Multiple sequence alignment - TraesCS2A01G120600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G120600 chr2A 100.000 3601 0 0 1 3601 70673254 70676854 0.000000e+00 6650.0
1 TraesCS2A01G120600 chr2A 91.589 214 11 4 309 519 70662700 70662909 4.550000e-74 289.0
2 TraesCS2A01G120600 chr2A 94.118 68 2 1 1 66 70662635 70662702 6.360000e-18 102.0
3 TraesCS2A01G120600 chr2D 96.203 1501 56 1 1851 3351 71622543 71624042 0.000000e+00 2455.0
4 TraesCS2A01G120600 chr2D 90.795 1358 59 31 529 1851 71621145 71622471 0.000000e+00 1755.0
5 TraesCS2A01G120600 chr2D 91.379 232 13 6 311 539 71616511 71616738 9.710000e-81 311.0
6 TraesCS2A01G120600 chr2D 88.398 181 18 1 3344 3524 71624172 71624349 7.830000e-52 215.0
7 TraesCS2A01G120600 chr2D 91.558 154 12 1 166 318 84918519 84918366 1.010000e-50 211.0
8 TraesCS2A01G120600 chr2B 93.733 1468 86 4 1885 3351 107905291 107906753 0.000000e+00 2196.0
9 TraesCS2A01G120600 chr2B 88.926 1183 59 37 547 1715 107903917 107905041 0.000000e+00 1393.0
10 TraesCS2A01G120600 chr2B 90.310 258 25 0 3344 3601 107906883 107907140 4.450000e-89 339.0
11 TraesCS2A01G120600 chr4A 89.669 726 70 4 1861 2586 559486919 559486199 0.000000e+00 920.0
12 TraesCS2A01G120600 chr4A 89.055 603 64 2 1029 1630 559487822 559487221 0.000000e+00 747.0
13 TraesCS2A01G120600 chr4A 90.476 84 3 2 818 900 559488133 559488054 4.920000e-19 106.0
14 TraesCS2A01G120600 chr4D 89.071 732 75 4 1855 2586 40401978 40402704 0.000000e+00 904.0
15 TraesCS2A01G120600 chr4D 88.723 603 66 2 1029 1630 40401115 40401716 0.000000e+00 736.0
16 TraesCS2A01G120600 chr4D 88.095 84 5 2 818 900 40400797 40400876 1.060000e-15 95.3
17 TraesCS2A01G120600 chr4B 88.677 733 76 6 1855 2586 58956415 58957141 0.000000e+00 887.0
18 TraesCS2A01G120600 chr4B 89.535 602 61 2 1029 1629 58955462 58956062 0.000000e+00 761.0
19 TraesCS2A01G120600 chr4B 87.903 124 15 0 66 189 568607410 568607533 2.900000e-31 147.0
20 TraesCS2A01G120600 chr4B 90.588 85 3 2 818 901 58955143 58955223 1.370000e-19 108.0
21 TraesCS2A01G120600 chr4B 90.588 85 3 2 818 901 58976572 58976492 1.370000e-19 108.0
22 TraesCS2A01G120600 chr7D 86.288 598 73 7 1050 1640 481697562 481696967 3.030000e-180 641.0
23 TraesCS2A01G120600 chr7B 86.395 588 72 6 1050 1630 507141176 507140590 1.410000e-178 636.0
24 TraesCS2A01G120600 chr7B 90.625 128 12 0 64 191 484625618 484625491 1.720000e-38 171.0
25 TraesCS2A01G120600 chr7B 88.189 127 15 0 64 190 84394088 84394214 6.230000e-33 152.0
26 TraesCS2A01G120600 chr7A 86.102 590 70 7 1050 1630 548585886 548585300 3.050000e-175 625.0
27 TraesCS2A01G120600 chr3B 85.859 594 72 9 1049 1630 708520837 708520244 3.950000e-174 621.0
28 TraesCS2A01G120600 chr3B 87.218 266 30 4 48 312 243250291 243250553 2.100000e-77 300.0
29 TraesCS2A01G120600 chr3B 82.114 246 35 7 69 311 749997817 749997578 6.100000e-48 202.0
30 TraesCS2A01G120600 chr3B 81.673 251 36 8 64 310 154206383 154206139 2.190000e-47 200.0
31 TraesCS2A01G120600 chr3A 85.787 591 75 6 1049 1630 671732039 671732629 5.110000e-173 617.0
32 TraesCS2A01G120600 chr3A 88.646 229 24 2 83 310 746316911 746316684 9.850000e-71 278.0
33 TraesCS2A01G120600 chr3D 84.874 595 76 10 1049 1630 536327406 536327999 4.010000e-164 588.0
34 TraesCS2A01G120600 chr3D 92.667 150 9 2 166 314 168947997 168947849 7.830000e-52 215.0
35 TraesCS2A01G120600 chr3D 80.237 253 37 13 63 310 400274555 400274799 1.030000e-40 178.0
36 TraesCS2A01G120600 chr6B 83.984 256 36 4 64 317 507405887 507405635 1.290000e-59 241.0
37 TraesCS2A01G120600 chr1A 92.667 150 9 2 166 314 144861418 144861566 7.830000e-52 215.0
38 TraesCS2A01G120600 chr1A 91.228 57 2 2 13 66 111124661 111124605 1.390000e-09 75.0
39 TraesCS2A01G120600 chr1B 92.000 150 11 1 166 314 464723333 464723482 3.640000e-50 209.0
40 TraesCS2A01G120600 chr1D 92.593 54 3 1 13 65 108102299 108102246 3.860000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G120600 chr2A 70673254 70676854 3600 False 6650.000000 6650 100.000000 1 3601 1 chr2A.!!$F1 3600
1 TraesCS2A01G120600 chr2D 71621145 71624349 3204 False 1475.000000 2455 91.798667 529 3524 3 chr2D.!!$F2 2995
2 TraesCS2A01G120600 chr2B 107903917 107907140 3223 False 1309.333333 2196 90.989667 547 3601 3 chr2B.!!$F1 3054
3 TraesCS2A01G120600 chr4A 559486199 559488133 1934 True 591.000000 920 89.733333 818 2586 3 chr4A.!!$R1 1768
4 TraesCS2A01G120600 chr4D 40400797 40402704 1907 False 578.433333 904 88.629667 818 2586 3 chr4D.!!$F1 1768
5 TraesCS2A01G120600 chr4B 58955143 58957141 1998 False 585.333333 887 89.600000 818 2586 3 chr4B.!!$F2 1768
6 TraesCS2A01G120600 chr7D 481696967 481697562 595 True 641.000000 641 86.288000 1050 1640 1 chr7D.!!$R1 590
7 TraesCS2A01G120600 chr7B 507140590 507141176 586 True 636.000000 636 86.395000 1050 1630 1 chr7B.!!$R2 580
8 TraesCS2A01G120600 chr7A 548585300 548585886 586 True 625.000000 625 86.102000 1050 1630 1 chr7A.!!$R1 580
9 TraesCS2A01G120600 chr3B 708520244 708520837 593 True 621.000000 621 85.859000 1049 1630 1 chr3B.!!$R2 581
10 TraesCS2A01G120600 chr3A 671732039 671732629 590 False 617.000000 617 85.787000 1049 1630 1 chr3A.!!$F1 581
11 TraesCS2A01G120600 chr3D 536327406 536327999 593 False 588.000000 588 84.874000 1049 1630 1 chr3D.!!$F2 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
522 523 0.037326 CTCTGCGCTCCCACTACAAA 60.037 55.0 9.73 0.0 0.00 2.83 F
523 524 0.394938 TCTGCGCTCCCACTACAAAA 59.605 50.0 9.73 0.0 0.00 2.44 F
1545 1790 0.671796 TGTGGCGGTATATCCAGTCG 59.328 55.0 0.00 0.0 35.57 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 1814 0.612744 GGAGAAGAAGCAGAGGCAGT 59.387 55.000 0.00 0.0 44.61 4.40 R
1835 2213 1.078426 GGGCCACATAACTGTCGCT 60.078 57.895 4.39 0.0 39.22 4.93 R
3421 4019 0.671251 GGGCTCGTCTCTAGTCATGG 59.329 60.000 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.920640 TTTTTGTAGGGTCGCATTTCAA 57.079 36.364 0.00 0.00 0.00 2.69
35 36 4.497473 TTTTGTAGGGTCGCATTTCAAG 57.503 40.909 0.00 0.00 0.00 3.02
36 37 2.107950 TGTAGGGTCGCATTTCAAGG 57.892 50.000 0.00 0.00 0.00 3.61
37 38 1.349688 TGTAGGGTCGCATTTCAAGGT 59.650 47.619 0.00 0.00 0.00 3.50
38 39 2.568062 TGTAGGGTCGCATTTCAAGGTA 59.432 45.455 0.00 0.00 0.00 3.08
39 40 3.199071 TGTAGGGTCGCATTTCAAGGTAT 59.801 43.478 0.00 0.00 0.00 2.73
40 41 3.366052 AGGGTCGCATTTCAAGGTATT 57.634 42.857 0.00 0.00 0.00 1.89
41 42 3.697166 AGGGTCGCATTTCAAGGTATTT 58.303 40.909 0.00 0.00 0.00 1.40
42 43 3.694566 AGGGTCGCATTTCAAGGTATTTC 59.305 43.478 0.00 0.00 0.00 2.17
43 44 3.442273 GGGTCGCATTTCAAGGTATTTCA 59.558 43.478 0.00 0.00 0.00 2.69
44 45 4.097892 GGGTCGCATTTCAAGGTATTTCAT 59.902 41.667 0.00 0.00 0.00 2.57
45 46 5.273944 GGTCGCATTTCAAGGTATTTCATC 58.726 41.667 0.00 0.00 0.00 2.92
46 47 5.273944 GTCGCATTTCAAGGTATTTCATCC 58.726 41.667 0.00 0.00 0.00 3.51
47 48 5.066505 GTCGCATTTCAAGGTATTTCATCCT 59.933 40.000 0.00 0.00 35.34 3.24
48 49 6.260050 GTCGCATTTCAAGGTATTTCATCCTA 59.740 38.462 0.00 0.00 33.27 2.94
49 50 6.826231 TCGCATTTCAAGGTATTTCATCCTAA 59.174 34.615 0.00 0.00 33.27 2.69
50 51 7.338196 TCGCATTTCAAGGTATTTCATCCTAAA 59.662 33.333 0.00 0.00 33.27 1.85
51 52 7.432252 CGCATTTCAAGGTATTTCATCCTAAAC 59.568 37.037 0.00 0.00 33.27 2.01
52 53 8.470002 GCATTTCAAGGTATTTCATCCTAAACT 58.530 33.333 0.00 0.00 33.27 2.66
60 61 9.802039 AGGTATTTCATCCTAAACTTTTACACA 57.198 29.630 0.00 0.00 31.66 3.72
76 77 9.654663 ACTTTTACACATATACTTCCTCTGTTC 57.345 33.333 0.00 0.00 0.00 3.18
77 78 9.099454 CTTTTACACATATACTTCCTCTGTTCC 57.901 37.037 0.00 0.00 0.00 3.62
78 79 5.615925 ACACATATACTTCCTCTGTTCCC 57.384 43.478 0.00 0.00 0.00 3.97
79 80 5.030147 ACACATATACTTCCTCTGTTCCCA 58.970 41.667 0.00 0.00 0.00 4.37
80 81 5.487488 ACACATATACTTCCTCTGTTCCCAA 59.513 40.000 0.00 0.00 0.00 4.12
81 82 6.012858 ACACATATACTTCCTCTGTTCCCAAA 60.013 38.462 0.00 0.00 0.00 3.28
82 83 7.056635 CACATATACTTCCTCTGTTCCCAAAT 58.943 38.462 0.00 0.00 0.00 2.32
83 84 8.210946 CACATATACTTCCTCTGTTCCCAAATA 58.789 37.037 0.00 0.00 0.00 1.40
84 85 8.211629 ACATATACTTCCTCTGTTCCCAAATAC 58.788 37.037 0.00 0.00 0.00 1.89
85 86 6.893020 ATACTTCCTCTGTTCCCAAATACT 57.107 37.500 0.00 0.00 0.00 2.12
86 87 5.584551 ACTTCCTCTGTTCCCAAATACTT 57.415 39.130 0.00 0.00 0.00 2.24
87 88 5.561679 ACTTCCTCTGTTCCCAAATACTTC 58.438 41.667 0.00 0.00 0.00 3.01
88 89 4.569719 TCCTCTGTTCCCAAATACTTCC 57.430 45.455 0.00 0.00 0.00 3.46
89 90 4.175962 TCCTCTGTTCCCAAATACTTCCT 58.824 43.478 0.00 0.00 0.00 3.36
90 91 4.225267 TCCTCTGTTCCCAAATACTTCCTC 59.775 45.833 0.00 0.00 0.00 3.71
91 92 4.226168 CCTCTGTTCCCAAATACTTCCTCT 59.774 45.833 0.00 0.00 0.00 3.69
92 93 5.165961 TCTGTTCCCAAATACTTCCTCTG 57.834 43.478 0.00 0.00 0.00 3.35
93 94 4.597507 TCTGTTCCCAAATACTTCCTCTGT 59.402 41.667 0.00 0.00 0.00 3.41
94 95 5.783360 TCTGTTCCCAAATACTTCCTCTGTA 59.217 40.000 0.00 0.00 0.00 2.74
95 96 6.271391 TCTGTTCCCAAATACTTCCTCTGTAA 59.729 38.462 0.00 0.00 0.00 2.41
96 97 6.843752 TGTTCCCAAATACTTCCTCTGTAAA 58.156 36.000 0.00 0.00 0.00 2.01
97 98 6.713450 TGTTCCCAAATACTTCCTCTGTAAAC 59.287 38.462 0.00 0.00 0.00 2.01
98 99 6.697641 TCCCAAATACTTCCTCTGTAAACT 57.302 37.500 0.00 0.00 0.00 2.66
99 100 7.801893 TCCCAAATACTTCCTCTGTAAACTA 57.198 36.000 0.00 0.00 0.00 2.24
100 101 8.209802 TCCCAAATACTTCCTCTGTAAACTAA 57.790 34.615 0.00 0.00 0.00 2.24
101 102 8.832735 TCCCAAATACTTCCTCTGTAAACTAAT 58.167 33.333 0.00 0.00 0.00 1.73
141 142 9.250624 GATGACTAAAATAGTGATCTAAACGCT 57.749 33.333 8.98 0.00 43.33 5.07
142 143 8.630278 TGACTAAAATAGTGATCTAAACGCTC 57.370 34.615 0.00 0.00 39.59 5.03
143 144 8.467598 TGACTAAAATAGTGATCTAAACGCTCT 58.532 33.333 0.00 0.00 39.59 4.09
144 145 9.303537 GACTAAAATAGTGATCTAAACGCTCTT 57.696 33.333 0.00 0.00 39.59 2.85
158 159 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
159 160 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
160 161 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
161 162 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
162 163 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
163 164 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
164 165 7.089538 GCTCTTATATTAGTTTACGGAGGGAC 58.910 42.308 0.00 0.00 0.00 4.46
166 167 9.512588 CTCTTATATTAGTTTACGGAGGGACTA 57.487 37.037 0.00 0.00 41.55 2.59
171 172 9.819754 ATATTAGTTTACGGAGGGACTATAAGT 57.180 33.333 0.00 0.00 41.55 2.24
172 173 7.573968 TTAGTTTACGGAGGGACTATAAGTC 57.426 40.000 0.00 0.00 44.32 3.01
173 174 5.764432 AGTTTACGGAGGGACTATAAGTCT 58.236 41.667 6.99 0.00 44.46 3.24
174 175 6.193504 AGTTTACGGAGGGACTATAAGTCTT 58.806 40.000 6.99 0.00 44.46 3.01
175 176 6.666980 AGTTTACGGAGGGACTATAAGTCTTT 59.333 38.462 6.99 0.00 44.46 2.52
176 177 7.179872 AGTTTACGGAGGGACTATAAGTCTTTT 59.820 37.037 6.99 0.00 44.46 2.27
177 178 7.486407 TTACGGAGGGACTATAAGTCTTTTT 57.514 36.000 6.99 0.00 44.46 1.94
178 179 8.593945 TTACGGAGGGACTATAAGTCTTTTTA 57.406 34.615 6.99 0.00 44.46 1.52
179 180 7.110043 ACGGAGGGACTATAAGTCTTTTTAG 57.890 40.000 6.99 0.00 44.46 1.85
180 181 6.894103 ACGGAGGGACTATAAGTCTTTTTAGA 59.106 38.462 6.99 0.00 44.46 2.10
181 182 7.068470 ACGGAGGGACTATAAGTCTTTTTAGAG 59.932 40.741 6.99 0.00 44.46 2.43
182 183 7.284944 CGGAGGGACTATAAGTCTTTTTAGAGA 59.715 40.741 6.99 0.00 44.46 3.10
183 184 9.150028 GGAGGGACTATAAGTCTTTTTAGAGAT 57.850 37.037 6.99 0.00 44.46 2.75
226 227 7.692460 ATGAAGCAAAATGAGTGAATCTACA 57.308 32.000 0.00 0.00 0.00 2.74
227 228 7.692460 TGAAGCAAAATGAGTGAATCTACAT 57.308 32.000 0.00 0.00 0.00 2.29
228 229 8.114331 TGAAGCAAAATGAGTGAATCTACATT 57.886 30.769 0.00 0.00 34.99 2.71
229 230 8.024865 TGAAGCAAAATGAGTGAATCTACATTG 58.975 33.333 0.00 0.00 34.02 2.82
230 231 7.458409 AGCAAAATGAGTGAATCTACATTGT 57.542 32.000 0.00 0.00 34.02 2.71
231 232 8.565896 AGCAAAATGAGTGAATCTACATTGTA 57.434 30.769 0.00 0.00 34.02 2.41
232 233 9.013229 AGCAAAATGAGTGAATCTACATTGTAA 57.987 29.630 0.00 0.00 34.02 2.41
233 234 9.624697 GCAAAATGAGTGAATCTACATTGTAAA 57.375 29.630 0.00 0.00 34.02 2.01
303 304 9.269453 CTAAAAAGACTTATATTTAGGACGGGG 57.731 37.037 8.91 0.00 33.69 5.73
304 305 5.820404 AAGACTTATATTTAGGACGGGGG 57.180 43.478 0.00 0.00 0.00 5.40
321 322 3.953542 GGGGGAGTACATTTCATCCTT 57.046 47.619 0.00 0.00 32.18 3.36
322 323 3.555966 GGGGGAGTACATTTCATCCTTG 58.444 50.000 0.00 0.00 32.18 3.61
323 324 2.952310 GGGGAGTACATTTCATCCTTGC 59.048 50.000 0.00 0.00 32.18 4.01
324 325 3.620488 GGGAGTACATTTCATCCTTGCA 58.380 45.455 0.00 0.00 32.18 4.08
325 326 4.210331 GGGAGTACATTTCATCCTTGCAT 58.790 43.478 0.00 0.00 32.18 3.96
326 327 5.376625 GGGAGTACATTTCATCCTTGCATA 58.623 41.667 0.00 0.00 32.18 3.14
327 328 6.006449 GGGAGTACATTTCATCCTTGCATAT 58.994 40.000 0.00 0.00 32.18 1.78
328 329 6.491403 GGGAGTACATTTCATCCTTGCATATT 59.509 38.462 0.00 0.00 32.18 1.28
329 330 7.014615 GGGAGTACATTTCATCCTTGCATATTT 59.985 37.037 0.00 0.00 32.18 1.40
330 331 8.416329 GGAGTACATTTCATCCTTGCATATTTT 58.584 33.333 0.00 0.00 0.00 1.82
331 332 9.807649 GAGTACATTTCATCCTTGCATATTTTT 57.192 29.630 0.00 0.00 0.00 1.94
394 395 9.816354 ATTTTTATAAAATTTCGGTCTCCATGG 57.184 29.630 11.33 4.97 0.00 3.66
395 396 8.582657 TTTTATAAAATTTCGGTCTCCATGGA 57.417 30.769 15.27 15.27 0.00 3.41
396 397 7.801716 TTATAAAATTTCGGTCTCCATGGAG 57.198 36.000 32.60 32.60 43.21 3.86
397 398 2.044123 AATTTCGGTCTCCATGGAGC 57.956 50.000 33.39 26.64 41.71 4.70
398 399 0.181350 ATTTCGGTCTCCATGGAGCC 59.819 55.000 33.39 31.69 41.71 4.70
401 402 4.554036 GGTCTCCATGGAGCCGGC 62.554 72.222 33.39 21.89 41.71 6.13
402 403 4.554036 GTCTCCATGGAGCCGGCC 62.554 72.222 33.39 15.07 41.71 6.13
414 415 3.666253 CCGGCCGGTCACCAAAAC 61.666 66.667 36.64 0.00 0.00 2.43
415 416 4.020378 CGGCCGGTCACCAAAACG 62.020 66.667 20.10 0.00 0.00 3.60
416 417 4.337060 GGCCGGTCACCAAAACGC 62.337 66.667 0.00 0.00 0.00 4.84
417 418 3.284449 GCCGGTCACCAAAACGCT 61.284 61.111 1.90 0.00 0.00 5.07
418 419 2.943653 CCGGTCACCAAAACGCTC 59.056 61.111 0.00 0.00 0.00 5.03
419 420 2.613506 CCGGTCACCAAAACGCTCC 61.614 63.158 0.00 0.00 0.00 4.70
420 421 1.890041 CGGTCACCAAAACGCTCCA 60.890 57.895 0.00 0.00 0.00 3.86
421 422 1.652563 GGTCACCAAAACGCTCCAC 59.347 57.895 0.00 0.00 0.00 4.02
422 423 0.818040 GGTCACCAAAACGCTCCACT 60.818 55.000 0.00 0.00 0.00 4.00
423 424 0.586802 GTCACCAAAACGCTCCACTC 59.413 55.000 0.00 0.00 0.00 3.51
424 425 0.534203 TCACCAAAACGCTCCACTCC 60.534 55.000 0.00 0.00 0.00 3.85
425 426 0.817634 CACCAAAACGCTCCACTCCA 60.818 55.000 0.00 0.00 0.00 3.86
426 427 0.818040 ACCAAAACGCTCCACTCCAC 60.818 55.000 0.00 0.00 0.00 4.02
427 428 0.817634 CCAAAACGCTCCACTCCACA 60.818 55.000 0.00 0.00 0.00 4.17
428 429 0.307760 CAAAACGCTCCACTCCACAC 59.692 55.000 0.00 0.00 0.00 3.82
429 430 0.107410 AAAACGCTCCACTCCACACA 60.107 50.000 0.00 0.00 0.00 3.72
430 431 0.532862 AAACGCTCCACTCCACACAG 60.533 55.000 0.00 0.00 0.00 3.66
431 432 1.686325 AACGCTCCACTCCACACAGT 61.686 55.000 0.00 0.00 0.00 3.55
432 433 1.665916 CGCTCCACTCCACACAGTG 60.666 63.158 0.00 0.00 43.13 3.66
433 434 1.963338 GCTCCACTCCACACAGTGC 60.963 63.158 0.00 0.00 42.29 4.40
434 435 1.447217 CTCCACTCCACACAGTGCA 59.553 57.895 0.00 0.00 42.29 4.57
435 436 0.882042 CTCCACTCCACACAGTGCAC 60.882 60.000 9.40 9.40 42.29 4.57
436 437 1.893808 CCACTCCACACAGTGCACC 60.894 63.158 14.63 0.00 42.29 5.01
437 438 1.153188 CACTCCACACAGTGCACCA 60.153 57.895 14.63 0.00 37.58 4.17
438 439 0.535780 CACTCCACACAGTGCACCAT 60.536 55.000 14.63 0.00 37.58 3.55
439 440 0.535780 ACTCCACACAGTGCACCATG 60.536 55.000 14.63 14.68 31.34 3.66
440 441 0.250424 CTCCACACAGTGCACCATGA 60.250 55.000 21.40 6.88 31.34 3.07
441 442 0.534877 TCCACACAGTGCACCATGAC 60.535 55.000 21.40 0.00 31.34 3.06
442 443 0.818852 CCACACAGTGCACCATGACA 60.819 55.000 21.40 0.00 31.34 3.58
443 444 1.241165 CACACAGTGCACCATGACAT 58.759 50.000 21.40 0.00 0.00 3.06
444 445 1.610038 CACACAGTGCACCATGACATT 59.390 47.619 21.40 0.00 0.00 2.71
445 446 1.881973 ACACAGTGCACCATGACATTC 59.118 47.619 21.40 0.00 0.00 2.67
446 447 2.156917 CACAGTGCACCATGACATTCT 58.843 47.619 14.63 0.00 0.00 2.40
447 448 2.555325 CACAGTGCACCATGACATTCTT 59.445 45.455 14.63 0.00 0.00 2.52
448 449 3.005050 CACAGTGCACCATGACATTCTTT 59.995 43.478 14.63 0.00 0.00 2.52
449 450 3.638160 ACAGTGCACCATGACATTCTTTT 59.362 39.130 14.63 0.00 0.00 2.27
450 451 4.099881 ACAGTGCACCATGACATTCTTTTT 59.900 37.500 14.63 0.00 0.00 1.94
451 452 5.301551 ACAGTGCACCATGACATTCTTTTTA 59.698 36.000 14.63 0.00 0.00 1.52
452 453 5.630680 CAGTGCACCATGACATTCTTTTTAC 59.369 40.000 14.63 0.00 0.00 2.01
453 454 4.616802 GTGCACCATGACATTCTTTTTACG 59.383 41.667 5.22 0.00 0.00 3.18
454 455 4.165779 GCACCATGACATTCTTTTTACGG 58.834 43.478 0.00 0.00 0.00 4.02
455 456 4.083003 GCACCATGACATTCTTTTTACGGA 60.083 41.667 0.00 0.00 0.00 4.69
456 457 5.393027 GCACCATGACATTCTTTTTACGGAT 60.393 40.000 0.00 0.00 0.00 4.18
457 458 6.258160 CACCATGACATTCTTTTTACGGATC 58.742 40.000 0.00 0.00 0.00 3.36
458 459 5.357032 ACCATGACATTCTTTTTACGGATCC 59.643 40.000 0.00 0.00 0.00 3.36
459 460 5.356751 CCATGACATTCTTTTTACGGATCCA 59.643 40.000 13.41 0.00 0.00 3.41
460 461 6.039717 CCATGACATTCTTTTTACGGATCCAT 59.960 38.462 13.41 0.00 0.00 3.41
461 462 6.435430 TGACATTCTTTTTACGGATCCATG 57.565 37.500 13.41 6.95 0.00 3.66
462 463 6.176896 TGACATTCTTTTTACGGATCCATGA 58.823 36.000 13.41 0.00 0.00 3.07
463 464 6.093495 TGACATTCTTTTTACGGATCCATGAC 59.907 38.462 13.41 5.61 0.00 3.06
464 465 5.943416 ACATTCTTTTTACGGATCCATGACA 59.057 36.000 13.41 0.00 0.00 3.58
465 466 6.603201 ACATTCTTTTTACGGATCCATGACAT 59.397 34.615 13.41 0.00 0.00 3.06
466 467 7.773224 ACATTCTTTTTACGGATCCATGACATA 59.227 33.333 13.41 0.00 0.00 2.29
467 468 7.786178 TTCTTTTTACGGATCCATGACATAG 57.214 36.000 13.41 0.65 0.00 2.23
468 469 6.884832 TCTTTTTACGGATCCATGACATAGT 58.115 36.000 13.41 1.03 0.00 2.12
469 470 7.335627 TCTTTTTACGGATCCATGACATAGTT 58.664 34.615 13.41 0.00 0.00 2.24
470 471 7.827236 TCTTTTTACGGATCCATGACATAGTTT 59.173 33.333 13.41 0.00 0.00 2.66
471 472 7.548196 TTTTACGGATCCATGACATAGTTTC 57.452 36.000 13.41 0.00 0.00 2.78
472 473 4.753516 ACGGATCCATGACATAGTTTCA 57.246 40.909 13.41 0.00 0.00 2.69
473 474 4.442706 ACGGATCCATGACATAGTTTCAC 58.557 43.478 13.41 0.00 0.00 3.18
474 475 3.809832 CGGATCCATGACATAGTTTCACC 59.190 47.826 13.41 0.00 0.00 4.02
475 476 4.443457 CGGATCCATGACATAGTTTCACCT 60.443 45.833 13.41 0.00 0.00 4.00
476 477 4.818546 GGATCCATGACATAGTTTCACCTG 59.181 45.833 6.95 0.00 0.00 4.00
477 478 3.609853 TCCATGACATAGTTTCACCTGC 58.390 45.455 0.00 0.00 0.00 4.85
478 479 3.264193 TCCATGACATAGTTTCACCTGCT 59.736 43.478 0.00 0.00 0.00 4.24
479 480 4.469586 TCCATGACATAGTTTCACCTGCTA 59.530 41.667 0.00 0.00 0.00 3.49
480 481 4.572389 CCATGACATAGTTTCACCTGCTAC 59.428 45.833 0.00 0.00 0.00 3.58
481 482 4.202245 TGACATAGTTTCACCTGCTACC 57.798 45.455 0.00 0.00 0.00 3.18
482 483 3.187700 GACATAGTTTCACCTGCTACCG 58.812 50.000 0.00 0.00 0.00 4.02
483 484 2.565834 ACATAGTTTCACCTGCTACCGT 59.434 45.455 0.00 0.00 0.00 4.83
484 485 2.736144 TAGTTTCACCTGCTACCGTG 57.264 50.000 0.00 0.00 0.00 4.94
485 486 0.602905 AGTTTCACCTGCTACCGTGC 60.603 55.000 0.00 0.00 0.00 5.34
486 487 1.666553 TTTCACCTGCTACCGTGCG 60.667 57.895 0.00 0.00 35.36 5.34
487 488 3.583276 TTCACCTGCTACCGTGCGG 62.583 63.158 9.29 9.29 42.03 5.69
502 503 2.577059 CGGCTCCGCTAGAAACCA 59.423 61.111 0.00 0.00 0.00 3.67
503 504 1.810030 CGGCTCCGCTAGAAACCAC 60.810 63.158 0.00 0.00 0.00 4.16
504 505 1.597461 GGCTCCGCTAGAAACCACT 59.403 57.895 0.00 0.00 0.00 4.00
505 506 0.460459 GGCTCCGCTAGAAACCACTC 60.460 60.000 0.00 0.00 0.00 3.51
506 507 0.533032 GCTCCGCTAGAAACCACTCT 59.467 55.000 0.00 0.00 0.00 3.24
507 508 1.737363 GCTCCGCTAGAAACCACTCTG 60.737 57.143 0.00 0.00 0.00 3.35
508 509 0.246635 TCCGCTAGAAACCACTCTGC 59.753 55.000 0.00 0.00 0.00 4.26
509 510 1.078759 CCGCTAGAAACCACTCTGCG 61.079 60.000 0.00 0.00 40.00 5.18
510 511 1.687494 CGCTAGAAACCACTCTGCGC 61.687 60.000 0.00 0.00 36.72 6.09
511 512 0.390472 GCTAGAAACCACTCTGCGCT 60.390 55.000 9.73 0.00 0.00 5.92
512 513 1.634702 CTAGAAACCACTCTGCGCTC 58.365 55.000 9.73 0.00 0.00 5.03
513 514 0.246635 TAGAAACCACTCTGCGCTCC 59.753 55.000 9.73 0.00 0.00 4.70
514 515 2.032681 AAACCACTCTGCGCTCCC 59.967 61.111 9.73 0.00 0.00 4.30
515 516 2.731691 GAAACCACTCTGCGCTCCCA 62.732 60.000 9.73 0.00 0.00 4.37
516 517 3.537206 AACCACTCTGCGCTCCCAC 62.537 63.158 9.73 0.00 0.00 4.61
517 518 3.699894 CCACTCTGCGCTCCCACT 61.700 66.667 9.73 0.00 0.00 4.00
518 519 2.351244 CCACTCTGCGCTCCCACTA 61.351 63.158 9.73 0.00 0.00 2.74
519 520 1.153745 CACTCTGCGCTCCCACTAC 60.154 63.158 9.73 0.00 0.00 2.73
520 521 1.606601 ACTCTGCGCTCCCACTACA 60.607 57.895 9.73 0.00 0.00 2.74
521 522 1.185618 ACTCTGCGCTCCCACTACAA 61.186 55.000 9.73 0.00 0.00 2.41
522 523 0.037326 CTCTGCGCTCCCACTACAAA 60.037 55.000 9.73 0.00 0.00 2.83
523 524 0.394938 TCTGCGCTCCCACTACAAAA 59.605 50.000 9.73 0.00 0.00 2.44
524 525 1.202710 TCTGCGCTCCCACTACAAAAA 60.203 47.619 9.73 0.00 0.00 1.94
525 526 1.812571 CTGCGCTCCCACTACAAAAAT 59.187 47.619 9.73 0.00 0.00 1.82
526 527 3.006940 CTGCGCTCCCACTACAAAAATA 58.993 45.455 9.73 0.00 0.00 1.40
527 528 3.413327 TGCGCTCCCACTACAAAAATAA 58.587 40.909 9.73 0.00 0.00 1.40
571 572 2.866762 CGCCATGACCTAGCTAGTTTTC 59.133 50.000 19.31 12.48 0.00 2.29
669 671 1.569493 CAAAGACACACGCTTCCGG 59.431 57.895 0.00 0.00 39.22 5.14
670 672 2.251642 AAAGACACACGCTTCCGGC 61.252 57.895 0.00 0.00 39.22 6.13
671 673 4.681978 AGACACACGCTTCCGGCC 62.682 66.667 0.00 0.00 39.22 6.13
818 825 8.214721 CTTCCTTTGGGTAGCTTTATTTAGAG 57.785 38.462 0.00 0.00 0.00 2.43
850 857 2.325583 TCACATATTCCGGCTGTTCC 57.674 50.000 0.00 0.00 0.00 3.62
851 858 1.557371 TCACATATTCCGGCTGTTCCA 59.443 47.619 0.00 0.00 34.01 3.53
852 859 2.172505 TCACATATTCCGGCTGTTCCAT 59.827 45.455 0.00 0.00 34.01 3.41
853 860 2.549754 CACATATTCCGGCTGTTCCATC 59.450 50.000 0.00 0.00 34.01 3.51
909 1100 2.803670 CGCCGCCGTCGTATATGG 60.804 66.667 0.00 0.00 37.31 2.74
911 1102 1.214589 GCCGCCGTCGTATATGGAT 59.785 57.895 0.00 0.00 36.17 3.41
957 1153 4.951094 AGCCCTCTATATAGAGCTTAACCG 59.049 45.833 27.81 15.45 46.57 4.44
968 1167 0.811281 GCTTAACCGGCAAGCTGATT 59.189 50.000 26.30 4.73 44.04 2.57
971 1170 3.066760 GCTTAACCGGCAAGCTGATTAAT 59.933 43.478 26.30 0.00 44.04 1.40
972 1171 4.274950 GCTTAACCGGCAAGCTGATTAATA 59.725 41.667 26.30 0.00 44.04 0.98
976 1175 2.030805 CCGGCAAGCTGATTAATAAGGC 60.031 50.000 1.69 0.98 0.00 4.35
987 1197 6.910972 GCTGATTAATAAGGCGAGGTAAAAAC 59.089 38.462 1.84 0.00 0.00 2.43
988 1198 7.414762 GCTGATTAATAAGGCGAGGTAAAAACA 60.415 37.037 1.84 0.00 0.00 2.83
989 1199 8.338072 TGATTAATAAGGCGAGGTAAAAACAA 57.662 30.769 0.00 0.00 0.00 2.83
990 1200 8.455682 TGATTAATAAGGCGAGGTAAAAACAAG 58.544 33.333 0.00 0.00 0.00 3.16
1071 1301 1.852157 GCTGGGTGGTGGAGATGGAA 61.852 60.000 0.00 0.00 0.00 3.53
1545 1790 0.671796 TGTGGCGGTATATCCAGTCG 59.328 55.000 0.00 0.00 35.57 4.18
1657 1905 3.780294 ACTACCCAATTACCTGCTCATCA 59.220 43.478 0.00 0.00 0.00 3.07
1666 1914 9.903682 CCAATTACCTGCTCATCAATTAATTAG 57.096 33.333 0.00 0.00 0.00 1.73
1669 1917 6.382869 ACCTGCTCATCAATTAATTAGTGC 57.617 37.500 0.00 7.31 0.00 4.40
1744 2093 5.880332 AGGTGGTACAAACTGCAATATACTG 59.120 40.000 0.00 0.00 44.16 2.74
1749 2098 7.065324 TGGTACAAACTGCAATATACTGCTAAC 59.935 37.037 7.78 0.00 38.31 2.34
2042 2502 1.966451 CCGCAAAGGTTCGAAGGCT 60.966 57.895 0.00 0.00 34.51 4.58
2133 2593 0.934496 CCTCGACGTGCACTTTGAAA 59.066 50.000 16.19 0.00 0.00 2.69
2177 2637 0.892755 TTAGGGTCGACGAATGCACT 59.107 50.000 9.92 0.00 0.00 4.40
2213 2673 0.940126 ATCTGATGGCATTCGAACGC 59.060 50.000 7.87 7.87 0.00 4.84
2487 2947 4.880120 GGGCTAACTTCATACAAACCTACC 59.120 45.833 0.00 0.00 0.00 3.18
2532 2992 2.696707 TCCCTCGTCGCCACTATTATTT 59.303 45.455 0.00 0.00 0.00 1.40
2807 3267 7.488322 TGTTGGTGAAATTCTTTCCTAACAAG 58.512 34.615 12.74 0.00 37.82 3.16
2810 3270 6.017440 TGGTGAAATTCTTTCCTAACAAGACG 60.017 38.462 0.00 0.00 38.90 4.18
2923 3383 5.545658 ACAACATATGTAAGTTGCCTTCG 57.454 39.130 9.21 0.00 46.79 3.79
2951 3411 7.696992 TGGAAACCTATCCACAACTAATTTC 57.303 36.000 0.00 0.00 44.52 2.17
2958 3418 4.481930 TCCACAACTAATTTCGCAACAG 57.518 40.909 0.00 0.00 0.00 3.16
3007 3467 5.424252 TCTTGTTAACTCGTATGGGAGGAAT 59.576 40.000 7.22 0.00 38.39 3.01
3019 3479 7.551617 TCGTATGGGAGGAATTTTAAGAGTTTC 59.448 37.037 0.00 0.00 0.00 2.78
3020 3480 7.553044 CGTATGGGAGGAATTTTAAGAGTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
3091 3551 5.762218 GGAAAGATCCACTTGTATCATGAGG 59.238 44.000 0.09 0.00 45.79 3.86
3141 3602 5.431765 AGTTTCAGTATCAGTGCCATTAGG 58.568 41.667 0.00 0.00 38.23 2.69
3148 3609 1.754803 TCAGTGCCATTAGGACTACCG 59.245 52.381 0.00 0.00 41.83 4.02
3201 3662 4.067972 TCGATATTTCCTAGGCACCAAC 57.932 45.455 2.96 0.00 0.00 3.77
3262 3723 7.119709 TCTGAACTCCAATATCAACGGATAA 57.880 36.000 0.00 0.00 39.36 1.75
3268 3729 6.317893 ACTCCAATATCAACGGATAAACCAAC 59.682 38.462 0.00 0.00 39.36 3.77
3289 3750 5.804692 ACGCTAGATACTTATCAGATCCG 57.195 43.478 0.00 0.00 35.17 4.18
3355 3953 4.783055 ACTGGCGAGATCTCTAACTAGAA 58.217 43.478 20.26 0.00 0.00 2.10
3396 3994 9.827198 ACCATATATATTTGTGGAATCAATGGT 57.173 29.630 14.40 9.42 34.46 3.55
3426 4024 5.439721 ACTTAATGTTAGCATGCTCCATGA 58.560 37.500 26.57 17.38 43.81 3.07
3540 4141 1.196911 TACCCACATCCTGTAACCCG 58.803 55.000 0.00 0.00 0.00 5.28
3554 4155 1.161843 AACCCGTGTTATTGCTTCCG 58.838 50.000 0.00 0.00 31.36 4.30
3556 4157 1.270947 ACCCGTGTTATTGCTTCCGAA 60.271 47.619 0.00 0.00 0.00 4.30
3559 4160 3.623960 CCCGTGTTATTGCTTCCGAATTA 59.376 43.478 0.00 0.00 0.00 1.40
3565 4166 5.064707 TGTTATTGCTTCCGAATTACAGCTC 59.935 40.000 0.00 0.00 33.15 4.09
3591 4192 5.627499 TGTGTTATGCTTGTCATTTCCTC 57.373 39.130 0.00 0.00 36.63 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.261825 CCTTGAAATGCGACCCTACAAAAA 60.262 41.667 0.00 0.00 0.00 1.94
14 15 3.254657 CCTTGAAATGCGACCCTACAAAA 59.745 43.478 0.00 0.00 0.00 2.44
15 16 2.817258 CCTTGAAATGCGACCCTACAAA 59.183 45.455 0.00 0.00 0.00 2.83
16 17 2.224670 ACCTTGAAATGCGACCCTACAA 60.225 45.455 0.00 0.00 0.00 2.41
17 18 1.349688 ACCTTGAAATGCGACCCTACA 59.650 47.619 0.00 0.00 0.00 2.74
18 19 2.109425 ACCTTGAAATGCGACCCTAC 57.891 50.000 0.00 0.00 0.00 3.18
19 20 4.497291 AATACCTTGAAATGCGACCCTA 57.503 40.909 0.00 0.00 0.00 3.53
20 21 3.366052 AATACCTTGAAATGCGACCCT 57.634 42.857 0.00 0.00 0.00 4.34
21 22 3.442273 TGAAATACCTTGAAATGCGACCC 59.558 43.478 0.00 0.00 0.00 4.46
22 23 4.695217 TGAAATACCTTGAAATGCGACC 57.305 40.909 0.00 0.00 0.00 4.79
23 24 5.066505 AGGATGAAATACCTTGAAATGCGAC 59.933 40.000 0.00 0.00 31.95 5.19
24 25 5.192927 AGGATGAAATACCTTGAAATGCGA 58.807 37.500 0.00 0.00 31.95 5.10
25 26 5.505173 AGGATGAAATACCTTGAAATGCG 57.495 39.130 0.00 0.00 31.95 4.73
26 27 8.470002 AGTTTAGGATGAAATACCTTGAAATGC 58.530 33.333 0.00 0.00 37.68 3.56
34 35 9.802039 TGTGTAAAAGTTTAGGATGAAATACCT 57.198 29.630 0.00 0.00 39.95 3.08
50 51 9.654663 GAACAGAGGAAGTATATGTGTAAAAGT 57.345 33.333 0.00 0.00 0.00 2.66
51 52 9.099454 GGAACAGAGGAAGTATATGTGTAAAAG 57.901 37.037 0.00 0.00 0.00 2.27
52 53 8.044908 GGGAACAGAGGAAGTATATGTGTAAAA 58.955 37.037 0.00 0.00 0.00 1.52
53 54 7.181305 TGGGAACAGAGGAAGTATATGTGTAAA 59.819 37.037 0.00 0.00 35.01 2.01
54 55 6.670464 TGGGAACAGAGGAAGTATATGTGTAA 59.330 38.462 0.00 0.00 35.01 2.41
55 56 6.199376 TGGGAACAGAGGAAGTATATGTGTA 58.801 40.000 0.00 0.00 35.01 2.90
56 57 5.030147 TGGGAACAGAGGAAGTATATGTGT 58.970 41.667 0.00 0.00 35.01 3.72
57 58 5.614324 TGGGAACAGAGGAAGTATATGTG 57.386 43.478 0.00 0.00 35.01 3.21
58 59 6.636454 TTTGGGAACAGAGGAAGTATATGT 57.364 37.500 0.00 0.00 44.54 2.29
59 60 8.432805 AGTATTTGGGAACAGAGGAAGTATATG 58.567 37.037 0.00 0.00 44.54 1.78
60 61 8.568617 AGTATTTGGGAACAGAGGAAGTATAT 57.431 34.615 0.00 0.00 44.54 0.86
61 62 7.989947 AGTATTTGGGAACAGAGGAAGTATA 57.010 36.000 0.00 0.00 44.54 1.47
62 63 6.893020 AGTATTTGGGAACAGAGGAAGTAT 57.107 37.500 0.00 0.00 44.54 2.12
63 64 6.296259 GGAAGTATTTGGGAACAGAGGAAGTA 60.296 42.308 0.00 0.00 44.54 2.24
64 65 5.515008 GGAAGTATTTGGGAACAGAGGAAGT 60.515 44.000 0.00 0.00 44.54 3.01
65 66 4.944317 GGAAGTATTTGGGAACAGAGGAAG 59.056 45.833 0.00 0.00 44.54 3.46
66 67 4.601857 AGGAAGTATTTGGGAACAGAGGAA 59.398 41.667 0.00 0.00 44.54 3.36
67 68 4.175962 AGGAAGTATTTGGGAACAGAGGA 58.824 43.478 0.00 0.00 44.54 3.71
68 69 4.226168 AGAGGAAGTATTTGGGAACAGAGG 59.774 45.833 0.00 0.00 44.54 3.69
69 70 5.181748 CAGAGGAAGTATTTGGGAACAGAG 58.818 45.833 0.00 0.00 44.54 3.35
70 71 4.597507 ACAGAGGAAGTATTTGGGAACAGA 59.402 41.667 0.00 0.00 44.54 3.41
71 72 4.911390 ACAGAGGAAGTATTTGGGAACAG 58.089 43.478 0.00 0.00 44.54 3.16
72 73 4.993705 ACAGAGGAAGTATTTGGGAACA 57.006 40.909 0.00 0.00 39.83 3.18
73 74 6.940867 AGTTTACAGAGGAAGTATTTGGGAAC 59.059 38.462 0.00 0.00 0.00 3.62
74 75 7.086685 AGTTTACAGAGGAAGTATTTGGGAA 57.913 36.000 0.00 0.00 0.00 3.97
75 76 6.697641 AGTTTACAGAGGAAGTATTTGGGA 57.302 37.500 0.00 0.00 0.00 4.37
114 115 9.250624 GCGTTTAGATCACTATTTTAGTCATCT 57.749 33.333 6.37 6.37 46.42 2.90
115 116 9.250624 AGCGTTTAGATCACTATTTTAGTCATC 57.749 33.333 0.00 0.00 36.65 2.92
116 117 9.250624 GAGCGTTTAGATCACTATTTTAGTCAT 57.749 33.333 0.00 0.00 36.76 3.06
117 118 8.467598 AGAGCGTTTAGATCACTATTTTAGTCA 58.532 33.333 0.00 0.00 37.82 3.41
118 119 8.859517 AGAGCGTTTAGATCACTATTTTAGTC 57.140 34.615 0.00 0.00 37.82 2.59
132 133 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
133 134 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
134 135 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
135 136 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
136 137 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
137 138 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
138 139 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
139 140 7.039853 AGTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
140 141 8.406730 AGTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
145 146 9.819754 ACTTATAGTCCCTCCGTAAACTAATAT 57.180 33.333 0.00 0.00 0.00 1.28
146 147 9.289782 GACTTATAGTCCCTCCGTAAACTAATA 57.710 37.037 0.00 0.00 39.28 0.98
147 148 8.003629 AGACTTATAGTCCCTCCGTAAACTAAT 58.996 37.037 3.33 0.00 46.18 1.73
148 149 7.349598 AGACTTATAGTCCCTCCGTAAACTAA 58.650 38.462 3.33 0.00 46.18 2.24
149 150 6.904626 AGACTTATAGTCCCTCCGTAAACTA 58.095 40.000 3.33 0.00 46.18 2.24
150 151 5.764432 AGACTTATAGTCCCTCCGTAAACT 58.236 41.667 3.33 0.00 46.18 2.66
151 152 6.462552 AAGACTTATAGTCCCTCCGTAAAC 57.537 41.667 3.33 0.00 46.18 2.01
152 153 7.486407 AAAAGACTTATAGTCCCTCCGTAAA 57.514 36.000 3.33 0.00 46.18 2.01
153 154 7.486407 AAAAAGACTTATAGTCCCTCCGTAA 57.514 36.000 3.33 0.00 46.18 3.18
154 155 8.055181 TCTAAAAAGACTTATAGTCCCTCCGTA 58.945 37.037 3.33 0.00 46.18 4.02
155 156 6.894103 TCTAAAAAGACTTATAGTCCCTCCGT 59.106 38.462 3.33 0.00 46.18 4.69
156 157 7.284944 TCTCTAAAAAGACTTATAGTCCCTCCG 59.715 40.741 3.33 0.00 46.18 4.63
157 158 8.536340 TCTCTAAAAAGACTTATAGTCCCTCC 57.464 38.462 3.33 0.00 46.18 4.30
200 201 9.399797 TGTAGATTCACTCATTTTGCTTCATAT 57.600 29.630 0.00 0.00 0.00 1.78
201 202 8.791327 TGTAGATTCACTCATTTTGCTTCATA 57.209 30.769 0.00 0.00 0.00 2.15
202 203 7.692460 TGTAGATTCACTCATTTTGCTTCAT 57.308 32.000 0.00 0.00 0.00 2.57
203 204 7.692460 ATGTAGATTCACTCATTTTGCTTCA 57.308 32.000 0.00 0.00 0.00 3.02
204 205 8.025445 ACAATGTAGATTCACTCATTTTGCTTC 58.975 33.333 0.00 0.00 30.25 3.86
205 206 7.889469 ACAATGTAGATTCACTCATTTTGCTT 58.111 30.769 0.00 0.00 30.25 3.91
206 207 7.458409 ACAATGTAGATTCACTCATTTTGCT 57.542 32.000 0.00 0.00 30.25 3.91
207 208 9.624697 TTTACAATGTAGATTCACTCATTTTGC 57.375 29.630 0.00 0.00 30.25 3.68
277 278 9.269453 CCCCGTCCTAAATATAAGTCTTTTTAG 57.731 37.037 7.75 7.75 33.47 1.85
278 279 8.212995 CCCCCGTCCTAAATATAAGTCTTTTTA 58.787 37.037 0.00 0.00 0.00 1.52
279 280 7.058525 CCCCCGTCCTAAATATAAGTCTTTTT 58.941 38.462 0.00 0.00 0.00 1.94
280 281 6.598503 CCCCCGTCCTAAATATAAGTCTTTT 58.401 40.000 0.00 0.00 0.00 2.27
281 282 6.183810 CCCCCGTCCTAAATATAAGTCTTT 57.816 41.667 0.00 0.00 0.00 2.52
282 283 5.820404 CCCCCGTCCTAAATATAAGTCTT 57.180 43.478 0.00 0.00 0.00 3.01
301 302 3.555966 CAAGGATGAAATGTACTCCCCC 58.444 50.000 0.00 0.00 0.00 5.40
302 303 2.952310 GCAAGGATGAAATGTACTCCCC 59.048 50.000 0.00 0.00 0.00 4.81
303 304 3.620488 TGCAAGGATGAAATGTACTCCC 58.380 45.455 0.00 0.00 0.00 4.30
304 305 7.516198 AATATGCAAGGATGAAATGTACTCC 57.484 36.000 0.00 0.00 0.00 3.85
305 306 9.807649 AAAAATATGCAAGGATGAAATGTACTC 57.192 29.630 0.00 0.00 0.00 2.59
368 369 9.816354 CCATGGAGACCGAAATTTTATAAAAAT 57.184 29.630 14.35 3.71 0.00 1.82
369 370 9.026121 TCCATGGAGACCGAAATTTTATAAAAA 57.974 29.630 11.44 0.00 0.00 1.94
370 371 8.582657 TCCATGGAGACCGAAATTTTATAAAA 57.417 30.769 11.44 12.85 0.00 1.52
371 372 7.201785 GCTCCATGGAGACCGAAATTTTATAAA 60.202 37.037 40.29 0.93 44.53 1.40
372 373 6.262273 GCTCCATGGAGACCGAAATTTTATAA 59.738 38.462 40.29 1.27 44.53 0.98
373 374 5.763204 GCTCCATGGAGACCGAAATTTTATA 59.237 40.000 40.29 1.65 44.53 0.98
374 375 4.580580 GCTCCATGGAGACCGAAATTTTAT 59.419 41.667 40.29 0.00 44.53 1.40
375 376 3.945285 GCTCCATGGAGACCGAAATTTTA 59.055 43.478 40.29 2.75 44.53 1.52
376 377 2.755103 GCTCCATGGAGACCGAAATTTT 59.245 45.455 40.29 0.00 44.53 1.82
377 378 2.369394 GCTCCATGGAGACCGAAATTT 58.631 47.619 40.29 0.00 44.53 1.82
378 379 1.408822 GGCTCCATGGAGACCGAAATT 60.409 52.381 40.29 0.00 44.22 1.82
379 380 0.181350 GGCTCCATGGAGACCGAAAT 59.819 55.000 40.29 0.00 44.22 2.17
380 381 1.602237 GGCTCCATGGAGACCGAAA 59.398 57.895 40.29 5.59 44.22 3.46
381 382 3.309582 GGCTCCATGGAGACCGAA 58.690 61.111 40.29 6.40 44.22 4.30
385 386 4.554036 GGCCGGCTCCATGGAGAC 62.554 72.222 40.29 37.53 46.38 3.36
397 398 3.666253 GTTTTGGTGACCGGCCGG 61.666 66.667 42.17 42.17 42.03 6.13
398 399 4.020378 CGTTTTGGTGACCGGCCG 62.020 66.667 21.04 21.04 0.00 6.13
399 400 4.337060 GCGTTTTGGTGACCGGCC 62.337 66.667 0.00 0.00 0.00 6.13
400 401 3.249973 GAGCGTTTTGGTGACCGGC 62.250 63.158 0.00 0.00 0.00 6.13
401 402 2.613506 GGAGCGTTTTGGTGACCGG 61.614 63.158 0.00 0.00 0.00 5.28
402 403 1.890041 TGGAGCGTTTTGGTGACCG 60.890 57.895 0.00 0.00 0.00 4.79
403 404 0.818040 AGTGGAGCGTTTTGGTGACC 60.818 55.000 0.00 0.00 0.00 4.02
404 405 0.586802 GAGTGGAGCGTTTTGGTGAC 59.413 55.000 0.00 0.00 0.00 3.67
405 406 0.534203 GGAGTGGAGCGTTTTGGTGA 60.534 55.000 0.00 0.00 0.00 4.02
406 407 0.817634 TGGAGTGGAGCGTTTTGGTG 60.818 55.000 0.00 0.00 0.00 4.17
407 408 0.818040 GTGGAGTGGAGCGTTTTGGT 60.818 55.000 0.00 0.00 0.00 3.67
408 409 0.817634 TGTGGAGTGGAGCGTTTTGG 60.818 55.000 0.00 0.00 0.00 3.28
409 410 0.307760 GTGTGGAGTGGAGCGTTTTG 59.692 55.000 0.00 0.00 0.00 2.44
410 411 0.107410 TGTGTGGAGTGGAGCGTTTT 60.107 50.000 0.00 0.00 0.00 2.43
411 412 0.532862 CTGTGTGGAGTGGAGCGTTT 60.533 55.000 0.00 0.00 0.00 3.60
412 413 1.069765 CTGTGTGGAGTGGAGCGTT 59.930 57.895 0.00 0.00 0.00 4.84
413 414 2.134287 ACTGTGTGGAGTGGAGCGT 61.134 57.895 0.00 0.00 0.00 5.07
414 415 1.665916 CACTGTGTGGAGTGGAGCG 60.666 63.158 0.00 0.00 39.85 5.03
415 416 1.963338 GCACTGTGTGGAGTGGAGC 60.963 63.158 9.86 0.00 43.17 4.70
416 417 0.882042 GTGCACTGTGTGGAGTGGAG 60.882 60.000 10.32 0.00 44.01 3.86
417 418 1.146041 GTGCACTGTGTGGAGTGGA 59.854 57.895 10.32 0.00 43.17 4.02
418 419 1.893808 GGTGCACTGTGTGGAGTGG 60.894 63.158 17.98 0.00 43.17 4.00
419 420 0.535780 ATGGTGCACTGTGTGGAGTG 60.536 55.000 17.98 0.00 45.34 3.51
420 421 0.535780 CATGGTGCACTGTGTGGAGT 60.536 55.000 17.98 0.00 33.95 3.85
421 422 0.250424 TCATGGTGCACTGTGTGGAG 60.250 55.000 17.98 0.00 33.95 3.86
422 423 0.534877 GTCATGGTGCACTGTGTGGA 60.535 55.000 17.98 3.61 33.64 4.02
423 424 0.818852 TGTCATGGTGCACTGTGTGG 60.819 55.000 17.98 1.16 33.64 4.17
424 425 1.241165 ATGTCATGGTGCACTGTGTG 58.759 50.000 17.98 10.42 36.51 3.82
425 426 1.881973 GAATGTCATGGTGCACTGTGT 59.118 47.619 17.98 0.02 0.00 3.72
426 427 2.156917 AGAATGTCATGGTGCACTGTG 58.843 47.619 17.98 15.34 0.00 3.66
427 428 2.574006 AGAATGTCATGGTGCACTGT 57.426 45.000 17.98 2.45 0.00 3.55
428 429 3.928727 AAAGAATGTCATGGTGCACTG 57.071 42.857 17.98 8.37 0.00 3.66
429 430 4.942761 AAAAAGAATGTCATGGTGCACT 57.057 36.364 17.98 0.00 0.00 4.40
430 431 4.616802 CGTAAAAAGAATGTCATGGTGCAC 59.383 41.667 8.80 8.80 0.00 4.57
431 432 4.320861 CCGTAAAAAGAATGTCATGGTGCA 60.321 41.667 0.00 0.00 0.00 4.57
432 433 4.083003 TCCGTAAAAAGAATGTCATGGTGC 60.083 41.667 0.00 0.00 0.00 5.01
433 434 5.621197 TCCGTAAAAAGAATGTCATGGTG 57.379 39.130 0.00 0.00 0.00 4.17
434 435 5.357032 GGATCCGTAAAAAGAATGTCATGGT 59.643 40.000 0.00 0.00 0.00 3.55
435 436 5.356751 TGGATCCGTAAAAAGAATGTCATGG 59.643 40.000 7.39 0.00 0.00 3.66
436 437 6.435430 TGGATCCGTAAAAAGAATGTCATG 57.565 37.500 7.39 0.00 0.00 3.07
437 438 6.828273 TCATGGATCCGTAAAAAGAATGTCAT 59.172 34.615 6.04 0.00 0.00 3.06
438 439 6.093495 GTCATGGATCCGTAAAAAGAATGTCA 59.907 38.462 6.04 0.00 0.00 3.58
439 440 6.093495 TGTCATGGATCCGTAAAAAGAATGTC 59.907 38.462 6.04 0.12 0.00 3.06
440 441 5.943416 TGTCATGGATCCGTAAAAAGAATGT 59.057 36.000 6.04 0.00 0.00 2.71
441 442 6.435430 TGTCATGGATCCGTAAAAAGAATG 57.565 37.500 6.04 1.27 0.00 2.67
442 443 7.993183 ACTATGTCATGGATCCGTAAAAAGAAT 59.007 33.333 6.04 0.00 0.00 2.40
443 444 7.335627 ACTATGTCATGGATCCGTAAAAAGAA 58.664 34.615 6.04 0.00 0.00 2.52
444 445 6.884832 ACTATGTCATGGATCCGTAAAAAGA 58.115 36.000 6.04 0.00 0.00 2.52
445 446 7.553881 AACTATGTCATGGATCCGTAAAAAG 57.446 36.000 6.04 3.82 0.00 2.27
446 447 7.608376 TGAAACTATGTCATGGATCCGTAAAAA 59.392 33.333 6.04 0.00 0.00 1.94
447 448 7.065324 GTGAAACTATGTCATGGATCCGTAAAA 59.935 37.037 6.04 0.00 0.00 1.52
448 449 6.537301 GTGAAACTATGTCATGGATCCGTAAA 59.463 38.462 6.04 0.00 0.00 2.01
449 450 6.046593 GTGAAACTATGTCATGGATCCGTAA 58.953 40.000 6.04 0.00 0.00 3.18
450 451 5.452776 GGTGAAACTATGTCATGGATCCGTA 60.453 44.000 6.04 0.00 36.74 4.02
451 452 4.442706 GTGAAACTATGTCATGGATCCGT 58.557 43.478 7.39 3.27 0.00 4.69
452 453 3.809832 GGTGAAACTATGTCATGGATCCG 59.190 47.826 7.39 0.00 36.74 4.18
453 454 4.818546 CAGGTGAAACTATGTCATGGATCC 59.181 45.833 4.20 4.20 36.74 3.36
454 455 4.274459 GCAGGTGAAACTATGTCATGGATC 59.726 45.833 2.78 2.12 36.74 3.36
455 456 4.080129 AGCAGGTGAAACTATGTCATGGAT 60.080 41.667 2.78 0.00 36.74 3.41
456 457 3.264193 AGCAGGTGAAACTATGTCATGGA 59.736 43.478 2.78 0.00 36.74 3.41
457 458 3.614092 AGCAGGTGAAACTATGTCATGG 58.386 45.455 0.00 0.00 36.74 3.66
458 459 4.572389 GGTAGCAGGTGAAACTATGTCATG 59.428 45.833 0.00 0.00 36.74 3.07
459 460 4.680708 CGGTAGCAGGTGAAACTATGTCAT 60.681 45.833 0.00 0.00 36.74 3.06
460 461 3.368013 CGGTAGCAGGTGAAACTATGTCA 60.368 47.826 0.00 0.00 36.74 3.58
461 462 3.187700 CGGTAGCAGGTGAAACTATGTC 58.812 50.000 0.00 0.00 36.74 3.06
462 463 2.565834 ACGGTAGCAGGTGAAACTATGT 59.434 45.455 0.00 0.00 36.74 2.29
463 464 2.930040 CACGGTAGCAGGTGAAACTATG 59.070 50.000 0.00 0.00 36.25 2.23
464 465 2.677037 GCACGGTAGCAGGTGAAACTAT 60.677 50.000 4.40 0.00 36.25 2.12
465 466 1.337447 GCACGGTAGCAGGTGAAACTA 60.337 52.381 4.40 0.00 36.25 2.24
466 467 0.602905 GCACGGTAGCAGGTGAAACT 60.603 55.000 4.40 0.00 36.25 2.66
467 468 1.866925 GCACGGTAGCAGGTGAAAC 59.133 57.895 4.40 0.00 36.25 2.78
468 469 1.666553 CGCACGGTAGCAGGTGAAA 60.667 57.895 4.40 0.00 36.25 2.69
469 470 2.048597 CGCACGGTAGCAGGTGAA 60.049 61.111 4.40 0.00 36.25 3.18
470 471 4.063967 CCGCACGGTAGCAGGTGA 62.064 66.667 0.00 0.00 36.25 4.02
488 489 1.737363 GCAGAGTGGTTTCTAGCGGAG 60.737 57.143 0.00 0.00 0.00 4.63
489 490 0.246635 GCAGAGTGGTTTCTAGCGGA 59.753 55.000 0.00 0.00 0.00 5.54
490 491 1.078759 CGCAGAGTGGTTTCTAGCGG 61.079 60.000 0.00 0.00 39.15 5.52
491 492 1.687494 GCGCAGAGTGGTTTCTAGCG 61.687 60.000 0.30 0.00 42.31 4.26
492 493 0.390472 AGCGCAGAGTGGTTTCTAGC 60.390 55.000 11.47 0.00 33.13 3.42
493 494 1.634702 GAGCGCAGAGTGGTTTCTAG 58.365 55.000 11.47 0.00 0.00 2.43
494 495 0.246635 GGAGCGCAGAGTGGTTTCTA 59.753 55.000 11.47 0.00 0.00 2.10
495 496 1.004440 GGAGCGCAGAGTGGTTTCT 60.004 57.895 11.47 0.00 0.00 2.52
496 497 2.035442 GGGAGCGCAGAGTGGTTTC 61.035 63.158 11.47 0.00 0.00 2.78
497 498 2.032681 GGGAGCGCAGAGTGGTTT 59.967 61.111 11.47 0.00 0.00 3.27
498 499 3.241530 TGGGAGCGCAGAGTGGTT 61.242 61.111 11.47 0.00 0.00 3.67
499 500 4.008933 GTGGGAGCGCAGAGTGGT 62.009 66.667 11.47 0.00 0.00 4.16
500 501 2.351244 TAGTGGGAGCGCAGAGTGG 61.351 63.158 11.47 0.00 0.00 4.00
501 502 1.153745 GTAGTGGGAGCGCAGAGTG 60.154 63.158 11.47 0.00 0.00 3.51
502 503 1.185618 TTGTAGTGGGAGCGCAGAGT 61.186 55.000 11.47 0.00 0.00 3.24
503 504 0.037326 TTTGTAGTGGGAGCGCAGAG 60.037 55.000 11.47 0.00 0.00 3.35
504 505 0.394938 TTTTGTAGTGGGAGCGCAGA 59.605 50.000 11.47 0.00 0.00 4.26
505 506 1.234821 TTTTTGTAGTGGGAGCGCAG 58.765 50.000 11.47 0.00 0.00 5.18
506 507 1.904287 ATTTTTGTAGTGGGAGCGCA 58.096 45.000 11.47 0.00 0.00 6.09
507 508 4.428615 TTTATTTTTGTAGTGGGAGCGC 57.571 40.909 0.00 0.00 0.00 5.92
508 509 5.105917 ACCATTTATTTTTGTAGTGGGAGCG 60.106 40.000 0.00 0.00 0.00 5.03
509 510 6.280855 ACCATTTATTTTTGTAGTGGGAGC 57.719 37.500 0.00 0.00 0.00 4.70
526 527 9.463443 GCGCATATTTAGAGAAAAATACCATTT 57.537 29.630 0.30 0.00 34.90 2.32
527 528 8.082242 GGCGCATATTTAGAGAAAAATACCATT 58.918 33.333 10.83 0.00 34.90 3.16
689 691 3.498777 GGCAAAGATAAGGATAAGACCGC 59.501 47.826 0.00 0.00 34.73 5.68
786 793 2.356227 GCTACCCAAAGGAAGCTAAGCT 60.356 50.000 0.00 0.00 37.19 3.74
787 794 2.017782 GCTACCCAAAGGAAGCTAAGC 58.982 52.381 0.00 0.00 36.73 3.09
788 795 3.636153 AGCTACCCAAAGGAAGCTAAG 57.364 47.619 10.04 0.00 39.09 2.18
789 796 4.382386 AAAGCTACCCAAAGGAAGCTAA 57.618 40.909 11.56 0.00 39.64 3.09
815 822 8.589338 GGAATATGTGATAATGGTGTCTACTCT 58.411 37.037 0.00 0.00 0.00 3.24
816 823 7.542477 CGGAATATGTGATAATGGTGTCTACTC 59.458 40.741 0.00 0.00 0.00 2.59
817 824 7.378966 CGGAATATGTGATAATGGTGTCTACT 58.621 38.462 0.00 0.00 0.00 2.57
818 825 6.590292 CCGGAATATGTGATAATGGTGTCTAC 59.410 42.308 0.00 0.00 0.00 2.59
850 857 8.392372 AGATATGAAATGACACTTCATGGATG 57.608 34.615 19.65 0.00 42.00 3.51
851 858 8.991783 AAGATATGAAATGACACTTCATGGAT 57.008 30.769 19.65 8.19 42.00 3.41
852 859 8.680001 CAAAGATATGAAATGACACTTCATGGA 58.320 33.333 19.65 3.82 42.00 3.41
853 860 7.919091 CCAAAGATATGAAATGACACTTCATGG 59.081 37.037 19.65 10.47 42.00 3.66
957 1153 2.878406 TCGCCTTATTAATCAGCTTGCC 59.122 45.455 0.00 0.00 0.00 4.52
968 1167 7.163441 AGACTTGTTTTTACCTCGCCTTATTA 58.837 34.615 0.00 0.00 0.00 0.98
971 1170 4.964593 AGACTTGTTTTTACCTCGCCTTA 58.035 39.130 0.00 0.00 0.00 2.69
972 1171 3.816994 AGACTTGTTTTTACCTCGCCTT 58.183 40.909 0.00 0.00 0.00 4.35
1010 1231 5.057149 GCGCCTCATCTATCTTTTCCTTAA 58.943 41.667 0.00 0.00 0.00 1.85
1011 1232 4.503296 GGCGCCTCATCTATCTTTTCCTTA 60.503 45.833 22.15 0.00 0.00 2.69
1398 1643 1.679311 GGTGACCATGAGCTCCACA 59.321 57.895 12.15 1.43 0.00 4.17
1569 1814 0.612744 GGAGAAGAAGCAGAGGCAGT 59.387 55.000 0.00 0.00 44.61 4.40
1640 1888 9.903682 CTAATTAATTGATGAGCAGGTAATTGG 57.096 33.333 11.05 4.86 33.23 3.16
1666 1914 9.914131 AAAAGGTGAAGAAAAGATAATAAGCAC 57.086 29.630 0.00 0.00 0.00 4.40
1727 2076 7.630242 ATGTTAGCAGTATATTGCAGTTTGT 57.370 32.000 20.78 3.22 46.47 2.83
1744 2093 9.180678 GTACATATGCACCATTTTAATGTTAGC 57.819 33.333 1.58 3.72 34.60 3.09
1749 2098 9.669353 GAGAAGTACATATGCACCATTTTAATG 57.331 33.333 1.58 0.00 36.17 1.90
1812 2190 9.253275 CGCTGTTGCATTTTATTCAATTTTAAG 57.747 29.630 0.00 0.00 39.64 1.85
1835 2213 1.078426 GGGCCACATAACTGTCGCT 60.078 57.895 4.39 0.00 39.22 4.93
2042 2502 4.876701 GCGGAGGGCATGACATAA 57.123 55.556 0.00 0.00 42.87 1.90
2063 2523 6.716934 TTAATTCCTGCTTCGTAGATCTCT 57.283 37.500 0.00 0.00 35.04 3.10
2133 2593 1.508088 GCATGCTTAGCACGCCTTT 59.492 52.632 14.71 0.00 42.11 3.11
2487 2947 2.040278 TGAACACCCAAGGATTCCTCAG 59.960 50.000 5.48 1.92 30.89 3.35
2492 2952 3.195610 GGGAAATGAACACCCAAGGATTC 59.804 47.826 0.00 0.00 42.81 2.52
2532 2992 4.393834 TGCAAGAGTGTGGCAACTAATAA 58.606 39.130 0.00 0.00 34.05 1.40
2617 3077 2.136298 TGGCTGTTTTGGAACTGACA 57.864 45.000 1.24 1.24 46.55 3.58
2621 3081 6.322201 CCTAATATGATGGCTGTTTTGGAACT 59.678 38.462 0.00 0.00 36.70 3.01
2662 3122 9.787435 ATTAATAGAGTAATTGCCGGTCAAATA 57.213 29.630 13.95 8.41 38.34 1.40
2807 3267 6.289745 TCAAAATACCAGTTGTGTTACGTC 57.710 37.500 0.00 0.00 0.00 4.34
2810 3270 7.188157 TCGTTTCAAAATACCAGTTGTGTTAC 58.812 34.615 0.00 0.00 0.00 2.50
2855 3315 9.469097 AGTATATTTAGGTGCTCATAGTAGGAG 57.531 37.037 7.47 7.47 35.47 3.69
2951 3411 2.712057 AGGCTTTTGAATCTGTTGCG 57.288 45.000 0.00 0.00 0.00 4.85
2958 3418 6.870439 AGCATTTTACTCAAGGCTTTTGAATC 59.130 34.615 0.00 0.00 0.00 2.52
3007 3467 8.706492 TTGTAGTCGTTGAGAAACTCTTAAAA 57.294 30.769 0.00 0.00 0.00 1.52
3019 3479 4.113354 GGATAAGCCTTGTAGTCGTTGAG 58.887 47.826 0.00 0.00 0.00 3.02
3020 3480 3.512329 TGGATAAGCCTTGTAGTCGTTGA 59.488 43.478 0.00 0.00 37.63 3.18
3116 3577 4.558226 ATGGCACTGATACTGAAACTCA 57.442 40.909 0.00 0.00 0.00 3.41
3124 3585 4.589374 GGTAGTCCTAATGGCACTGATACT 59.411 45.833 0.00 0.00 0.00 2.12
3141 3602 3.877508 CCATCCAATTTCCTTCGGTAGTC 59.122 47.826 0.00 0.00 0.00 2.59
3148 3609 2.034878 GGCTCCCATCCAATTTCCTTC 58.965 52.381 0.00 0.00 0.00 3.46
3173 3634 6.758886 GGTGCCTAGGAAATATCGAATGATAG 59.241 42.308 14.75 0.00 40.32 2.08
3262 3723 6.710597 TCTGATAAGTATCTAGCGTTGGTT 57.289 37.500 0.31 0.00 33.88 3.67
3268 3729 5.804692 ACGGATCTGATAAGTATCTAGCG 57.195 43.478 9.00 0.00 33.88 4.26
3393 3991 9.796120 GCATGCTAACATTAAGTTAATTTACCA 57.204 29.630 11.37 6.68 41.89 3.25
3405 4003 5.439721 AGTCATGGAGCATGCTAACATTAA 58.560 37.500 26.25 17.90 41.18 1.40
3414 4012 2.753296 GTCTCTAGTCATGGAGCATGC 58.247 52.381 10.51 10.51 41.18 4.06
3420 4018 1.681538 GGCTCGTCTCTAGTCATGGA 58.318 55.000 0.00 0.00 0.00 3.41
3421 4019 0.671251 GGGCTCGTCTCTAGTCATGG 59.329 60.000 0.00 0.00 0.00 3.66
3426 4024 1.509373 TAGAGGGGCTCGTCTCTAGT 58.491 55.000 13.06 0.00 40.45 2.57
3476 4074 5.006386 GTGTGGACAGGAAAGATGAAGAAT 58.994 41.667 0.00 0.00 0.00 2.40
3477 4075 4.389374 GTGTGGACAGGAAAGATGAAGAA 58.611 43.478 0.00 0.00 0.00 2.52
3478 4076 3.244561 GGTGTGGACAGGAAAGATGAAGA 60.245 47.826 0.00 0.00 0.00 2.87
3540 4141 5.028375 GCTGTAATTCGGAAGCAATAACAC 58.972 41.667 0.00 0.00 35.69 3.32
3554 4155 7.253422 AGCATAACACATTTGAGCTGTAATTC 58.747 34.615 0.00 0.00 0.00 2.17
3556 4157 6.764308 AGCATAACACATTTGAGCTGTAAT 57.236 33.333 0.00 0.00 0.00 1.89
3559 4160 4.279169 ACAAGCATAACACATTTGAGCTGT 59.721 37.500 0.00 0.00 0.00 4.40
3565 4166 6.869913 AGGAAATGACAAGCATAACACATTTG 59.130 34.615 0.00 0.00 37.82 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.