49 5.24
483 1396 0.236187 CGTCCTTATCTCTCGCCGAG 59.764 60.000 8.05 8.05 41.30 4.63
530 1443 0.603439 TGCATGCATGACACGTGTCT 60.603 50.000 39.62 26.29 44.99 3.41
560 1473 4.870221 TGATTTCTCGCTCATGTCAATG 57.130 40.909 0.00 0.00 34.88 2.82
561 1474 5.277202 CGATTGATTTCTCGCTCATGTCAAT 60.277 40.000 2.98 2.98 37.49 2.57
567 1480 1.869767 GCCGATTGATTTCTCGCTCAT 59.130 47.619 0.00 0.00 33.63 2.90
568 1481 1.290203 GCCGATTGATTTCTCGCTCA 58.710 50.000 0.00 0.00 33.63 4.26
587 1500 0.958382 TGGGAAGCGGTTCAATTCGG 60.958 55.000 26.94 0.00 33.93 4.30
594 1507 4.440112 CCAAAGAAATATGGGAAGCGGTTC 60.440 45.833 18.86 18.86 32.87 3.62
639 1552 7.675962 ATTTTCTGCCTGTTATGTTAACGTA 57.324 32.000 3.32 3.32 0.00 3.57
667 1580 7.587037 ATTGATGTGGAAATATTGGTAGGTG 57.413 36.000 0.00 0.00 0.00 4.00
668 1581 7.013274 CGAATTGATGTGGAAATATTGGTAGGT 59.987 37.037 0.00 0.00 0.00 3.08
702 1615 0.392060 GGAAGGATACGCGGTGGTTT 60.392 55.000 12.47 0.00 46.39 3.27
703 1616 1.219935 GGAAGGATACGCGGTGGTT 59.780 57.895 12.47 0.00 46.39 3.67
744 1657 1.217882 GGGTGCACGATAAGGATTCG 58.782 55.000 11.45 0.00 42.20 3.34
745 1658 1.141053 AGGGGTGCACGATAAGGATTC 59.859 52.381 11.45 0.00 0.00 2.52
838 1766 2.994417 TTGGCATTCCGGTTGGCC 60.994 61.111 23.53 22.27 46.58 5.36
850 1783 1.460273 GCTTTCCTTTCCGGTTGGCA 61.460 55.000 0.00 0.00 34.14 4.92
1063 2013 4.760047 CAGCGGACGGACAAGGGG 62.760 72.222 0.00 0.00 0.00 4.79
1064 2014 4.760047 CCAGCGGACGGACAAGGG 62.760 72.222 0.00 0.00 0.00 3.95
1065 2015 3.691342 TCCAGCGGACGGACAAGG 61.691 66.667 0.00 0.00 0.00 3.61
1074 2024 4.379174 GCTTCTTTGTCCAGCGGA 57.621 55.556 0.00 0.00 0.00 5.54
1077 2027 1.578206 GGACCGCTTCTTTGTCCAGC 61.578 60.000 3.14 0.00 46.29 4.85
1080 2030 2.033194 CCGGACCGCTTCTTTGTCC 61.033 63.158 8.86 0.00 44.12 4.02
1111 2061 2.613506 GGAGTTTCCCGTTGCCACG 61.614 63.158 2.82 2.82 46.71 4.94
1112 2062 2.613506 CGGAGTTTCCCGTTGCCAC 61.614 63.158 0.00 0.00 44.23 5.01
1113 2063 2.281208 CGGAGTTTCCCGTTGCCA 60.281 61.111 0.00 0.00 44.23 4.92
1156 2106 2.412937 GCTCTGGCTCTCGCTCTC 59.587 66.667 0.00 0.00 36.09 3.20
1157 2107 3.517140 CGCTCTGGCTCTCGCTCT 61.517 66.667 0.00 0.00 36.09 4.09
1158 2108 4.567385 CCGCTCTGGCTCTCGCTC 62.567 72.222 0.00 0.00 36.09 5.03
1209 2159 2.501723 ACGAATCTGGCAGACATAACCT 59.498 45.455 21.37 0.00 0.00 3.50
1213 2163 3.684305 CACAAACGAATCTGGCAGACATA 59.316 43.478 21.37 0.00 0.00 2.29
1216 2166 1.873591 ACACAAACGAATCTGGCAGAC 59.126 47.619 21.37 7.24 0.00 3.51
1285 2242 3.541632 TCAGCAAGAAACGGAAGAAAGT 58.458 40.909 0.00 0.00 0.00 2.66
1292 2261 2.807967 CAGTTCATCAGCAAGAAACGGA 59.192 45.455 0.00 0.00 0.00 4.69
1405 2374 4.821589 CGAACGGAGCAGAGGCCC 62.822 72.222 0.00 0.00 42.56 5.80
1408 2377 1.030488 TAGGACGAACGGAGCAGAGG 61.030 60.000 0.00 0.00 0.00 3.69
1414 2383 3.176552 TCTAGTCTAGGACGAACGGAG 57.823 52.381 7.05 0.00 37.67 4.63
1417 2386 3.626670 ACCAATCTAGTCTAGGACGAACG 59.373 47.826 7.05 0.00 37.67 3.95
1425 2394 6.238648 ACCAAACCAAACCAATCTAGTCTAG 58.761 40.000 0.00 0.00 0.00 2.43
1435 2404 4.576330 AATCCAAACCAAACCAAACCAA 57.424 36.364 0.00 0.00 0.00 3.67
1436 2405 4.265073 CAAATCCAAACCAAACCAAACCA 58.735 39.130 0.00 0.00 0.00 3.67
1437 2406 3.066064 GCAAATCCAAACCAAACCAAACC 59.934 43.478 0.00 0.00 0.00 3.27
1438 2407 3.691609 TGCAAATCCAAACCAAACCAAAC 59.308 39.130 0.00 0.00 0.00 2.93
1439 2408 3.691609 GTGCAAATCCAAACCAAACCAAA 59.308 39.130 0.00 0.00 0.00 3.28
1440 2409 3.274288 GTGCAAATCCAAACCAAACCAA 58.726 40.909 0.00 0.00 0.00 3.67
1441 2410 2.420687 GGTGCAAATCCAAACCAAACCA 60.421 45.455 0.00 0.00 32.69 3.67
1442 2411 2.217750 GGTGCAAATCCAAACCAAACC 58.782 47.619 0.00 0.00 32.69 3.27
1443 2412 1.864082 CGGTGCAAATCCAAACCAAAC 59.136 47.619 0.00 0.00 32.69 2.93
1444 2413 1.808133 GCGGTGCAAATCCAAACCAAA 60.808 47.619 0.00 0.00 32.69 3.28
1476 2445 2.611292 CTCGCCAGATCCAAACAGATTC 59.389 50.000 0.00 0.00 0.00 2.52
1497 2466 2.005971 ATCCAGTAAACCTCGCGTTC 57.994 50.000 5.77 0.00 31.78 3.95
1589 2558 0.249955 AGAGCAGAGAAGAAGCAGGC 59.750 55.000 0.00 0.00 0.00 4.85
1591 2560 4.082300 TGAAGTAGAGCAGAGAAGAAGCAG 60.082 45.833 0.00 0.00 0.00 4.24
1595 2569 4.085733 AGCTGAAGTAGAGCAGAGAAGAA 58.914 43.478 0.00 0.00 39.05 2.52
1694 2673 3.815809 TGGAACCGTGAAGAAAGTTCAT 58.184 40.909 0.00 0.00 40.27 2.57
1708 2687 4.022849 AGCAAAAGAGAAGATTTGGAACCG 60.023 41.667 0.00 0.00 37.09 4.44
1730 2709 1.261619 GAACACGAGACAACAAGCCAG 59.738 52.381 0.00 0.00 0.00 4.85
1803 2782 3.005791 AGGAATAAGCACAAACAGCCAAC 59.994 43.478 0.00 0.00 0.00 3.77
1872 2851 2.993264 AACCACCATGCCTGCTGC 60.993 61.111 0.00 0.00 41.77 5.25
2032 3018 4.035208 GGAGTAACCACAACAAGTCAACAG 59.965 45.833 0.00 0.00 38.79 3.16
2065 3051 3.181469 GGTTCGGTGCAGAGGTCATAATA 60.181 47.826 0.00 0.00 0.00 0.98
2066 3052 2.420129 GGTTCGGTGCAGAGGTCATAAT 60.420 50.000 0.00 0.00 0.00 1.28
2067 3053 1.066430 GGTTCGGTGCAGAGGTCATAA 60.066 52.381 0.00 0.00 0.00 1.90
2140 3126 1.670791 TTGACCGTTGGTGAAACTCC 58.329 50.000 0.00 0.00 35.25 3.85
2332 3322 7.482474 TGCATATGTCACCACAAATTTGATAG 58.518 34.615 24.64 13.84 35.64 2.08
2344 3336 4.587891 TCACAAGATTGCATATGTCACCA 58.412 39.130 4.29 0.00 0.00 4.17
2373 3365 7.884877 CAGAATTACCAGGCCATTATTGATCTA 59.115 37.037 5.01 0.00 0.00 1.98
2374 3366 6.718454 CAGAATTACCAGGCCATTATTGATCT 59.282 38.462 5.01 0.00 0.00 2.75
2379 3371 5.763204 CGTACAGAATTACCAGGCCATTATT 59.237 40.000 5.01 0.00 0.00 1.40
2436 3428 7.604927 AGTTATCCGTGCTGTAAAAACAAGATA 59.395 33.333 0.00 0.00 0.00 1.98
2464 3456 7.277174 AGGAAGAAAACAATTAGTGAAGGTG 57.723 36.000 0.00 0.00 0.00 4.00
2465 3457 7.014326 GGAAGGAAGAAAACAATTAGTGAAGGT 59.986 37.037 0.00 0.00 0.00 3.50
2481 3492 2.109834 TGCAATCCAAGGGAAGGAAGAA 59.890 45.455 0.00 0.00 38.93 2.52
2495 3506 2.715046 TGTCATCCAGTTCTGCAATCC 58.285 47.619 0.00 0.00 0.00 3.01
2568 3579 3.678072 TCTTGTAGTACATTTCAGCACGC 59.322 43.478 3.28 0.00 0.00 5.34
2646 3657 1.589993 CAGGTCATACTGCTCGGCG 60.590 63.158 0.00 0.00 0.00 6.46
2697 3708 2.423947 GGTGCAGGGAGATGGATTGAAT 60.424 50.000 0.00 0.00 0.00 2.57
2853 3864 0.537188 GCTCTTCTTCCGGGTCATCA 59.463 55.000 0.00 0.00 0.00 3.07
2862 3873 4.128643 CCTTCTCATCATGCTCTTCTTCC 58.871 47.826 0.00 0.00 0.00 3.46
2903 3914 4.107051 CCTTCTTTGCCGCTGCCG 62.107 66.667 0.00 0.00 36.33 5.69
2972 3983 1.974343 AGCTCGGAGTTCTGCTCGT 60.974 57.895 6.90 0.00 45.03 4.18
2982 3993 1.447489 CACCTTCTGCAGCTCGGAG 60.447 63.158 18.63 0.00 0.00 4.63
2983 3994 1.260538 ATCACCTTCTGCAGCTCGGA 61.261 55.000 18.63 9.32 0.00 4.55
2985 3996 1.144565 CGATCACCTTCTGCAGCTCG 61.145 60.000 9.47 4.84 0.00 5.03
3201 4212 0.037232 CCGAGAACAGGTCCTTGGTC 60.037 60.000 0.00 0.00 34.96 4.02
3240 4251 0.034574 TGGGACCATTATGCTTGCGT 60.035 50.000 0.00 0.00 0.00 5.24
3250 4261 1.224592 GAGCGACCATGGGACCATT 59.775 57.895 18.09 0.00 33.90 3.16
3251 4262 1.690633 AGAGCGACCATGGGACCAT 60.691 57.895 18.09 0.00 37.08 3.55
3291 4302 0.812811 CATCATGGTGGACTCTGCCG 60.813 60.000 0.00 0.00 0.00 5.69
3292 4303 0.543277 TCATCATGGTGGACTCTGCC 59.457 55.000 6.03 0.00 0.00 4.85
3293 4304 2.093288 TCTTCATCATGGTGGACTCTGC 60.093 50.000 6.03 0.00 0.00 4.26
3294 4305 3.450096 TCTCTTCATCATGGTGGACTCTG 59.550 47.826 6.03 0.00 0.00 3.35
3295 4306 3.717576 TCTCTTCATCATGGTGGACTCT 58.282 45.455 6.03 0.00 0.00 3.24
3296 4307 4.161189 TCTTCTCTTCATCATGGTGGACTC 59.839 45.833 6.03 0.00 0.00 3.36
3297 4308 4.099633 TCTTCTCTTCATCATGGTGGACT 58.900 43.478 6.03 0.00 0.00 3.85
3298 4309 4.478206 TCTTCTCTTCATCATGGTGGAC 57.522 45.455 6.03 0.00 0.00 4.02
3299 4310 5.503634 TTTCTTCTCTTCATCATGGTGGA 57.496 39.130 6.03 0.00 0.00 4.02
3300 4311 6.770746 AATTTCTTCTCTTCATCATGGTGG 57.229 37.500 6.03 0.00 0.00 4.61
3380 4391 5.387113 AGAAACCCATCCTATATGCACAA 57.613 39.130 0.00 0.00 0.00 3.33
3585 4604 2.747460 GGCAGCATCGCACAGGAA 60.747 61.111 0.00 0.00 0.00 3.36
3715 4736 3.501062 CGGGGTTCATCATGATTCATCAG 59.499 47.826 5.16 0.00 40.64 2.90
3744 4765 4.056050 GACTAGTGGAAGTGCTTCGAAAA 58.944 43.478 0.00 0.00 40.37 2.29
3758 4779 5.047802 AGCAAATTTTGATGTGGACTAGTGG 60.048 40.000 13.26 0.00 0.00 4.00
3760 4781 6.006449 AGAGCAAATTTTGATGTGGACTAGT 58.994 36.000 13.26 0.00 0.00 2.57
3761 4782 6.506500 AGAGCAAATTTTGATGTGGACTAG 57.493 37.500 13.26 0.00 0.00 2.57
3763 4784 5.535333 CAAGAGCAAATTTTGATGTGGACT 58.465 37.500 13.26 0.00 0.00 3.85
3818 5159 6.213397 TCCTCTCACTTTCCATCAAACTATCA 59.787 38.462 0.00 0.00 0.00 2.15
3821 5162 6.433847 TTCCTCTCACTTTCCATCAAACTA 57.566 37.500 0.00 0.00 0.00 2.24
3822 5163 4.982241 TCCTCTCACTTTCCATCAAACT 57.018 40.909 0.00 0.00 0.00 2.66
3841 5182 4.321230 CCCAATTGTAGTTGCAGAGTTTCC 60.321 45.833 4.43 0.00 0.00 3.13
3876 5217 3.194968 CCAATGAGCAAATTCTTGGCTCT 59.805 43.478 15.33 1.52 36.98 4.09
3883 5224 6.212888 GGTGAATACCAATGAGCAAATTCT 57.787 37.500 0.00 0.00 46.71 2.40
3915 5256 9.107177 ACATTTTTGATCAACTGTTGCATAAAA 57.893 25.926 15.52 16.36 0.00 1.52
3925 5266 4.634199 AGGCCAACATTTTTGATCAACTG 58.366 39.130 7.89 8.77 0.00 3.16
3952 5293 9.689501 TGTAGTGTCGTCCATAATATATCCATA 57.310 33.333 0.00 0.00 0.00 2.74
3953 5294 8.467598 GTGTAGTGTCGTCCATAATATATCCAT 58.532 37.037 0.00 0.00 0.00 3.41
3954 5295 7.361457 CGTGTAGTGTCGTCCATAATATATCCA 60.361 40.741 0.00 0.00 0.00 3.41
3955 5296 6.965500 CGTGTAGTGTCGTCCATAATATATCC 59.035 42.308 0.00 0.00 0.00 2.59
3956 5297 7.524912 ACGTGTAGTGTCGTCCATAATATATC 58.475 38.462 0.00 0.00 35.30 1.63
3957 5298 7.444629 ACGTGTAGTGTCGTCCATAATATAT 57.555 36.000 0.00 0.00 35.30 0.86
3958 5299 6.866010 ACGTGTAGTGTCGTCCATAATATA 57.134 37.500 0.00 0.00 35.30 0.86
3959 5300 5.755813 GACGTGTAGTGTCGTCCATAATAT 58.244 41.667 0.00 0.00 46.83 1.28
3960 5301 5.160699 GACGTGTAGTGTCGTCCATAATA 57.839 43.478 0.00 0.00 46.83 0.98
3961 5302 4.025015 GACGTGTAGTGTCGTCCATAAT 57.975 45.455 0.00 0.00 46.83 1.28
3962 5303 3.476295 GACGTGTAGTGTCGTCCATAA 57.524 47.619 0.00 0.00 46.83 1.90
4005 5346 3.538614 GACTATGGAGGCGGCAGA 58.461 61.111 13.08 0.00 0.00 4.26
4028 5370 2.202171 GAACGGTTGTCATGCGCG 60.202 61.111 0.00 0.00 0.00 6.86
4029 5371 2.202171 CGAACGGTTGTCATGCGC 60.202 61.111 0.00 0.00 0.00 6.09
4030 5372 0.450482 GAACGAACGGTTGTCATGCG 60.450 55.000 0.00 0.00 39.50 4.73
4035 5377 2.030451 AGGTAGAGAACGAACGGTTGTC 60.030 50.000 0.00 0.00 46.39 3.18
4036 5378 1.959282 AGGTAGAGAACGAACGGTTGT 59.041 47.619 0.00 0.00 39.50 3.32
4037 5379 2.719426 AGGTAGAGAACGAACGGTTG 57.281 50.000 0.00 0.00 39.50 3.77
4038 5380 2.363359 ACAAGGTAGAGAACGAACGGTT 59.637 45.455 0.00 0.00 42.96 4.44
4039 5381 1.959282 ACAAGGTAGAGAACGAACGGT 59.041 47.619 0.00 0.00 0.00 4.83
4040 5382 2.030540 TCACAAGGTAGAGAACGAACGG 60.031 50.000 0.00 0.00 0.00 4.44
4076 5422 3.219281 ACTATGTTGCGAAAAGTTGGGT 58.781 40.909 0.00 0.00 0.00 4.51
4081 5427 5.751243 ACAAGAACTATGTTGCGAAAAGT 57.249 34.783 0.00 0.00 33.27 2.66
4091 5437 2.766313 TGAGCGCAACAAGAACTATGT 58.234 42.857 11.47 0.00 0.00 2.29
4097 5443 1.795170 GCCCTTGAGCGCAACAAGAA 61.795 55.000 32.97 11.39 44.92 2.52
4099 5445 1.799258 AAGCCCTTGAGCGCAACAAG 61.799 55.000 28.08 28.08 42.72 3.16
4112 5458 3.690745 GCTCATGTTGCAAGCCCT 58.309 55.556 0.00 0.00 0.00 5.19
4131 5477 2.622942 ACGTTTTGATGGAGTGCAACAT 59.377 40.909 0.00 0.00 41.43 2.71
4132 5478 2.020720 ACGTTTTGATGGAGTGCAACA 58.979 42.857 0.00 0.00 41.43 3.33
4185 5531 0.106217 ACAGAGGGGGTTTGTTGTGG 60.106 55.000 0.00 0.00 0.00 4.17
4196 5542 2.240162 GACGGGTAGCAACAGAGGGG 62.240 65.000 0.00 0.00 0.00 4.79
4208 5554 2.353208 GCCATTTTGCAAATGACGGGTA 60.353 45.455 13.65 0.00 0.00 3.69
4213 5559 2.181954 TGGGCCATTTTGCAAATGAC 57.818 45.000 13.65 6.93 0.00 3.06
4214 5560 2.040012 ACATGGGCCATTTTGCAAATGA 59.960 40.909 18.46 0.00 32.79 2.57
4215 5561 2.438411 ACATGGGCCATTTTGCAAATG 58.562 42.857 18.46 12.68 33.94 2.32
4216 5562 2.820787 CAACATGGGCCATTTTGCAAAT 59.179 40.909 27.21 0.00 27.41 2.32
4217 5563 2.228059 CAACATGGGCCATTTTGCAAA 58.772 42.857 27.21 8.05 27.41 3.68
4218 5564 1.142465 ACAACATGGGCCATTTTGCAA 59.858 42.857 34.25 0.00 35.65 4.08
4219 5565 0.763652 ACAACATGGGCCATTTTGCA 59.236 45.000 34.25 2.50 35.65 4.08
4220 5566 1.158434 CACAACATGGGCCATTTTGC 58.842 50.000 34.25 0.00 35.65 3.68
4221 5567 2.835580 TCACAACATGGGCCATTTTG 57.164 45.000 33.22 33.22 37.49 2.44
4222 5568 2.550639 GCTTCACAACATGGGCCATTTT 60.551 45.455 18.46 14.96 0.00 1.82
4223 5569 1.002315 GCTTCACAACATGGGCCATTT 59.998 47.619 18.46 8.10 0.00 2.32
4224 5570 0.609662 GCTTCACAACATGGGCCATT 59.390 50.000 18.46 0.15 0.00 3.16
4225 5571 0.251922 AGCTTCACAACATGGGCCAT 60.252 50.000 14.78 14.78 0.00 4.40
4226 5572 0.895100 GAGCTTCACAACATGGGCCA 60.895 55.000 9.61 9.61 0.00 5.36
4227 5573 1.598701 GGAGCTTCACAACATGGGCC 61.599 60.000 0.00 0.00 0.00 5.80
4228 5574 0.610232 AGGAGCTTCACAACATGGGC 60.610 55.000 0.00 0.00 0.00 5.36
4229 5575 1.915141 AAGGAGCTTCACAACATGGG 58.085 50.000 0.00 0.00 0.00 4.00
4230 5576 2.608752 GCAAAGGAGCTTCACAACATGG 60.609 50.000 0.00 0.00 0.00 3.66
4231 5577 2.034939 TGCAAAGGAGCTTCACAACATG 59.965 45.455 0.00 0.00 34.99 3.21
4232 5578 2.309613 TGCAAAGGAGCTTCACAACAT 58.690 42.857 0.00 0.00 34.99 2.71
4233 5579 1.761449 TGCAAAGGAGCTTCACAACA 58.239 45.000 0.00 0.00 34.99 3.33
4234 5580 2.159254 TGTTGCAAAGGAGCTTCACAAC 60.159 45.455 0.00 11.29 38.50 3.32
4235 5581 2.098614 TGTTGCAAAGGAGCTTCACAA 58.901 42.857 0.00 0.00 34.99 3.33
4236 5582 1.761449 TGTTGCAAAGGAGCTTCACA 58.239 45.000 0.00 0.00 34.99 3.58
4237 5583 2.294233 TCATGTTGCAAAGGAGCTTCAC 59.706 45.455 0.00 0.00 34.99 3.18
4238 5584 2.294233 GTCATGTTGCAAAGGAGCTTCA 59.706 45.455 0.00 0.00 34.99 3.02
4239 5585 2.666619 CGTCATGTTGCAAAGGAGCTTC 60.667 50.000 0.00 0.00 34.99 3.86
4240 5586 1.267806 CGTCATGTTGCAAAGGAGCTT 59.732 47.619 0.00 0.00 34.99 3.74
4241 5587 0.877071 CGTCATGTTGCAAAGGAGCT 59.123 50.000 0.00 0.00 34.99 4.09
4242 5588 0.730494 GCGTCATGTTGCAAAGGAGC 60.730 55.000 0.00 0.00 0.00 4.70
4243 5589 0.453282 CGCGTCATGTTGCAAAGGAG 60.453 55.000 0.00 0.00 0.00 3.69
4281 5657 2.195567 CCATAATGGTGGCCCGCTG 61.196 63.158 0.00 0.00 31.35 5.18
4336 5713 1.789464 CCGCATACGAGATCTTTGAGC 59.211 52.381 0.00 0.00 43.93 4.26
4340 5717 2.794981 CGTGACCGCATACGAGATCTTT 60.795 50.000 0.00 0.00 43.93 2.52
4342 5719 0.308068 CGTGACCGCATACGAGATCT 59.692 55.000 0.00 0.00 43.93 2.75
4345 5722 1.022982 AGACGTGACCGCATACGAGA 61.023 55.000 0.00 0.00 43.93 4.04
4348 5725 1.872234 CCAGACGTGACCGCATACG 60.872 63.158 0.00 0.00 45.19 3.06
4356 5733 4.961511 TGTGCCGCCAGACGTGAC 62.962 66.667 0.00 0.00 41.42 3.67
4357 5734 2.161078 TATTGTGCCGCCAGACGTGA 62.161 55.000 0.00 0.00 41.42 4.35
4358 5735 1.695893 CTATTGTGCCGCCAGACGTG 61.696 60.000 0.00 0.00 41.42 4.49
4360 5737 2.813179 GCTATTGTGCCGCCAGACG 61.813 63.158 0.00 0.00 43.15 4.18
4361 5738 2.472909 GGCTATTGTGCCGCCAGAC 61.473 63.158 0.00 0.00 43.74 3.51
4395 5780 0.176680 ACGATCTTCAGCTCCGCAAT 59.823 50.000 0.00 0.00 0.00 3.56
4402 5787 2.061773 CAACAACGACGATCTTCAGCT 58.938 47.619 0.00 0.00 0.00 4.24
4403 5788 1.792949 ACAACAACGACGATCTTCAGC 59.207 47.619 0.00 0.00 0.00 4.26
4404 5789 3.787826 CAACAACAACGACGATCTTCAG 58.212 45.455 0.00 0.00 0.00 3.02
4405 5790 2.033236 GCAACAACAACGACGATCTTCA 60.033 45.455 0.00 0.00 0.00 3.02
4406 5791 2.033236 TGCAACAACAACGACGATCTTC 60.033 45.455 0.00 0.00 0.00 2.87
4407 5792 1.937223 TGCAACAACAACGACGATCTT 59.063 42.857 0.00 0.00 0.00 2.40
4408 5793 1.577468 TGCAACAACAACGACGATCT 58.423 45.000 0.00 0.00 0.00 2.75
4409 5794 2.376915 TTGCAACAACAACGACGATC 57.623 45.000 0.00 0.00 0.00 3.69
4410 5795 2.353269 TCTTTGCAACAACAACGACGAT 59.647 40.909 0.00 0.00 0.00 3.73
4411 5796 1.732809 TCTTTGCAACAACAACGACGA 59.267 42.857 0.00 0.00 0.00 4.20
4412 5797 2.166741 TCTTTGCAACAACAACGACG 57.833 45.000 0.00 0.00 0.00 5.12
4413 5798 3.952535 AGATCTTTGCAACAACAACGAC 58.047 40.909 0.00 0.00 31.54 4.34
4414 5799 5.700832 AGATAGATCTTTGCAACAACAACGA 59.299 36.000 0.00 0.00 31.97 3.85
4415 5800 5.931532 AGATAGATCTTTGCAACAACAACG 58.068 37.500 0.00 0.00 31.97 4.10
4416 5801 6.583806 CCAAGATAGATCTTTGCAACAACAAC 59.416 38.462 0.00 0.00 44.28 3.32
4417 5802 6.265196 ACCAAGATAGATCTTTGCAACAACAA 59.735 34.615 0.00 0.00 44.28 2.83
4418 5803 5.769662 ACCAAGATAGATCTTTGCAACAACA 59.230 36.000 0.00 0.00 44.28 3.33
4419 5804 6.259550 ACCAAGATAGATCTTTGCAACAAC 57.740 37.500 0.00 0.00 44.28 3.32
4420 5805 6.265196 ACAACCAAGATAGATCTTTGCAACAA 59.735 34.615 0.00 0.00 44.28 2.83
4421 5806 5.769662 ACAACCAAGATAGATCTTTGCAACA 59.230 36.000 0.00 0.00 44.28 3.33
4422 5807 6.259550 ACAACCAAGATAGATCTTTGCAAC 57.740 37.500 0.00 0.00 44.28 4.17
4423 5808 5.415701 GGACAACCAAGATAGATCTTTGCAA 59.584 40.000 0.00 0.00 44.28 4.08
4424 5809 4.943705 GGACAACCAAGATAGATCTTTGCA 59.056 41.667 0.00 0.00 44.28 4.08
4425 5810 4.336713 GGGACAACCAAGATAGATCTTTGC 59.663 45.833 0.00 0.00 44.28 3.68
4426 5811 5.587844 CAGGGACAACCAAGATAGATCTTTG 59.412 44.000 0.00 0.00 44.84 2.77
4427 5812 5.488919 TCAGGGACAACCAAGATAGATCTTT 59.511 40.000 0.00 0.00 44.84 2.52
4428 5813 7.825397 CCTCAGGGACAACCAAGATAGATCTT 61.825 46.154 0.00 0.00 43.89 2.40
4429 5814 4.624913 TCAGGGACAACCAAGATAGATCT 58.375 43.478 0.00 0.00 43.89 2.75
4430 5815 4.202305 CCTCAGGGACAACCAAGATAGATC 60.202 50.000 0.00 0.00 43.89 2.75
4431 5816 3.713764 CCTCAGGGACAACCAAGATAGAT 59.286 47.826 0.00 0.00 43.89 1.98
4432 5817 3.107601 CCTCAGGGACAACCAAGATAGA 58.892 50.000 0.00 0.00 43.89 1.98
4433 5818 3.550437 CCTCAGGGACAACCAAGATAG 57.450 52.381 0.00 0.00 43.89 2.08
4447 5832 0.911769 TGATGTTGTAGGCCCTCAGG 59.088 55.000 0.00 0.00 0.00 3.86
4448 5833 2.486191 GGATGATGTTGTAGGCCCTCAG 60.486 54.545 0.00 0.00 0.00 3.35
4449 5834 1.490490 GGATGATGTTGTAGGCCCTCA 59.510 52.381 0.00 0.00 0.00 3.86
4450 5835 1.202818 GGGATGATGTTGTAGGCCCTC 60.203 57.143 0.00 0.00 0.00 4.30
4451 5836 0.846693 GGGATGATGTTGTAGGCCCT 59.153 55.000 0.00 0.00 0.00 5.19
4452 5837 0.535102 CGGGATGATGTTGTAGGCCC 60.535 60.000 0.00 0.00 0.00 5.80
4453 5838 0.535102 CCGGGATGATGTTGTAGGCC 60.535 60.000 0.00 0.00 0.00 5.19
4454 5839 1.166531 GCCGGGATGATGTTGTAGGC 61.167 60.000 2.18 0.00 36.32 3.93
4455 5840 0.180171 TGCCGGGATGATGTTGTAGG 59.820 55.000 2.18 0.00 0.00 3.18
4456 5841 1.586422 CTGCCGGGATGATGTTGTAG 58.414 55.000 2.18 0.00 0.00 2.74
4457 5842 0.180171 CCTGCCGGGATGATGTTGTA 59.820 55.000 2.18 0.00 37.23 2.41
4458 5843 1.077501 CCTGCCGGGATGATGTTGT 60.078 57.895 2.18 0.00 37.23 3.32
4459 5844 1.224315 TCCTGCCGGGATGATGTTG 59.776 57.895 2.18 0.00 39.58 3.33
4460 5845 3.739922 TCCTGCCGGGATGATGTT 58.260 55.556 2.18 0.00 39.58 2.71
4468 5853 2.844362 TAGCTGGATCCTGCCGGG 60.844 66.667 32.95 9.75 40.98 5.73
4469 5854 2.423446 GTAGCTGGATCCTGCCGG 59.577 66.667 32.95 6.32 40.98 6.13
4470 5855 2.423446 GGTAGCTGGATCCTGCCG 59.577 66.667 32.95 12.18 40.98 5.69
4471 5856 2.423446 CGGTAGCTGGATCCTGCC 59.577 66.667 32.95 21.46 40.98 4.85
4472 5857 2.280457 GCGGTAGCTGGATCCTGC 60.280 66.667 30.59 30.59 41.01 4.85
4473 5858 1.762522 ATGGCGGTAGCTGGATCCTG 61.763 60.000 14.23 14.14 44.37 3.86
4474 5859 1.460305 ATGGCGGTAGCTGGATCCT 60.460 57.895 14.23 0.00 44.37 3.24
4475 5860 1.004440 GATGGCGGTAGCTGGATCC 60.004 63.158 4.20 4.20 44.37 3.36
4476 5861 1.373497 CGATGGCGGTAGCTGGATC 60.373 63.158 0.00 0.00 44.37 3.36
4477 5862 2.088674 GACGATGGCGGTAGCTGGAT 62.089 60.000 0.00 0.00 44.37 3.41
4478 5863 2.758327 ACGATGGCGGTAGCTGGA 60.758 61.111 0.00 0.00 44.37 3.86
4479 5864 2.279517 GACGATGGCGGTAGCTGG 60.280 66.667 0.00 0.00 44.37 4.85
4480 5865 2.279517 GGACGATGGCGGTAGCTG 60.280 66.667 0.00 0.00 44.37 4.24
4481 5866 3.537874 GGGACGATGGCGGTAGCT 61.538 66.667 0.00 0.00 44.37 3.32
4482 5867 3.090219 AAGGGACGATGGCGGTAGC 62.090 63.158 0.00 0.00 43.17 3.58
4483 5868 1.227263 CAAGGGACGATGGCGGTAG 60.227 63.158 0.00 0.00 43.17 3.18
4484 5869 2.897207 CAAGGGACGATGGCGGTA 59.103 61.111 0.00 0.00 43.17 4.02
4485 5870 4.778143 GCAAGGGACGATGGCGGT 62.778 66.667 0.00 0.00 43.17 5.68
4488 5873 4.115199 AGGGCAAGGGACGATGGC 62.115 66.667 0.00 0.00 42.72 4.40
4489 5874 2.124570 CAGGGCAAGGGACGATGG 60.125 66.667 0.00 0.00 0.00 3.51
4490 5875 2.124570 CCAGGGCAAGGGACGATG 60.125 66.667 0.00 0.00 0.00 3.84
4491 5876 4.115199 GCCAGGGCAAGGGACGAT 62.115 66.667 5.20 0.00 41.49 3.73
4496 5881 4.883354 GATCGGCCAGGGCAAGGG 62.883 72.222 14.59 0.00 44.11 3.95
4497 5882 3.801997 AGATCGGCCAGGGCAAGG 61.802 66.667 14.59 0.78 44.11 3.61
4498 5883 2.515523 CAGATCGGCCAGGGCAAG 60.516 66.667 14.59 5.68 44.11 4.01
4499 5884 4.802051 GCAGATCGGCCAGGGCAA 62.802 66.667 14.59 0.00 44.11 4.52
4501 5886 4.802051 TTGCAGATCGGCCAGGGC 62.802 66.667 15.47 1.81 41.06 5.19
4502 5887 2.825836 GTTGCAGATCGGCCAGGG 60.826 66.667 15.47 0.00 0.00 4.45
4503 5888 0.179048 TATGTTGCAGATCGGCCAGG 60.179 55.000 15.47 0.00 0.00 4.45
4504 5889 0.940126 GTATGTTGCAGATCGGCCAG 59.060 55.000 15.47 0.00 0.00 4.85
4505 5890 0.463654 GGTATGTTGCAGATCGGCCA 60.464 55.000 15.47 7.28 0.00 5.36
4506 5891 1.166531 GGGTATGTTGCAGATCGGCC 61.167 60.000 15.47 0.00 0.00 6.13
4507 5892 0.179045 AGGGTATGTTGCAGATCGGC 60.179 55.000 11.23 11.23 0.00 5.54
4508 5893 1.134401 ACAGGGTATGTTGCAGATCGG 60.134 52.381 0.00 0.00 39.96 4.18
4509 5894 1.935873 CACAGGGTATGTTGCAGATCG 59.064 52.381 0.00 0.00 41.41 3.69
4510 5895 2.991250 ACACAGGGTATGTTGCAGATC 58.009 47.619 0.00 0.00 41.41 2.75
4511 5896 3.439857 AACACAGGGTATGTTGCAGAT 57.560 42.857 0.00 0.00 41.41 2.90
4512 5897 2.949177 AACACAGGGTATGTTGCAGA 57.051 45.000 0.00 0.00 41.41 4.26
4517 5902 3.894427 TCAAATGCAACACAGGGTATGTT 59.106 39.130 0.00 0.00 41.41 2.71
4518 5903 3.495331 TCAAATGCAACACAGGGTATGT 58.505 40.909 0.00 0.00 45.43 2.29
4519 5904 4.517952 TTCAAATGCAACACAGGGTATG 57.482 40.909 0.00 0.00 0.00 2.39
4520 5905 4.021192 CCTTTCAAATGCAACACAGGGTAT 60.021 41.667 0.00 0.00 0.00 2.73
4521 5906 3.320541 CCTTTCAAATGCAACACAGGGTA 59.679 43.478 0.00 0.00 0.00 3.69
4522 5907 2.102925 CCTTTCAAATGCAACACAGGGT 59.897 45.455 0.00 0.00 0.00 4.34
4523 5908 2.548493 CCCTTTCAAATGCAACACAGGG 60.548 50.000 0.00 0.00 33.98 4.45
4524 5909 2.102925 ACCCTTTCAAATGCAACACAGG 59.897 45.455 0.00 0.00 0.00 4.00
4525 5910 3.457610 ACCCTTTCAAATGCAACACAG 57.542 42.857 0.00 0.00 0.00 3.66
4526 5911 3.529533 CAACCCTTTCAAATGCAACACA 58.470 40.909 0.00 0.00 0.00 3.72
4527 5912 2.287644 GCAACCCTTTCAAATGCAACAC 59.712 45.455 0.00 0.00 37.00 3.32
4528 5913 2.093288 TGCAACCCTTTCAAATGCAACA 60.093 40.909 0.00 0.00 43.39 3.33
4529 5914 2.559440 TGCAACCCTTTCAAATGCAAC 58.441 42.857 0.00 0.00 43.39 4.17
4530 5915 2.996249 TGCAACCCTTTCAAATGCAA 57.004 40.000 0.00 0.00 43.39 4.08
4531 5916 2.433604 TCTTGCAACCCTTTCAAATGCA 59.566 40.909 0.00 0.00 44.54 3.96
4532 5917 3.110447 TCTTGCAACCCTTTCAAATGC 57.890 42.857 0.00 0.00 37.52 3.56
4533 5918 5.504501 GCTTTTCTTGCAACCCTTTCAAATG 60.505 40.000 0.00 0.00 0.00 2.32
4534 5919 4.576053 GCTTTTCTTGCAACCCTTTCAAAT 59.424 37.500 0.00 0.00 0.00 2.32
4535 5920 3.938334 GCTTTTCTTGCAACCCTTTCAAA 59.062 39.130 0.00 0.00 0.00 2.69
4536 5921 3.530535 GCTTTTCTTGCAACCCTTTCAA 58.469 40.909 0.00 0.00 0.00 2.69
4537 5922 2.158971 GGCTTTTCTTGCAACCCTTTCA 60.159 45.455 0.00 0.00 0.00 2.69
4538 5923 2.483876 GGCTTTTCTTGCAACCCTTTC 58.516 47.619 0.00 0.00 0.00 2.62
4539 5924 1.140852 GGGCTTTTCTTGCAACCCTTT 59.859 47.619 12.22 0.00 34.34 3.11
4540 5925 0.758734 GGGCTTTTCTTGCAACCCTT 59.241 50.000 12.22 0.00 34.34 3.95
4541 5926 0.398381 TGGGCTTTTCTTGCAACCCT 60.398 50.000 18.43 0.00 38.23 4.34
4542 5927 0.686789 ATGGGCTTTTCTTGCAACCC 59.313 50.000 12.52 12.52 37.88 4.11
4543 5928 1.070601 ACATGGGCTTTTCTTGCAACC 59.929 47.619 0.00 0.00 0.00 3.77
4544 5929 2.137523 CACATGGGCTTTTCTTGCAAC 58.862 47.619 0.00 0.00 0.00 4.17
4545 5930 1.540797 GCACATGGGCTTTTCTTGCAA 60.541 47.619 14.19 0.00 0.00 4.08
4546 5931 0.033781 GCACATGGGCTTTTCTTGCA 59.966 50.000 14.19 0.00 0.00 4.08
4547 5932 0.033781 TGCACATGGGCTTTTCTTGC 59.966 50.000 22.81 6.85 34.04 4.01
4548 5933 2.529780 TTGCACATGGGCTTTTCTTG 57.470 45.000 22.81 0.00 34.04 3.02
4549 5934 2.807837 GCTTTGCACATGGGCTTTTCTT 60.808 45.455 22.81 0.00 34.04 2.52
4550 5935 1.270465 GCTTTGCACATGGGCTTTTCT 60.270 47.619 22.81 0.00 34.04 2.52
4551 5936 1.150827 GCTTTGCACATGGGCTTTTC 58.849 50.000 22.81 4.28 34.04 2.29
4552 5937 0.760572 AGCTTTGCACATGGGCTTTT 59.239 45.000 22.81 0.00 34.04 2.27
4553 5938 0.034337 CAGCTTTGCACATGGGCTTT 59.966 50.000 22.81 0.00 34.04 3.51
4554 5939 1.669440 CAGCTTTGCACATGGGCTT 59.331 52.632 22.81 0.00 34.04 4.35
4555 5940 2.280552 CCAGCTTTGCACATGGGCT 61.281 57.895 22.81 0.00 34.04 5.19
4556 5941 2.263540 CCAGCTTTGCACATGGGC 59.736 61.111 14.67 14.67 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.