Multiple sequence alignment - TraesCS2A01G121000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G121000 chr2A 100.000 5507 0 0 1 5507 70881920 70876414 0.000000e+00 10170
1 TraesCS2A01G121000 chr2D 94.179 3281 118 36 268 3517 71771903 71768665 0.000000e+00 4933
2 TraesCS2A01G121000 chr2D 93.372 1554 78 13 3961 5507 71767880 71766345 0.000000e+00 2276
3 TraesCS2A01G121000 chr2D 97.931 290 6 0 3585 3874 71768254 71767965 2.290000e-138 503
4 TraesCS2A01G121000 chr2B 95.518 1919 71 6 1961 3873 108240679 108238770 0.000000e+00 3053
5 TraesCS2A01G121000 chr2B 93.282 1682 72 23 268 1928 108242341 108240680 0.000000e+00 2442
6 TraesCS2A01G121000 chr2B 92.026 1555 69 32 3961 5507 108238728 108237221 0.000000e+00 2134
7 TraesCS2A01G121000 chr2B 86.260 262 27 9 276 531 108166127 108165869 5.430000e-70 276
8 TraesCS2A01G121000 chr5B 92.241 232 15 3 3105 3334 691355584 691355354 5.320000e-85 326
9 TraesCS2A01G121000 chr3B 92.241 232 15 3 3105 3334 300293162 300293392 5.320000e-85 326
10 TraesCS2A01G121000 chr3B 92.241 232 15 3 3105 3334 771969246 771969476 5.320000e-85 326
11 TraesCS2A01G121000 chr4A 91.286 241 14 3 3095 3333 504673101 504672866 6.880000e-84 322
12 TraesCS2A01G121000 chr7A 91.286 241 12 3 3095 3333 172072030 172072263 2.480000e-83 320
13 TraesCS2A01G121000 chr7A 91.286 241 12 5 3095 3333 667167245 667167012 2.480000e-83 320
14 TraesCS2A01G121000 chr1B 90.871 241 13 3 3095 3333 102155930 102156163 1.150000e-81 315


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G121000 chr2A 70876414 70881920 5506 True 10170.000000 10170 100.000000 1 5507 1 chr2A.!!$R1 5506
1 TraesCS2A01G121000 chr2D 71766345 71771903 5558 True 2570.666667 4933 95.160667 268 5507 3 chr2D.!!$R1 5239
2 TraesCS2A01G121000 chr2B 108237221 108242341 5120 True 2543.000000 3053 93.608667 268 5507 3 chr2B.!!$R2 5239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.035036 TTATTGACACGGCCCAACGA 59.965 50.000 0.00 0.00 37.61 3.85 F
258 259 0.322648 GTTGCACTAACCGGGGTAGT 59.677 55.000 19.07 19.07 33.01 2.73 F
789 801 0.550147 TTTCTTCCCTCCCTCCCCAG 60.550 60.000 0.00 0.00 0.00 4.45 F
1496 1524 0.635731 CGTGTGCTTCGATCTCGTTC 59.364 55.000 0.00 0.00 40.80 3.95 F
2238 2277 1.002201 TCTCGGACTTCTCTGACGACT 59.998 52.381 0.00 0.00 0.00 4.18 F
3904 4304 0.109723 TTTTCCCCCTCTTGACCACG 59.890 55.000 0.00 0.00 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1524 1552 1.134220 GGCCATTTCTGATACGGTGGA 60.134 52.381 0.00 0.0 0.00 4.02 R
2194 2233 1.471676 CCCCGCAGAACAGACATCTAC 60.472 57.143 0.00 0.0 0.00 2.59 R
2628 2679 1.149854 AACACCTTCCCCGAACACC 59.850 57.895 0.00 0.0 0.00 4.16 R
3233 3287 0.176910 TCTCTGTCACGTTGTGCCAA 59.823 50.000 0.00 0.0 32.98 4.52 R
4122 4532 0.036010 ACGTTCAGAATGGCCTCAGG 60.036 55.000 3.32 0.0 36.16 3.86 R
5023 5450 0.036732 AGGCAATTGCAACTCGGAGA 59.963 50.000 30.32 0.0 44.36 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.394836 GGGGGTCTGCTTCGAGCT 61.395 66.667 8.07 0.00 42.97 4.09
48 49 2.125350 GGGGTCTGCTTCGAGCTG 60.125 66.667 0.00 7.61 42.97 4.24
49 50 2.817396 GGGTCTGCTTCGAGCTGC 60.817 66.667 0.00 0.00 42.97 5.25
50 51 2.047844 GGTCTGCTTCGAGCTGCA 60.048 61.111 1.02 8.97 42.97 4.41
54 55 3.054704 TGCTTCGAGCTGCAGACT 58.945 55.556 20.43 14.36 42.97 3.24
55 56 1.373873 TGCTTCGAGCTGCAGACTG 60.374 57.895 20.43 5.46 42.97 3.51
56 57 2.738695 GCTTCGAGCTGCAGACTGC 61.739 63.158 20.43 20.86 45.29 4.40
65 66 2.359230 GCAGACTGCACAGGTCCC 60.359 66.667 22.62 0.00 44.26 4.46
66 67 3.150949 CAGACTGCACAGGTCCCA 58.849 61.111 2.21 0.00 34.56 4.37
67 68 1.302033 CAGACTGCACAGGTCCCAC 60.302 63.158 2.21 0.00 34.56 4.61
68 69 1.460305 AGACTGCACAGGTCCCACT 60.460 57.895 2.21 0.00 34.56 4.00
69 70 1.056700 AGACTGCACAGGTCCCACTT 61.057 55.000 2.21 0.00 34.56 3.16
70 71 0.179018 GACTGCACAGGTCCCACTTT 60.179 55.000 2.21 0.00 0.00 2.66
71 72 0.258774 ACTGCACAGGTCCCACTTTT 59.741 50.000 2.21 0.00 0.00 2.27
72 73 0.954452 CTGCACAGGTCCCACTTTTC 59.046 55.000 0.00 0.00 0.00 2.29
73 74 0.550914 TGCACAGGTCCCACTTTTCT 59.449 50.000 0.00 0.00 0.00 2.52
74 75 1.239347 GCACAGGTCCCACTTTTCTC 58.761 55.000 0.00 0.00 0.00 2.87
75 76 1.476833 GCACAGGTCCCACTTTTCTCA 60.477 52.381 0.00 0.00 0.00 3.27
76 77 2.222027 CACAGGTCCCACTTTTCTCAC 58.778 52.381 0.00 0.00 0.00 3.51
77 78 2.127708 ACAGGTCCCACTTTTCTCACT 58.872 47.619 0.00 0.00 0.00 3.41
78 79 2.104963 ACAGGTCCCACTTTTCTCACTC 59.895 50.000 0.00 0.00 0.00 3.51
79 80 1.344763 AGGTCCCACTTTTCTCACTCG 59.655 52.381 0.00 0.00 0.00 4.18
80 81 1.343465 GGTCCCACTTTTCTCACTCGA 59.657 52.381 0.00 0.00 0.00 4.04
81 82 2.405172 GTCCCACTTTTCTCACTCGAC 58.595 52.381 0.00 0.00 0.00 4.20
82 83 1.343465 TCCCACTTTTCTCACTCGACC 59.657 52.381 0.00 0.00 0.00 4.79
83 84 1.070134 CCCACTTTTCTCACTCGACCA 59.930 52.381 0.00 0.00 0.00 4.02
84 85 2.289694 CCCACTTTTCTCACTCGACCAT 60.290 50.000 0.00 0.00 0.00 3.55
85 86 3.403038 CCACTTTTCTCACTCGACCATT 58.597 45.455 0.00 0.00 0.00 3.16
86 87 3.815401 CCACTTTTCTCACTCGACCATTT 59.185 43.478 0.00 0.00 0.00 2.32
87 88 4.275936 CCACTTTTCTCACTCGACCATTTT 59.724 41.667 0.00 0.00 0.00 1.82
88 89 5.207768 CACTTTTCTCACTCGACCATTTTG 58.792 41.667 0.00 0.00 0.00 2.44
89 90 3.896648 TTTCTCACTCGACCATTTTGC 57.103 42.857 0.00 0.00 0.00 3.68
90 91 1.808411 TCTCACTCGACCATTTTGCC 58.192 50.000 0.00 0.00 0.00 4.52
91 92 1.071542 TCTCACTCGACCATTTTGCCA 59.928 47.619 0.00 0.00 0.00 4.92
92 93 1.197721 CTCACTCGACCATTTTGCCAC 59.802 52.381 0.00 0.00 0.00 5.01
93 94 0.110238 CACTCGACCATTTTGCCACG 60.110 55.000 0.00 0.00 0.00 4.94
94 95 0.250124 ACTCGACCATTTTGCCACGA 60.250 50.000 0.00 0.00 0.00 4.35
95 96 0.165944 CTCGACCATTTTGCCACGAC 59.834 55.000 0.00 0.00 0.00 4.34
96 97 1.209127 CGACCATTTTGCCACGACC 59.791 57.895 0.00 0.00 0.00 4.79
97 98 1.209127 GACCATTTTGCCACGACCG 59.791 57.895 0.00 0.00 0.00 4.79
98 99 1.228003 ACCATTTTGCCACGACCGA 60.228 52.632 0.00 0.00 0.00 4.69
99 100 1.209127 CCATTTTGCCACGACCGAC 59.791 57.895 0.00 0.00 0.00 4.79
100 101 1.511318 CCATTTTGCCACGACCGACA 61.511 55.000 0.00 0.00 0.00 4.35
101 102 0.309302 CATTTTGCCACGACCGACAA 59.691 50.000 0.00 0.00 0.00 3.18
102 103 1.068610 CATTTTGCCACGACCGACAAT 60.069 47.619 0.00 0.00 0.00 2.71
103 104 0.309302 TTTTGCCACGACCGACAATG 59.691 50.000 0.00 0.00 0.00 2.82
104 105 0.533085 TTTGCCACGACCGACAATGA 60.533 50.000 0.00 0.00 0.00 2.57
105 106 0.533085 TTGCCACGACCGACAATGAA 60.533 50.000 0.00 0.00 0.00 2.57
106 107 1.225376 TGCCACGACCGACAATGAAC 61.225 55.000 0.00 0.00 0.00 3.18
107 108 1.225376 GCCACGACCGACAATGAACA 61.225 55.000 0.00 0.00 0.00 3.18
108 109 0.790207 CCACGACCGACAATGAACAG 59.210 55.000 0.00 0.00 0.00 3.16
109 110 0.790207 CACGACCGACAATGAACAGG 59.210 55.000 0.00 0.00 0.00 4.00
110 111 0.391597 ACGACCGACAATGAACAGGT 59.608 50.000 0.00 0.00 38.00 4.00
111 112 0.790207 CGACCGACAATGAACAGGTG 59.210 55.000 0.00 0.00 35.00 4.00
112 113 0.517316 GACCGACAATGAACAGGTGC 59.483 55.000 0.00 0.00 35.00 5.01
113 114 0.179032 ACCGACAATGAACAGGTGCA 60.179 50.000 0.00 0.00 33.37 4.57
114 115 0.238289 CCGACAATGAACAGGTGCAC 59.762 55.000 8.80 8.80 0.00 4.57
115 116 0.943673 CGACAATGAACAGGTGCACA 59.056 50.000 20.43 0.00 0.00 4.57
116 117 1.334059 CGACAATGAACAGGTGCACAC 60.334 52.381 20.43 8.23 0.00 3.82
117 118 1.675483 GACAATGAACAGGTGCACACA 59.325 47.619 20.43 10.36 0.00 3.72
118 119 1.405105 ACAATGAACAGGTGCACACAC 59.595 47.619 20.43 0.61 46.66 3.82
128 129 1.264672 GTGCACACACAAACGTTTCC 58.735 50.000 13.17 0.00 46.61 3.13
129 130 1.135517 GTGCACACACAAACGTTTCCT 60.136 47.619 13.17 0.00 46.61 3.36
130 131 2.096174 GTGCACACACAAACGTTTCCTA 59.904 45.455 13.17 0.00 46.61 2.94
131 132 2.096174 TGCACACACAAACGTTTCCTAC 59.904 45.455 11.37 0.00 0.00 3.18
132 133 2.096174 GCACACACAAACGTTTCCTACA 59.904 45.455 11.37 0.00 0.00 2.74
133 134 3.242936 GCACACACAAACGTTTCCTACAT 60.243 43.478 11.37 0.00 0.00 2.29
134 135 4.278858 CACACACAAACGTTTCCTACATG 58.721 43.478 11.37 1.03 0.00 3.21
135 136 3.314080 ACACACAAACGTTTCCTACATGG 59.686 43.478 11.37 0.00 37.10 3.66
136 137 2.882137 ACACAAACGTTTCCTACATGGG 59.118 45.455 11.37 2.24 36.20 4.00
137 138 2.882137 CACAAACGTTTCCTACATGGGT 59.118 45.455 11.37 0.00 36.20 4.51
138 139 2.882137 ACAAACGTTTCCTACATGGGTG 59.118 45.455 11.37 0.00 36.20 4.61
139 140 2.882137 CAAACGTTTCCTACATGGGTGT 59.118 45.455 11.37 0.00 42.39 4.16
140 141 2.943036 ACGTTTCCTACATGGGTGTT 57.057 45.000 0.00 0.00 39.77 3.32
141 142 3.217681 ACGTTTCCTACATGGGTGTTT 57.782 42.857 0.00 0.00 39.77 2.83
142 143 3.558033 ACGTTTCCTACATGGGTGTTTT 58.442 40.909 0.00 0.00 39.77 2.43
143 144 3.955551 ACGTTTCCTACATGGGTGTTTTT 59.044 39.130 0.00 0.00 39.77 1.94
144 145 4.202070 ACGTTTCCTACATGGGTGTTTTTG 60.202 41.667 0.00 0.00 39.77 2.44
145 146 4.036971 CGTTTCCTACATGGGTGTTTTTGA 59.963 41.667 0.00 0.00 39.77 2.69
146 147 5.450688 CGTTTCCTACATGGGTGTTTTTGAA 60.451 40.000 0.00 0.00 39.77 2.69
147 148 6.342111 GTTTCCTACATGGGTGTTTTTGAAA 58.658 36.000 0.00 0.00 39.77 2.69
148 149 6.546428 TTCCTACATGGGTGTTTTTGAAAA 57.454 33.333 0.00 0.00 39.77 2.29
149 150 5.908341 TCCTACATGGGTGTTTTTGAAAAC 58.092 37.500 11.41 11.41 41.35 2.43
150 151 5.450688 TCCTACATGGGTGTTTTTGAAAACG 60.451 40.000 12.98 2.71 42.55 3.60
158 159 2.677619 GTTTTTGAAAACGCAGCAACG 58.322 42.857 3.84 0.00 38.89 4.10
168 169 3.183237 ACGCAGCAACGTTTATTCTTC 57.817 42.857 0.00 0.00 45.75 2.87
169 170 2.546368 ACGCAGCAACGTTTATTCTTCA 59.454 40.909 0.00 0.00 45.75 3.02
170 171 3.188460 ACGCAGCAACGTTTATTCTTCAT 59.812 39.130 0.00 0.00 45.75 2.57
171 172 3.539563 CGCAGCAACGTTTATTCTTCATG 59.460 43.478 0.00 0.00 0.00 3.07
172 173 4.475944 GCAGCAACGTTTATTCTTCATGT 58.524 39.130 0.00 0.00 0.00 3.21
173 174 4.917415 GCAGCAACGTTTATTCTTCATGTT 59.083 37.500 0.00 0.00 0.00 2.71
174 175 6.083630 GCAGCAACGTTTATTCTTCATGTTA 58.916 36.000 0.00 0.00 0.00 2.41
175 176 6.747280 GCAGCAACGTTTATTCTTCATGTTAT 59.253 34.615 0.00 0.00 0.00 1.89
176 177 7.273381 GCAGCAACGTTTATTCTTCATGTTATT 59.727 33.333 0.00 0.00 0.00 1.40
177 178 8.577939 CAGCAACGTTTATTCTTCATGTTATTG 58.422 33.333 0.00 0.00 0.00 1.90
178 179 8.511321 AGCAACGTTTATTCTTCATGTTATTGA 58.489 29.630 0.00 0.00 0.00 2.57
179 180 8.575454 GCAACGTTTATTCTTCATGTTATTGAC 58.425 33.333 0.00 0.00 0.00 3.18
180 181 9.605955 CAACGTTTATTCTTCATGTTATTGACA 57.394 29.630 0.00 0.00 43.71 3.58
181 182 9.607285 AACGTTTATTCTTCATGTTATTGACAC 57.393 29.630 0.00 0.00 42.04 3.67
182 183 7.955324 ACGTTTATTCTTCATGTTATTGACACG 59.045 33.333 0.00 0.00 42.04 4.49
183 184 7.425309 CGTTTATTCTTCATGTTATTGACACGG 59.575 37.037 0.00 0.00 42.04 4.94
184 185 4.678509 TTCTTCATGTTATTGACACGGC 57.321 40.909 0.00 0.00 42.04 5.68
185 186 3.006940 TCTTCATGTTATTGACACGGCC 58.993 45.455 0.00 0.00 42.04 6.13
186 187 1.745232 TCATGTTATTGACACGGCCC 58.255 50.000 0.00 0.00 42.04 5.80
187 188 1.003696 TCATGTTATTGACACGGCCCA 59.996 47.619 0.00 0.00 42.04 5.36
188 189 1.815613 CATGTTATTGACACGGCCCAA 59.184 47.619 0.00 0.00 42.04 4.12
189 190 1.240256 TGTTATTGACACGGCCCAAC 58.760 50.000 0.00 0.00 32.00 3.77
190 191 0.167251 GTTATTGACACGGCCCAACG 59.833 55.000 0.00 0.00 40.31 4.10
191 192 0.035036 TTATTGACACGGCCCAACGA 59.965 50.000 0.00 0.00 37.61 3.85
192 193 0.390603 TATTGACACGGCCCAACGAG 60.391 55.000 0.00 0.00 37.61 4.18
193 194 2.107041 ATTGACACGGCCCAACGAGA 62.107 55.000 0.00 0.00 37.61 4.04
194 195 2.029964 GACACGGCCCAACGAGAA 59.970 61.111 0.00 0.00 37.61 2.87
195 196 1.595929 GACACGGCCCAACGAGAAA 60.596 57.895 0.00 0.00 37.61 2.52
196 197 0.953960 GACACGGCCCAACGAGAAAT 60.954 55.000 0.00 0.00 37.61 2.17
197 198 1.234615 ACACGGCCCAACGAGAAATG 61.235 55.000 0.00 0.00 37.61 2.32
198 199 2.332654 ACGGCCCAACGAGAAATGC 61.333 57.895 0.00 0.00 37.61 3.56
199 200 2.040544 CGGCCCAACGAGAAATGCT 61.041 57.895 0.00 0.00 35.47 3.79
200 201 1.508088 GGCCCAACGAGAAATGCTG 59.492 57.895 0.00 0.00 0.00 4.41
201 202 0.960364 GGCCCAACGAGAAATGCTGA 60.960 55.000 0.00 0.00 0.00 4.26
202 203 1.098050 GCCCAACGAGAAATGCTGAT 58.902 50.000 0.00 0.00 0.00 2.90
203 204 1.474077 GCCCAACGAGAAATGCTGATT 59.526 47.619 0.00 0.00 0.00 2.57
204 205 2.094545 GCCCAACGAGAAATGCTGATTT 60.095 45.455 0.00 0.00 34.29 2.17
205 206 3.762779 CCCAACGAGAAATGCTGATTTC 58.237 45.455 2.10 2.10 45.50 2.17
206 207 3.428045 CCCAACGAGAAATGCTGATTTCC 60.428 47.826 6.02 0.00 46.07 3.13
207 208 3.191162 CCAACGAGAAATGCTGATTTCCA 59.809 43.478 6.02 0.00 46.07 3.53
208 209 4.142315 CCAACGAGAAATGCTGATTTCCAT 60.142 41.667 6.02 0.00 46.07 3.41
209 210 5.066375 CCAACGAGAAATGCTGATTTCCATA 59.934 40.000 6.02 0.00 46.07 2.74
210 211 5.998454 ACGAGAAATGCTGATTTCCATAG 57.002 39.130 6.02 0.17 46.07 2.23
211 212 4.818546 ACGAGAAATGCTGATTTCCATAGG 59.181 41.667 6.02 0.00 46.07 2.57
212 213 4.320057 CGAGAAATGCTGATTTCCATAGGC 60.320 45.833 6.02 0.00 46.07 3.93
213 214 3.893813 AGAAATGCTGATTTCCATAGGCC 59.106 43.478 0.00 0.00 46.07 5.19
214 215 3.607490 AATGCTGATTTCCATAGGCCT 57.393 42.857 11.78 11.78 0.00 5.19
215 216 2.645838 TGCTGATTTCCATAGGCCTC 57.354 50.000 9.68 0.00 0.00 4.70
216 217 1.143684 TGCTGATTTCCATAGGCCTCC 59.856 52.381 9.68 0.00 0.00 4.30
217 218 1.879796 GCTGATTTCCATAGGCCTCCG 60.880 57.143 9.68 0.08 0.00 4.63
218 219 1.417890 CTGATTTCCATAGGCCTCCGT 59.582 52.381 9.68 0.00 0.00 4.69
219 220 1.416401 TGATTTCCATAGGCCTCCGTC 59.584 52.381 9.68 0.00 0.00 4.79
220 221 0.765510 ATTTCCATAGGCCTCCGTCC 59.234 55.000 9.68 0.00 0.00 4.79
221 222 0.326238 TTTCCATAGGCCTCCGTCCT 60.326 55.000 9.68 0.00 37.72 3.85
222 223 0.559205 TTCCATAGGCCTCCGTCCTA 59.441 55.000 9.68 0.00 40.20 2.94
223 224 0.559205 TCCATAGGCCTCCGTCCTAA 59.441 55.000 9.68 0.00 39.43 2.69
224 225 1.062734 TCCATAGGCCTCCGTCCTAAA 60.063 52.381 9.68 0.00 39.43 1.85
225 226 1.766496 CCATAGGCCTCCGTCCTAAAA 59.234 52.381 9.68 0.00 39.43 1.52
226 227 2.372172 CCATAGGCCTCCGTCCTAAAAT 59.628 50.000 9.68 0.00 39.43 1.82
227 228 3.581332 CCATAGGCCTCCGTCCTAAAATA 59.419 47.826 9.68 0.00 39.43 1.40
228 229 4.041198 CCATAGGCCTCCGTCCTAAAATAA 59.959 45.833 9.68 0.00 39.43 1.40
229 230 5.455612 CCATAGGCCTCCGTCCTAAAATAAA 60.456 44.000 9.68 0.00 39.43 1.40
230 231 4.790718 AGGCCTCCGTCCTAAAATAAAT 57.209 40.909 0.00 0.00 30.79 1.40
231 232 4.461198 AGGCCTCCGTCCTAAAATAAATG 58.539 43.478 0.00 0.00 30.79 2.32
232 233 4.165372 AGGCCTCCGTCCTAAAATAAATGA 59.835 41.667 0.00 0.00 30.79 2.57
233 234 4.275196 GGCCTCCGTCCTAAAATAAATGAC 59.725 45.833 0.00 0.00 0.00 3.06
234 235 5.123936 GCCTCCGTCCTAAAATAAATGACT 58.876 41.667 0.00 0.00 0.00 3.41
235 236 5.236695 GCCTCCGTCCTAAAATAAATGACTC 59.763 44.000 0.00 0.00 0.00 3.36
236 237 6.346096 CCTCCGTCCTAAAATAAATGACTCA 58.654 40.000 0.00 0.00 0.00 3.41
237 238 6.821665 CCTCCGTCCTAAAATAAATGACTCAA 59.178 38.462 0.00 0.00 0.00 3.02
238 239 7.201617 CCTCCGTCCTAAAATAAATGACTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
239 240 6.311935 TCCGTCCTAAAATAAATGACTCAACG 59.688 38.462 0.00 0.00 0.00 4.10
240 241 6.091713 CCGTCCTAAAATAAATGACTCAACGT 59.908 38.462 0.00 0.00 0.00 3.99
241 242 7.360607 CCGTCCTAAAATAAATGACTCAACGTT 60.361 37.037 0.00 0.00 0.00 3.99
242 243 7.477422 CGTCCTAAAATAAATGACTCAACGTTG 59.523 37.037 22.35 22.35 0.00 4.10
243 244 7.270579 GTCCTAAAATAAATGACTCAACGTTGC 59.729 37.037 23.47 10.27 0.00 4.17
244 245 7.041030 TCCTAAAATAAATGACTCAACGTTGCA 60.041 33.333 23.47 15.69 0.00 4.08
245 246 6.747659 AAAATAAATGACTCAACGTTGCAC 57.252 33.333 23.47 15.86 0.00 4.57
246 247 5.689383 AATAAATGACTCAACGTTGCACT 57.311 34.783 23.47 7.62 0.00 4.40
247 248 6.795098 AATAAATGACTCAACGTTGCACTA 57.205 33.333 23.47 10.11 0.00 2.74
248 249 6.795098 ATAAATGACTCAACGTTGCACTAA 57.205 33.333 23.47 4.91 0.00 2.24
249 250 4.468095 AATGACTCAACGTTGCACTAAC 57.532 40.909 23.47 11.06 35.90 2.34
250 251 2.206750 TGACTCAACGTTGCACTAACC 58.793 47.619 23.47 8.23 35.84 2.85
251 252 1.191647 GACTCAACGTTGCACTAACCG 59.808 52.381 23.47 6.33 35.84 4.44
252 253 0.511221 CTCAACGTTGCACTAACCGG 59.489 55.000 23.47 0.00 35.84 5.28
253 254 0.881159 TCAACGTTGCACTAACCGGG 60.881 55.000 23.47 0.00 35.84 5.73
254 255 1.598685 AACGTTGCACTAACCGGGG 60.599 57.895 6.32 0.00 35.84 5.73
255 256 2.031465 CGTTGCACTAACCGGGGT 59.969 61.111 6.32 0.00 35.84 4.95
256 257 1.292860 CGTTGCACTAACCGGGGTA 59.707 57.895 6.32 0.00 35.84 3.69
257 258 0.738412 CGTTGCACTAACCGGGGTAG 60.738 60.000 17.60 17.60 35.84 3.18
258 259 0.322648 GTTGCACTAACCGGGGTAGT 59.677 55.000 19.07 19.07 33.01 2.73
259 260 1.550072 GTTGCACTAACCGGGGTAGTA 59.450 52.381 23.77 7.53 33.01 1.82
260 261 1.935799 TGCACTAACCGGGGTAGTAA 58.064 50.000 23.77 12.86 0.00 2.24
261 262 1.826720 TGCACTAACCGGGGTAGTAAG 59.173 52.381 23.77 13.97 0.00 2.34
262 263 1.827344 GCACTAACCGGGGTAGTAAGT 59.173 52.381 23.77 1.45 0.00 2.24
263 264 2.159184 GCACTAACCGGGGTAGTAAGTC 60.159 54.545 23.77 10.14 0.00 3.01
264 265 3.359950 CACTAACCGGGGTAGTAAGTCT 58.640 50.000 23.77 0.00 0.00 3.24
265 266 4.526970 CACTAACCGGGGTAGTAAGTCTA 58.473 47.826 23.77 0.00 0.00 2.59
266 267 4.578105 CACTAACCGGGGTAGTAAGTCTAG 59.422 50.000 23.77 6.76 0.00 2.43
303 305 7.803659 GCTATAGGAAAAGAAGTTGAACACAAC 59.196 37.037 1.04 0.00 42.65 3.32
304 306 5.975693 AGGAAAAGAAGTTGAACACAACA 57.024 34.783 14.03 0.00 44.14 3.33
305 307 6.339587 AGGAAAAGAAGTTGAACACAACAA 57.660 33.333 14.03 0.00 44.14 2.83
320 322 1.198178 CAACAATAACGAACCCCACCG 59.802 52.381 0.00 0.00 0.00 4.94
322 324 0.675522 CAATAACGAACCCCACCGCT 60.676 55.000 0.00 0.00 0.00 5.52
338 340 3.174313 CTGGCCATGGATAGGGGG 58.826 66.667 18.40 0.00 0.00 5.40
340 342 1.464001 TGGCCATGGATAGGGGGAG 60.464 63.158 18.40 0.00 0.00 4.30
346 348 1.132397 CATGGATAGGGGGAGAGGGAA 60.132 57.143 0.00 0.00 0.00 3.97
601 606 2.032680 TTAAATACCAGCCGAGCCAC 57.967 50.000 0.00 0.00 0.00 5.01
673 678 1.095807 GCCCGAGAAAAGAATCCCGG 61.096 60.000 0.00 0.00 36.98 5.73
728 734 4.233635 GCGGCTGCGCATCTTCTG 62.234 66.667 12.24 7.05 34.62 3.02
745 751 3.971245 TCTGCTTCCTCTTCTTCTTCC 57.029 47.619 0.00 0.00 0.00 3.46
770 782 1.084289 GTTTCCCGTGCGCTATTCTT 58.916 50.000 9.73 0.00 0.00 2.52
776 788 2.223044 CCCGTGCGCTATTCTTTTCTTC 60.223 50.000 9.73 0.00 0.00 2.87
778 790 2.223044 CGTGCGCTATTCTTTTCTTCCC 60.223 50.000 9.73 0.00 0.00 3.97
784 796 4.456535 GCTATTCTTTTCTTCCCTCCCTC 58.543 47.826 0.00 0.00 0.00 4.30
789 801 0.550147 TTTCTTCCCTCCCTCCCCAG 60.550 60.000 0.00 0.00 0.00 4.45
884 896 3.110178 CGTTGTTCGTCTCCCCGC 61.110 66.667 0.00 0.00 34.52 6.13
964 976 1.226030 CGCGTATTTCCCCGGAATCC 61.226 60.000 0.73 0.00 33.79 3.01
971 985 0.691078 TTCCCCGGAATCCCTCTCTG 60.691 60.000 0.73 0.00 0.00 3.35
985 999 0.884514 TCTCTGTGACGGAAGAGCAG 59.115 55.000 0.00 0.00 39.86 4.24
986 1000 0.735632 CTCTGTGACGGAAGAGCAGC 60.736 60.000 0.00 0.00 33.98 5.25
987 1001 1.005748 CTGTGACGGAAGAGCAGCA 60.006 57.895 0.00 0.00 0.00 4.41
1204 1218 2.104963 AGCTCCCTCCCATTAACGATTC 59.895 50.000 0.00 0.00 0.00 2.52
1483 1511 1.555538 GATCGATTCTCGCGTGTGC 59.444 57.895 5.77 0.00 40.21 4.57
1496 1524 0.635731 CGTGTGCTTCGATCTCGTTC 59.364 55.000 0.00 0.00 40.80 3.95
1636 1674 2.101082 GGATGTTTCTACCGTCCCTCTC 59.899 54.545 0.00 0.00 0.00 3.20
1641 1679 1.749638 CTACCGTCCCTCTCGCTGT 60.750 63.158 0.00 0.00 0.00 4.40
1767 1805 8.912988 TCCATCCTGGAACAATGATAAATAAAC 58.087 33.333 0.00 0.00 45.00 2.01
1805 1843 8.746052 TTACTGGTGTTATTTCCATAGGATTG 57.254 34.615 0.00 0.00 33.01 2.67
1806 1844 6.731467 ACTGGTGTTATTTCCATAGGATTGT 58.269 36.000 0.00 0.00 33.01 2.71
1808 1846 6.969043 TGGTGTTATTTCCATAGGATTGTCT 58.031 36.000 0.00 0.00 0.00 3.41
1858 1897 7.593875 TTTGTTCATGGCATTTAATACTTGC 57.406 32.000 0.00 0.00 35.64 4.01
1859 1898 6.278172 TGTTCATGGCATTTAATACTTGCA 57.722 33.333 0.00 0.00 38.12 4.08
1907 1946 5.565509 TGTCCCATTAAGCAATTGACTGTA 58.434 37.500 10.34 0.00 30.12 2.74
1930 1969 4.040047 TCTAGAAGAATCTGCCCCATCAA 58.960 43.478 0.00 0.00 37.10 2.57
1931 1970 3.967467 AGAAGAATCTGCCCCATCAAT 57.033 42.857 0.00 0.00 33.59 2.57
2128 2167 8.462016 GTTTTTCACAATATCTCTTGGTATGCT 58.538 33.333 0.00 0.00 0.00 3.79
2162 2201 2.722629 CACAAAATCTGCTCGCTGTTTG 59.277 45.455 8.99 8.99 33.31 2.93
2194 2233 6.815089 AGAATTTGTAGGCAGAGTAGATGAG 58.185 40.000 0.00 0.00 0.00 2.90
2202 2241 5.070001 AGGCAGAGTAGATGAGTAGATGTC 58.930 45.833 0.00 0.00 0.00 3.06
2238 2277 1.002201 TCTCGGACTTCTCTGACGACT 59.998 52.381 0.00 0.00 0.00 4.18
2342 2381 2.098934 GCCGTCATTGCATTTCCACATA 59.901 45.455 0.00 0.00 0.00 2.29
2433 2476 2.038387 TTGGAGCTATCTTTTCCGCC 57.962 50.000 0.00 0.00 33.60 6.13
2475 2518 7.973944 ACTCTACAGGTTTGTTGACAAAATTTC 59.026 33.333 10.58 0.00 46.08 2.17
2480 2523 6.035975 CAGGTTTGTTGACAAAATTTCCTCAC 59.964 38.462 10.58 0.00 46.08 3.51
2489 2532 5.316987 ACAAAATTTCCTCACGATTCTCCT 58.683 37.500 0.00 0.00 0.00 3.69
2490 2533 5.770162 ACAAAATTTCCTCACGATTCTCCTT 59.230 36.000 0.00 0.00 0.00 3.36
2628 2679 2.218603 ACGCCCTTTTTGTACAGTCTG 58.781 47.619 0.00 0.00 0.00 3.51
2791 2842 4.887655 CCTTCCTTGGAGTGTTTGTAAGTT 59.112 41.667 0.00 0.00 0.00 2.66
2792 2843 6.059484 CCTTCCTTGGAGTGTTTGTAAGTTA 58.941 40.000 0.00 0.00 0.00 2.24
2793 2844 6.715264 CCTTCCTTGGAGTGTTTGTAAGTTAT 59.285 38.462 0.00 0.00 0.00 1.89
2794 2845 7.881232 CCTTCCTTGGAGTGTTTGTAAGTTATA 59.119 37.037 0.00 0.00 0.00 0.98
2831 2882 2.887152 ACCTTTGCACTCCTTTGCTTAG 59.113 45.455 0.00 0.00 43.41 2.18
2993 3047 1.999051 CGCGATACTGACTTGGTGC 59.001 57.895 0.00 0.00 0.00 5.01
2998 3052 2.413837 GATACTGACTTGGTGCGTTGT 58.586 47.619 0.00 0.00 0.00 3.32
3146 3200 9.391006 CAGTAGTAGTCTGAATCTAAGAACTCT 57.609 37.037 0.00 0.00 35.20 3.24
3151 3205 4.100344 GTCTGAATCTAAGAACTCTCCCCC 59.900 50.000 0.00 0.00 0.00 5.40
3239 3293 3.501828 TGATGTCACATTACACTTGGCAC 59.498 43.478 0.00 0.00 30.75 5.01
3372 3429 4.460382 CCTTTTCTTCTCTTTAGGCATGCA 59.540 41.667 21.36 0.00 0.00 3.96
3396 3453 1.813513 CAACCTTGTCCTTCATCGCT 58.186 50.000 0.00 0.00 0.00 4.93
3511 3568 5.126061 CACCTCTAAACTGCATTGCCTAATT 59.874 40.000 6.12 0.00 0.00 1.40
3526 3583 6.160576 TGCCTAATTTTCATTTATGGCCTC 57.839 37.500 3.32 0.00 34.10 4.70
3527 3584 5.070313 TGCCTAATTTTCATTTATGGCCTCC 59.930 40.000 3.32 0.00 34.10 4.30
3528 3585 5.511373 GCCTAATTTTCATTTATGGCCTCCC 60.511 44.000 3.32 0.00 31.31 4.30
3530 3587 2.470057 TTTCATTTATGGCCTCCCCC 57.530 50.000 3.32 0.00 0.00 5.40
3609 4009 4.354587 GAATAAGCTCAATTTTGCTCGGG 58.645 43.478 2.84 0.00 38.75 5.14
3716 4116 1.209019 CTGGAGGCAGCAAGTGAGTAT 59.791 52.381 0.00 0.00 0.00 2.12
3762 4162 5.410924 CAGTTGGATCGAGTTAACATCTGA 58.589 41.667 8.61 0.14 33.11 3.27
3874 4274 7.939784 GGTTCTAAACCCTTTCTCACATTAT 57.060 36.000 0.00 0.00 46.12 1.28
3875 4275 7.986562 GGTTCTAAACCCTTTCTCACATTATC 58.013 38.462 0.00 0.00 46.12 1.75
3876 4276 7.829706 GGTTCTAAACCCTTTCTCACATTATCT 59.170 37.037 0.00 0.00 46.12 1.98
3877 4277 8.884726 GTTCTAAACCCTTTCTCACATTATCTC 58.115 37.037 0.00 0.00 0.00 2.75
3878 4278 8.380742 TCTAAACCCTTTCTCACATTATCTCT 57.619 34.615 0.00 0.00 0.00 3.10
3879 4279 9.488762 TCTAAACCCTTTCTCACATTATCTCTA 57.511 33.333 0.00 0.00 0.00 2.43
3882 4282 9.981460 AAACCCTTTCTCACATTATCTCTAATT 57.019 29.630 0.00 0.00 0.00 1.40
3884 4284 8.997734 ACCCTTTCTCACATTATCTCTAATTCT 58.002 33.333 0.00 0.00 0.00 2.40
3885 4285 9.844257 CCCTTTCTCACATTATCTCTAATTCTT 57.156 33.333 0.00 0.00 0.00 2.52
3892 4292 9.408648 TCACATTATCTCTAATTCTTTTTCCCC 57.591 33.333 0.00 0.00 0.00 4.81
3893 4293 8.633561 CACATTATCTCTAATTCTTTTTCCCCC 58.366 37.037 0.00 0.00 0.00 5.40
3894 4294 8.569596 ACATTATCTCTAATTCTTTTTCCCCCT 58.430 33.333 0.00 0.00 0.00 4.79
3895 4295 9.072375 CATTATCTCTAATTCTTTTTCCCCCTC 57.928 37.037 0.00 0.00 0.00 4.30
3896 4296 6.917208 ATCTCTAATTCTTTTTCCCCCTCT 57.083 37.500 0.00 0.00 0.00 3.69
3897 4297 6.720217 TCTCTAATTCTTTTTCCCCCTCTT 57.280 37.500 0.00 0.00 0.00 2.85
3898 4298 6.485171 TCTCTAATTCTTTTTCCCCCTCTTG 58.515 40.000 0.00 0.00 0.00 3.02
3899 4299 6.274672 TCTCTAATTCTTTTTCCCCCTCTTGA 59.725 38.462 0.00 0.00 0.00 3.02
3901 4301 2.971901 TCTTTTTCCCCCTCTTGACC 57.028 50.000 0.00 0.00 0.00 4.02
3902 4302 2.140224 TCTTTTTCCCCCTCTTGACCA 58.860 47.619 0.00 0.00 0.00 4.02
3903 4303 2.158519 TCTTTTTCCCCCTCTTGACCAC 60.159 50.000 0.00 0.00 0.00 4.16
3904 4304 0.109723 TTTTCCCCCTCTTGACCACG 59.890 55.000 0.00 0.00 0.00 4.94
3905 4305 1.774894 TTTCCCCCTCTTGACCACGG 61.775 60.000 0.00 0.00 0.00 4.94
3906 4306 2.606519 CCCCCTCTTGACCACGGA 60.607 66.667 0.00 0.00 0.00 4.69
3908 4308 1.562672 CCCCCTCTTGACCACGGATT 61.563 60.000 0.00 0.00 0.00 3.01
3909 4309 1.200519 CCCCTCTTGACCACGGATTA 58.799 55.000 0.00 0.00 0.00 1.75
3910 4310 1.139058 CCCCTCTTGACCACGGATTAG 59.861 57.143 0.00 0.00 0.00 1.73
3911 4311 2.108168 CCCTCTTGACCACGGATTAGA 58.892 52.381 0.00 0.00 0.00 2.10
3912 4312 2.700897 CCCTCTTGACCACGGATTAGAT 59.299 50.000 0.00 0.00 0.00 1.98
3914 4314 4.262079 CCCTCTTGACCACGGATTAGATAC 60.262 50.000 0.00 0.00 0.00 2.24
3915 4315 4.537965 CTCTTGACCACGGATTAGATACG 58.462 47.826 0.00 0.00 43.82 3.06
3916 4316 3.317149 TCTTGACCACGGATTAGATACGG 59.683 47.826 0.00 0.00 42.09 4.02
3917 4317 1.958579 TGACCACGGATTAGATACGGG 59.041 52.381 0.00 0.00 42.09 5.28
3918 4318 2.233271 GACCACGGATTAGATACGGGA 58.767 52.381 0.00 0.00 44.72 5.14
3919 4319 2.228343 GACCACGGATTAGATACGGGAG 59.772 54.545 0.00 0.00 44.72 4.30
3920 4320 2.158564 ACCACGGATTAGATACGGGAGA 60.159 50.000 0.00 0.00 44.72 3.71
3921 4321 2.228343 CCACGGATTAGATACGGGAGAC 59.772 54.545 0.00 0.00 44.72 3.36
3922 4322 2.228343 CACGGATTAGATACGGGAGACC 59.772 54.545 0.00 0.00 44.72 3.85
3939 4339 6.532365 GGAGACCTTTTTCGCATATTAGAG 57.468 41.667 0.00 0.00 0.00 2.43
3940 4340 5.467063 GGAGACCTTTTTCGCATATTAGAGG 59.533 44.000 0.00 0.00 0.00 3.69
3941 4341 4.816925 AGACCTTTTTCGCATATTAGAGGC 59.183 41.667 0.00 0.00 0.00 4.70
3942 4342 3.883489 ACCTTTTTCGCATATTAGAGGCC 59.117 43.478 0.00 0.00 0.00 5.19
3943 4343 3.882888 CCTTTTTCGCATATTAGAGGCCA 59.117 43.478 5.01 0.00 0.00 5.36
3944 4344 4.520492 CCTTTTTCGCATATTAGAGGCCAT 59.480 41.667 5.01 0.00 0.00 4.40
3945 4345 5.437289 TTTTTCGCATATTAGAGGCCATG 57.563 39.130 5.01 0.00 0.00 3.66
3947 4347 4.350368 TTCGCATATTAGAGGCCATGAA 57.650 40.909 5.01 0.00 0.00 2.57
3948 4348 4.558226 TCGCATATTAGAGGCCATGAAT 57.442 40.909 5.01 3.18 0.00 2.57
3949 4349 5.675684 TCGCATATTAGAGGCCATGAATA 57.324 39.130 5.01 5.59 0.00 1.75
3950 4350 5.664457 TCGCATATTAGAGGCCATGAATAG 58.336 41.667 5.01 1.51 0.00 1.73
3953 4353 7.069950 TCGCATATTAGAGGCCATGAATAGTAT 59.930 37.037 5.01 0.00 0.00 2.12
3959 4359 9.866655 ATTAGAGGCCATGAATAGTATTTGAAA 57.133 29.630 5.01 0.00 0.00 2.69
4111 4521 5.319453 CAATCCCTATCCAATGCAGTGTAT 58.681 41.667 13.82 5.33 0.00 2.29
4122 4532 5.277683 CCAATGCAGTGTATCAGCTTATCAC 60.278 44.000 13.82 0.00 0.00 3.06
4129 4539 2.926778 ATCAGCTTATCACCTGAGGC 57.073 50.000 0.00 0.00 41.00 4.70
4143 4553 0.955428 TGAGGCCATTCTGAACGTGC 60.955 55.000 5.01 0.00 0.00 5.34
4192 4602 6.869695 TCATGTATGTATCGTGTTTACCAGT 58.130 36.000 0.00 0.00 0.00 4.00
4230 4640 0.261991 AGCCTCTGATCCGGTTCCTA 59.738 55.000 10.02 0.00 0.00 2.94
4573 4983 4.202264 ACACTCTGAACTGTAACAGGAAGG 60.202 45.833 12.56 5.69 35.51 3.46
4586 4996 1.699634 CAGGAAGGGAAGGAAGTGTCA 59.300 52.381 0.00 0.00 0.00 3.58
4601 5011 3.462021 AGTGTCACAGCTTCAGAAGAAC 58.538 45.455 14.86 4.16 0.00 3.01
4602 5012 2.219674 GTGTCACAGCTTCAGAAGAACG 59.780 50.000 14.86 3.57 0.00 3.95
4647 5057 1.768684 TTTGGCAGACTCGGAAGGCT 61.769 55.000 0.00 0.00 43.85 4.58
4821 5231 6.071108 CCAATTGTATCCTATGAGATCTCCGT 60.071 42.308 20.03 11.13 0.00 4.69
4859 5269 3.039011 GACCTCCTGCATCTACCCTTAA 58.961 50.000 0.00 0.00 0.00 1.85
4860 5270 2.772515 ACCTCCTGCATCTACCCTTAAC 59.227 50.000 0.00 0.00 0.00 2.01
4888 5299 5.353394 TCTCCTAATGGATTGGTGTGTAC 57.647 43.478 0.00 0.00 42.29 2.90
5005 5432 1.448985 TTTGCCTCCTGTCGTTATGC 58.551 50.000 0.00 0.00 0.00 3.14
5015 5442 1.874231 TGTCGTTATGCTGCCGAAAAA 59.126 42.857 0.00 0.00 31.68 1.94
5018 5445 3.917985 GTCGTTATGCTGCCGAAAAATTT 59.082 39.130 0.00 0.00 31.68 1.82
5019 5446 3.917380 TCGTTATGCTGCCGAAAAATTTG 59.083 39.130 0.00 0.00 0.00 2.32
5021 5448 4.149747 CGTTATGCTGCCGAAAAATTTGTT 59.850 37.500 0.00 0.00 0.00 2.83
5022 5449 5.343593 CGTTATGCTGCCGAAAAATTTGTTA 59.656 36.000 0.00 0.00 0.00 2.41
5023 5450 6.034470 CGTTATGCTGCCGAAAAATTTGTTAT 59.966 34.615 0.00 0.00 0.00 1.89
5024 5451 7.391016 GTTATGCTGCCGAAAAATTTGTTATC 58.609 34.615 0.00 0.00 0.00 1.75
5025 5452 5.132897 TGCTGCCGAAAAATTTGTTATCT 57.867 34.783 0.00 0.00 0.00 1.98
5026 5453 5.160641 TGCTGCCGAAAAATTTGTTATCTC 58.839 37.500 0.00 0.00 0.00 2.75
5027 5454 4.562789 GCTGCCGAAAAATTTGTTATCTCC 59.437 41.667 0.00 0.00 0.00 3.71
5028 5455 4.728534 TGCCGAAAAATTTGTTATCTCCG 58.271 39.130 0.00 0.00 0.00 4.63
5029 5456 4.456222 TGCCGAAAAATTTGTTATCTCCGA 59.544 37.500 0.00 0.00 0.00 4.55
5030 5457 5.028375 GCCGAAAAATTTGTTATCTCCGAG 58.972 41.667 0.00 0.00 0.00 4.63
5031 5458 5.391629 GCCGAAAAATTTGTTATCTCCGAGT 60.392 40.000 0.00 0.00 0.00 4.18
5032 5459 6.608610 CCGAAAAATTTGTTATCTCCGAGTT 58.391 36.000 0.00 0.00 0.00 3.01
5033 5460 6.523201 CCGAAAAATTTGTTATCTCCGAGTTG 59.477 38.462 0.00 0.00 0.00 3.16
5034 5461 6.032460 CGAAAAATTTGTTATCTCCGAGTTGC 59.968 38.462 0.00 0.00 0.00 4.17
5035 5462 5.957842 AAATTTGTTATCTCCGAGTTGCA 57.042 34.783 0.00 0.00 0.00 4.08
5036 5463 5.957842 AATTTGTTATCTCCGAGTTGCAA 57.042 34.783 0.00 0.00 0.00 4.08
5037 5464 6.515272 AATTTGTTATCTCCGAGTTGCAAT 57.485 33.333 0.59 0.00 0.00 3.56
5038 5465 5.957842 TTTGTTATCTCCGAGTTGCAATT 57.042 34.783 0.59 0.00 0.00 2.32
5039 5466 4.944962 TGTTATCTCCGAGTTGCAATTG 57.055 40.909 0.59 0.00 0.00 2.32
5040 5467 3.126858 TGTTATCTCCGAGTTGCAATTGC 59.873 43.478 23.69 23.69 42.50 3.56
5041 5468 1.098050 ATCTCCGAGTTGCAATTGCC 58.902 50.000 26.94 12.98 41.18 4.52
5042 5469 0.036732 TCTCCGAGTTGCAATTGCCT 59.963 50.000 26.94 17.64 41.18 4.75
5043 5470 0.169672 CTCCGAGTTGCAATTGCCTG 59.830 55.000 26.94 11.87 41.18 4.85
5044 5471 0.537143 TCCGAGTTGCAATTGCCTGT 60.537 50.000 26.94 11.38 41.18 4.00
5045 5472 0.314935 CCGAGTTGCAATTGCCTGTT 59.685 50.000 26.94 10.45 41.18 3.16
5059 5486 7.566709 CAATTGCCTGTTTAATCTGTCAAAAC 58.433 34.615 0.00 0.00 34.45 2.43
5090 5517 3.247173 GCTTTTGTGAGGAGCTCGATATG 59.753 47.826 7.83 0.00 32.35 1.78
5110 5537 2.047274 TCCGTGTTAGCCTGCTGC 60.047 61.111 0.97 0.00 41.71 5.25
5137 5564 6.518875 GCAGCATATTTAGGCCCATTTAACAT 60.519 38.462 0.00 0.00 32.62 2.71
5139 5566 7.385752 CAGCATATTTAGGCCCATTTAACATTG 59.614 37.037 0.00 0.00 32.62 2.82
5226 5657 7.829725 ACATTGCAAGATTTATTGTCTGCTTA 58.170 30.769 4.94 0.00 32.56 3.09
5348 5780 2.008329 GCTGTGAGCATTCAGAAGAGG 58.992 52.381 6.29 0.00 41.89 3.69
5388 5820 2.647683 TGGTTACTGGTTGCATGTCA 57.352 45.000 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.497991 CGACATGGTGTCTGTTCGTT 58.502 50.000 8.30 0.00 44.85 3.85
1 2 0.944311 GCGACATGGTGTCTGTTCGT 60.944 55.000 8.30 0.00 44.85 3.85
2 3 1.781555 GCGACATGGTGTCTGTTCG 59.218 57.895 8.30 0.00 44.85 3.95
3 4 1.626654 CCGCGACATGGTGTCTGTTC 61.627 60.000 8.23 0.00 44.85 3.18
4 5 1.667830 CCGCGACATGGTGTCTGTT 60.668 57.895 8.23 0.00 44.85 3.16
5 6 2.048222 CCGCGACATGGTGTCTGT 60.048 61.111 8.23 0.00 44.85 3.41
6 7 2.048222 ACCGCGACATGGTGTCTG 60.048 61.111 8.23 3.77 44.85 3.51
30 31 3.394836 AGCTCGAAGCAGACCCCC 61.395 66.667 9.09 0.00 45.56 5.40
31 32 2.125350 CAGCTCGAAGCAGACCCC 60.125 66.667 9.09 0.00 45.56 4.95
32 33 2.817396 GCAGCTCGAAGCAGACCC 60.817 66.667 9.09 0.00 45.56 4.46
33 34 2.047844 TGCAGCTCGAAGCAGACC 60.048 61.111 9.09 0.00 45.56 3.85
37 38 1.373873 CAGTCTGCAGCTCGAAGCA 60.374 57.895 9.47 7.89 45.56 3.91
38 39 2.738695 GCAGTCTGCAGCTCGAAGC 61.739 63.158 20.16 5.73 44.26 3.86
39 40 3.472533 GCAGTCTGCAGCTCGAAG 58.527 61.111 20.16 0.00 44.26 3.79
48 49 2.359230 GGGACCTGTGCAGTCTGC 60.359 66.667 18.32 18.32 45.29 4.26
49 50 1.302033 GTGGGACCTGTGCAGTCTG 60.302 63.158 4.76 0.00 0.00 3.51
50 51 1.056700 AAGTGGGACCTGTGCAGTCT 61.057 55.000 4.76 0.00 0.00 3.24
51 52 0.179018 AAAGTGGGACCTGTGCAGTC 60.179 55.000 0.00 0.00 0.00 3.51
52 53 0.258774 AAAAGTGGGACCTGTGCAGT 59.741 50.000 0.00 0.00 0.00 4.40
53 54 0.954452 GAAAAGTGGGACCTGTGCAG 59.046 55.000 0.00 0.00 0.00 4.41
54 55 0.550914 AGAAAAGTGGGACCTGTGCA 59.449 50.000 0.00 0.00 0.00 4.57
55 56 1.239347 GAGAAAAGTGGGACCTGTGC 58.761 55.000 0.00 0.00 0.00 4.57
56 57 2.158755 AGTGAGAAAAGTGGGACCTGTG 60.159 50.000 0.00 0.00 0.00 3.66
57 58 2.104963 GAGTGAGAAAAGTGGGACCTGT 59.895 50.000 0.00 0.00 0.00 4.00
58 59 2.772287 GAGTGAGAAAAGTGGGACCTG 58.228 52.381 0.00 0.00 0.00 4.00
59 60 1.344763 CGAGTGAGAAAAGTGGGACCT 59.655 52.381 0.00 0.00 0.00 3.85
60 61 1.343465 TCGAGTGAGAAAAGTGGGACC 59.657 52.381 0.00 0.00 0.00 4.46
61 62 2.405172 GTCGAGTGAGAAAAGTGGGAC 58.595 52.381 0.00 0.00 0.00 4.46
62 63 1.343465 GGTCGAGTGAGAAAAGTGGGA 59.657 52.381 0.00 0.00 0.00 4.37
63 64 1.070134 TGGTCGAGTGAGAAAAGTGGG 59.930 52.381 0.00 0.00 0.00 4.61
64 65 2.526304 TGGTCGAGTGAGAAAAGTGG 57.474 50.000 0.00 0.00 0.00 4.00
65 66 5.207768 CAAAATGGTCGAGTGAGAAAAGTG 58.792 41.667 0.00 0.00 0.00 3.16
66 67 4.261197 GCAAAATGGTCGAGTGAGAAAAGT 60.261 41.667 0.00 0.00 0.00 2.66
67 68 4.222114 GCAAAATGGTCGAGTGAGAAAAG 58.778 43.478 0.00 0.00 0.00 2.27
68 69 3.004315 GGCAAAATGGTCGAGTGAGAAAA 59.996 43.478 0.00 0.00 0.00 2.29
69 70 2.552315 GGCAAAATGGTCGAGTGAGAAA 59.448 45.455 0.00 0.00 0.00 2.52
70 71 2.151202 GGCAAAATGGTCGAGTGAGAA 58.849 47.619 0.00 0.00 0.00 2.87
71 72 1.071542 TGGCAAAATGGTCGAGTGAGA 59.928 47.619 0.00 0.00 0.00 3.27
72 73 1.197721 GTGGCAAAATGGTCGAGTGAG 59.802 52.381 0.00 0.00 0.00 3.51
73 74 1.234821 GTGGCAAAATGGTCGAGTGA 58.765 50.000 0.00 0.00 0.00 3.41
74 75 0.110238 CGTGGCAAAATGGTCGAGTG 60.110 55.000 0.00 0.00 0.00 3.51
75 76 0.250124 TCGTGGCAAAATGGTCGAGT 60.250 50.000 0.00 0.00 0.00 4.18
76 77 0.165944 GTCGTGGCAAAATGGTCGAG 59.834 55.000 0.00 0.00 0.00 4.04
77 78 1.231958 GGTCGTGGCAAAATGGTCGA 61.232 55.000 0.00 0.00 0.00 4.20
78 79 1.209127 GGTCGTGGCAAAATGGTCG 59.791 57.895 0.00 0.00 0.00 4.79
79 80 1.209127 CGGTCGTGGCAAAATGGTC 59.791 57.895 0.00 0.00 0.00 4.02
80 81 1.228003 TCGGTCGTGGCAAAATGGT 60.228 52.632 0.00 0.00 0.00 3.55
81 82 1.209127 GTCGGTCGTGGCAAAATGG 59.791 57.895 0.00 0.00 0.00 3.16
82 83 0.309302 TTGTCGGTCGTGGCAAAATG 59.691 50.000 0.00 0.00 0.00 2.32
83 84 1.068610 CATTGTCGGTCGTGGCAAAAT 60.069 47.619 0.00 0.00 0.00 1.82
84 85 0.309302 CATTGTCGGTCGTGGCAAAA 59.691 50.000 0.00 0.00 0.00 2.44
85 86 0.533085 TCATTGTCGGTCGTGGCAAA 60.533 50.000 0.00 0.00 0.00 3.68
86 87 0.533085 TTCATTGTCGGTCGTGGCAA 60.533 50.000 0.00 0.00 0.00 4.52
87 88 1.069935 TTCATTGTCGGTCGTGGCA 59.930 52.632 0.00 0.00 0.00 4.92
88 89 1.225376 TGTTCATTGTCGGTCGTGGC 61.225 55.000 0.00 0.00 0.00 5.01
89 90 0.790207 CTGTTCATTGTCGGTCGTGG 59.210 55.000 0.00 0.00 0.00 4.94
90 91 0.790207 CCTGTTCATTGTCGGTCGTG 59.210 55.000 0.00 0.00 0.00 4.35
91 92 0.391597 ACCTGTTCATTGTCGGTCGT 59.608 50.000 0.00 0.00 0.00 4.34
92 93 0.790207 CACCTGTTCATTGTCGGTCG 59.210 55.000 0.00 0.00 0.00 4.79
93 94 0.517316 GCACCTGTTCATTGTCGGTC 59.483 55.000 0.00 0.00 0.00 4.79
94 95 0.179032 TGCACCTGTTCATTGTCGGT 60.179 50.000 0.00 0.00 0.00 4.69
95 96 0.238289 GTGCACCTGTTCATTGTCGG 59.762 55.000 5.22 0.00 0.00 4.79
96 97 0.943673 TGTGCACCTGTTCATTGTCG 59.056 50.000 15.69 0.00 0.00 4.35
97 98 1.675483 TGTGTGCACCTGTTCATTGTC 59.325 47.619 15.69 0.00 0.00 3.18
98 99 1.405105 GTGTGTGCACCTGTTCATTGT 59.595 47.619 15.69 0.00 39.61 2.71
99 100 1.404748 TGTGTGTGCACCTGTTCATTG 59.595 47.619 15.69 0.00 44.65 2.82
100 101 1.761449 TGTGTGTGCACCTGTTCATT 58.239 45.000 15.69 0.00 44.65 2.57
101 102 1.761449 TTGTGTGTGCACCTGTTCAT 58.239 45.000 15.69 0.00 44.65 2.57
102 103 1.201181 GTTTGTGTGTGCACCTGTTCA 59.799 47.619 15.69 3.89 44.65 3.18
103 104 1.793714 CGTTTGTGTGTGCACCTGTTC 60.794 52.381 15.69 1.16 44.65 3.18
104 105 0.170116 CGTTTGTGTGTGCACCTGTT 59.830 50.000 15.69 0.00 44.65 3.16
105 106 0.958382 ACGTTTGTGTGTGCACCTGT 60.958 50.000 15.69 0.00 44.65 4.00
106 107 0.170116 AACGTTTGTGTGTGCACCTG 59.830 50.000 15.69 0.00 44.65 4.00
107 108 0.885196 AAACGTTTGTGTGTGCACCT 59.115 45.000 13.81 0.00 44.65 4.00
108 109 1.264672 GAAACGTTTGTGTGTGCACC 58.735 50.000 20.10 6.37 44.65 5.01
109 110 1.135517 AGGAAACGTTTGTGTGTGCAC 60.136 47.619 20.10 10.75 45.44 4.57
110 111 1.169577 AGGAAACGTTTGTGTGTGCA 58.830 45.000 20.10 0.00 0.00 4.57
111 112 2.096174 TGTAGGAAACGTTTGTGTGTGC 59.904 45.455 20.10 1.37 0.00 4.57
112 113 4.278858 CATGTAGGAAACGTTTGTGTGTG 58.721 43.478 20.10 6.41 0.00 3.82
113 114 3.314080 CCATGTAGGAAACGTTTGTGTGT 59.686 43.478 20.10 0.00 41.22 3.72
114 115 3.304391 CCCATGTAGGAAACGTTTGTGTG 60.304 47.826 20.10 8.12 41.22 3.82
115 116 2.882137 CCCATGTAGGAAACGTTTGTGT 59.118 45.455 20.10 4.95 41.22 3.72
116 117 2.882137 ACCCATGTAGGAAACGTTTGTG 59.118 45.455 20.10 7.12 41.22 3.33
117 118 2.882137 CACCCATGTAGGAAACGTTTGT 59.118 45.455 20.10 8.00 41.22 2.83
118 119 2.882137 ACACCCATGTAGGAAACGTTTG 59.118 45.455 20.10 2.24 41.22 2.93
119 120 3.217681 ACACCCATGTAGGAAACGTTT 57.782 42.857 14.57 14.57 41.22 3.60
120 121 2.943036 ACACCCATGTAGGAAACGTT 57.057 45.000 0.00 0.00 41.22 3.99
121 122 2.943036 AACACCCATGTAGGAAACGT 57.057 45.000 0.00 0.00 38.45 3.99
122 123 4.036971 TCAAAAACACCCATGTAGGAAACG 59.963 41.667 0.00 0.00 38.45 3.60
123 124 5.523438 TCAAAAACACCCATGTAGGAAAC 57.477 39.130 0.00 0.00 38.45 2.78
124 125 6.546428 TTTCAAAAACACCCATGTAGGAAA 57.454 33.333 0.00 0.00 38.45 3.13
125 126 6.342111 GTTTTCAAAAACACCCATGTAGGAA 58.658 36.000 12.31 0.00 45.72 3.36
126 127 5.450688 CGTTTTCAAAAACACCCATGTAGGA 60.451 40.000 16.22 0.00 46.52 2.94
127 128 4.742659 CGTTTTCAAAAACACCCATGTAGG 59.257 41.667 16.22 0.00 46.52 3.18
128 129 4.208253 GCGTTTTCAAAAACACCCATGTAG 59.792 41.667 16.22 1.12 46.52 2.74
129 130 4.113354 GCGTTTTCAAAAACACCCATGTA 58.887 39.130 16.22 0.00 46.52 2.29
130 131 2.933260 GCGTTTTCAAAAACACCCATGT 59.067 40.909 16.22 0.00 46.52 3.21
131 132 2.932614 TGCGTTTTCAAAAACACCCATG 59.067 40.909 16.22 2.85 46.52 3.66
132 133 3.194062 CTGCGTTTTCAAAAACACCCAT 58.806 40.909 16.22 0.00 46.52 4.00
133 134 2.611518 CTGCGTTTTCAAAAACACCCA 58.388 42.857 16.22 9.78 46.52 4.51
134 135 1.326245 GCTGCGTTTTCAAAAACACCC 59.674 47.619 16.22 6.48 46.52 4.61
135 136 1.996191 TGCTGCGTTTTCAAAAACACC 59.004 42.857 16.22 8.44 46.52 4.16
136 137 3.403670 GTTGCTGCGTTTTCAAAAACAC 58.596 40.909 16.22 8.76 46.52 3.32
137 138 2.091277 CGTTGCTGCGTTTTCAAAAACA 59.909 40.909 16.22 4.78 46.52 2.83
138 139 2.091432 ACGTTGCTGCGTTTTCAAAAAC 59.909 40.909 8.05 8.05 43.04 2.43
139 140 2.329379 ACGTTGCTGCGTTTTCAAAAA 58.671 38.095 0.00 0.00 43.04 1.94
140 141 1.983972 ACGTTGCTGCGTTTTCAAAA 58.016 40.000 0.00 0.00 43.04 2.44
141 142 3.704381 ACGTTGCTGCGTTTTCAAA 57.296 42.105 0.00 0.00 43.04 2.69
149 150 3.181826 TGAAGAATAAACGTTGCTGCG 57.818 42.857 0.00 0.00 37.94 5.18
150 151 4.475944 ACATGAAGAATAAACGTTGCTGC 58.524 39.130 0.00 0.00 0.00 5.25
151 152 8.577939 CAATAACATGAAGAATAAACGTTGCTG 58.422 33.333 0.00 0.00 0.00 4.41
152 153 8.511321 TCAATAACATGAAGAATAAACGTTGCT 58.489 29.630 0.00 0.00 0.00 3.91
153 154 8.575454 GTCAATAACATGAAGAATAAACGTTGC 58.425 33.333 0.00 0.00 0.00 4.17
154 155 9.605955 TGTCAATAACATGAAGAATAAACGTTG 57.394 29.630 0.00 0.00 31.20 4.10
155 156 9.607285 GTGTCAATAACATGAAGAATAAACGTT 57.393 29.630 0.00 0.00 40.80 3.99
156 157 7.955324 CGTGTCAATAACATGAAGAATAAACGT 59.045 33.333 0.00 0.00 46.13 3.99
157 158 7.425309 CCGTGTCAATAACATGAAGAATAAACG 59.575 37.037 0.00 1.30 46.13 3.60
158 159 7.218204 GCCGTGTCAATAACATGAAGAATAAAC 59.782 37.037 0.00 0.00 46.13 2.01
159 160 7.247728 GCCGTGTCAATAACATGAAGAATAAA 58.752 34.615 0.00 0.00 46.13 1.40
160 161 6.183360 GGCCGTGTCAATAACATGAAGAATAA 60.183 38.462 0.00 0.00 46.13 1.40
161 162 5.295787 GGCCGTGTCAATAACATGAAGAATA 59.704 40.000 0.00 0.00 46.13 1.75
162 163 4.096382 GGCCGTGTCAATAACATGAAGAAT 59.904 41.667 0.00 0.00 46.13 2.40
163 164 3.438781 GGCCGTGTCAATAACATGAAGAA 59.561 43.478 0.00 0.00 46.13 2.52
164 165 3.006940 GGCCGTGTCAATAACATGAAGA 58.993 45.455 0.00 0.00 46.13 2.87
165 166 2.097466 GGGCCGTGTCAATAACATGAAG 59.903 50.000 0.00 0.00 46.13 3.02
166 167 2.088423 GGGCCGTGTCAATAACATGAA 58.912 47.619 0.00 0.00 46.13 2.57
167 168 1.003696 TGGGCCGTGTCAATAACATGA 59.996 47.619 0.00 0.00 46.13 3.07
168 169 1.458398 TGGGCCGTGTCAATAACATG 58.542 50.000 0.00 0.00 43.39 3.21
169 170 1.816224 GTTGGGCCGTGTCAATAACAT 59.184 47.619 0.00 0.00 40.80 2.71
170 171 1.240256 GTTGGGCCGTGTCAATAACA 58.760 50.000 0.00 0.00 34.78 2.41
171 172 0.167251 CGTTGGGCCGTGTCAATAAC 59.833 55.000 0.00 0.00 0.00 1.89
172 173 0.035036 TCGTTGGGCCGTGTCAATAA 59.965 50.000 0.00 0.00 0.00 1.40
173 174 0.390603 CTCGTTGGGCCGTGTCAATA 60.391 55.000 0.00 0.00 0.00 1.90
174 175 1.671054 CTCGTTGGGCCGTGTCAAT 60.671 57.895 0.00 0.00 0.00 2.57
175 176 2.280524 CTCGTTGGGCCGTGTCAA 60.281 61.111 0.00 0.00 0.00 3.18
176 177 2.313051 TTTCTCGTTGGGCCGTGTCA 62.313 55.000 0.00 0.00 0.00 3.58
177 178 0.953960 ATTTCTCGTTGGGCCGTGTC 60.954 55.000 0.00 0.00 0.00 3.67
178 179 1.072505 ATTTCTCGTTGGGCCGTGT 59.927 52.632 0.00 0.00 0.00 4.49
179 180 1.501741 CATTTCTCGTTGGGCCGTG 59.498 57.895 0.00 0.00 0.00 4.94
180 181 2.332654 GCATTTCTCGTTGGGCCGT 61.333 57.895 0.00 0.00 0.00 5.68
181 182 2.040544 AGCATTTCTCGTTGGGCCG 61.041 57.895 0.00 0.00 0.00 6.13
182 183 0.960364 TCAGCATTTCTCGTTGGGCC 60.960 55.000 0.00 0.00 0.00 5.80
183 184 1.098050 ATCAGCATTTCTCGTTGGGC 58.902 50.000 0.00 0.00 0.00 5.36
184 185 3.428045 GGAAATCAGCATTTCTCGTTGGG 60.428 47.826 8.82 0.00 45.18 4.12
185 186 3.191162 TGGAAATCAGCATTTCTCGTTGG 59.809 43.478 8.82 0.00 45.18 3.77
186 187 4.424061 TGGAAATCAGCATTTCTCGTTG 57.576 40.909 8.82 0.00 45.18 4.10
187 188 5.297776 CCTATGGAAATCAGCATTTCTCGTT 59.702 40.000 8.82 0.00 45.18 3.85
188 189 4.818546 CCTATGGAAATCAGCATTTCTCGT 59.181 41.667 8.82 4.62 45.18 4.18
189 190 4.320057 GCCTATGGAAATCAGCATTTCTCG 60.320 45.833 8.82 0.00 45.18 4.04
190 191 4.022503 GGCCTATGGAAATCAGCATTTCTC 60.023 45.833 0.00 2.00 45.18 2.87
191 192 3.893813 GGCCTATGGAAATCAGCATTTCT 59.106 43.478 0.00 0.00 45.18 2.52
192 193 3.893813 AGGCCTATGGAAATCAGCATTTC 59.106 43.478 1.29 1.75 45.14 2.17
193 194 3.893813 GAGGCCTATGGAAATCAGCATTT 59.106 43.478 4.42 0.00 34.70 2.32
194 195 3.494332 GAGGCCTATGGAAATCAGCATT 58.506 45.455 4.42 0.00 0.00 3.56
195 196 2.224967 GGAGGCCTATGGAAATCAGCAT 60.225 50.000 4.42 0.00 0.00 3.79
196 197 1.143684 GGAGGCCTATGGAAATCAGCA 59.856 52.381 4.42 0.00 0.00 4.41
197 198 1.879796 CGGAGGCCTATGGAAATCAGC 60.880 57.143 4.42 0.00 0.00 4.26
198 199 1.417890 ACGGAGGCCTATGGAAATCAG 59.582 52.381 4.42 0.00 0.00 2.90
199 200 1.416401 GACGGAGGCCTATGGAAATCA 59.584 52.381 4.42 0.00 0.00 2.57
200 201 1.270893 GGACGGAGGCCTATGGAAATC 60.271 57.143 4.42 0.00 0.00 2.17
201 202 0.765510 GGACGGAGGCCTATGGAAAT 59.234 55.000 4.42 0.00 0.00 2.17
202 203 0.326238 AGGACGGAGGCCTATGGAAA 60.326 55.000 4.42 0.00 32.92 3.13
203 204 0.559205 TAGGACGGAGGCCTATGGAA 59.441 55.000 4.42 0.00 36.96 3.53
204 205 0.559205 TTAGGACGGAGGCCTATGGA 59.441 55.000 4.42 0.00 37.81 3.41
205 206 1.420430 TTTAGGACGGAGGCCTATGG 58.580 55.000 4.42 0.00 37.81 2.74
206 207 3.771577 ATTTTAGGACGGAGGCCTATG 57.228 47.619 4.42 3.04 37.81 2.23
207 208 5.899631 TTTATTTTAGGACGGAGGCCTAT 57.100 39.130 4.42 0.00 37.81 2.57
208 209 5.367352 TCATTTATTTTAGGACGGAGGCCTA 59.633 40.000 4.42 0.00 36.96 3.93
209 210 4.165372 TCATTTATTTTAGGACGGAGGCCT 59.835 41.667 3.86 3.86 39.56 5.19
210 211 4.275196 GTCATTTATTTTAGGACGGAGGCC 59.725 45.833 0.00 0.00 0.00 5.19
211 212 5.123936 AGTCATTTATTTTAGGACGGAGGC 58.876 41.667 0.00 0.00 33.84 4.70
212 213 6.346096 TGAGTCATTTATTTTAGGACGGAGG 58.654 40.000 0.00 0.00 33.84 4.30
213 214 7.464178 CGTTGAGTCATTTATTTTAGGACGGAG 60.464 40.741 0.00 0.00 33.84 4.63
214 215 6.311935 CGTTGAGTCATTTATTTTAGGACGGA 59.688 38.462 0.00 0.00 33.84 4.69
215 216 6.091713 ACGTTGAGTCATTTATTTTAGGACGG 59.908 38.462 9.55 0.00 33.84 4.79
216 217 7.057149 ACGTTGAGTCATTTATTTTAGGACG 57.943 36.000 0.00 0.00 33.84 4.79
217 218 7.270579 GCAACGTTGAGTCATTTATTTTAGGAC 59.729 37.037 31.62 3.06 0.00 3.85
218 219 7.041030 TGCAACGTTGAGTCATTTATTTTAGGA 60.041 33.333 31.62 0.00 0.00 2.94
219 220 7.060633 GTGCAACGTTGAGTCATTTATTTTAGG 59.939 37.037 31.62 0.00 0.00 2.69
220 221 7.803189 AGTGCAACGTTGAGTCATTTATTTTAG 59.197 33.333 31.62 0.00 45.86 1.85
221 222 7.644490 AGTGCAACGTTGAGTCATTTATTTTA 58.356 30.769 31.62 0.00 45.86 1.52
222 223 6.503524 AGTGCAACGTTGAGTCATTTATTTT 58.496 32.000 31.62 0.26 45.86 1.82
223 224 6.072112 AGTGCAACGTTGAGTCATTTATTT 57.928 33.333 31.62 0.92 45.86 1.40
224 225 5.689383 AGTGCAACGTTGAGTCATTTATT 57.311 34.783 31.62 1.77 45.86 1.40
225 226 6.348213 GGTTAGTGCAACGTTGAGTCATTTAT 60.348 38.462 31.62 10.04 45.86 1.40
226 227 5.049954 GGTTAGTGCAACGTTGAGTCATTTA 60.050 40.000 31.62 13.08 45.86 1.40
227 228 4.261031 GGTTAGTGCAACGTTGAGTCATTT 60.261 41.667 31.62 13.94 45.86 2.32
228 229 3.250040 GGTTAGTGCAACGTTGAGTCATT 59.750 43.478 31.62 17.89 45.86 2.57
229 230 2.806244 GGTTAGTGCAACGTTGAGTCAT 59.194 45.455 31.62 13.67 45.86 3.06
230 231 2.206750 GGTTAGTGCAACGTTGAGTCA 58.793 47.619 31.62 16.97 45.86 3.41
231 232 1.191647 CGGTTAGTGCAACGTTGAGTC 59.808 52.381 31.62 18.68 45.86 3.36
232 233 1.214367 CGGTTAGTGCAACGTTGAGT 58.786 50.000 31.62 19.65 45.86 3.41
233 234 0.511221 CCGGTTAGTGCAACGTTGAG 59.489 55.000 31.62 6.89 45.86 3.02
234 235 0.881159 CCCGGTTAGTGCAACGTTGA 60.881 55.000 31.62 13.82 45.86 3.18
235 236 1.572447 CCCGGTTAGTGCAACGTTG 59.428 57.895 23.90 23.90 45.86 4.10
236 237 1.598685 CCCCGGTTAGTGCAACGTT 60.599 57.895 0.00 0.00 45.86 3.99
237 238 1.470996 TACCCCGGTTAGTGCAACGT 61.471 55.000 0.00 0.00 45.86 3.99
238 239 0.738412 CTACCCCGGTTAGTGCAACG 60.738 60.000 0.00 0.00 45.86 4.10
239 240 0.322648 ACTACCCCGGTTAGTGCAAC 59.677 55.000 11.30 0.00 36.32 4.17
240 241 1.935799 TACTACCCCGGTTAGTGCAA 58.064 50.000 18.86 1.53 0.00 4.08
241 242 1.826720 CTTACTACCCCGGTTAGTGCA 59.173 52.381 18.86 8.04 0.00 4.57
242 243 1.827344 ACTTACTACCCCGGTTAGTGC 59.173 52.381 18.86 0.00 0.00 4.40
243 244 3.359950 AGACTTACTACCCCGGTTAGTG 58.640 50.000 18.86 8.90 28.67 2.74
244 245 3.746792 AGACTTACTACCCCGGTTAGT 57.253 47.619 15.36 15.36 30.73 2.24
245 246 4.140536 CCTAGACTTACTACCCCGGTTAG 58.859 52.174 0.00 2.99 0.00 2.34
246 247 3.527665 ACCTAGACTTACTACCCCGGTTA 59.472 47.826 0.00 0.00 0.00 2.85
247 248 2.313041 ACCTAGACTTACTACCCCGGTT 59.687 50.000 0.00 0.00 0.00 4.44
248 249 1.925959 ACCTAGACTTACTACCCCGGT 59.074 52.381 0.00 0.00 0.00 5.28
249 250 2.174424 AGACCTAGACTTACTACCCCGG 59.826 54.545 0.00 0.00 0.00 5.73
250 251 3.574354 AGACCTAGACTTACTACCCCG 57.426 52.381 0.00 0.00 0.00 5.73
251 252 6.206438 CGAAATAGACCTAGACTTACTACCCC 59.794 46.154 0.00 0.00 0.00 4.95
252 253 6.206438 CCGAAATAGACCTAGACTTACTACCC 59.794 46.154 0.00 0.00 0.00 3.69
253 254 6.293900 GCCGAAATAGACCTAGACTTACTACC 60.294 46.154 0.00 0.00 0.00 3.18
254 255 6.486320 AGCCGAAATAGACCTAGACTTACTAC 59.514 42.308 0.00 0.00 0.00 2.73
255 256 6.599445 AGCCGAAATAGACCTAGACTTACTA 58.401 40.000 0.00 0.00 0.00 1.82
256 257 5.447757 AGCCGAAATAGACCTAGACTTACT 58.552 41.667 0.00 0.00 0.00 2.24
257 258 5.771153 AGCCGAAATAGACCTAGACTTAC 57.229 43.478 0.00 0.00 0.00 2.34
258 259 7.828223 CCTATAGCCGAAATAGACCTAGACTTA 59.172 40.741 0.00 0.00 0.00 2.24
259 260 6.660094 CCTATAGCCGAAATAGACCTAGACTT 59.340 42.308 0.00 0.00 0.00 3.01
260 261 6.012683 TCCTATAGCCGAAATAGACCTAGACT 60.013 42.308 0.00 0.00 0.00 3.24
261 262 6.179040 TCCTATAGCCGAAATAGACCTAGAC 58.821 44.000 0.00 0.00 0.00 2.59
262 263 6.384342 TCCTATAGCCGAAATAGACCTAGA 57.616 41.667 0.00 0.00 0.00 2.43
263 264 7.463961 TTTCCTATAGCCGAAATAGACCTAG 57.536 40.000 0.00 0.00 0.00 3.02
264 265 7.727186 TCTTTTCCTATAGCCGAAATAGACCTA 59.273 37.037 5.37 0.00 0.00 3.08
265 266 6.553852 TCTTTTCCTATAGCCGAAATAGACCT 59.446 38.462 5.37 0.00 0.00 3.85
266 267 6.756221 TCTTTTCCTATAGCCGAAATAGACC 58.244 40.000 5.37 0.00 0.00 3.85
303 305 0.675522 AGCGGTGGGGTTCGTTATTG 60.676 55.000 0.00 0.00 0.00 1.90
304 306 0.675522 CAGCGGTGGGGTTCGTTATT 60.676 55.000 6.74 0.00 0.00 1.40
305 307 1.078708 CAGCGGTGGGGTTCGTTAT 60.079 57.895 6.74 0.00 0.00 1.89
320 322 2.437897 CCCCTATCCATGGCCAGC 59.562 66.667 13.05 0.00 0.00 4.85
322 324 1.464001 CTCCCCCTATCCATGGCCA 60.464 63.158 8.56 8.56 0.00 5.36
357 359 2.347490 CAGGGTGGTCAGTTCCGG 59.653 66.667 0.00 0.00 0.00 5.14
552 557 1.074850 GAGGGAGGAAGGAGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
596 601 0.675522 CCGTCGTAATTTGGGTGGCT 60.676 55.000 0.00 0.00 0.00 4.75
601 606 2.103537 AGGTTCCGTCGTAATTTGGG 57.896 50.000 0.00 0.00 0.00 4.12
643 648 3.752339 CTCGGGCTGGCTTTTGGC 61.752 66.667 0.00 0.00 46.23 4.52
728 734 1.065053 GGGGGAAGAAGAAGAGGAAGC 60.065 57.143 0.00 0.00 0.00 3.86
729 735 1.208293 CGGGGGAAGAAGAAGAGGAAG 59.792 57.143 0.00 0.00 0.00 3.46
730 736 1.203262 TCGGGGGAAGAAGAAGAGGAA 60.203 52.381 0.00 0.00 0.00 3.36
733 739 1.562783 ACTCGGGGGAAGAAGAAGAG 58.437 55.000 0.00 0.00 0.00 2.85
770 782 0.550147 CTGGGGAGGGAGGGAAGAAA 60.550 60.000 0.00 0.00 0.00 2.52
854 866 1.801178 GAACAACGAAGCTCCTCCTTG 59.199 52.381 0.00 0.00 0.00 3.61
964 976 0.172352 GCTCTTCCGTCACAGAGAGG 59.828 60.000 0.24 0.00 39.21 3.69
971 985 1.739562 CCTGCTGCTCTTCCGTCAC 60.740 63.158 0.00 0.00 0.00 3.67
1204 1218 4.614535 CGAGCAGAAAGAAATTGGAAGGTG 60.615 45.833 0.00 0.00 0.00 4.00
1483 1511 1.534175 CGGGAAGGAACGAGATCGAAG 60.534 57.143 9.58 0.00 43.02 3.79
1524 1552 1.134220 GGCCATTTCTGATACGGTGGA 60.134 52.381 0.00 0.00 0.00 4.02
1636 1674 2.335752 GCAGATCCAGATATGACAGCG 58.664 52.381 6.46 0.00 32.07 5.18
1818 1856 2.344592 ACAAATGGGTGGTCCTACTCA 58.655 47.619 0.00 0.00 35.12 3.41
1858 1897 2.315925 CTGGCACCCAGTAGTACATG 57.684 55.000 2.52 0.00 45.82 3.21
1907 1946 4.237843 TGATGGGGCAGATTCTTCTAGAT 58.762 43.478 0.00 0.00 0.00 1.98
2128 2167 5.415701 GCAGATTTTGTGGAGGATGAAAGTA 59.584 40.000 0.00 0.00 0.00 2.24
2177 2216 6.001460 ACATCTACTCATCTACTCTGCCTAC 58.999 44.000 0.00 0.00 0.00 3.18
2194 2233 1.471676 CCCCGCAGAACAGACATCTAC 60.472 57.143 0.00 0.00 0.00 2.59
2202 2241 1.802880 CGAGATAACCCCGCAGAACAG 60.803 57.143 0.00 0.00 0.00 3.16
2238 2277 3.611113 GCAGCTGAAACGTAGTAATCGAA 59.389 43.478 20.43 0.00 45.00 3.71
2362 2401 3.808728 TGAGGTTCACATGCTAATAGCC 58.191 45.455 10.06 0.00 41.51 3.93
2628 2679 1.149854 AACACCTTCCCCGAACACC 59.850 57.895 0.00 0.00 0.00 4.16
2791 2842 8.150945 GCAAAGGTGAGACTCCAGAATAATATA 58.849 37.037 0.00 0.00 0.00 0.86
2792 2843 6.995091 GCAAAGGTGAGACTCCAGAATAATAT 59.005 38.462 0.00 0.00 0.00 1.28
2793 2844 6.070251 TGCAAAGGTGAGACTCCAGAATAATA 60.070 38.462 0.00 0.00 0.00 0.98
2794 2845 5.189180 GCAAAGGTGAGACTCCAGAATAAT 58.811 41.667 0.00 0.00 0.00 1.28
2831 2882 0.582005 GTGGCCGACGATCATTTAGC 59.418 55.000 0.00 0.00 0.00 3.09
2984 3038 1.400494 AGTTGAACAACGCACCAAGTC 59.600 47.619 11.21 0.00 45.50 3.01
2993 3047 4.854399 TGCCTGAAATAAGTTGAACAACG 58.146 39.130 11.21 0.00 45.50 4.10
2998 3052 7.882791 TCAGTAGAATGCCTGAAATAAGTTGAA 59.117 33.333 0.00 0.00 34.88 2.69
3146 3200 3.684413 GCAAAGATCAGATAAACGGGGGA 60.684 47.826 0.00 0.00 0.00 4.81
3151 3205 4.585364 CAGCTGCAAAGATCAGATAAACG 58.415 43.478 0.00 0.00 33.54 3.60
3233 3287 0.176910 TCTCTGTCACGTTGTGCCAA 59.823 50.000 0.00 0.00 32.98 4.52
3239 3293 2.057316 CTTGAGCTCTCTGTCACGTTG 58.943 52.381 16.19 0.00 0.00 4.10
3372 3429 3.057315 CGATGAAGGACAAGGTTGCAAAT 60.057 43.478 0.00 0.00 0.00 2.32
3511 3568 2.470057 GGGGGAGGCCATAAATGAAA 57.530 50.000 5.01 0.00 0.00 2.69
3546 3603 4.642429 TGCAAGAAGAAAGACTTAGGACC 58.358 43.478 0.00 0.00 39.13 4.46
3609 4009 1.609072 GCTCTTCCAACCAGAACCAAC 59.391 52.381 0.00 0.00 0.00 3.77
3716 4116 5.709631 TGCCAGATAGTCTAATGCAACAAAA 59.290 36.000 0.00 0.00 0.00 2.44
3867 4267 8.633561 GGGGGAAAAAGAATTAGAGATAATGTG 58.366 37.037 0.00 0.00 0.00 3.21
3871 4271 8.407313 AGAGGGGGAAAAAGAATTAGAGATAA 57.593 34.615 0.00 0.00 0.00 1.75
3874 4274 6.274672 TCAAGAGGGGGAAAAAGAATTAGAGA 59.725 38.462 0.00 0.00 0.00 3.10
3875 4275 6.375736 GTCAAGAGGGGGAAAAAGAATTAGAG 59.624 42.308 0.00 0.00 0.00 2.43
3876 4276 6.246163 GTCAAGAGGGGGAAAAAGAATTAGA 58.754 40.000 0.00 0.00 0.00 2.10
3877 4277 5.419155 GGTCAAGAGGGGGAAAAAGAATTAG 59.581 44.000 0.00 0.00 0.00 1.73
3878 4278 5.162925 TGGTCAAGAGGGGGAAAAAGAATTA 60.163 40.000 0.00 0.00 0.00 1.40
3879 4279 4.160329 GGTCAAGAGGGGGAAAAAGAATT 58.840 43.478 0.00 0.00 0.00 2.17
3882 4282 2.140224 TGGTCAAGAGGGGGAAAAAGA 58.860 47.619 0.00 0.00 0.00 2.52
3884 4284 1.477923 CGTGGTCAAGAGGGGGAAAAA 60.478 52.381 0.00 0.00 0.00 1.94
3885 4285 0.109723 CGTGGTCAAGAGGGGGAAAA 59.890 55.000 0.00 0.00 0.00 2.29
3886 4286 1.758592 CGTGGTCAAGAGGGGGAAA 59.241 57.895 0.00 0.00 0.00 3.13
3887 4287 2.221299 CCGTGGTCAAGAGGGGGAA 61.221 63.158 0.00 0.00 0.00 3.97
3888 4288 2.471084 ATCCGTGGTCAAGAGGGGGA 62.471 60.000 0.00 0.00 0.00 4.81
3889 4289 1.562672 AATCCGTGGTCAAGAGGGGG 61.563 60.000 0.00 0.00 0.00 5.40
3891 4291 2.108168 TCTAATCCGTGGTCAAGAGGG 58.892 52.381 0.00 0.00 0.00 4.30
3892 4292 4.556898 CGTATCTAATCCGTGGTCAAGAGG 60.557 50.000 0.00 0.00 0.00 3.69
3893 4293 4.537965 CGTATCTAATCCGTGGTCAAGAG 58.462 47.826 0.00 0.00 0.00 2.85
3894 4294 3.317149 CCGTATCTAATCCGTGGTCAAGA 59.683 47.826 0.00 0.00 0.00 3.02
3895 4295 3.552273 CCCGTATCTAATCCGTGGTCAAG 60.552 52.174 0.00 0.00 0.00 3.02
3896 4296 2.363038 CCCGTATCTAATCCGTGGTCAA 59.637 50.000 0.00 0.00 0.00 3.18
3897 4297 1.958579 CCCGTATCTAATCCGTGGTCA 59.041 52.381 0.00 0.00 0.00 4.02
3898 4298 2.228343 CTCCCGTATCTAATCCGTGGTC 59.772 54.545 0.00 0.00 0.00 4.02
3899 4299 2.158564 TCTCCCGTATCTAATCCGTGGT 60.159 50.000 0.00 0.00 0.00 4.16
3901 4301 2.228343 GGTCTCCCGTATCTAATCCGTG 59.772 54.545 0.00 0.00 0.00 4.94
3902 4302 2.107901 AGGTCTCCCGTATCTAATCCGT 59.892 50.000 0.00 0.00 35.12 4.69
3903 4303 2.792878 AGGTCTCCCGTATCTAATCCG 58.207 52.381 0.00 0.00 35.12 4.18
3904 4304 5.548181 AAAAGGTCTCCCGTATCTAATCC 57.452 43.478 0.00 0.00 35.12 3.01
3905 4305 5.690857 CGAAAAAGGTCTCCCGTATCTAATC 59.309 44.000 0.00 0.00 35.12 1.75
3906 4306 5.598769 CGAAAAAGGTCTCCCGTATCTAAT 58.401 41.667 0.00 0.00 35.12 1.73
3908 4308 3.181483 GCGAAAAAGGTCTCCCGTATCTA 60.181 47.826 0.00 0.00 35.12 1.98
3909 4309 2.418334 GCGAAAAAGGTCTCCCGTATCT 60.418 50.000 0.00 0.00 35.12 1.98
3910 4310 1.931841 GCGAAAAAGGTCTCCCGTATC 59.068 52.381 0.00 0.00 35.12 2.24
3911 4311 1.276989 TGCGAAAAAGGTCTCCCGTAT 59.723 47.619 0.00 0.00 35.12 3.06
3912 4312 0.680618 TGCGAAAAAGGTCTCCCGTA 59.319 50.000 0.00 0.00 35.12 4.02
3914 4314 2.018542 TATGCGAAAAAGGTCTCCCG 57.981 50.000 0.00 0.00 35.12 5.14
3915 4315 5.365619 TCTAATATGCGAAAAAGGTCTCCC 58.634 41.667 0.00 0.00 0.00 4.30
3916 4316 5.467063 CCTCTAATATGCGAAAAAGGTCTCC 59.533 44.000 0.00 0.00 0.00 3.71
3917 4317 5.050023 GCCTCTAATATGCGAAAAAGGTCTC 60.050 44.000 0.00 0.00 0.00 3.36
3918 4318 4.816925 GCCTCTAATATGCGAAAAAGGTCT 59.183 41.667 0.00 0.00 0.00 3.85
3919 4319 4.023963 GGCCTCTAATATGCGAAAAAGGTC 60.024 45.833 0.00 0.00 0.00 3.85
3920 4320 3.883489 GGCCTCTAATATGCGAAAAAGGT 59.117 43.478 0.00 0.00 0.00 3.50
3921 4321 3.882888 TGGCCTCTAATATGCGAAAAAGG 59.117 43.478 3.32 0.00 0.00 3.11
3922 4322 5.239306 TCATGGCCTCTAATATGCGAAAAAG 59.761 40.000 3.32 0.00 0.00 2.27
3923 4323 5.129634 TCATGGCCTCTAATATGCGAAAAA 58.870 37.500 3.32 0.00 0.00 1.94
3924 4324 4.713553 TCATGGCCTCTAATATGCGAAAA 58.286 39.130 3.32 0.00 0.00 2.29
3925 4325 4.350368 TCATGGCCTCTAATATGCGAAA 57.650 40.909 3.32 0.00 0.00 3.46
3937 4337 7.573968 AGTTTCAAATACTATTCATGGCCTC 57.426 36.000 3.32 0.00 0.00 4.70
3938 4338 7.961326 AAGTTTCAAATACTATTCATGGCCT 57.039 32.000 3.32 0.00 0.00 5.19
3939 4339 9.516314 GTTAAGTTTCAAATACTATTCATGGCC 57.484 33.333 0.00 0.00 0.00 5.36
3947 4347 9.908152 GGCAAAGTGTTAAGTTTCAAATACTAT 57.092 29.630 0.00 0.00 0.00 2.12
3948 4348 9.127277 AGGCAAAGTGTTAAGTTTCAAATACTA 57.873 29.630 0.00 0.00 0.00 1.82
3949 4349 8.007405 AGGCAAAGTGTTAAGTTTCAAATACT 57.993 30.769 0.00 0.00 0.00 2.12
3950 4350 8.539674 CAAGGCAAAGTGTTAAGTTTCAAATAC 58.460 33.333 0.00 0.00 0.00 1.89
3953 4353 5.872070 CCAAGGCAAAGTGTTAAGTTTCAAA 59.128 36.000 0.00 0.00 0.00 2.69
3956 4356 5.257082 TCCAAGGCAAAGTGTTAAGTTTC 57.743 39.130 0.00 0.00 0.00 2.78
3957 4357 5.669164 TTCCAAGGCAAAGTGTTAAGTTT 57.331 34.783 0.00 0.00 0.00 2.66
3958 4358 5.869649 ATTCCAAGGCAAAGTGTTAAGTT 57.130 34.783 0.00 0.00 0.00 2.66
3959 4359 5.600696 CAATTCCAAGGCAAAGTGTTAAGT 58.399 37.500 0.00 0.00 0.00 2.24
3966 4375 2.041701 ACTGCAATTCCAAGGCAAAGT 58.958 42.857 0.00 0.00 37.06 2.66
4111 4521 0.833287 GGCCTCAGGTGATAAGCTGA 59.167 55.000 11.55 11.55 0.00 4.26
4122 4532 0.036010 ACGTTCAGAATGGCCTCAGG 60.036 55.000 3.32 0.00 36.16 3.86
4143 4553 2.738846 CAGATGGTTTCAGAACAGTCGG 59.261 50.000 0.00 0.00 37.51 4.79
4192 4602 3.376546 GGCTTTGTCAAAATGCCAAACAA 59.623 39.130 18.91 0.00 38.45 2.83
4455 4865 3.470888 CCTGGGGAGTAGGGCACG 61.471 72.222 0.00 0.00 0.00 5.34
4573 4983 2.147150 GAAGCTGTGACACTTCCTTCC 58.853 52.381 7.20 0.00 37.01 3.46
4586 4996 0.032130 TCGCGTTCTTCTGAAGCTGT 59.968 50.000 12.54 0.00 32.15 4.40
4601 5011 2.701073 ATATTACCGGAGACTTCGCG 57.299 50.000 9.46 0.00 0.00 5.87
4602 5012 5.742926 GCTATAATATTACCGGAGACTTCGC 59.257 44.000 9.46 0.00 0.00 4.70
4634 5044 1.548269 CTTCTTCAGCCTTCCGAGTCT 59.452 52.381 0.00 0.00 0.00 3.24
4647 5057 3.717294 GGAGGGCCGCCTTCTTCA 61.717 66.667 20.20 0.00 29.89 3.02
4979 5392 1.466167 CGACAGGAGGCAAATTCAGTG 59.534 52.381 0.00 0.00 0.00 3.66
4981 5394 1.813513 ACGACAGGAGGCAAATTCAG 58.186 50.000 0.00 0.00 0.00 3.02
5005 5432 4.793216 CGGAGATAACAAATTTTTCGGCAG 59.207 41.667 0.00 0.00 0.00 4.85
5015 5442 6.324819 CAATTGCAACTCGGAGATAACAAAT 58.675 36.000 12.86 0.00 33.89 2.32
5018 5445 3.126858 GCAATTGCAACTCGGAGATAACA 59.873 43.478 25.36 0.00 41.59 2.41
5019 5446 3.487544 GGCAATTGCAACTCGGAGATAAC 60.488 47.826 30.32 5.35 44.36 1.89
5021 5448 2.092968 AGGCAATTGCAACTCGGAGATA 60.093 45.455 30.32 0.00 44.36 1.98
5022 5449 1.098050 GGCAATTGCAACTCGGAGAT 58.902 50.000 30.32 0.00 44.36 2.75
5023 5450 0.036732 AGGCAATTGCAACTCGGAGA 59.963 50.000 30.32 0.00 44.36 3.71
5024 5451 0.169672 CAGGCAATTGCAACTCGGAG 59.830 55.000 30.32 2.83 44.36 4.63
5025 5452 0.537143 ACAGGCAATTGCAACTCGGA 60.537 50.000 30.32 0.00 44.36 4.55
5026 5453 0.314935 AACAGGCAATTGCAACTCGG 59.685 50.000 30.32 16.21 44.36 4.63
5027 5454 2.138596 AAACAGGCAATTGCAACTCG 57.861 45.000 30.32 15.66 44.36 4.18
5028 5455 5.346822 CAGATTAAACAGGCAATTGCAACTC 59.653 40.000 30.32 13.97 44.36 3.01
5029 5456 5.221501 ACAGATTAAACAGGCAATTGCAACT 60.222 36.000 30.32 17.11 44.36 3.16
5030 5457 4.990426 ACAGATTAAACAGGCAATTGCAAC 59.010 37.500 30.32 15.06 44.36 4.17
5031 5458 5.212532 ACAGATTAAACAGGCAATTGCAA 57.787 34.783 30.32 15.91 44.36 4.08
5032 5459 4.280425 TGACAGATTAAACAGGCAATTGCA 59.720 37.500 30.32 9.75 44.36 4.08
5033 5460 4.808558 TGACAGATTAAACAGGCAATTGC 58.191 39.130 22.47 22.47 41.14 3.56
5034 5461 7.224362 TGTTTTGACAGATTAAACAGGCAATTG 59.776 33.333 0.00 0.00 36.98 2.32
5035 5462 7.271511 TGTTTTGACAGATTAAACAGGCAATT 58.728 30.769 0.00 0.00 36.98 2.32
5036 5463 6.815089 TGTTTTGACAGATTAAACAGGCAAT 58.185 32.000 0.00 0.00 36.98 3.56
5037 5464 6.214191 TGTTTTGACAGATTAAACAGGCAA 57.786 33.333 0.00 0.00 36.98 4.52
5038 5465 5.843673 TGTTTTGACAGATTAAACAGGCA 57.156 34.783 0.00 0.00 36.98 4.75
5039 5466 8.810652 TTTATGTTTTGACAGATTAAACAGGC 57.189 30.769 8.63 0.00 42.83 4.85
5059 5486 5.125097 AGCTCCTCACAAAAGCAGATTTATG 59.875 40.000 0.00 0.00 38.51 1.90
5068 5495 1.731720 ATCGAGCTCCTCACAAAAGC 58.268 50.000 8.47 0.00 36.27 3.51
5090 5517 1.004918 AGCAGGCTAACACGGACAC 60.005 57.895 0.00 0.00 0.00 3.67
5110 5537 1.985473 TGGGCCTAAATATGCTGCAG 58.015 50.000 10.11 10.11 0.00 4.41
5120 5547 5.753721 AAGCAATGTTAAATGGGCCTAAA 57.246 34.783 4.53 0.00 0.00 1.85
5198 5625 7.121759 AGCAGACAATAAATCTTGCAATGTACT 59.878 33.333 0.00 0.00 0.00 2.73
5226 5657 2.286523 CCACCGAGCTCAAGAGGGT 61.287 63.158 15.40 9.52 0.00 4.34
5341 5773 5.533903 CCACATTTATAATGCTGCCTCTTCT 59.466 40.000 0.00 0.00 0.00 2.85
5348 5780 7.161773 ACCATATCCACATTTATAATGCTGC 57.838 36.000 0.00 0.00 0.00 5.25
5388 5820 2.978278 TCCCATTGTCCCAAAAAGCATT 59.022 40.909 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.