Multiple sequence alignment - TraesCS2A01G119600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G119600 chr2A 100.000 4285 0 0 1 4285 70101092 70105376 0.000000e+00 7914.0
1 TraesCS2A01G119600 chr2A 79.641 167 31 2 2102 2265 13066925 13066759 2.710000e-22 117.0
2 TraesCS2A01G119600 chr2D 88.311 1403 89 41 677 2050 70622837 70624193 0.000000e+00 1613.0
3 TraesCS2A01G119600 chr2D 90.036 843 45 23 2654 3473 70624732 70625558 0.000000e+00 1055.0
4 TraesCS2A01G119600 chr2D 93.274 669 40 4 3618 4285 70626643 70627307 0.000000e+00 981.0
5 TraesCS2A01G119600 chr2D 85.397 541 46 13 3612 4138 70629093 70629614 8.160000e-147 531.0
6 TraesCS2A01G119600 chr2D 83.657 361 24 17 2295 2643 70624281 70624618 1.500000e-79 307.0
7 TraesCS2A01G119600 chr2D 87.245 196 20 2 12 203 70622195 70622389 7.210000e-53 219.0
8 TraesCS2A01G119600 chr2D 86.928 153 11 4 379 522 70622464 70622616 3.430000e-36 163.0
9 TraesCS2A01G119600 chr2D 94.382 89 4 1 294 381 128890723 128890635 7.470000e-28 135.0
10 TraesCS2A01G119600 chr2B 85.489 1392 90 40 599 1925 106954116 106955460 0.000000e+00 1349.0
11 TraesCS2A01G119600 chr2B 81.952 1086 76 59 2347 3383 106955625 106956639 0.000000e+00 809.0
12 TraesCS2A01G119600 chr2B 84.478 670 70 9 3630 4285 106957014 106957663 7.820000e-177 630.0
13 TraesCS2A01G119600 chr2B 92.632 95 7 0 287 381 239852604 239852698 2.080000e-28 137.0
14 TraesCS2A01G119600 chr4A 81.050 438 45 25 2866 3276 739971576 739971150 8.940000e-82 315.0
15 TraesCS2A01G119600 chr4A 86.607 112 11 4 268 379 616504279 616504386 2.090000e-23 121.0
16 TraesCS2A01G119600 chr5A 94.382 89 5 0 290 378 701301606 701301694 2.080000e-28 137.0
17 TraesCS2A01G119600 chr5A 90.196 102 8 2 293 393 450750707 450750807 9.670000e-27 132.0
18 TraesCS2A01G119600 chr5D 93.333 90 6 0 291 380 6375618 6375529 2.690000e-27 134.0
19 TraesCS2A01G119600 chr5D 92.135 89 7 0 291 379 513975060 513975148 4.500000e-25 126.0
20 TraesCS2A01G119600 chr5B 81.548 168 26 5 2093 2256 659822568 659822734 2.690000e-27 134.0
21 TraesCS2A01G119600 chr5B 93.333 45 3 0 174 218 644957538 644957494 2.770000e-07 67.6
22 TraesCS2A01G119600 chr4B 93.333 90 6 0 291 380 4233514 4233603 2.690000e-27 134.0
23 TraesCS2A01G119600 chr4B 80.120 166 28 4 2102 2265 50152609 50152447 7.530000e-23 119.0
24 TraesCS2A01G119600 chr4D 90.816 98 9 0 285 382 320593828 320593731 9.670000e-27 132.0
25 TraesCS2A01G119600 chr4D 91.228 57 5 0 176 232 15437041 15436985 1.280000e-10 78.7
26 TraesCS2A01G119600 chr3B 82.237 152 22 5 2113 2263 585835304 585835157 4.500000e-25 126.0
27 TraesCS2A01G119600 chr7D 80.368 163 28 4 2095 2256 550982919 550982760 2.090000e-23 121.0
28 TraesCS2A01G119600 chr7B 87.255 102 13 0 3706 3807 692598149 692598250 2.710000e-22 117.0
29 TraesCS2A01G119600 chr7B 78.333 180 35 2 2086 2265 13322322 13322147 3.500000e-21 113.0
30 TraesCS2A01G119600 chr3D 79.641 167 26 7 2102 2265 551229491 551229330 3.500000e-21 113.0
31 TraesCS2A01G119600 chr1B 80.952 147 24 4 2102 2245 623897128 623897273 3.500000e-21 113.0
32 TraesCS2A01G119600 chrUn 78.182 165 31 4 2095 2256 33336442 33336604 2.730000e-17 100.0
33 TraesCS2A01G119600 chr1D 92.857 42 3 0 168 209 398867424 398867465 1.290000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G119600 chr2A 70101092 70105376 4284 False 7914.000000 7914 100.000000 1 4285 1 chr2A.!!$F1 4284
1 TraesCS2A01G119600 chr2D 70622195 70629614 7419 False 695.571429 1613 87.835429 12 4285 7 chr2D.!!$F1 4273
2 TraesCS2A01G119600 chr2B 106954116 106957663 3547 False 929.333333 1349 83.973000 599 4285 3 chr2B.!!$F2 3686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 588 0.041312 ATCACAGCACAACGAAACGC 60.041 50.0 0.0 0.0 0.0 4.84 F
1993 2194 0.032540 CAAAGTTGCCTTGTCCCTGC 59.967 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2418 0.034059 CTCCGTCTTGTTCCAGTGCT 59.966 55.0 0.0 0.0 0.00 4.40 R
3842 5247 0.248296 TTTTTGTGCCGACGAGCAAC 60.248 50.0 11.7 7.8 46.19 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.604604 CAACACCACGTCCCTGATTT 58.395 50.000 0.00 0.00 0.00 2.17
21 22 0.250727 ACACCACGTCCCTGATTTGG 60.251 55.000 0.00 0.00 0.00 3.28
31 32 2.175499 TCCCTGATTTGGACCATGATCC 59.825 50.000 0.00 0.00 39.45 3.36
45 46 1.521681 GATCCGAAACGAGGCAGGG 60.522 63.158 0.00 0.00 0.00 4.45
49 50 2.680913 CGAAACGAGGCAGGGCAAG 61.681 63.158 0.00 0.00 0.00 4.01
98 99 1.131638 TGTCCTCTTCTGGCACTTGT 58.868 50.000 0.00 0.00 0.00 3.16
100 101 2.037251 TGTCCTCTTCTGGCACTTGTAC 59.963 50.000 0.00 0.00 0.00 2.90
125 126 3.250220 GTGCAACCAACGTCCAAAG 57.750 52.632 0.00 0.00 0.00 2.77
126 127 0.248866 GTGCAACCAACGTCCAAAGG 60.249 55.000 0.00 0.00 0.00 3.11
127 128 0.681564 TGCAACCAACGTCCAAAGGT 60.682 50.000 0.00 0.00 35.47 3.50
140 145 3.821033 GTCCAAAGGTAGACTGTTTGCAT 59.179 43.478 0.00 0.00 31.12 3.96
148 153 6.583562 AGGTAGACTGTTTGCATTACTATCC 58.416 40.000 0.00 0.00 0.00 2.59
160 165 0.111832 TACTATCCGCATCTCCCCGT 59.888 55.000 0.00 0.00 0.00 5.28
161 166 1.179814 ACTATCCGCATCTCCCCGTC 61.180 60.000 0.00 0.00 0.00 4.79
164 169 1.749334 ATCCGCATCTCCCCGTCTTC 61.749 60.000 0.00 0.00 0.00 2.87
172 177 1.413445 TCTCCCCGTCTTCGTTTTTCA 59.587 47.619 0.00 0.00 35.01 2.69
196 201 5.931441 AACAGTGTTGCTAAATCTCAGTC 57.069 39.130 7.96 0.00 0.00 3.51
219 224 4.970611 CGACTGATACTTGGTTATGTCTCG 59.029 45.833 0.00 0.00 0.00 4.04
226 231 2.979814 TGGTTATGTCTCGGTCCATG 57.020 50.000 0.00 0.00 0.00 3.66
229 234 2.474816 GTTATGTCTCGGTCCATGCTC 58.525 52.381 0.00 0.00 0.00 4.26
232 237 1.393603 TGTCTCGGTCCATGCTCTAG 58.606 55.000 0.00 0.00 0.00 2.43
259 274 4.724074 TGGAGATCCATGCAAAATGTTC 57.276 40.909 0.00 0.00 42.01 3.18
265 280 7.818930 GGAGATCCATGCAAAATGTTCTTTTTA 59.181 33.333 0.00 0.00 35.64 1.52
266 281 8.767478 AGATCCATGCAAAATGTTCTTTTTAG 57.233 30.769 0.00 0.00 0.00 1.85
302 317 9.503399 TTCTTTTCTTTCTTATGTACTTCCTCC 57.497 33.333 0.00 0.00 0.00 4.30
303 318 7.817962 TCTTTTCTTTCTTATGTACTTCCTCCG 59.182 37.037 0.00 0.00 0.00 4.63
304 319 6.600882 TTCTTTCTTATGTACTTCCTCCGT 57.399 37.500 0.00 0.00 0.00 4.69
305 320 7.707624 TTCTTTCTTATGTACTTCCTCCGTA 57.292 36.000 0.00 0.00 0.00 4.02
306 321 7.707624 TCTTTCTTATGTACTTCCTCCGTAA 57.292 36.000 0.00 0.00 0.00 3.18
307 322 8.125978 TCTTTCTTATGTACTTCCTCCGTAAA 57.874 34.615 0.00 0.00 0.00 2.01
308 323 8.755977 TCTTTCTTATGTACTTCCTCCGTAAAT 58.244 33.333 0.00 0.00 0.00 1.40
351 366 8.164058 GATTACTAAAGTAGTGATCTATGCGC 57.836 38.462 0.00 0.00 44.10 6.09
352 367 5.776173 ACTAAAGTAGTGATCTATGCGCT 57.224 39.130 9.73 0.00 37.69 5.92
353 368 5.764131 ACTAAAGTAGTGATCTATGCGCTC 58.236 41.667 9.73 0.00 37.69 5.03
354 369 4.927978 AAAGTAGTGATCTATGCGCTCT 57.072 40.909 9.73 0.00 0.00 4.09
355 370 4.927978 AAGTAGTGATCTATGCGCTCTT 57.072 40.909 9.73 0.00 0.00 2.85
356 371 6.392625 AAAGTAGTGATCTATGCGCTCTTA 57.607 37.500 9.73 0.00 0.00 2.10
357 372 6.582677 AAGTAGTGATCTATGCGCTCTTAT 57.417 37.500 9.73 0.00 0.00 1.73
358 373 7.689446 AAGTAGTGATCTATGCGCTCTTATA 57.311 36.000 9.73 0.00 0.00 0.98
359 374 7.873719 AGTAGTGATCTATGCGCTCTTATAT 57.126 36.000 9.73 0.00 0.00 0.86
360 375 8.287439 AGTAGTGATCTATGCGCTCTTATATT 57.713 34.615 9.73 0.00 0.00 1.28
361 376 8.744652 AGTAGTGATCTATGCGCTCTTATATTT 58.255 33.333 9.73 0.00 0.00 1.40
362 377 9.015577 GTAGTGATCTATGCGCTCTTATATTTC 57.984 37.037 9.73 0.00 0.00 2.17
363 378 7.835822 AGTGATCTATGCGCTCTTATATTTCT 58.164 34.615 9.73 0.00 0.00 2.52
364 379 8.310382 AGTGATCTATGCGCTCTTATATTTCTT 58.690 33.333 9.73 0.00 0.00 2.52
365 380 8.930760 GTGATCTATGCGCTCTTATATTTCTTT 58.069 33.333 9.73 0.00 0.00 2.52
368 383 9.929180 ATCTATGCGCTCTTATATTTCTTTACA 57.071 29.630 9.73 0.00 0.00 2.41
369 384 9.411801 TCTATGCGCTCTTATATTTCTTTACAG 57.588 33.333 9.73 0.00 0.00 2.74
370 385 9.411801 CTATGCGCTCTTATATTTCTTTACAGA 57.588 33.333 9.73 0.00 0.00 3.41
371 386 7.700322 TGCGCTCTTATATTTCTTTACAGAG 57.300 36.000 9.73 0.00 0.00 3.35
372 387 6.701841 TGCGCTCTTATATTTCTTTACAGAGG 59.298 38.462 9.73 0.00 0.00 3.69
373 388 6.146347 GCGCTCTTATATTTCTTTACAGAGGG 59.854 42.308 0.00 0.00 40.81 4.30
374 389 7.434492 CGCTCTTATATTTCTTTACAGAGGGA 58.566 38.462 4.76 0.00 40.49 4.20
375 390 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
376 391 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
394 409 5.132648 AGGGAGTATTATGGCAGTTGATTGA 59.867 40.000 0.00 0.00 0.00 2.57
409 424 5.840693 AGTTGATTGAGACCCTTTTCCAAAT 59.159 36.000 0.00 0.00 0.00 2.32
427 451 2.432628 GCCAAGTGGGACGACTCG 60.433 66.667 0.00 0.00 40.01 4.18
429 453 2.338620 CAAGTGGGACGACTCGCA 59.661 61.111 0.37 0.00 37.03 5.10
431 455 0.670546 CAAGTGGGACGACTCGCATT 60.671 55.000 0.37 0.00 41.12 3.56
435 459 2.511600 GGACGACTCGCATTGGGG 60.512 66.667 0.00 0.00 0.00 4.96
446 470 1.034292 GCATTGGGGAGAAGCCAGAC 61.034 60.000 0.00 0.00 38.95 3.51
449 473 1.827399 TTGGGGAGAAGCCAGACGAC 61.827 60.000 0.00 0.00 38.95 4.34
450 474 2.579738 GGGAGAAGCCAGACGACC 59.420 66.667 0.00 0.00 38.95 4.79
454 478 2.507324 GAAGCCAGACGACCGAGC 60.507 66.667 0.00 0.00 0.00 5.03
461 485 1.601197 AGACGACCGAGCAGTGACT 60.601 57.895 0.00 0.00 0.00 3.41
500 524 1.009675 CTTGCTTCACGTGTGTGGC 60.010 57.895 16.51 15.01 46.42 5.01
528 552 2.373540 TTACACGGCGTAATCAAGCT 57.626 45.000 14.22 0.00 35.09 3.74
530 554 1.060937 CACGGCGTAATCAAGCTGC 59.939 57.895 14.22 0.00 43.12 5.25
531 555 2.106683 ACGGCGTAATCAAGCTGCC 61.107 57.895 12.58 0.00 43.12 4.85
532 556 2.823829 CGGCGTAATCAAGCTGCCC 61.824 63.158 0.00 0.00 42.76 5.36
533 557 2.709475 GCGTAATCAAGCTGCCCG 59.291 61.111 0.00 0.00 0.00 6.13
534 558 2.106683 GCGTAATCAAGCTGCCCGT 61.107 57.895 0.00 0.00 0.00 5.28
535 559 2.006772 CGTAATCAAGCTGCCCGTC 58.993 57.895 0.00 0.00 0.00 4.79
536 560 0.739462 CGTAATCAAGCTGCCCGTCA 60.739 55.000 0.00 0.00 0.00 4.35
537 561 1.668419 GTAATCAAGCTGCCCGTCAT 58.332 50.000 0.00 0.00 0.00 3.06
538 562 1.599542 GTAATCAAGCTGCCCGTCATC 59.400 52.381 0.00 0.00 0.00 2.92
539 563 0.749454 AATCAAGCTGCCCGTCATCC 60.749 55.000 0.00 0.00 0.00 3.51
540 564 1.630126 ATCAAGCTGCCCGTCATCCT 61.630 55.000 0.00 0.00 0.00 3.24
541 565 1.377725 CAAGCTGCCCGTCATCCTT 60.378 57.895 0.00 0.00 0.00 3.36
542 566 1.377725 AAGCTGCCCGTCATCCTTG 60.378 57.895 0.00 0.00 0.00 3.61
543 567 2.045926 GCTGCCCGTCATCCTTGT 60.046 61.111 0.00 0.00 0.00 3.16
544 568 2.401766 GCTGCCCGTCATCCTTGTG 61.402 63.158 0.00 0.00 0.00 3.33
546 570 0.107508 CTGCCCGTCATCCTTGTGAT 60.108 55.000 0.00 0.00 0.00 3.06
547 571 0.107703 TGCCCGTCATCCTTGTGATC 60.108 55.000 0.00 0.00 0.00 2.92
548 572 0.107703 GCCCGTCATCCTTGTGATCA 60.108 55.000 0.00 0.00 0.00 2.92
550 574 1.066215 CCCGTCATCCTTGTGATCACA 60.066 52.381 24.56 24.56 39.98 3.58
552 576 1.662629 CGTCATCCTTGTGATCACAGC 59.337 52.381 26.48 11.12 42.94 4.40
553 577 2.703416 GTCATCCTTGTGATCACAGCA 58.297 47.619 26.48 13.71 42.94 4.41
554 578 2.417933 GTCATCCTTGTGATCACAGCAC 59.582 50.000 26.48 14.49 42.94 4.40
555 579 2.038820 TCATCCTTGTGATCACAGCACA 59.961 45.455 26.48 12.64 43.89 4.57
559 583 3.677002 TGTGATCACAGCACAACGA 57.323 47.368 24.56 0.00 42.75 3.85
560 584 1.946745 TGTGATCACAGCACAACGAA 58.053 45.000 24.56 0.00 42.75 3.85
563 587 1.260297 TGATCACAGCACAACGAAACG 59.740 47.619 0.00 0.00 0.00 3.60
564 588 0.041312 ATCACAGCACAACGAAACGC 60.041 50.000 0.00 0.00 0.00 4.84
565 589 1.654137 CACAGCACAACGAAACGCC 60.654 57.895 0.00 0.00 0.00 5.68
566 590 2.109739 ACAGCACAACGAAACGCCA 61.110 52.632 0.00 0.00 0.00 5.69
567 591 1.369209 CAGCACAACGAAACGCCAG 60.369 57.895 0.00 0.00 0.00 4.85
568 592 1.522806 AGCACAACGAAACGCCAGA 60.523 52.632 0.00 0.00 0.00 3.86
589 682 2.314323 AATTTTGGCGGGCAATGATC 57.686 45.000 18.14 0.00 0.00 2.92
591 684 1.612395 TTTTGGCGGGCAATGATCCC 61.612 55.000 18.14 0.00 40.43 3.85
592 685 2.795024 TTTGGCGGGCAATGATCCCA 62.795 55.000 18.14 0.00 44.11 4.37
593 686 2.203538 GGCGGGCAATGATCCCAT 60.204 61.111 0.00 0.00 44.11 4.00
595 688 2.567497 GCGGGCAATGATCCCATGG 61.567 63.158 4.14 4.14 44.11 3.66
596 689 1.904865 CGGGCAATGATCCCATGGG 60.905 63.158 26.30 26.30 44.11 4.00
610 721 2.832778 ATGGGTCAGCCAGTGTGCA 61.833 57.895 0.11 0.00 36.17 4.57
642 753 2.185608 GAGCCAAGCGTCCTCTCC 59.814 66.667 0.00 0.00 0.00 3.71
643 754 3.708220 GAGCCAAGCGTCCTCTCCG 62.708 68.421 0.00 0.00 0.00 4.63
653 764 0.743701 GTCCTCTCCGCTGTCGACTA 60.744 60.000 17.92 2.26 38.10 2.59
654 765 0.462225 TCCTCTCCGCTGTCGACTAG 60.462 60.000 17.92 13.15 38.10 2.57
656 767 2.054140 CTCTCCGCTGTCGACTAGCC 62.054 65.000 24.53 13.14 37.90 3.93
664 782 4.753662 TCGACTAGCCCGCCCACT 62.754 66.667 0.00 0.00 0.00 4.00
690 808 2.591753 CCACACATGGCGAGGGAT 59.408 61.111 0.00 0.00 39.82 3.85
691 809 1.524621 CCACACATGGCGAGGGATC 60.525 63.158 0.00 0.00 39.82 3.36
787 911 3.470567 CCGCTCGTCGCACTTGTC 61.471 66.667 0.00 0.00 39.08 3.18
788 912 3.470567 CGCTCGTCGCACTTGTCC 61.471 66.667 0.00 0.00 39.08 4.02
806 930 1.454847 CTCCTCCTCCTCGTCCTGG 60.455 68.421 0.00 0.00 0.00 4.45
823 947 1.449601 GGGTCATTCATGGCGACGT 60.450 57.895 0.00 0.00 31.93 4.34
836 960 2.574399 GACGTGCTCCCACCTCTC 59.426 66.667 0.00 0.00 38.79 3.20
874 998 4.041762 CCACCGCCCCCTTGCTTA 62.042 66.667 0.00 0.00 0.00 3.09
875 999 2.438434 CACCGCCCCCTTGCTTAG 60.438 66.667 0.00 0.00 0.00 2.18
876 1000 2.933834 ACCGCCCCCTTGCTTAGT 60.934 61.111 0.00 0.00 0.00 2.24
921 1045 4.022464 GCATAGCGCATCCTACTACTAG 57.978 50.000 11.47 0.00 41.79 2.57
943 1076 1.068474 CTTACCAAGAAGACGGTGCG 58.932 55.000 0.00 0.00 36.69 5.34
962 1095 0.949105 GTCCGCGCCAAGAAGAAGAA 60.949 55.000 0.00 0.00 0.00 2.52
963 1096 0.670546 TCCGCGCCAAGAAGAAGAAG 60.671 55.000 0.00 0.00 0.00 2.85
964 1097 1.133458 CGCGCCAAGAAGAAGAAGC 59.867 57.895 0.00 0.00 0.00 3.86
965 1098 1.568612 CGCGCCAAGAAGAAGAAGCA 61.569 55.000 0.00 0.00 0.00 3.91
966 1099 0.167689 GCGCCAAGAAGAAGAAGCAG 59.832 55.000 0.00 0.00 0.00 4.24
967 1100 1.800805 CGCCAAGAAGAAGAAGCAGA 58.199 50.000 0.00 0.00 0.00 4.26
968 1101 2.146342 CGCCAAGAAGAAGAAGCAGAA 58.854 47.619 0.00 0.00 0.00 3.02
969 1102 2.159234 CGCCAAGAAGAAGAAGCAGAAG 59.841 50.000 0.00 0.00 0.00 2.85
970 1103 3.406764 GCCAAGAAGAAGAAGCAGAAGA 58.593 45.455 0.00 0.00 0.00 2.87
971 1104 3.817647 GCCAAGAAGAAGAAGCAGAAGAA 59.182 43.478 0.00 0.00 0.00 2.52
972 1105 4.083377 GCCAAGAAGAAGAAGCAGAAGAAG 60.083 45.833 0.00 0.00 0.00 2.85
973 1106 4.455190 CCAAGAAGAAGAAGCAGAAGAAGG 59.545 45.833 0.00 0.00 0.00 3.46
974 1107 4.972751 AGAAGAAGAAGCAGAAGAAGGT 57.027 40.909 0.00 0.00 0.00 3.50
975 1108 4.893608 AGAAGAAGAAGCAGAAGAAGGTC 58.106 43.478 0.00 0.00 0.00 3.85
976 1109 3.311486 AGAAGAAGCAGAAGAAGGTCG 57.689 47.619 0.00 0.00 0.00 4.79
977 1110 2.894126 AGAAGAAGCAGAAGAAGGTCGA 59.106 45.455 0.00 0.00 0.00 4.20
1062 1208 4.265056 GTGCCAACGGGGGAGTGT 62.265 66.667 0.00 0.00 37.87 3.55
1073 1219 0.606604 GGGGAGTGTTACTTCTGCGA 59.393 55.000 0.00 0.00 0.00 5.10
1075 1221 1.672145 GGGAGTGTTACTTCTGCGACC 60.672 57.143 0.00 0.00 0.00 4.79
1077 1223 0.038526 AGTGTTACTTCTGCGACCGG 60.039 55.000 0.00 0.00 0.00 5.28
1078 1224 0.319297 GTGTTACTTCTGCGACCGGT 60.319 55.000 6.92 6.92 0.00 5.28
1251 1397 2.185608 GCTCGGTTCCTCTGCTCC 59.814 66.667 0.00 0.00 0.00 4.70
1279 1425 2.776670 CTTCGAGGAGCAGCAGCACA 62.777 60.000 3.17 0.00 45.49 4.57
1284 1430 2.033141 GAGCAGCAGCACAGGGAA 59.967 61.111 3.17 0.00 45.49 3.97
1291 1437 2.612115 AGCACAGGGAAGGGGAGG 60.612 66.667 0.00 0.00 0.00 4.30
1293 1439 2.539081 GCACAGGGAAGGGGAGGTT 61.539 63.158 0.00 0.00 0.00 3.50
1297 1443 2.035783 GGGAAGGGGAGGTTGTGC 59.964 66.667 0.00 0.00 0.00 4.57
1302 1448 4.284550 GGGGAGGTTGTGCAGCCA 62.285 66.667 7.76 0.00 33.73 4.75
1386 1535 4.849329 GCGATCCTCGGCGTCGTT 62.849 66.667 10.18 0.00 40.84 3.85
1420 1569 3.052082 CTGAAGCGTGGTGGCCTG 61.052 66.667 3.32 0.00 0.00 4.85
1422 1571 3.050275 GAAGCGTGGTGGCCTGTC 61.050 66.667 3.32 0.00 0.00 3.51
1453 1602 1.005748 CAGGTGCTCAGCTTCGACA 60.006 57.895 0.00 0.00 36.98 4.35
1459 1608 0.939577 GCTCAGCTTCGACAACGTCA 60.940 55.000 0.00 0.00 40.69 4.35
1507 1656 3.999285 AGCCCCTCCTCACCTCGT 61.999 66.667 0.00 0.00 0.00 4.18
1508 1657 3.462678 GCCCCTCCTCACCTCGTC 61.463 72.222 0.00 0.00 0.00 4.20
1509 1658 3.141488 CCCCTCCTCACCTCGTCG 61.141 72.222 0.00 0.00 0.00 5.12
1515 1664 2.408241 CCTCACCTCGTCGTCCTCC 61.408 68.421 0.00 0.00 0.00 4.30
1543 1692 2.253452 GTTGCTGACTTGCTGGCG 59.747 61.111 0.00 0.00 0.00 5.69
1599 1765 7.063662 GGCAAAACGAAAAGGAAAAGAAAGTTA 59.936 33.333 0.00 0.00 0.00 2.24
1646 1827 2.032681 GTGCAAGAACCGGAGCCT 59.967 61.111 9.46 0.00 0.00 4.58
1749 1945 2.169789 CGTTGATCAGCTGCCTCCG 61.170 63.158 9.47 3.55 0.00 4.63
1792 1988 0.833949 TGCTATTGGGCACGGTGATA 59.166 50.000 13.29 0.00 37.29 2.15
1850 2046 3.209410 CAATCCTGCATGTACCTCCTTC 58.791 50.000 0.00 0.00 0.00 3.46
1871 2071 6.391227 TTCTCAGGTTTGGAACTTTGAATC 57.609 37.500 0.00 0.00 0.00 2.52
1888 2089 7.481798 ACTTTGAATCGAATTTTTACGCTGATC 59.518 33.333 0.00 0.00 0.00 2.92
1891 2092 5.659048 ATCGAATTTTTACGCTGATCTCC 57.341 39.130 0.00 0.00 0.00 3.71
1916 2117 6.294564 CCTTCCTGACTAGCTATATTTGCGTA 60.295 42.308 0.00 0.00 35.28 4.42
1928 2129 8.548721 AGCTATATTTGCGTAGTTTGTTGATAC 58.451 33.333 0.00 0.00 35.28 2.24
1929 2130 8.332464 GCTATATTTGCGTAGTTTGTTGATACA 58.668 33.333 0.00 0.00 0.00 2.29
1933 2134 6.411630 TTGCGTAGTTTGTTGATACATACC 57.588 37.500 0.00 0.00 37.04 2.73
1960 2161 8.256611 TCAGATTTACAGAATGCAGTAAGAAC 57.743 34.615 0.00 0.00 42.53 3.01
1982 2183 7.382218 AGAACATATGCAGTTTTACAAAGTTGC 59.618 33.333 1.58 5.88 32.88 4.17
1985 2186 4.464069 TGCAGTTTTACAAAGTTGCCTT 57.536 36.364 8.88 0.00 31.91 4.35
1986 2187 4.180057 TGCAGTTTTACAAAGTTGCCTTG 58.820 39.130 8.88 0.00 31.91 3.61
1987 2188 4.180817 GCAGTTTTACAAAGTTGCCTTGT 58.819 39.130 0.00 0.00 0.00 3.16
1989 2190 4.803613 CAGTTTTACAAAGTTGCCTTGTCC 59.196 41.667 0.00 0.00 0.00 4.02
1993 2194 0.032540 CAAAGTTGCCTTGTCCCTGC 59.967 55.000 0.00 0.00 0.00 4.85
1994 2195 0.396974 AAAGTTGCCTTGTCCCTGCA 60.397 50.000 0.00 0.00 0.00 4.41
2003 2204 4.961730 TGCCTTGTCCCTGCAAAATTATAT 59.038 37.500 0.00 0.00 30.85 0.86
2004 2205 5.163426 TGCCTTGTCCCTGCAAAATTATATG 60.163 40.000 0.00 0.00 30.85 1.78
2007 2208 7.687592 GCCTTGTCCCTGCAAAATTATATGAAT 60.688 37.037 0.00 0.00 0.00 2.57
2008 2209 8.206189 CCTTGTCCCTGCAAAATTATATGAATT 58.794 33.333 0.00 0.00 0.00 2.17
2015 2216 8.428063 CCTGCAAAATTATATGAATTAACCCCA 58.572 33.333 0.00 0.00 0.00 4.96
2044 2253 3.578282 TGCAACCATAGACTGAACTCTGA 59.422 43.478 0.00 0.00 0.00 3.27
2050 2259 6.773638 ACCATAGACTGAACTCTGAATTTGT 58.226 36.000 0.00 0.00 0.00 2.83
2051 2260 6.652481 ACCATAGACTGAACTCTGAATTTGTG 59.348 38.462 0.00 0.00 0.00 3.33
2052 2261 6.875726 CCATAGACTGAACTCTGAATTTGTGA 59.124 38.462 0.00 0.00 0.00 3.58
2053 2262 7.388776 CCATAGACTGAACTCTGAATTTGTGAA 59.611 37.037 0.00 0.00 0.00 3.18
2054 2263 6.610741 AGACTGAACTCTGAATTTGTGAAC 57.389 37.500 0.00 0.00 0.00 3.18
2055 2264 5.529060 AGACTGAACTCTGAATTTGTGAACC 59.471 40.000 0.00 0.00 0.00 3.62
2056 2265 5.192927 ACTGAACTCTGAATTTGTGAACCA 58.807 37.500 0.00 0.00 0.00 3.67
2057 2266 5.297776 ACTGAACTCTGAATTTGTGAACCAG 59.702 40.000 0.00 0.00 0.00 4.00
2058 2267 5.436175 TGAACTCTGAATTTGTGAACCAGA 58.564 37.500 0.00 0.00 33.43 3.86
2059 2268 5.296780 TGAACTCTGAATTTGTGAACCAGAC 59.703 40.000 0.00 0.00 31.45 3.51
2060 2269 4.137543 ACTCTGAATTTGTGAACCAGACC 58.862 43.478 0.00 0.00 31.45 3.85
2061 2270 3.138304 TCTGAATTTGTGAACCAGACCG 58.862 45.455 0.00 0.00 0.00 4.79
2062 2271 3.138304 CTGAATTTGTGAACCAGACCGA 58.862 45.455 0.00 0.00 0.00 4.69
2063 2272 3.750371 TGAATTTGTGAACCAGACCGAT 58.250 40.909 0.00 0.00 0.00 4.18
2064 2273 3.751175 TGAATTTGTGAACCAGACCGATC 59.249 43.478 0.00 0.00 0.00 3.69
2065 2274 2.178912 TTTGTGAACCAGACCGATCC 57.821 50.000 0.00 0.00 0.00 3.36
2066 2275 1.052617 TTGTGAACCAGACCGATCCA 58.947 50.000 0.00 0.00 0.00 3.41
2067 2276 1.275666 TGTGAACCAGACCGATCCAT 58.724 50.000 0.00 0.00 0.00 3.41
2068 2277 1.207089 TGTGAACCAGACCGATCCATC 59.793 52.381 0.00 0.00 0.00 3.51
2088 2297 3.067106 TCGAGAACTCACAAGCCATTTC 58.933 45.455 2.78 0.00 0.00 2.17
2092 2301 4.218312 AGAACTCACAAGCCATTTCCTTT 58.782 39.130 0.00 0.00 0.00 3.11
2093 2302 4.651045 AGAACTCACAAGCCATTTCCTTTT 59.349 37.500 0.00 0.00 0.00 2.27
2094 2303 4.590850 ACTCACAAGCCATTTCCTTTTC 57.409 40.909 0.00 0.00 0.00 2.29
2095 2304 4.218312 ACTCACAAGCCATTTCCTTTTCT 58.782 39.130 0.00 0.00 0.00 2.52
2096 2305 4.651045 ACTCACAAGCCATTTCCTTTTCTT 59.349 37.500 0.00 0.00 0.00 2.52
2097 2306 5.129320 ACTCACAAGCCATTTCCTTTTCTTT 59.871 36.000 0.00 0.00 0.00 2.52
2098 2307 5.988287 TCACAAGCCATTTCCTTTTCTTTT 58.012 33.333 0.00 0.00 0.00 2.27
2099 2308 6.048509 TCACAAGCCATTTCCTTTTCTTTTC 58.951 36.000 0.00 0.00 0.00 2.29
2100 2309 5.237127 CACAAGCCATTTCCTTTTCTTTTCC 59.763 40.000 0.00 0.00 0.00 3.13
2101 2310 5.130975 ACAAGCCATTTCCTTTTCTTTTCCT 59.869 36.000 0.00 0.00 0.00 3.36
2102 2311 5.894298 AGCCATTTCCTTTTCTTTTCCTT 57.106 34.783 0.00 0.00 0.00 3.36
2103 2312 6.252599 AGCCATTTCCTTTTCTTTTCCTTT 57.747 33.333 0.00 0.00 0.00 3.11
2104 2313 6.662755 AGCCATTTCCTTTTCTTTTCCTTTT 58.337 32.000 0.00 0.00 0.00 2.27
2105 2314 7.118723 AGCCATTTCCTTTTCTTTTCCTTTTT 58.881 30.769 0.00 0.00 0.00 1.94
2106 2315 7.067372 AGCCATTTCCTTTTCTTTTCCTTTTTG 59.933 33.333 0.00 0.00 0.00 2.44
2108 2317 6.415798 TTTCCTTTTCTTTTCCTTTTTGCG 57.584 33.333 0.00 0.00 0.00 4.85
2109 2318 4.438148 TCCTTTTCTTTTCCTTTTTGCGG 58.562 39.130 0.00 0.00 0.00 5.69
2111 2320 4.438148 CTTTTCTTTTCCTTTTTGCGGGA 58.562 39.130 0.00 0.00 0.00 5.14
2113 2322 4.473477 TTCTTTTCCTTTTTGCGGGAAA 57.527 36.364 3.42 3.42 46.06 3.13
2117 2326 3.897141 TTCCTTTTTGCGGGAAAAACT 57.103 38.095 14.93 0.00 38.38 2.66
2119 2328 4.209307 TCCTTTTTGCGGGAAAAACTTT 57.791 36.364 14.93 0.00 38.38 2.66
2120 2329 4.185394 TCCTTTTTGCGGGAAAAACTTTC 58.815 39.130 14.93 0.00 38.38 2.62
2121 2330 3.935828 CCTTTTTGCGGGAAAAACTTTCA 59.064 39.130 14.93 0.00 38.38 2.69
2122 2331 4.033932 CCTTTTTGCGGGAAAAACTTTCAG 59.966 41.667 14.93 5.65 38.38 3.02
2123 2332 3.878160 TTTGCGGGAAAAACTTTCAGT 57.122 38.095 0.00 0.00 0.00 3.41
2124 2333 3.430333 TTGCGGGAAAAACTTTCAGTC 57.570 42.857 1.88 0.00 0.00 3.51
2125 2334 2.650322 TGCGGGAAAAACTTTCAGTCT 58.350 42.857 1.88 0.00 0.00 3.24
2126 2335 3.811083 TGCGGGAAAAACTTTCAGTCTA 58.189 40.909 1.88 0.00 0.00 2.59
2127 2336 4.394729 TGCGGGAAAAACTTTCAGTCTAT 58.605 39.130 1.88 0.00 0.00 1.98
2128 2337 4.825085 TGCGGGAAAAACTTTCAGTCTATT 59.175 37.500 1.88 0.00 0.00 1.73
2129 2338 5.048991 TGCGGGAAAAACTTTCAGTCTATTC 60.049 40.000 1.88 0.00 0.00 1.75
2130 2339 5.048991 GCGGGAAAAACTTTCAGTCTATTCA 60.049 40.000 1.88 0.00 0.00 2.57
2131 2340 6.349363 GCGGGAAAAACTTTCAGTCTATTCAT 60.349 38.462 1.88 0.00 0.00 2.57
2132 2341 7.244192 CGGGAAAAACTTTCAGTCTATTCATC 58.756 38.462 1.88 0.00 0.00 2.92
2133 2342 7.094805 CGGGAAAAACTTTCAGTCTATTCATCA 60.095 37.037 1.88 0.00 0.00 3.07
2134 2343 8.576442 GGGAAAAACTTTCAGTCTATTCATCAA 58.424 33.333 1.88 0.00 0.00 2.57
2135 2344 9.965824 GGAAAAACTTTCAGTCTATTCATCAAA 57.034 29.630 1.88 0.00 0.00 2.69
2140 2349 8.853077 ACTTTCAGTCTATTCATCAAATGTCA 57.147 30.769 0.00 0.00 0.00 3.58
2141 2350 9.288576 ACTTTCAGTCTATTCATCAAATGTCAA 57.711 29.630 0.00 0.00 0.00 3.18
2142 2351 9.770503 CTTTCAGTCTATTCATCAAATGTCAAG 57.229 33.333 0.00 0.00 0.00 3.02
2143 2352 7.854557 TCAGTCTATTCATCAAATGTCAAGG 57.145 36.000 0.00 0.00 0.00 3.61
2144 2353 7.397221 TCAGTCTATTCATCAAATGTCAAGGT 58.603 34.615 0.00 0.00 0.00 3.50
2145 2354 8.539544 TCAGTCTATTCATCAAATGTCAAGGTA 58.460 33.333 0.00 0.00 0.00 3.08
2146 2355 9.166173 CAGTCTATTCATCAAATGTCAAGGTAA 57.834 33.333 0.00 0.00 0.00 2.85
2147 2356 9.911788 AGTCTATTCATCAAATGTCAAGGTAAT 57.088 29.630 0.00 0.00 0.00 1.89
2192 2401 8.877864 AAAATTACATTCAGGTTCATAGACCA 57.122 30.769 0.00 0.00 42.35 4.02
2193 2402 7.865706 AATTACATTCAGGTTCATAGACCAC 57.134 36.000 0.00 0.00 42.35 4.16
2194 2403 4.222124 ACATTCAGGTTCATAGACCACC 57.778 45.455 0.00 0.00 42.35 4.61
2195 2404 3.846588 ACATTCAGGTTCATAGACCACCT 59.153 43.478 0.00 0.00 41.97 4.00
2196 2405 5.030147 ACATTCAGGTTCATAGACCACCTA 58.970 41.667 0.00 0.00 39.01 3.08
2197 2406 5.487488 ACATTCAGGTTCATAGACCACCTAA 59.513 40.000 0.00 0.00 39.01 2.69
2198 2407 5.416271 TTCAGGTTCATAGACCACCTAAC 57.584 43.478 0.00 0.00 39.01 2.34
2199 2408 4.422057 TCAGGTTCATAGACCACCTAACA 58.578 43.478 0.00 0.00 39.01 2.41
2200 2409 4.841813 TCAGGTTCATAGACCACCTAACAA 59.158 41.667 0.00 0.00 39.01 2.83
2201 2410 4.935808 CAGGTTCATAGACCACCTAACAAC 59.064 45.833 0.00 0.00 39.01 3.32
2202 2411 3.930848 GGTTCATAGACCACCTAACAACG 59.069 47.826 0.00 0.00 39.57 4.10
2203 2412 4.322198 GGTTCATAGACCACCTAACAACGA 60.322 45.833 0.00 0.00 39.57 3.85
2204 2413 4.445452 TCATAGACCACCTAACAACGAC 57.555 45.455 0.00 0.00 0.00 4.34
2205 2414 4.084287 TCATAGACCACCTAACAACGACT 58.916 43.478 0.00 0.00 0.00 4.18
2206 2415 5.255687 TCATAGACCACCTAACAACGACTA 58.744 41.667 0.00 0.00 0.00 2.59
2207 2416 3.930634 AGACCACCTAACAACGACTAC 57.069 47.619 0.00 0.00 0.00 2.73
2208 2417 3.225104 AGACCACCTAACAACGACTACA 58.775 45.455 0.00 0.00 0.00 2.74
2209 2418 3.638160 AGACCACCTAACAACGACTACAA 59.362 43.478 0.00 0.00 0.00 2.41
2210 2419 3.985925 GACCACCTAACAACGACTACAAG 59.014 47.826 0.00 0.00 0.00 3.16
2211 2420 2.735134 CCACCTAACAACGACTACAAGC 59.265 50.000 0.00 0.00 0.00 4.01
2212 2421 3.386486 CACCTAACAACGACTACAAGCA 58.614 45.455 0.00 0.00 0.00 3.91
2213 2422 3.183775 CACCTAACAACGACTACAAGCAC 59.816 47.826 0.00 0.00 0.00 4.40
2214 2423 3.069158 ACCTAACAACGACTACAAGCACT 59.931 43.478 0.00 0.00 0.00 4.40
2215 2424 3.428870 CCTAACAACGACTACAAGCACTG 59.571 47.826 0.00 0.00 0.00 3.66
2216 2425 1.865865 ACAACGACTACAAGCACTGG 58.134 50.000 0.00 0.00 0.00 4.00
2217 2426 1.411246 ACAACGACTACAAGCACTGGA 59.589 47.619 0.00 0.00 0.00 3.86
2218 2427 2.159014 ACAACGACTACAAGCACTGGAA 60.159 45.455 0.00 0.00 0.00 3.53
2219 2428 2.150397 ACGACTACAAGCACTGGAAC 57.850 50.000 0.00 0.00 0.00 3.62
2220 2429 1.411246 ACGACTACAAGCACTGGAACA 59.589 47.619 0.00 0.00 0.00 3.18
2221 2430 2.159014 ACGACTACAAGCACTGGAACAA 60.159 45.455 0.00 0.00 38.70 2.83
2222 2431 2.476619 CGACTACAAGCACTGGAACAAG 59.523 50.000 0.00 0.00 38.70 3.16
2223 2432 3.728845 GACTACAAGCACTGGAACAAGA 58.271 45.455 0.00 0.00 38.70 3.02
2224 2433 3.467803 ACTACAAGCACTGGAACAAGAC 58.532 45.455 0.00 0.00 38.70 3.01
2225 2434 1.299541 ACAAGCACTGGAACAAGACG 58.700 50.000 0.00 0.00 38.70 4.18
2226 2435 0.588252 CAAGCACTGGAACAAGACGG 59.412 55.000 0.00 0.00 38.70 4.79
2227 2436 0.468226 AAGCACTGGAACAAGACGGA 59.532 50.000 0.00 0.00 38.70 4.69
2228 2437 0.034059 AGCACTGGAACAAGACGGAG 59.966 55.000 0.00 0.00 38.70 4.63
2229 2438 0.951040 GCACTGGAACAAGACGGAGG 60.951 60.000 0.00 0.00 38.70 4.30
2230 2439 0.951040 CACTGGAACAAGACGGAGGC 60.951 60.000 0.00 0.00 38.70 4.70
2231 2440 1.371183 CTGGAACAAGACGGAGGCA 59.629 57.895 0.00 0.00 38.70 4.75
2232 2441 0.250295 CTGGAACAAGACGGAGGCAA 60.250 55.000 0.00 0.00 38.70 4.52
2233 2442 0.250295 TGGAACAAGACGGAGGCAAG 60.250 55.000 0.00 0.00 31.92 4.01
2234 2443 1.578206 GGAACAAGACGGAGGCAAGC 61.578 60.000 0.00 0.00 0.00 4.01
2235 2444 1.578206 GAACAAGACGGAGGCAAGCC 61.578 60.000 2.02 2.02 0.00 4.35
2255 2464 3.917760 CGTCATCGGCCCTCCCTC 61.918 72.222 0.00 0.00 0.00 4.30
2256 2465 2.764128 GTCATCGGCCCTCCCTCA 60.764 66.667 0.00 0.00 0.00 3.86
2257 2466 2.143419 GTCATCGGCCCTCCCTCAT 61.143 63.158 0.00 0.00 0.00 2.90
2258 2467 2.142761 TCATCGGCCCTCCCTCATG 61.143 63.158 0.00 0.00 0.00 3.07
2259 2468 2.851102 ATCGGCCCTCCCTCATGG 60.851 66.667 0.00 0.00 0.00 3.66
2274 2483 1.153061 ATGGGAGCCATGCATCCAG 59.847 57.895 14.37 0.00 43.39 3.86
2286 2495 5.353938 CCATGCATCCAGAAAAATTACCAG 58.646 41.667 0.00 0.00 0.00 4.00
2290 2499 5.046448 TGCATCCAGAAAAATTACCAGCATT 60.046 36.000 0.00 0.00 0.00 3.56
2291 2500 5.292589 GCATCCAGAAAAATTACCAGCATTG 59.707 40.000 0.00 0.00 0.00 2.82
2292 2501 6.400568 CATCCAGAAAAATTACCAGCATTGT 58.599 36.000 0.00 0.00 0.00 2.71
2305 2527 5.865085 ACCAGCATTGTTAGTTCTAACTCA 58.135 37.500 19.12 9.67 40.37 3.41
2308 2530 8.267894 ACCAGCATTGTTAGTTCTAACTCATAT 58.732 33.333 19.12 8.39 40.37 1.78
2330 2553 1.933021 ATATGGGATGGCAAGGCATG 58.067 50.000 14.18 0.00 0.00 4.06
2463 2774 2.278026 TCAGATCGACAATGACACGG 57.722 50.000 0.00 0.00 0.00 4.94
2472 2794 3.906008 CGACAATGACACGGTGATTTTTC 59.094 43.478 16.29 1.78 0.00 2.29
2481 2803 1.665735 CGGTGATTTTTCCGGTTGCAG 60.666 52.381 0.00 0.00 42.61 4.41
2508 2830 8.646004 CCGCCTAGTATATATACTCCTGTAGTA 58.354 40.741 25.29 7.85 44.76 1.82
2509 2831 9.695526 CGCCTAGTATATATACTCCTGTAGTAG 57.304 40.741 25.29 15.44 43.90 2.57
2522 2844 5.987098 TCCTGTAGTAGTACTAGTCACAGG 58.013 45.833 31.57 31.57 40.13 4.00
2525 2847 5.426504 TGTAGTAGTACTAGTCACAGGCTC 58.573 45.833 13.60 0.00 30.12 4.70
2527 2849 4.263435 AGTAGTACTAGTCACAGGCTCAC 58.737 47.826 1.87 0.00 0.00 3.51
2542 2864 3.892918 GCTCACAGCCATCATTATGAC 57.107 47.619 0.00 0.00 34.48 3.06
2549 2871 7.225725 TCACAGCCATCATTATGACATTGATA 58.774 34.615 0.00 0.00 34.84 2.15
2550 2872 7.886446 TCACAGCCATCATTATGACATTGATAT 59.114 33.333 0.00 0.00 34.84 1.63
2551 2873 8.182227 CACAGCCATCATTATGACATTGATATC 58.818 37.037 0.00 0.00 34.84 1.63
2553 2875 8.398665 CAGCCATCATTATGACATTGATATCTG 58.601 37.037 3.98 8.43 34.84 2.90
2554 2876 8.107729 AGCCATCATTATGACATTGATATCTGT 58.892 33.333 3.98 0.50 34.84 3.41
2555 2877 8.737175 GCCATCATTATGACATTGATATCTGTT 58.263 33.333 3.98 0.00 34.84 3.16
2606 2928 7.913674 AATAGGATCTTGATATTTCTTCGGC 57.086 36.000 0.00 0.00 0.00 5.54
2607 2929 5.296151 AGGATCTTGATATTTCTTCGGCA 57.704 39.130 0.00 0.00 0.00 5.69
2615 2937 1.923356 ATTTCTTCGGCACCACCAAT 58.077 45.000 0.00 0.00 39.03 3.16
2643 2965 2.287970 CCCTTTCGGTACAAAGCCAAAC 60.288 50.000 0.00 0.00 32.75 2.93
2644 2966 2.603652 CCTTTCGGTACAAAGCCAAACG 60.604 50.000 0.00 0.00 32.75 3.60
2646 2968 2.522836 TCGGTACAAAGCCAAACGTA 57.477 45.000 0.00 0.00 0.00 3.57
2649 2971 2.134346 GGTACAAAGCCAAACGTACGA 58.866 47.619 24.41 0.00 36.02 3.43
2651 2973 1.223187 ACAAAGCCAAACGTACGAGG 58.777 50.000 24.41 20.16 0.00 4.63
2654 2976 2.858158 GCCAAACGTACGAGGCAC 59.142 61.111 30.94 13.83 46.26 5.01
2656 2978 1.005394 CCAAACGTACGAGGCACCT 60.005 57.895 24.41 0.00 0.00 4.00
2725 3149 5.643777 AGTAGATGTTTTCCAGGAACATTCG 59.356 40.000 0.00 0.00 45.11 3.34
2738 3162 0.529337 ACATTCGATCGAGCTGCCAG 60.529 55.000 18.54 6.88 0.00 4.85
2739 3163 1.593750 ATTCGATCGAGCTGCCAGC 60.594 57.895 18.54 9.13 42.84 4.85
2943 3370 2.504899 CAGCAGCGTCGACGACAT 60.505 61.111 39.74 22.01 43.02 3.06
2944 3371 2.504899 AGCAGCGTCGACGACATG 60.505 61.111 39.74 31.01 43.02 3.21
2952 3379 3.487202 CGACGACATGGCCAACGG 61.487 66.667 25.62 15.52 0.00 4.44
3122 3558 5.438761 CAGGATGTACGTGAGATGTATCA 57.561 43.478 0.00 0.00 36.62 2.15
3123 3559 5.456265 CAGGATGTACGTGAGATGTATCAG 58.544 45.833 0.00 0.00 36.62 2.90
3125 3561 5.471797 AGGATGTACGTGAGATGTATCAGAG 59.528 44.000 0.00 0.00 0.00 3.35
3126 3562 5.470437 GGATGTACGTGAGATGTATCAGAGA 59.530 44.000 0.00 0.00 0.00 3.10
3128 3564 6.753107 TGTACGTGAGATGTATCAGAGAAA 57.247 37.500 0.00 0.00 0.00 2.52
3129 3565 7.334844 TGTACGTGAGATGTATCAGAGAAAT 57.665 36.000 0.00 0.00 0.00 2.17
3131 3567 5.046529 ACGTGAGATGTATCAGAGAAATGC 58.953 41.667 0.00 0.00 0.00 3.56
3134 3570 4.202398 TGAGATGTATCAGAGAAATGCCCC 60.202 45.833 0.00 0.00 0.00 5.80
3135 3571 2.620251 TGTATCAGAGAAATGCCCCG 57.380 50.000 0.00 0.00 0.00 5.73
3136 3572 1.230324 GTATCAGAGAAATGCCCCGC 58.770 55.000 0.00 0.00 0.00 6.13
3138 3574 1.925285 ATCAGAGAAATGCCCCGCCA 61.925 55.000 0.00 0.00 0.00 5.69
3140 3576 2.361104 GAGAAATGCCCCGCCACA 60.361 61.111 0.00 0.00 0.00 4.17
3143 3579 2.283821 AAATGCCCCGCCACACAT 60.284 55.556 0.00 0.00 0.00 3.21
3148 3584 2.747460 CCCCGCCACACATCACAG 60.747 66.667 0.00 0.00 0.00 3.66
3149 3585 2.347114 CCCGCCACACATCACAGA 59.653 61.111 0.00 0.00 0.00 3.41
3150 3586 1.078214 CCCGCCACACATCACAGAT 60.078 57.895 0.00 0.00 0.00 2.90
3151 3587 0.677731 CCCGCCACACATCACAGATT 60.678 55.000 0.00 0.00 0.00 2.40
3152 3588 1.167851 CCGCCACACATCACAGATTT 58.832 50.000 0.00 0.00 0.00 2.17
3153 3589 1.541147 CCGCCACACATCACAGATTTT 59.459 47.619 0.00 0.00 0.00 1.82
3154 3590 2.030007 CCGCCACACATCACAGATTTTT 60.030 45.455 0.00 0.00 0.00 1.94
3155 3591 2.981805 CGCCACACATCACAGATTTTTG 59.018 45.455 0.00 0.00 0.00 2.44
3156 3592 3.319755 GCCACACATCACAGATTTTTGG 58.680 45.455 0.00 0.00 0.00 3.28
3159 3595 5.508825 GCCACACATCACAGATTTTTGGTTA 60.509 40.000 0.00 0.00 0.00 2.85
3160 3596 6.151691 CCACACATCACAGATTTTTGGTTAG 58.848 40.000 0.00 0.00 0.00 2.34
3161 3597 5.630680 CACACATCACAGATTTTTGGTTAGC 59.369 40.000 0.00 0.00 0.00 3.09
3253 3701 4.436998 CGACGGCAGGGTGAGGAC 62.437 72.222 0.00 0.00 0.00 3.85
3284 3736 1.080093 CGCCAAGTCGAGCCAGTAA 60.080 57.895 0.00 0.00 0.00 2.24
3400 3864 2.413142 GCCATGGCAGCTTGTCCTC 61.413 63.158 32.08 0.00 41.49 3.71
3418 3883 1.214325 CTGGTCGTACGTGCCATCA 59.786 57.895 25.56 10.28 0.00 3.07
3456 3921 3.359272 CGTCTCAACGTGATGTGATTG 57.641 47.619 0.00 0.00 43.94 2.67
3477 3942 2.458592 GCGAGCTGCGATATGTTTTT 57.541 45.000 9.32 0.00 44.57 1.94
3500 3965 3.651803 TTTTTGGCGTTATGGTTCAGG 57.348 42.857 0.00 0.00 0.00 3.86
3501 3966 2.279935 TTTGGCGTTATGGTTCAGGT 57.720 45.000 0.00 0.00 0.00 4.00
3502 3967 1.529226 TTGGCGTTATGGTTCAGGTG 58.471 50.000 0.00 0.00 0.00 4.00
3503 3968 0.398696 TGGCGTTATGGTTCAGGTGT 59.601 50.000 0.00 0.00 0.00 4.16
3504 3969 0.802494 GGCGTTATGGTTCAGGTGTG 59.198 55.000 0.00 0.00 0.00 3.82
3505 3970 1.609580 GGCGTTATGGTTCAGGTGTGA 60.610 52.381 0.00 0.00 0.00 3.58
3506 3971 2.356135 GCGTTATGGTTCAGGTGTGAT 58.644 47.619 0.00 0.00 30.85 3.06
3507 3972 2.747446 GCGTTATGGTTCAGGTGTGATT 59.253 45.455 0.00 0.00 30.85 2.57
3508 3973 3.190535 GCGTTATGGTTCAGGTGTGATTT 59.809 43.478 0.00 0.00 30.85 2.17
3509 3974 4.320935 GCGTTATGGTTCAGGTGTGATTTT 60.321 41.667 0.00 0.00 30.85 1.82
3510 3975 5.768317 CGTTATGGTTCAGGTGTGATTTTT 58.232 37.500 0.00 0.00 30.85 1.94
3555 4283 7.553881 TCAGTTACTCTTCCTTCTTTTGTTG 57.446 36.000 0.00 0.00 0.00 3.33
3559 4287 3.225940 CTCTTCCTTCTTTTGTTGCCCT 58.774 45.455 0.00 0.00 0.00 5.19
3627 4357 5.585820 TTGATGATGGTGAATTGGTGATG 57.414 39.130 0.00 0.00 0.00 3.07
3628 4358 3.382227 TGATGATGGTGAATTGGTGATGC 59.618 43.478 0.00 0.00 0.00 3.91
3670 5075 1.660355 GGCGCCTCATAGTCGATGA 59.340 57.895 22.15 0.00 42.55 2.92
3679 5084 6.238211 CGCCTCATAGTCGATGAAAATTTCTT 60.238 38.462 7.29 0.31 44.14 2.52
3687 5092 4.700213 TCGATGAAAATTTCTTCTCCCACC 59.300 41.667 16.21 0.00 33.15 4.61
3692 5097 4.367039 AAATTTCTTCTCCCACCGAAGA 57.633 40.909 0.00 0.00 43.61 2.87
3703 5108 2.621055 CCCACCGAAGAAACATTGACAA 59.379 45.455 0.00 0.00 0.00 3.18
3743 5148 4.803098 AGGAAAATGCGACTACTAGTGT 57.197 40.909 5.39 1.39 0.00 3.55
3795 5200 6.590656 TGGTTCCACCATAAGGAATCTAAT 57.409 37.500 6.75 0.00 44.79 1.73
3842 5247 0.023732 CGATTACACTCTTGCGCACG 59.976 55.000 11.12 9.20 0.00 5.34
3865 5270 2.486203 TGCTCGTCGGCACAAAAATAAT 59.514 40.909 4.55 0.00 37.29 1.28
3876 5281 7.116090 TCGGCACAAAAATAATCAGATTGTTTG 59.884 33.333 16.23 17.46 34.46 2.93
3877 5282 7.116090 CGGCACAAAAATAATCAGATTGTTTGA 59.884 33.333 22.89 1.75 34.46 2.69
3938 5343 7.749570 TCGAAAACACATAAAAACGAAAACAGA 59.250 29.630 0.00 0.00 0.00 3.41
3998 5403 1.003118 TGGGCGACATAGAGCTTGTTT 59.997 47.619 0.00 0.00 0.00 2.83
4001 5406 1.398390 GCGACATAGAGCTTGTTTGGG 59.602 52.381 0.00 0.00 0.00 4.12
4002 5407 2.699954 CGACATAGAGCTTGTTTGGGT 58.300 47.619 0.00 0.00 0.00 4.51
4003 5408 3.074412 CGACATAGAGCTTGTTTGGGTT 58.926 45.455 0.00 0.00 0.00 4.11
4083 5502 4.336433 AGTCCAAAACAAGACACATCACAG 59.664 41.667 0.00 0.00 35.38 3.66
4141 5561 5.705441 TCACCAACAGTCAGAAATATCAACC 59.295 40.000 0.00 0.00 0.00 3.77
4216 5636 7.961325 ATAACCATGGTAAAGCTTTTGTTTG 57.039 32.000 20.12 10.39 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.266718 CAAATCAGGGACGTGGTGTTG 59.733 52.381 0.00 0.00 0.00 3.33
1 2 1.604604 CAAATCAGGGACGTGGTGTT 58.395 50.000 0.00 0.00 0.00 3.32
2 3 0.250727 CCAAATCAGGGACGTGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
3 4 0.036164 TCCAAATCAGGGACGTGGTG 59.964 55.000 0.00 0.00 0.00 4.17
4 5 0.036306 GTCCAAATCAGGGACGTGGT 59.964 55.000 0.00 0.00 44.80 4.16
5 6 2.854522 GTCCAAATCAGGGACGTGG 58.145 57.895 0.00 0.00 44.80 4.94
10 11 2.175499 GGATCATGGTCCAAATCAGGGA 59.825 50.000 20.69 0.00 38.20 4.20
14 15 3.643199 TTCGGATCATGGTCCAAATCA 57.357 42.857 24.71 0.28 38.21 2.57
19 20 0.899019 TCGTTTCGGATCATGGTCCA 59.101 50.000 24.71 9.26 38.21 4.02
21 22 1.571919 CCTCGTTTCGGATCATGGTC 58.428 55.000 0.00 0.00 0.00 4.02
31 32 2.668212 TTGCCCTGCCTCGTTTCG 60.668 61.111 0.00 0.00 0.00 3.46
45 46 1.153469 CCTCCTTCTCCGAGCTTGC 60.153 63.158 0.00 0.00 0.00 4.01
49 50 1.380650 ACCTCCTCCTTCTCCGAGC 60.381 63.158 0.00 0.00 0.00 5.03
108 109 0.681564 ACCTTTGGACGTTGGTTGCA 60.682 50.000 0.00 0.00 0.00 4.08
114 115 3.107642 ACAGTCTACCTTTGGACGTTG 57.892 47.619 0.00 0.00 37.52 4.10
115 116 3.832615 AACAGTCTACCTTTGGACGTT 57.167 42.857 0.00 0.00 37.52 3.99
116 117 3.463944 CAAACAGTCTACCTTTGGACGT 58.536 45.455 0.00 0.00 37.52 4.34
125 126 5.462398 CGGATAGTAATGCAAACAGTCTACC 59.538 44.000 0.00 0.00 0.00 3.18
126 127 5.050972 GCGGATAGTAATGCAAACAGTCTAC 60.051 44.000 0.00 0.00 0.00 2.59
127 128 5.047847 GCGGATAGTAATGCAAACAGTCTA 58.952 41.667 0.00 0.00 0.00 2.59
140 145 1.254026 CGGGGAGATGCGGATAGTAA 58.746 55.000 0.00 0.00 0.00 2.24
148 153 2.278857 CGAAGACGGGGAGATGCG 60.279 66.667 0.00 0.00 35.72 4.73
172 177 6.511767 CGACTGAGATTTAGCAACACTGTTTT 60.512 38.462 0.00 0.00 0.00 2.43
196 201 4.970611 CGAGACATAACCAAGTATCAGTCG 59.029 45.833 0.00 0.00 0.00 4.18
203 208 3.433343 TGGACCGAGACATAACCAAGTA 58.567 45.455 0.00 0.00 0.00 2.24
206 211 2.679639 GCATGGACCGAGACATAACCAA 60.680 50.000 0.00 0.00 0.00 3.67
207 212 1.134521 GCATGGACCGAGACATAACCA 60.135 52.381 0.00 0.00 0.00 3.67
208 213 1.139058 AGCATGGACCGAGACATAACC 59.861 52.381 0.00 0.00 0.00 2.85
209 214 2.101582 AGAGCATGGACCGAGACATAAC 59.898 50.000 0.00 0.00 0.00 1.89
210 215 2.388735 AGAGCATGGACCGAGACATAA 58.611 47.619 0.00 0.00 0.00 1.90
211 216 2.073252 AGAGCATGGACCGAGACATA 57.927 50.000 0.00 0.00 0.00 2.29
212 217 1.959985 CTAGAGCATGGACCGAGACAT 59.040 52.381 0.00 0.00 0.00 3.06
213 218 1.341089 ACTAGAGCATGGACCGAGACA 60.341 52.381 0.00 0.00 0.00 3.41
219 224 3.861341 TGCAACTAGAGCATGGACC 57.139 52.632 9.91 0.00 37.02 4.46
226 231 2.103771 TGGATCTCCATGCAACTAGAGC 59.896 50.000 0.00 0.22 42.01 4.09
276 291 9.503399 GGAGGAAGTACATAAGAAAGAAAAGAA 57.497 33.333 0.00 0.00 0.00 2.52
277 292 7.817962 CGGAGGAAGTACATAAGAAAGAAAAGA 59.182 37.037 0.00 0.00 0.00 2.52
278 293 7.603024 ACGGAGGAAGTACATAAGAAAGAAAAG 59.397 37.037 0.00 0.00 0.00 2.27
279 294 7.447594 ACGGAGGAAGTACATAAGAAAGAAAA 58.552 34.615 0.00 0.00 0.00 2.29
280 295 7.001099 ACGGAGGAAGTACATAAGAAAGAAA 57.999 36.000 0.00 0.00 0.00 2.52
281 296 6.600882 ACGGAGGAAGTACATAAGAAAGAA 57.399 37.500 0.00 0.00 0.00 2.52
282 297 7.707624 TTACGGAGGAAGTACATAAGAAAGA 57.292 36.000 0.00 0.00 0.00 2.52
283 298 8.943909 ATTTACGGAGGAAGTACATAAGAAAG 57.056 34.615 0.00 0.00 0.00 2.62
325 340 8.024285 GCGCATAGATCACTACTTTAGTAATCT 58.976 37.037 0.30 4.72 37.23 2.40
326 341 8.024285 AGCGCATAGATCACTACTTTAGTAATC 58.976 37.037 11.47 0.00 37.23 1.75
327 342 7.887381 AGCGCATAGATCACTACTTTAGTAAT 58.113 34.615 11.47 0.00 37.23 1.89
328 343 7.228906 AGAGCGCATAGATCACTACTTTAGTAA 59.771 37.037 11.47 0.00 37.82 2.24
329 344 6.711194 AGAGCGCATAGATCACTACTTTAGTA 59.289 38.462 11.47 0.00 37.82 1.82
330 345 5.533154 AGAGCGCATAGATCACTACTTTAGT 59.467 40.000 11.47 0.00 37.82 2.24
331 346 6.007936 AGAGCGCATAGATCACTACTTTAG 57.992 41.667 11.47 0.00 37.82 1.85
332 347 6.392625 AAGAGCGCATAGATCACTACTTTA 57.607 37.500 11.47 0.00 37.82 1.85
333 348 4.927978 AGAGCGCATAGATCACTACTTT 57.072 40.909 11.47 0.00 37.82 2.66
334 349 4.927978 AAGAGCGCATAGATCACTACTT 57.072 40.909 11.47 0.00 37.82 2.24
335 350 7.873719 ATATAAGAGCGCATAGATCACTACT 57.126 36.000 11.47 0.00 37.82 2.57
336 351 8.918961 AAATATAAGAGCGCATAGATCACTAC 57.081 34.615 11.47 0.00 37.82 2.73
337 352 8.961634 AGAAATATAAGAGCGCATAGATCACTA 58.038 33.333 11.47 0.00 37.82 2.74
338 353 7.835822 AGAAATATAAGAGCGCATAGATCACT 58.164 34.615 11.47 3.47 37.82 3.41
339 354 8.472683 AAGAAATATAAGAGCGCATAGATCAC 57.527 34.615 11.47 1.37 37.82 3.06
342 357 9.929180 TGTAAAGAAATATAAGAGCGCATAGAT 57.071 29.630 11.47 0.00 0.00 1.98
343 358 9.411801 CTGTAAAGAAATATAAGAGCGCATAGA 57.588 33.333 11.47 0.00 0.00 1.98
344 359 9.411801 TCTGTAAAGAAATATAAGAGCGCATAG 57.588 33.333 11.47 0.00 0.00 2.23
345 360 9.411801 CTCTGTAAAGAAATATAAGAGCGCATA 57.588 33.333 11.47 0.00 0.00 3.14
346 361 7.386299 CCTCTGTAAAGAAATATAAGAGCGCAT 59.614 37.037 11.47 0.00 0.00 4.73
347 362 6.701841 CCTCTGTAAAGAAATATAAGAGCGCA 59.298 38.462 11.47 0.00 0.00 6.09
348 363 6.146347 CCCTCTGTAAAGAAATATAAGAGCGC 59.854 42.308 0.00 0.00 0.00 5.92
349 364 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
350 365 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
358 373 7.939588 GCCATAATACTCCCTCTGTAAAGAAAT 59.060 37.037 0.00 0.00 0.00 2.17
359 374 7.092623 TGCCATAATACTCCCTCTGTAAAGAAA 60.093 37.037 0.00 0.00 0.00 2.52
360 375 6.385759 TGCCATAATACTCCCTCTGTAAAGAA 59.614 38.462 0.00 0.00 0.00 2.52
361 376 5.903010 TGCCATAATACTCCCTCTGTAAAGA 59.097 40.000 0.00 0.00 0.00 2.52
362 377 6.174720 TGCCATAATACTCCCTCTGTAAAG 57.825 41.667 0.00 0.00 0.00 1.85
363 378 5.665812 ACTGCCATAATACTCCCTCTGTAAA 59.334 40.000 0.00 0.00 0.00 2.01
364 379 5.216622 ACTGCCATAATACTCCCTCTGTAA 58.783 41.667 0.00 0.00 0.00 2.41
365 380 4.816126 ACTGCCATAATACTCCCTCTGTA 58.184 43.478 0.00 0.00 0.00 2.74
366 381 3.658725 ACTGCCATAATACTCCCTCTGT 58.341 45.455 0.00 0.00 0.00 3.41
367 382 4.101585 TCAACTGCCATAATACTCCCTCTG 59.898 45.833 0.00 0.00 0.00 3.35
368 383 4.298626 TCAACTGCCATAATACTCCCTCT 58.701 43.478 0.00 0.00 0.00 3.69
369 384 4.689612 TCAACTGCCATAATACTCCCTC 57.310 45.455 0.00 0.00 0.00 4.30
370 385 5.132648 TCAATCAACTGCCATAATACTCCCT 59.867 40.000 0.00 0.00 0.00 4.20
371 386 5.376625 TCAATCAACTGCCATAATACTCCC 58.623 41.667 0.00 0.00 0.00 4.30
372 387 6.203723 GTCTCAATCAACTGCCATAATACTCC 59.796 42.308 0.00 0.00 0.00 3.85
373 388 6.203723 GGTCTCAATCAACTGCCATAATACTC 59.796 42.308 0.00 0.00 0.00 2.59
374 389 6.058183 GGTCTCAATCAACTGCCATAATACT 58.942 40.000 0.00 0.00 0.00 2.12
375 390 5.239525 GGGTCTCAATCAACTGCCATAATAC 59.760 44.000 0.00 0.00 0.00 1.89
376 391 5.132648 AGGGTCTCAATCAACTGCCATAATA 59.867 40.000 0.00 0.00 0.00 0.98
377 392 4.079558 AGGGTCTCAATCAACTGCCATAAT 60.080 41.667 0.00 0.00 0.00 1.28
394 409 2.397044 TGGCATTTGGAAAAGGGTCT 57.603 45.000 0.00 0.00 0.00 3.85
409 424 2.741092 GAGTCGTCCCACTTGGCA 59.259 61.111 0.00 0.00 0.00 4.92
427 451 1.034292 GTCTGGCTTCTCCCCAATGC 61.034 60.000 0.00 0.00 30.66 3.56
429 453 0.909610 TCGTCTGGCTTCTCCCCAAT 60.910 55.000 0.00 0.00 30.66 3.16
431 455 2.119611 TCGTCTGGCTTCTCCCCA 59.880 61.111 0.00 0.00 0.00 4.96
435 459 1.137825 CTCGGTCGTCTGGCTTCTC 59.862 63.158 0.00 0.00 0.00 2.87
446 470 2.126307 CCAGTCACTGCTCGGTCG 60.126 66.667 0.00 0.00 0.00 4.79
449 473 2.047844 CCACCAGTCACTGCTCGG 60.048 66.667 0.00 0.00 0.00 4.63
450 474 2.740055 GCCACCAGTCACTGCTCG 60.740 66.667 0.00 0.00 0.00 5.03
454 478 1.645034 CTAATCGCCACCAGTCACTG 58.355 55.000 0.00 0.00 0.00 3.66
461 485 1.138859 CACATCTCCTAATCGCCACCA 59.861 52.381 0.00 0.00 0.00 4.17
522 546 1.841302 AAGGATGACGGGCAGCTTGA 61.841 55.000 0.00 0.00 32.29 3.02
523 547 1.377725 AAGGATGACGGGCAGCTTG 60.378 57.895 0.00 0.00 32.29 4.01
525 549 2.270205 CAAGGATGACGGGCAGCT 59.730 61.111 0.00 0.00 32.29 4.24
526 550 2.045926 ACAAGGATGACGGGCAGC 60.046 61.111 0.00 0.00 0.00 5.25
528 552 0.107703 GATCACAAGGATGACGGGCA 60.108 55.000 0.00 0.00 36.00 5.36
530 554 1.066215 TGTGATCACAAGGATGACGGG 60.066 52.381 26.02 0.00 42.34 5.28
531 555 2.274437 CTGTGATCACAAGGATGACGG 58.726 52.381 27.63 10.36 42.34 4.79
532 556 1.662629 GCTGTGATCACAAGGATGACG 59.337 52.381 27.63 15.11 42.34 4.35
533 557 2.417933 GTGCTGTGATCACAAGGATGAC 59.582 50.000 27.63 14.18 41.33 3.06
534 558 2.038820 TGTGCTGTGATCACAAGGATGA 59.961 45.455 27.63 11.83 41.01 2.92
535 559 2.429478 TGTGCTGTGATCACAAGGATG 58.571 47.619 27.63 17.15 41.01 3.51
536 560 2.865119 TGTGCTGTGATCACAAGGAT 57.135 45.000 27.63 0.00 41.01 3.24
537 561 2.636647 TTGTGCTGTGATCACAAGGA 57.363 45.000 27.63 19.44 45.99 3.36
541 565 1.946745 TTCGTTGTGCTGTGATCACA 58.053 45.000 26.33 26.33 42.10 3.58
542 566 2.639751 GTTTCGTTGTGCTGTGATCAC 58.360 47.619 19.27 19.27 35.14 3.06
543 567 1.260297 CGTTTCGTTGTGCTGTGATCA 59.740 47.619 0.00 0.00 0.00 2.92
544 568 1.937359 CGTTTCGTTGTGCTGTGATC 58.063 50.000 0.00 0.00 0.00 2.92
546 570 1.350319 GCGTTTCGTTGTGCTGTGA 59.650 52.632 0.00 0.00 0.00 3.58
547 571 1.654137 GGCGTTTCGTTGTGCTGTG 60.654 57.895 0.00 0.00 0.00 3.66
548 572 2.047151 CTGGCGTTTCGTTGTGCTGT 62.047 55.000 0.00 0.00 0.00 4.40
550 574 1.092921 TTCTGGCGTTTCGTTGTGCT 61.093 50.000 0.00 0.00 0.00 4.40
552 576 2.181426 TTTTCTGGCGTTTCGTTGTG 57.819 45.000 0.00 0.00 0.00 3.33
553 577 3.430333 AATTTTCTGGCGTTTCGTTGT 57.570 38.095 0.00 0.00 0.00 3.32
554 578 4.504385 CAAAATTTTCTGGCGTTTCGTTG 58.496 39.130 0.00 0.00 0.00 4.10
555 579 3.553917 CCAAAATTTTCTGGCGTTTCGTT 59.446 39.130 0.00 0.00 0.00 3.85
556 580 3.120041 CCAAAATTTTCTGGCGTTTCGT 58.880 40.909 0.00 0.00 0.00 3.85
557 581 3.769009 CCAAAATTTTCTGGCGTTTCG 57.231 42.857 0.00 0.00 0.00 3.46
564 588 0.034616 TGCCCGCCAAAATTTTCTGG 59.965 50.000 0.00 2.31 35.67 3.86
565 589 1.876322 TTGCCCGCCAAAATTTTCTG 58.124 45.000 0.00 0.00 0.00 3.02
566 590 2.038295 TCATTGCCCGCCAAAATTTTCT 59.962 40.909 0.00 0.00 36.92 2.52
567 591 2.421619 TCATTGCCCGCCAAAATTTTC 58.578 42.857 0.00 0.00 36.92 2.29
568 592 2.557920 TCATTGCCCGCCAAAATTTT 57.442 40.000 0.00 0.00 36.92 1.82
581 674 1.325355 CTGACCCATGGGATCATTGC 58.675 55.000 38.07 15.94 38.96 3.56
589 682 2.044650 CACTGGCTGACCCATGGG 60.045 66.667 30.23 30.23 44.33 4.00
591 684 2.338015 GCACACTGGCTGACCCATG 61.338 63.158 0.00 0.00 44.33 3.66
592 685 2.034687 GCACACTGGCTGACCCAT 59.965 61.111 0.00 0.00 44.33 4.00
593 686 2.832778 ATGCACACTGGCTGACCCA 61.833 57.895 0.00 0.00 42.79 4.51
595 688 1.601759 ACATGCACACTGGCTGACC 60.602 57.895 0.00 0.00 34.04 4.02
596 689 0.886043 TCACATGCACACTGGCTGAC 60.886 55.000 0.00 0.00 34.04 3.51
610 721 1.973515 TGGCTCACTCACTCTTCACAT 59.026 47.619 0.00 0.00 0.00 3.21
643 754 4.874977 GGCGGGCTAGTCGACAGC 62.875 72.222 23.39 23.39 41.58 4.40
644 755 4.208686 GGGCGGGCTAGTCGACAG 62.209 72.222 19.50 13.76 37.38 3.51
674 792 1.884464 CGATCCCTCGCCATGTGTG 60.884 63.158 0.00 0.00 38.20 3.82
675 793 1.613317 TTCGATCCCTCGCCATGTGT 61.613 55.000 0.00 0.00 44.65 3.72
676 794 0.250038 ATTCGATCCCTCGCCATGTG 60.250 55.000 0.00 0.00 44.65 3.21
677 795 0.034059 GATTCGATCCCTCGCCATGT 59.966 55.000 0.00 0.00 44.65 3.21
678 796 1.010935 CGATTCGATCCCTCGCCATG 61.011 60.000 0.00 0.00 44.65 3.66
679 797 1.290324 CGATTCGATCCCTCGCCAT 59.710 57.895 0.00 0.00 44.65 4.40
680 798 2.728180 CGATTCGATCCCTCGCCA 59.272 61.111 0.00 0.00 44.65 5.69
683 801 3.100191 GCGCGATTCGATCCCTCG 61.100 66.667 12.10 3.71 46.41 4.63
684 802 3.100191 CGCGCGATTCGATCCCTC 61.100 66.667 28.94 0.00 41.67 4.30
685 803 3.544167 CTCGCGCGATTCGATCCCT 62.544 63.158 34.86 0.00 41.67 4.20
686 804 3.100191 CTCGCGCGATTCGATCCC 61.100 66.667 34.86 0.00 41.67 3.85
687 805 3.100191 CCTCGCGCGATTCGATCC 61.100 66.667 34.86 0.00 41.67 3.36
688 806 3.100191 CCCTCGCGCGATTCGATC 61.100 66.667 34.86 0.00 41.67 3.69
689 807 3.825833 GACCCTCGCGCGATTCGAT 62.826 63.158 34.86 17.09 41.67 3.59
690 808 4.547905 GACCCTCGCGCGATTCGA 62.548 66.667 34.86 10.97 41.67 3.71
691 809 4.554363 AGACCCTCGCGCGATTCG 62.554 66.667 34.86 24.11 42.12 3.34
699 817 3.254024 TTGCTCCCAAGACCCTCGC 62.254 63.158 0.00 0.00 0.00 5.03
737 859 1.226435 CGAAAGCGAGACGAGGGAG 60.226 63.158 0.00 0.00 40.82 4.30
786 910 1.619975 AGGACGAGGAGGAGGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
787 911 1.454847 CAGGACGAGGAGGAGGAGG 60.455 68.421 0.00 0.00 0.00 4.30
788 912 1.454847 CCAGGACGAGGAGGAGGAG 60.455 68.421 0.00 0.00 0.00 3.69
806 930 1.715585 CACGTCGCCATGAATGACC 59.284 57.895 0.00 0.00 0.00 4.02
823 947 2.253656 TAGGGGAGAGGTGGGAGCA 61.254 63.158 0.00 0.00 0.00 4.26
869 993 4.060900 CAGAAGAGACAAGCAACTAAGCA 58.939 43.478 0.00 0.00 36.85 3.91
870 994 3.120373 GCAGAAGAGACAAGCAACTAAGC 60.120 47.826 0.00 0.00 0.00 3.09
871 995 3.122613 CGCAGAAGAGACAAGCAACTAAG 59.877 47.826 0.00 0.00 0.00 2.18
872 996 3.059884 CGCAGAAGAGACAAGCAACTAA 58.940 45.455 0.00 0.00 0.00 2.24
873 997 2.677199 CGCAGAAGAGACAAGCAACTA 58.323 47.619 0.00 0.00 0.00 2.24
874 998 1.506493 CGCAGAAGAGACAAGCAACT 58.494 50.000 0.00 0.00 0.00 3.16
875 999 0.110464 GCGCAGAAGAGACAAGCAAC 60.110 55.000 0.30 0.00 0.00 4.17
876 1000 1.230635 GGCGCAGAAGAGACAAGCAA 61.231 55.000 10.83 0.00 0.00 3.91
921 1045 2.991866 GCACCGTCTTCTTGGTAAGTAC 59.008 50.000 0.00 0.00 36.50 2.73
943 1076 0.949105 TTCTTCTTCTTGGCGCGGAC 60.949 55.000 8.83 0.00 0.00 4.79
962 1095 1.548269 CTCCTTCGACCTTCTTCTGCT 59.452 52.381 0.00 0.00 0.00 4.24
963 1096 1.404851 CCTCCTTCGACCTTCTTCTGC 60.405 57.143 0.00 0.00 0.00 4.26
964 1097 2.165437 CTCCTCCTTCGACCTTCTTCTG 59.835 54.545 0.00 0.00 0.00 3.02
965 1098 2.452505 CTCCTCCTTCGACCTTCTTCT 58.547 52.381 0.00 0.00 0.00 2.85
966 1099 1.478916 CCTCCTCCTTCGACCTTCTTC 59.521 57.143 0.00 0.00 0.00 2.87
967 1100 1.562783 CCTCCTCCTTCGACCTTCTT 58.437 55.000 0.00 0.00 0.00 2.52
968 1101 0.324830 CCCTCCTCCTTCGACCTTCT 60.325 60.000 0.00 0.00 0.00 2.85
969 1102 1.331399 CCCCTCCTCCTTCGACCTTC 61.331 65.000 0.00 0.00 0.00 3.46
970 1103 1.306226 CCCCTCCTCCTTCGACCTT 60.306 63.158 0.00 0.00 0.00 3.50
971 1104 2.364961 CCCCTCCTCCTTCGACCT 59.635 66.667 0.00 0.00 0.00 3.85
972 1105 3.471806 GCCCCTCCTCCTTCGACC 61.472 72.222 0.00 0.00 0.00 4.79
973 1106 3.839432 CGCCCCTCCTCCTTCGAC 61.839 72.222 0.00 0.00 0.00 4.20
976 1109 3.157949 CTCCGCCCCTCCTCCTTC 61.158 72.222 0.00 0.00 0.00 3.46
977 1110 3.684628 TCTCCGCCCCTCCTCCTT 61.685 66.667 0.00 0.00 0.00 3.36
1050 1196 1.346722 CAGAAGTAACACTCCCCCGTT 59.653 52.381 0.00 0.00 0.00 4.44
1062 1208 0.524862 GAGACCGGTCGCAGAAGTAA 59.475 55.000 30.48 0.00 39.69 2.24
1077 1223 3.376078 TACACCACGGCCGGAGAC 61.376 66.667 31.76 0.00 0.00 3.36
1078 1224 3.376078 GTACACCACGGCCGGAGA 61.376 66.667 31.76 5.12 0.00 3.71
1233 1379 2.202676 GAGCAGAGGAACCGAGCG 60.203 66.667 0.00 0.00 0.00 5.03
1236 1382 0.832135 AGTTGGAGCAGAGGAACCGA 60.832 55.000 0.00 0.00 0.00 4.69
1251 1397 1.347817 GCTCCTCGAAGTCGCAGTTG 61.348 60.000 0.00 0.00 39.60 3.16
1279 1425 2.539081 GCACAACCTCCCCTTCCCT 61.539 63.158 0.00 0.00 0.00 4.20
1284 1430 3.971702 GGCTGCACAACCTCCCCT 61.972 66.667 0.50 0.00 0.00 4.79
1324 1473 4.468689 GGTGTAGCCCTCCACCGC 62.469 72.222 0.00 0.00 41.55 5.68
1407 1556 4.320456 CAGACAGGCCACCACGCT 62.320 66.667 5.01 0.00 0.00 5.07
1507 1656 2.206036 AACCTTGGGGGAGGACGA 59.794 61.111 0.00 0.00 39.25 4.20
1508 1657 2.351276 CAACCTTGGGGGAGGACG 59.649 66.667 0.00 0.00 39.25 4.79
1509 1658 2.763902 CCAACCTTGGGGGAGGAC 59.236 66.667 0.00 0.00 44.70 3.85
1555 1720 1.287815 CGGACGGTGAACAGTAGCA 59.712 57.895 0.00 0.00 0.00 3.49
1749 1945 2.671896 AATCTGAAGATCCCCATGGC 57.328 50.000 6.09 0.00 32.75 4.40
1848 2044 5.008613 CGATTCAAAGTTCCAAACCTGAGAA 59.991 40.000 0.00 0.00 0.00 2.87
1850 2046 4.515191 TCGATTCAAAGTTCCAAACCTGAG 59.485 41.667 0.00 0.00 0.00 3.35
1871 2071 3.871594 AGGGAGATCAGCGTAAAAATTCG 59.128 43.478 0.00 0.00 0.00 3.34
1888 2089 6.696411 CAAATATAGCTAGTCAGGAAGGGAG 58.304 44.000 0.00 0.00 0.00 4.30
1891 2092 4.926238 CGCAAATATAGCTAGTCAGGAAGG 59.074 45.833 0.00 0.00 0.00 3.46
1916 2117 9.466497 AAATCTGATGGTATGTATCAACAAACT 57.534 29.630 0.00 0.00 39.58 2.66
1928 2129 7.228108 ACTGCATTCTGTAAATCTGATGGTATG 59.772 37.037 0.00 0.00 0.00 2.39
1929 2130 7.285566 ACTGCATTCTGTAAATCTGATGGTAT 58.714 34.615 0.00 0.00 0.00 2.73
1930 2131 6.653020 ACTGCATTCTGTAAATCTGATGGTA 58.347 36.000 0.00 0.00 0.00 3.25
1933 2134 8.429493 TCTTACTGCATTCTGTAAATCTGATG 57.571 34.615 0.00 0.00 36.58 3.07
1960 2161 6.393720 GGCAACTTTGTAAAACTGCATATG 57.606 37.500 0.00 0.00 30.96 1.78
1982 2183 6.713762 TCATATAATTTTGCAGGGACAAGG 57.286 37.500 0.00 0.00 0.00 3.61
1986 2187 9.476202 GGTTAATTCATATAATTTTGCAGGGAC 57.524 33.333 0.00 0.00 0.00 4.46
1987 2188 8.646900 GGGTTAATTCATATAATTTTGCAGGGA 58.353 33.333 0.00 0.00 0.00 4.20
1989 2190 8.428063 TGGGGTTAATTCATATAATTTTGCAGG 58.572 33.333 0.00 0.00 0.00 4.85
2020 2221 3.580458 AGAGTTCAGTCTATGGTTGCACT 59.420 43.478 0.00 0.00 0.00 4.40
2021 2222 3.681897 CAGAGTTCAGTCTATGGTTGCAC 59.318 47.826 0.00 0.00 0.00 4.57
2022 2223 3.578282 TCAGAGTTCAGTCTATGGTTGCA 59.422 43.478 0.00 0.00 0.00 4.08
2023 2224 4.193826 TCAGAGTTCAGTCTATGGTTGC 57.806 45.455 0.00 0.00 0.00 4.17
2024 2225 7.173907 ACAAATTCAGAGTTCAGTCTATGGTTG 59.826 37.037 0.00 0.00 0.00 3.77
2025 2226 7.173907 CACAAATTCAGAGTTCAGTCTATGGTT 59.826 37.037 0.00 0.00 0.00 3.67
2026 2227 6.652481 CACAAATTCAGAGTTCAGTCTATGGT 59.348 38.462 0.00 0.00 0.00 3.55
2029 2238 7.389053 GGTTCACAAATTCAGAGTTCAGTCTAT 59.611 37.037 0.00 0.00 0.00 1.98
2044 2253 3.081804 GGATCGGTCTGGTTCACAAATT 58.918 45.455 0.00 0.00 0.00 1.82
2050 2259 0.459899 CGATGGATCGGTCTGGTTCA 59.540 55.000 0.00 0.00 45.93 3.18
2051 2260 3.274393 CGATGGATCGGTCTGGTTC 57.726 57.895 0.00 0.00 45.93 3.62
2061 2270 2.863137 GCTTGTGAGTTCTCGATGGATC 59.137 50.000 0.00 0.00 0.00 3.36
2062 2271 2.419297 GGCTTGTGAGTTCTCGATGGAT 60.419 50.000 0.00 0.00 0.00 3.41
2063 2272 1.066858 GGCTTGTGAGTTCTCGATGGA 60.067 52.381 0.00 0.00 0.00 3.41
2064 2273 1.338105 TGGCTTGTGAGTTCTCGATGG 60.338 52.381 0.00 0.00 0.00 3.51
2065 2274 2.084610 TGGCTTGTGAGTTCTCGATG 57.915 50.000 0.00 0.00 0.00 3.84
2066 2275 3.340814 AATGGCTTGTGAGTTCTCGAT 57.659 42.857 0.00 0.00 0.00 3.59
2067 2276 2.839486 AATGGCTTGTGAGTTCTCGA 57.161 45.000 0.00 0.00 0.00 4.04
2068 2277 2.160417 GGAAATGGCTTGTGAGTTCTCG 59.840 50.000 0.00 0.00 0.00 4.04
2069 2278 3.416156 AGGAAATGGCTTGTGAGTTCTC 58.584 45.455 0.00 0.00 0.00 2.87
2088 2297 3.559655 CCCGCAAAAAGGAAAAGAAAAGG 59.440 43.478 0.00 0.00 0.00 3.11
2092 2301 4.473477 TTTCCCGCAAAAAGGAAAAGAA 57.527 36.364 1.82 0.00 46.55 2.52
2097 2306 3.897141 AGTTTTTCCCGCAAAAAGGAA 57.103 38.095 4.07 0.00 43.27 3.36
2098 2307 3.897141 AAGTTTTTCCCGCAAAAAGGA 57.103 38.095 4.07 0.00 43.27 3.36
2099 2308 3.935828 TGAAAGTTTTTCCCGCAAAAAGG 59.064 39.130 4.07 0.00 43.27 3.11
2100 2309 5.142635 CTGAAAGTTTTTCCCGCAAAAAG 57.857 39.130 4.07 0.00 43.27 2.27
2116 2325 9.770503 CTTGACATTTGATGAATAGACTGAAAG 57.229 33.333 0.00 0.00 42.29 2.62
2117 2326 8.733458 CCTTGACATTTGATGAATAGACTGAAA 58.267 33.333 0.00 0.00 0.00 2.69
2119 2328 7.397221 ACCTTGACATTTGATGAATAGACTGA 58.603 34.615 0.00 0.00 0.00 3.41
2120 2329 7.621428 ACCTTGACATTTGATGAATAGACTG 57.379 36.000 0.00 0.00 0.00 3.51
2121 2330 9.911788 ATTACCTTGACATTTGATGAATAGACT 57.088 29.630 0.00 0.00 0.00 3.24
2166 2375 9.308000 TGGTCTATGAACCTGAATGTAATTTTT 57.692 29.630 0.68 0.00 37.09 1.94
2167 2376 8.739972 GTGGTCTATGAACCTGAATGTAATTTT 58.260 33.333 0.68 0.00 37.09 1.82
2168 2377 7.339466 GGTGGTCTATGAACCTGAATGTAATTT 59.661 37.037 0.68 0.00 37.09 1.82
2169 2378 6.828785 GGTGGTCTATGAACCTGAATGTAATT 59.171 38.462 0.68 0.00 38.76 1.40
2170 2379 6.158695 AGGTGGTCTATGAACCTGAATGTAAT 59.841 38.462 0.00 0.00 42.78 1.89
2171 2380 5.487488 AGGTGGTCTATGAACCTGAATGTAA 59.513 40.000 0.00 0.00 42.78 2.41
2172 2381 5.030147 AGGTGGTCTATGAACCTGAATGTA 58.970 41.667 0.00 0.00 42.78 2.29
2173 2382 3.846588 AGGTGGTCTATGAACCTGAATGT 59.153 43.478 0.00 0.00 42.78 2.71
2174 2383 4.494091 AGGTGGTCTATGAACCTGAATG 57.506 45.455 0.00 0.00 42.78 2.67
2175 2384 5.487488 TGTTAGGTGGTCTATGAACCTGAAT 59.513 40.000 3.85 0.00 44.13 2.57
2176 2385 4.841813 TGTTAGGTGGTCTATGAACCTGAA 59.158 41.667 3.85 0.00 44.13 3.02
2177 2386 4.422057 TGTTAGGTGGTCTATGAACCTGA 58.578 43.478 3.85 0.00 44.13 3.86
2178 2387 4.819105 TGTTAGGTGGTCTATGAACCTG 57.181 45.455 3.85 0.00 44.13 4.00
2179 2388 4.322499 CGTTGTTAGGTGGTCTATGAACCT 60.322 45.833 0.00 0.00 46.14 3.50
2180 2389 3.930848 CGTTGTTAGGTGGTCTATGAACC 59.069 47.826 0.00 0.00 39.94 3.62
2181 2390 4.624452 GTCGTTGTTAGGTGGTCTATGAAC 59.376 45.833 0.00 0.00 0.00 3.18
2182 2391 4.525487 AGTCGTTGTTAGGTGGTCTATGAA 59.475 41.667 0.00 0.00 0.00 2.57
2183 2392 4.084287 AGTCGTTGTTAGGTGGTCTATGA 58.916 43.478 0.00 0.00 0.00 2.15
2184 2393 4.451629 AGTCGTTGTTAGGTGGTCTATG 57.548 45.455 0.00 0.00 0.00 2.23
2185 2394 5.012239 TGTAGTCGTTGTTAGGTGGTCTAT 58.988 41.667 0.00 0.00 0.00 1.98
2186 2395 4.397420 TGTAGTCGTTGTTAGGTGGTCTA 58.603 43.478 0.00 0.00 0.00 2.59
2187 2396 3.225104 TGTAGTCGTTGTTAGGTGGTCT 58.775 45.455 0.00 0.00 0.00 3.85
2188 2397 3.648339 TGTAGTCGTTGTTAGGTGGTC 57.352 47.619 0.00 0.00 0.00 4.02
2189 2398 3.801293 GCTTGTAGTCGTTGTTAGGTGGT 60.801 47.826 0.00 0.00 0.00 4.16
2190 2399 2.735134 GCTTGTAGTCGTTGTTAGGTGG 59.265 50.000 0.00 0.00 0.00 4.61
2191 2400 3.183775 GTGCTTGTAGTCGTTGTTAGGTG 59.816 47.826 0.00 0.00 0.00 4.00
2192 2401 3.069158 AGTGCTTGTAGTCGTTGTTAGGT 59.931 43.478 0.00 0.00 0.00 3.08
2193 2402 3.428870 CAGTGCTTGTAGTCGTTGTTAGG 59.571 47.826 0.00 0.00 0.00 2.69
2194 2403 3.428870 CCAGTGCTTGTAGTCGTTGTTAG 59.571 47.826 0.00 0.00 0.00 2.34
2195 2404 3.068448 TCCAGTGCTTGTAGTCGTTGTTA 59.932 43.478 0.00 0.00 0.00 2.41
2196 2405 2.159014 TCCAGTGCTTGTAGTCGTTGTT 60.159 45.455 0.00 0.00 0.00 2.83
2197 2406 1.411246 TCCAGTGCTTGTAGTCGTTGT 59.589 47.619 0.00 0.00 0.00 3.32
2198 2407 2.148916 TCCAGTGCTTGTAGTCGTTG 57.851 50.000 0.00 0.00 0.00 4.10
2199 2408 2.159014 TGTTCCAGTGCTTGTAGTCGTT 60.159 45.455 0.00 0.00 0.00 3.85
2200 2409 1.411246 TGTTCCAGTGCTTGTAGTCGT 59.589 47.619 0.00 0.00 0.00 4.34
2201 2410 2.148916 TGTTCCAGTGCTTGTAGTCG 57.851 50.000 0.00 0.00 0.00 4.18
2202 2411 3.495001 GTCTTGTTCCAGTGCTTGTAGTC 59.505 47.826 0.00 0.00 0.00 2.59
2203 2412 3.467803 GTCTTGTTCCAGTGCTTGTAGT 58.532 45.455 0.00 0.00 0.00 2.73
2204 2413 2.476619 CGTCTTGTTCCAGTGCTTGTAG 59.523 50.000 0.00 0.00 0.00 2.74
2205 2414 2.479837 CGTCTTGTTCCAGTGCTTGTA 58.520 47.619 0.00 0.00 0.00 2.41
2206 2415 1.299541 CGTCTTGTTCCAGTGCTTGT 58.700 50.000 0.00 0.00 0.00 3.16
2207 2416 0.588252 CCGTCTTGTTCCAGTGCTTG 59.412 55.000 0.00 0.00 0.00 4.01
2208 2417 0.468226 TCCGTCTTGTTCCAGTGCTT 59.532 50.000 0.00 0.00 0.00 3.91
2209 2418 0.034059 CTCCGTCTTGTTCCAGTGCT 59.966 55.000 0.00 0.00 0.00 4.40
2210 2419 0.951040 CCTCCGTCTTGTTCCAGTGC 60.951 60.000 0.00 0.00 0.00 4.40
2211 2420 0.951040 GCCTCCGTCTTGTTCCAGTG 60.951 60.000 0.00 0.00 0.00 3.66
2212 2421 1.371558 GCCTCCGTCTTGTTCCAGT 59.628 57.895 0.00 0.00 0.00 4.00
2213 2422 0.250295 TTGCCTCCGTCTTGTTCCAG 60.250 55.000 0.00 0.00 0.00 3.86
2214 2423 0.250295 CTTGCCTCCGTCTTGTTCCA 60.250 55.000 0.00 0.00 0.00 3.53
2215 2424 1.578206 GCTTGCCTCCGTCTTGTTCC 61.578 60.000 0.00 0.00 0.00 3.62
2216 2425 1.578206 GGCTTGCCTCCGTCTTGTTC 61.578 60.000 4.11 0.00 0.00 3.18
2217 2426 1.600916 GGCTTGCCTCCGTCTTGTT 60.601 57.895 4.11 0.00 0.00 2.83
2218 2427 2.032681 GGCTTGCCTCCGTCTTGT 59.967 61.111 4.11 0.00 0.00 3.16
2219 2428 3.121030 CGGCTTGCCTCCGTCTTG 61.121 66.667 10.12 0.00 41.85 3.02
2238 2447 3.917760 GAGGGAGGGCCGATGACG 61.918 72.222 0.00 0.00 39.43 4.35
2239 2448 2.143419 ATGAGGGAGGGCCGATGAC 61.143 63.158 0.00 0.00 33.83 3.06
2240 2449 2.142761 CATGAGGGAGGGCCGATGA 61.143 63.158 0.00 0.00 33.83 2.92
2241 2450 2.429058 CATGAGGGAGGGCCGATG 59.571 66.667 0.00 0.00 33.83 3.84
2242 2451 2.851102 CCATGAGGGAGGGCCGAT 60.851 66.667 0.00 0.00 40.01 4.18
2256 2465 1.153061 CTGGATGCATGGCTCCCAT 59.847 57.895 2.46 0.00 46.37 4.00
2257 2466 1.573607 TTCTGGATGCATGGCTCCCA 61.574 55.000 2.46 3.55 38.19 4.37
2258 2467 0.396139 TTTCTGGATGCATGGCTCCC 60.396 55.000 2.46 0.00 0.00 4.30
2259 2468 1.477553 TTTTCTGGATGCATGGCTCC 58.522 50.000 2.46 0.00 0.00 4.70
2260 2469 3.814005 ATTTTTCTGGATGCATGGCTC 57.186 42.857 2.46 0.00 0.00 4.70
2261 2470 4.141869 GGTAATTTTTCTGGATGCATGGCT 60.142 41.667 2.46 0.00 0.00 4.75
2262 2471 4.122046 GGTAATTTTTCTGGATGCATGGC 58.878 43.478 2.46 0.00 0.00 4.40
2263 2472 5.341872 TGGTAATTTTTCTGGATGCATGG 57.658 39.130 2.46 0.00 0.00 3.66
2264 2473 4.807304 GCTGGTAATTTTTCTGGATGCATG 59.193 41.667 2.46 0.00 0.00 4.06
2265 2474 4.467082 TGCTGGTAATTTTTCTGGATGCAT 59.533 37.500 0.00 0.00 0.00 3.96
2266 2475 3.831333 TGCTGGTAATTTTTCTGGATGCA 59.169 39.130 0.00 0.00 0.00 3.96
2267 2476 4.454728 TGCTGGTAATTTTTCTGGATGC 57.545 40.909 0.00 0.00 0.00 3.91
2268 2477 6.400568 ACAATGCTGGTAATTTTTCTGGATG 58.599 36.000 0.00 0.00 0.00 3.51
2269 2478 6.610075 ACAATGCTGGTAATTTTTCTGGAT 57.390 33.333 0.00 0.00 0.00 3.41
2305 2527 4.264487 TGCCTTGCCATCCCATATTCATAT 60.264 41.667 0.00 0.00 0.00 1.78
2308 2530 1.217436 TGCCTTGCCATCCCATATTCA 59.783 47.619 0.00 0.00 0.00 2.57
2312 2534 0.852155 TCATGCCTTGCCATCCCATA 59.148 50.000 0.00 0.00 0.00 2.74
2316 2538 2.555757 GTCTAATCATGCCTTGCCATCC 59.444 50.000 0.00 0.00 0.00 3.51
2330 2553 8.921205 TGTTAGGTTGGGATTACTAGTCTAATC 58.079 37.037 0.00 4.13 33.83 1.75
2463 2774 1.418373 GCTGCAACCGGAAAAATCAC 58.582 50.000 9.46 0.00 0.00 3.06
2481 2803 5.131784 ACAGGAGTATATATACTAGGCGGC 58.868 45.833 22.55 10.85 43.27 6.53
2508 2830 3.085533 CTGTGAGCCTGTGACTAGTACT 58.914 50.000 0.00 0.00 0.00 2.73
2509 2831 2.416162 GCTGTGAGCCTGTGACTAGTAC 60.416 54.545 0.00 0.00 34.48 2.73
2510 2832 1.819288 GCTGTGAGCCTGTGACTAGTA 59.181 52.381 0.00 0.00 34.48 1.82
2511 2833 0.605589 GCTGTGAGCCTGTGACTAGT 59.394 55.000 0.00 0.00 34.48 2.57
2512 2834 3.432517 GCTGTGAGCCTGTGACTAG 57.567 57.895 0.00 0.00 34.48 2.57
2522 2844 3.208594 TGTCATAATGATGGCTGTGAGC 58.791 45.455 0.00 0.00 38.58 4.26
2525 2847 5.761165 TCAATGTCATAATGATGGCTGTG 57.239 39.130 0.00 0.00 38.58 3.66
2527 2849 8.398665 CAGATATCAATGTCATAATGATGGCTG 58.601 37.037 5.32 11.09 38.58 4.85
2580 2902 9.436957 GCCGAAGAAATATCAAGATCCTATTAA 57.563 33.333 0.00 0.00 0.00 1.40
2606 2928 2.128771 AGGGATTTCGATTGGTGGTG 57.871 50.000 0.00 0.00 0.00 4.17
2607 2929 2.899303 AAGGGATTTCGATTGGTGGT 57.101 45.000 0.00 0.00 0.00 4.16
2629 2951 2.134346 TCGTACGTTTGGCTTTGTACC 58.866 47.619 16.05 0.00 35.01 3.34
2643 2965 0.806868 TGAACTAGGTGCCTCGTACG 59.193 55.000 9.53 9.53 0.00 3.67
2644 2966 2.165845 ACATGAACTAGGTGCCTCGTAC 59.834 50.000 0.00 0.00 0.00 3.67
2646 2968 1.267121 ACATGAACTAGGTGCCTCGT 58.733 50.000 0.00 0.00 0.00 4.18
2649 2971 3.073062 ACTGAAACATGAACTAGGTGCCT 59.927 43.478 0.00 0.00 0.00 4.75
2651 2973 4.392138 GGTACTGAAACATGAACTAGGTGC 59.608 45.833 0.00 0.00 0.00 5.01
2654 2976 5.065218 GCATGGTACTGAAACATGAACTAGG 59.935 44.000 7.20 0.00 43.46 3.02
2656 2978 5.555966 TGCATGGTACTGAAACATGAACTA 58.444 37.500 7.20 0.00 43.46 2.24
2725 3149 2.588314 CAGGCTGGCAGCTCGATC 60.588 66.667 35.73 20.51 41.99 3.69
2738 3162 0.752743 TATTCACATGGCTGGCAGGC 60.753 55.000 31.94 31.94 41.77 4.85
2739 3163 1.991121 ATATTCACATGGCTGGCAGG 58.009 50.000 17.64 14.52 0.00 4.85
2952 3379 4.760047 ACAGGTGATCGTGGCCGC 62.760 66.667 6.11 6.11 34.26 6.53
2956 3383 2.509336 GGCGACAGGTGATCGTGG 60.509 66.667 0.00 0.00 41.68 4.94
3015 3451 2.431942 CGACGTTCTTGGTCCCCG 60.432 66.667 0.00 0.00 0.00 5.73
3018 3454 3.110178 CGCCGACGTTCTTGGTCC 61.110 66.667 0.00 0.00 33.53 4.46
3117 3553 1.230324 GCGGGGCATTTCTCTGATAC 58.770 55.000 0.00 0.00 0.00 2.24
3121 3557 2.045045 TGGCGGGGCATTTCTCTG 60.045 61.111 0.00 0.00 0.00 3.35
3122 3558 2.044946 GTGGCGGGGCATTTCTCT 60.045 61.111 0.00 0.00 0.00 3.10
3123 3559 2.361104 TGTGGCGGGGCATTTCTC 60.361 61.111 0.00 0.00 0.00 2.87
3125 3561 2.283472 GATGTGTGGCGGGGCATTTC 62.283 60.000 0.00 0.00 0.00 2.17
3126 3562 2.283821 ATGTGTGGCGGGGCATTT 60.284 55.556 0.00 0.00 0.00 2.32
3128 3564 4.045781 TGATGTGTGGCGGGGCAT 62.046 61.111 0.00 0.00 0.00 4.40
3131 3567 2.541547 ATCTGTGATGTGTGGCGGGG 62.542 60.000 0.00 0.00 0.00 5.73
3134 3570 2.981805 CAAAAATCTGTGATGTGTGGCG 59.018 45.455 0.00 0.00 0.00 5.69
3135 3571 3.243839 ACCAAAAATCTGTGATGTGTGGC 60.244 43.478 6.81 0.00 0.00 5.01
3136 3572 4.589216 ACCAAAAATCTGTGATGTGTGG 57.411 40.909 5.59 5.59 0.00 4.17
3138 3574 5.536161 AGCTAACCAAAAATCTGTGATGTGT 59.464 36.000 0.00 0.00 0.00 3.72
3140 3576 5.106555 CGAGCTAACCAAAAATCTGTGATGT 60.107 40.000 0.00 0.00 0.00 3.06
3143 3579 4.213270 CACGAGCTAACCAAAAATCTGTGA 59.787 41.667 0.00 0.00 0.00 3.58
3147 3583 3.831715 GCACGAGCTAACCAAAAATCT 57.168 42.857 0.00 0.00 37.91 2.40
3177 3621 2.477357 CGAACCTGCAGCAAATCAGATG 60.477 50.000 8.66 0.00 32.26 2.90
3331 3788 1.200716 CTACGTAGGGCACAGAACGAA 59.799 52.381 15.07 0.00 38.64 3.85
3332 3789 0.806868 CTACGTAGGGCACAGAACGA 59.193 55.000 15.07 0.00 38.64 3.85
3333 3790 0.801067 GCTACGTAGGGCACAGAACG 60.801 60.000 23.47 6.93 40.99 3.95
3334 3791 0.801067 CGCTACGTAGGGCACAGAAC 60.801 60.000 24.39 4.11 0.00 3.01
3341 3798 3.455469 ACCCACGCTACGTAGGGC 61.455 66.667 32.44 16.68 45.19 5.19
3400 3864 1.076533 GTGATGGCACGTACGACCAG 61.077 60.000 28.85 15.63 36.78 4.00
3418 3883 4.712425 GCGAGTACGTGGTGCCGT 62.712 66.667 0.00 0.00 44.50 5.68
3454 3919 0.460109 ACATATCGCAGCTCGCACAA 60.460 50.000 8.52 0.00 42.60 3.33
3455 3920 0.460109 AACATATCGCAGCTCGCACA 60.460 50.000 8.52 0.00 42.60 4.57
3456 3921 0.652592 AAACATATCGCAGCTCGCAC 59.347 50.000 8.52 0.00 42.60 5.34
3482 3947 1.883275 CACCTGAACCATAACGCCAAA 59.117 47.619 0.00 0.00 0.00 3.28
3483 3948 1.202830 ACACCTGAACCATAACGCCAA 60.203 47.619 0.00 0.00 0.00 4.52
3484 3949 0.398696 ACACCTGAACCATAACGCCA 59.601 50.000 0.00 0.00 0.00 5.69
3485 3950 0.802494 CACACCTGAACCATAACGCC 59.198 55.000 0.00 0.00 0.00 5.68
3486 3951 1.803334 TCACACCTGAACCATAACGC 58.197 50.000 0.00 0.00 0.00 4.84
3487 3952 5.371115 AAAATCACACCTGAACCATAACG 57.629 39.130 0.00 0.00 0.00 3.18
3510 3975 5.352284 TGAACCATAGCGCAAAAAGAAAAA 58.648 33.333 11.47 0.00 0.00 1.94
3511 3976 4.938080 TGAACCATAGCGCAAAAAGAAAA 58.062 34.783 11.47 0.00 0.00 2.29
3512 3977 4.037446 ACTGAACCATAGCGCAAAAAGAAA 59.963 37.500 11.47 0.00 0.00 2.52
3513 3978 3.568007 ACTGAACCATAGCGCAAAAAGAA 59.432 39.130 11.47 0.00 0.00 2.52
3514 3979 3.146066 ACTGAACCATAGCGCAAAAAGA 58.854 40.909 11.47 0.00 0.00 2.52
3515 3980 3.559238 ACTGAACCATAGCGCAAAAAG 57.441 42.857 11.47 0.00 0.00 2.27
3516 3981 4.517453 AGTAACTGAACCATAGCGCAAAAA 59.483 37.500 11.47 0.00 0.00 1.94
3517 3982 4.069304 AGTAACTGAACCATAGCGCAAAA 58.931 39.130 11.47 0.00 0.00 2.44
3518 3983 3.670625 AGTAACTGAACCATAGCGCAAA 58.329 40.909 11.47 0.00 0.00 3.68
3519 3984 3.056107 AGAGTAACTGAACCATAGCGCAA 60.056 43.478 11.47 0.00 0.00 4.85
3520 3985 2.496070 AGAGTAACTGAACCATAGCGCA 59.504 45.455 11.47 0.00 0.00 6.09
3521 3986 3.166489 AGAGTAACTGAACCATAGCGC 57.834 47.619 0.00 0.00 0.00 5.92
3522 3987 4.113354 GGAAGAGTAACTGAACCATAGCG 58.887 47.826 0.00 0.00 0.00 4.26
3555 4283 1.137086 ACATACACACGATCTGAGGGC 59.863 52.381 0.00 0.00 0.00 5.19
3559 4287 4.432712 CCAATGACATACACACGATCTGA 58.567 43.478 0.00 0.00 0.00 3.27
3584 4312 4.051167 TGGGCACAGGCATCCCAG 62.051 66.667 0.00 0.00 44.62 4.45
3627 4357 2.415512 GGTGACTTCGTGGATAACAAGC 59.584 50.000 0.00 0.00 0.00 4.01
3628 4358 3.659786 TGGTGACTTCGTGGATAACAAG 58.340 45.455 0.00 0.00 0.00 3.16
3679 5084 2.370519 TCAATGTTTCTTCGGTGGGAGA 59.629 45.455 0.00 0.00 0.00 3.71
3687 5092 8.335356 TCTAGTCTTTTTGTCAATGTTTCTTCG 58.665 33.333 0.00 0.00 0.00 3.79
3842 5247 0.248296 TTTTTGTGCCGACGAGCAAC 60.248 50.000 11.70 7.80 46.19 4.17
3852 5257 8.309163 TCAAACAATCTGATTATTTTTGTGCC 57.691 30.769 19.87 0.00 31.34 5.01
3998 5403 1.272425 CCCATTAGCTTGTCCAACCCA 60.272 52.381 0.00 0.00 0.00 4.51
4001 5406 0.817654 GGCCCATTAGCTTGTCCAAC 59.182 55.000 0.00 0.00 0.00 3.77
4002 5407 0.407528 TGGCCCATTAGCTTGTCCAA 59.592 50.000 0.00 0.00 0.00 3.53
4003 5408 0.407528 TTGGCCCATTAGCTTGTCCA 59.592 50.000 0.00 0.00 0.00 4.02
4042 5447 3.118223 GGACTGACCTCTCTATTTTGGGG 60.118 52.174 0.00 0.00 35.41 4.96
4141 5561 3.066760 GCCTGGAAATAGAATTTGGGTCG 59.933 47.826 0.00 0.00 0.00 4.79
4192 5612 6.934083 CCAAACAAAAGCTTTACCATGGTTAT 59.066 34.615 25.38 0.00 0.00 1.89
4216 5636 3.356290 AGTAATGAAGTTGCCATGGTCC 58.644 45.455 14.67 1.25 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.