Multiple sequence alignment - TraesCS2A01G119400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G119400 chr2A 100.000 5539 0 0 1 5539 69356627 69351089 0.000000e+00 10229.0
1 TraesCS2A01G119400 chr1B 92.242 4318 190 57 773 5022 611930956 611926716 0.000000e+00 5984.0
2 TraesCS2A01G119400 chr1B 88.193 415 25 8 5149 5539 611926666 611926252 1.810000e-129 473.0
3 TraesCS2A01G119400 chr1B 76.887 212 29 13 4917 5128 656672961 656673152 9.820000e-18 102.0
4 TraesCS2A01G119400 chr2D 91.963 3633 166 40 266 3857 69539416 69535869 0.000000e+00 4975.0
5 TraesCS2A01G119400 chr2D 93.533 866 34 11 4031 4874 69535674 69534809 0.000000e+00 1269.0
6 TraesCS2A01G119400 chr2D 95.131 267 12 1 1 266 576892636 576892370 2.390000e-113 420.0
7 TraesCS2A01G119400 chr2D 90.683 322 17 8 5224 5539 69534575 69534261 3.090000e-112 416.0
8 TraesCS2A01G119400 chr2D 93.007 286 16 3 1 286 411778786 411778505 1.110000e-111 414.0
9 TraesCS2A01G119400 chr2D 95.882 170 7 0 4971 5140 69534769 69534600 5.470000e-70 276.0
10 TraesCS2A01G119400 chr2D 91.139 158 10 2 3779 3936 69535871 69535718 1.560000e-50 211.0
11 TraesCS2A01G119400 chr2B 93.033 2483 113 29 2548 5003 105993740 105991291 0.000000e+00 3572.0
12 TraesCS2A01G119400 chr2B 84.211 722 75 31 1777 2476 105994441 105993737 0.000000e+00 665.0
13 TraesCS2A01G119400 chr2B 91.457 398 22 8 959 1355 105995235 105994849 2.270000e-148 536.0
14 TraesCS2A01G119400 chr2B 95.516 223 10 0 5317 5539 105991116 105990894 1.900000e-94 357.0
15 TraesCS2A01G119400 chr2B 91.579 95 3 3 5227 5316 105991294 105991200 5.830000e-25 126.0
16 TraesCS2A01G119400 chr4A 81.387 591 96 11 2576 3159 222107593 222108176 2.340000e-128 470.0
17 TraesCS2A01G119400 chr3D 95.489 266 12 0 1 266 366948405 366948140 5.130000e-115 425.0
18 TraesCS2A01G119400 chr3D 94.203 276 13 3 1 274 526291578 526291304 8.580000e-113 418.0
19 TraesCS2A01G119400 chr3D 94.444 270 14 1 1 270 503868810 503868542 1.110000e-111 414.0
20 TraesCS2A01G119400 chr6D 95.149 268 13 0 1 268 385214641 385214374 1.840000e-114 424.0
21 TraesCS2A01G119400 chr6D 83.505 97 6 7 5174 5260 450640612 450640516 1.280000e-11 82.4
22 TraesCS2A01G119400 chr4D 95.472 265 12 0 1 265 147017031 147017295 1.840000e-114 424.0
23 TraesCS2A01G119400 chr1D 95.113 266 13 0 1 266 210215658 210215393 2.390000e-113 420.0
24 TraesCS2A01G119400 chr1D 78.453 362 36 20 4921 5269 436856208 436855876 1.220000e-46 198.0
25 TraesCS2A01G119400 chr5D 92.308 286 18 4 1 286 376159576 376159295 2.400000e-108 403.0
26 TraesCS2A01G119400 chr5D 91.837 49 4 0 5223 5271 17506460 17506412 9.960000e-08 69.4
27 TraesCS2A01G119400 chr1A 80.000 360 40 16 4921 5269 533760386 533760048 2.580000e-58 237.0
28 TraesCS2A01G119400 chr1A 79.282 362 38 27 4921 5269 533779522 533779185 9.340000e-53 219.0
29 TraesCS2A01G119400 chr7D 76.154 520 80 28 4921 5420 549548151 549548646 3.340000e-57 233.0
30 TraesCS2A01G119400 chr6B 81.855 248 36 8 265 507 276511050 276511293 3.380000e-47 200.0
31 TraesCS2A01G119400 chr6B 83.486 109 5 6 5168 5265 655781298 655781192 7.640000e-14 89.8
32 TraesCS2A01G119400 chr6B 97.619 42 1 0 5174 5215 713863976 713864017 7.700000e-09 73.1
33 TraesCS2A01G119400 chr7B 73.876 356 48 27 5170 5510 285454997 285454672 3.530000e-17 100.0
34 TraesCS2A01G119400 chr6A 92.453 53 2 2 5165 5215 81256992 81256940 2.140000e-09 75.0
35 TraesCS2A01G119400 chr6A 75.510 147 29 7 2602 2745 614721997 614722139 1.290000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G119400 chr2A 69351089 69356627 5538 True 10229.0 10229 100.0000 1 5539 1 chr2A.!!$R1 5538
1 TraesCS2A01G119400 chr1B 611926252 611930956 4704 True 3228.5 5984 90.2175 773 5539 2 chr1B.!!$R1 4766
2 TraesCS2A01G119400 chr2D 69534261 69539416 5155 True 1429.4 4975 92.6400 266 5539 5 chr2D.!!$R3 5273
3 TraesCS2A01G119400 chr2B 105990894 105995235 4341 True 1051.2 3572 91.1592 959 5539 5 chr2B.!!$R1 4580
4 TraesCS2A01G119400 chr4A 222107593 222108176 583 False 470.0 470 81.3870 2576 3159 1 chr4A.!!$F1 583


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.039035 ACTCCCTCTCTCTCGTTGCT 59.961 55.0 0.00 0.0 0.00 3.91 F
716 722 0.237235 TGCTCGTTCATTTTCACCGC 59.763 50.0 0.00 0.0 0.00 5.68 F
1027 1063 0.105709 CCTCCTCTCCTCTCTTCCCC 60.106 65.0 0.00 0.0 0.00 4.81 F
2419 2568 0.111061 ACTGATGCAAAGCACCCAGA 59.889 50.0 21.84 0.0 43.04 3.86 F
3676 3859 0.768221 TTGGGAGGTCTGCTGGTTCT 60.768 55.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 1050 1.074850 GGGGAGGGGAAGAGAGGAG 60.075 68.421 0.00 0.0 0.0 3.69 R
2036 2174 1.683943 TGCTGGGCTTGCTATCAATC 58.316 50.000 4.24 0.0 0.0 2.67 R
2874 3046 0.324285 CCTTCAGCTCTGCTTCCACT 59.676 55.000 0.00 0.0 36.4 4.00 R
4280 4552 0.900182 TCTCTTTCTCCTGCTCGCCA 60.900 55.000 0.00 0.0 0.0 5.69 R
4945 5228 1.336240 GCTCAGTGGTGGCAATGTTTC 60.336 52.381 0.00 0.0 0.0 2.78 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.998097 TCCCCTTGCCGGATCAAG 59.002 61.111 5.05 10.52 42.23 3.02
18 19 1.615124 TCCCCTTGCCGGATCAAGA 60.615 57.895 19.82 1.70 44.61 3.02
19 20 1.204786 TCCCCTTGCCGGATCAAGAA 61.205 55.000 19.82 5.69 44.61 2.52
20 21 0.749454 CCCCTTGCCGGATCAAGAAG 60.749 60.000 19.82 12.02 44.61 2.85
21 22 0.749454 CCCTTGCCGGATCAAGAAGG 60.749 60.000 19.82 11.46 44.61 3.46
22 23 0.253044 CCTTGCCGGATCAAGAAGGA 59.747 55.000 19.82 0.00 44.61 3.36
23 24 1.661341 CTTGCCGGATCAAGAAGGAG 58.339 55.000 14.66 0.00 44.61 3.69
24 25 0.253044 TTGCCGGATCAAGAAGGAGG 59.747 55.000 5.05 0.00 0.00 4.30
25 26 0.617535 TGCCGGATCAAGAAGGAGGA 60.618 55.000 5.05 0.00 0.00 3.71
26 27 0.105778 GCCGGATCAAGAAGGAGGAG 59.894 60.000 5.05 0.00 0.00 3.69
27 28 1.781786 CCGGATCAAGAAGGAGGAGA 58.218 55.000 0.00 0.00 0.00 3.71
28 29 1.410882 CCGGATCAAGAAGGAGGAGAC 59.589 57.143 0.00 0.00 0.00 3.36
29 30 2.103373 CGGATCAAGAAGGAGGAGACA 58.897 52.381 0.00 0.00 0.00 3.41
30 31 2.697751 CGGATCAAGAAGGAGGAGACAT 59.302 50.000 0.00 0.00 0.00 3.06
31 32 3.243704 CGGATCAAGAAGGAGGAGACATC 60.244 52.174 0.00 0.00 0.00 3.06
40 41 2.818132 GGAGACATCCCCGAGCTG 59.182 66.667 0.00 0.00 40.03 4.24
41 42 2.060980 GGAGACATCCCCGAGCTGT 61.061 63.158 0.00 0.00 40.03 4.40
42 43 0.755698 GGAGACATCCCCGAGCTGTA 60.756 60.000 0.00 0.00 40.03 2.74
43 44 0.386113 GAGACATCCCCGAGCTGTAC 59.614 60.000 0.00 0.00 0.00 2.90
44 45 1.065928 GACATCCCCGAGCTGTACG 59.934 63.158 0.00 0.00 0.00 3.67
45 46 1.664321 GACATCCCCGAGCTGTACGT 61.664 60.000 0.00 0.00 0.00 3.57
46 47 1.226974 CATCCCCGAGCTGTACGTG 60.227 63.158 0.00 0.00 0.00 4.49
47 48 1.681327 ATCCCCGAGCTGTACGTGT 60.681 57.895 0.00 0.00 0.00 4.49
48 49 1.945354 ATCCCCGAGCTGTACGTGTG 61.945 60.000 0.00 0.00 0.00 3.82
49 50 2.649034 CCCGAGCTGTACGTGTGT 59.351 61.111 0.00 0.00 0.00 3.72
50 51 1.006571 CCCGAGCTGTACGTGTGTT 60.007 57.895 0.00 0.00 0.00 3.32
51 52 1.282248 CCCGAGCTGTACGTGTGTTG 61.282 60.000 0.00 0.00 0.00 3.33
52 53 0.318360 CCGAGCTGTACGTGTGTTGA 60.318 55.000 0.00 0.00 0.00 3.18
53 54 1.483316 CGAGCTGTACGTGTGTTGAA 58.517 50.000 0.00 0.00 0.00 2.69
54 55 1.189446 CGAGCTGTACGTGTGTTGAAC 59.811 52.381 0.00 0.00 0.00 3.18
55 56 1.189446 GAGCTGTACGTGTGTTGAACG 59.811 52.381 0.00 0.00 46.32 3.95
56 57 0.382636 GCTGTACGTGTGTTGAACGC 60.383 55.000 1.20 1.20 44.80 4.84
61 62 2.935955 GTGTGTTGAACGCGGAGG 59.064 61.111 12.47 0.00 0.00 4.30
62 63 2.970324 TGTGTTGAACGCGGAGGC 60.970 61.111 12.47 0.00 0.00 4.70
81 82 3.864686 CCGTCCATTCGGCGCTTG 61.865 66.667 7.64 1.44 43.96 4.01
82 83 2.813474 CGTCCATTCGGCGCTTGA 60.813 61.111 7.64 2.47 0.00 3.02
83 84 2.173669 CGTCCATTCGGCGCTTGAT 61.174 57.895 7.64 0.00 0.00 2.57
84 85 1.705337 CGTCCATTCGGCGCTTGATT 61.705 55.000 7.64 0.00 0.00 2.57
85 86 0.248215 GTCCATTCGGCGCTTGATTG 60.248 55.000 7.64 12.03 0.00 2.67
86 87 1.064621 CCATTCGGCGCTTGATTGG 59.935 57.895 21.07 21.07 32.43 3.16
87 88 1.375853 CCATTCGGCGCTTGATTGGA 61.376 55.000 26.02 6.54 38.53 3.53
88 89 0.664761 CATTCGGCGCTTGATTGGAT 59.335 50.000 7.64 0.00 0.00 3.41
89 90 0.947244 ATTCGGCGCTTGATTGGATC 59.053 50.000 7.64 0.00 0.00 3.36
90 91 0.107703 TTCGGCGCTTGATTGGATCT 60.108 50.000 7.64 0.00 0.00 2.75
91 92 0.107703 TCGGCGCTTGATTGGATCTT 60.108 50.000 7.64 0.00 0.00 2.40
92 93 0.305922 CGGCGCTTGATTGGATCTTC 59.694 55.000 7.64 0.00 0.00 2.87
93 94 0.665298 GGCGCTTGATTGGATCTTCC 59.335 55.000 7.64 0.00 36.96 3.46
94 95 0.305922 GCGCTTGATTGGATCTTCCG 59.694 55.000 0.00 0.00 40.17 4.30
95 96 0.305922 CGCTTGATTGGATCTTCCGC 59.694 55.000 0.00 0.00 40.17 5.54
96 97 0.305922 GCTTGATTGGATCTTCCGCG 59.694 55.000 0.00 0.00 40.17 6.46
97 98 1.939974 CTTGATTGGATCTTCCGCGA 58.060 50.000 8.23 0.00 40.17 5.87
98 99 2.487934 CTTGATTGGATCTTCCGCGAT 58.512 47.619 8.23 0.00 40.17 4.58
99 100 2.620251 TGATTGGATCTTCCGCGATT 57.380 45.000 8.23 0.00 40.17 3.34
100 101 2.917933 TGATTGGATCTTCCGCGATTT 58.082 42.857 8.23 0.00 40.17 2.17
101 102 2.613595 TGATTGGATCTTCCGCGATTTG 59.386 45.455 8.23 0.00 40.17 2.32
102 103 2.394930 TTGGATCTTCCGCGATTTGA 57.605 45.000 8.23 0.00 40.17 2.69
103 104 2.394930 TGGATCTTCCGCGATTTGAA 57.605 45.000 8.23 0.66 40.17 2.69
104 105 2.917933 TGGATCTTCCGCGATTTGAAT 58.082 42.857 8.23 0.00 40.17 2.57
105 106 2.872245 TGGATCTTCCGCGATTTGAATC 59.128 45.455 8.23 2.60 40.17 2.52
106 107 4.588490 TGGATCTTCCGCGATTTGAATCG 61.588 47.826 18.89 18.89 46.27 3.34
113 114 4.880748 GATTTGAATCGCCGCGAG 57.119 55.556 21.61 0.24 39.91 5.03
114 115 2.006772 GATTTGAATCGCCGCGAGT 58.993 52.632 21.61 19.26 39.91 4.18
115 116 1.205657 GATTTGAATCGCCGCGAGTA 58.794 50.000 21.61 4.01 39.91 2.59
116 117 0.928229 ATTTGAATCGCCGCGAGTAC 59.072 50.000 21.61 14.26 39.91 2.73
117 118 1.407721 TTTGAATCGCCGCGAGTACG 61.408 55.000 21.61 6.02 39.91 3.67
118 119 2.023741 GAATCGCCGCGAGTACGA 59.976 61.111 21.61 12.00 39.91 3.43
119 120 2.277756 AATCGCCGCGAGTACGAC 60.278 61.111 21.61 0.00 39.91 4.34
120 121 2.643764 GAATCGCCGCGAGTACGACT 62.644 60.000 21.61 0.18 39.91 4.18
121 122 2.643764 AATCGCCGCGAGTACGACTC 62.644 60.000 21.61 0.00 39.91 3.36
122 123 4.883300 CGCCGCGAGTACGACTCC 62.883 72.222 8.23 3.02 42.12 3.85
123 124 3.807538 GCCGCGAGTACGACTCCA 61.808 66.667 8.23 0.00 42.12 3.86
124 125 3.108343 CCGCGAGTACGACTCCAT 58.892 61.111 8.23 0.00 42.12 3.41
125 126 1.009900 CCGCGAGTACGACTCCATC 60.010 63.158 8.23 0.62 42.12 3.51
126 127 1.712018 CCGCGAGTACGACTCCATCA 61.712 60.000 8.23 0.00 42.12 3.07
127 128 0.098200 CGCGAGTACGACTCCATCAA 59.902 55.000 0.00 0.00 42.12 2.57
128 129 1.546834 GCGAGTACGACTCCATCAAC 58.453 55.000 8.73 0.00 42.12 3.18
129 130 1.798079 GCGAGTACGACTCCATCAACC 60.798 57.143 8.73 0.00 42.12 3.77
130 131 1.471287 CGAGTACGACTCCATCAACCA 59.529 52.381 8.73 0.00 42.12 3.67
131 132 2.731341 CGAGTACGACTCCATCAACCAC 60.731 54.545 8.73 0.00 42.12 4.16
132 133 1.201647 AGTACGACTCCATCAACCACG 59.798 52.381 0.00 0.00 0.00 4.94
133 134 1.068055 GTACGACTCCATCAACCACGT 60.068 52.381 0.00 0.00 36.52 4.49
134 135 0.391597 ACGACTCCATCAACCACGTT 59.608 50.000 0.00 0.00 0.00 3.99
135 136 1.068474 CGACTCCATCAACCACGTTC 58.932 55.000 0.00 0.00 0.00 3.95
136 137 1.336887 CGACTCCATCAACCACGTTCT 60.337 52.381 0.00 0.00 0.00 3.01
137 138 2.767505 GACTCCATCAACCACGTTCTT 58.232 47.619 0.00 0.00 0.00 2.52
138 139 2.480419 GACTCCATCAACCACGTTCTTG 59.520 50.000 0.00 0.00 0.00 3.02
139 140 2.158813 ACTCCATCAACCACGTTCTTGT 60.159 45.455 0.00 0.00 0.00 3.16
140 141 3.070446 ACTCCATCAACCACGTTCTTGTA 59.930 43.478 0.00 0.00 0.00 2.41
141 142 4.062293 CTCCATCAACCACGTTCTTGTAA 58.938 43.478 0.00 0.00 0.00 2.41
142 143 3.810941 TCCATCAACCACGTTCTTGTAAC 59.189 43.478 0.00 0.00 0.00 2.50
144 145 1.593933 TCAACCACGTTCTTGTAACGC 59.406 47.619 9.95 0.00 46.58 4.84
145 146 1.595794 CAACCACGTTCTTGTAACGCT 59.404 47.619 9.95 0.00 46.58 5.07
146 147 1.944032 ACCACGTTCTTGTAACGCTT 58.056 45.000 9.95 0.00 46.58 4.68
147 148 1.862827 ACCACGTTCTTGTAACGCTTC 59.137 47.619 9.95 0.00 46.58 3.86
148 149 1.193874 CCACGTTCTTGTAACGCTTCC 59.806 52.381 9.95 0.00 46.58 3.46
149 150 1.134226 ACGTTCTTGTAACGCTTCCG 58.866 50.000 9.95 0.00 46.58 4.30
150 151 0.179258 CGTTCTTGTAACGCTTCCGC 60.179 55.000 0.00 0.00 36.82 5.54
151 152 1.145803 GTTCTTGTAACGCTTCCGCT 58.854 50.000 0.00 0.00 38.22 5.52
152 153 1.529865 GTTCTTGTAACGCTTCCGCTT 59.470 47.619 0.00 0.00 38.22 4.68
153 154 2.728690 TCTTGTAACGCTTCCGCTTA 57.271 45.000 0.00 0.00 38.22 3.09
154 155 2.602878 TCTTGTAACGCTTCCGCTTAG 58.397 47.619 0.00 0.00 38.22 2.18
155 156 1.060698 CTTGTAACGCTTCCGCTTAGC 59.939 52.381 0.00 0.00 38.22 3.09
168 169 2.317530 GCTTAGCGATCTTCAAGGGT 57.682 50.000 0.00 0.00 0.00 4.34
169 170 3.454371 GCTTAGCGATCTTCAAGGGTA 57.546 47.619 0.00 0.00 0.00 3.69
170 171 3.996480 GCTTAGCGATCTTCAAGGGTAT 58.004 45.455 0.00 0.00 0.00 2.73
171 172 3.743396 GCTTAGCGATCTTCAAGGGTATG 59.257 47.826 0.00 0.00 0.00 2.39
172 173 4.501571 GCTTAGCGATCTTCAAGGGTATGA 60.502 45.833 0.00 0.00 0.00 2.15
173 174 5.601662 CTTAGCGATCTTCAAGGGTATGAA 58.398 41.667 0.00 0.00 37.70 2.57
174 175 4.696479 AGCGATCTTCAAGGGTATGAAT 57.304 40.909 0.00 0.00 38.55 2.57
175 176 5.808366 AGCGATCTTCAAGGGTATGAATA 57.192 39.130 0.00 0.00 38.55 1.75
176 177 6.365970 AGCGATCTTCAAGGGTATGAATAT 57.634 37.500 0.00 0.00 38.55 1.28
177 178 6.169094 AGCGATCTTCAAGGGTATGAATATG 58.831 40.000 0.00 0.00 38.55 1.78
178 179 6.014242 AGCGATCTTCAAGGGTATGAATATGA 60.014 38.462 0.00 0.00 38.55 2.15
179 180 6.650807 GCGATCTTCAAGGGTATGAATATGAA 59.349 38.462 0.00 0.00 38.55 2.57
180 181 7.360438 GCGATCTTCAAGGGTATGAATATGAAC 60.360 40.741 0.00 0.00 38.55 3.18
181 182 7.875041 CGATCTTCAAGGGTATGAATATGAACT 59.125 37.037 0.00 0.00 38.55 3.01
182 183 9.213799 GATCTTCAAGGGTATGAATATGAACTC 57.786 37.037 0.00 0.00 38.55 3.01
183 184 7.509546 TCTTCAAGGGTATGAATATGAACTCC 58.490 38.462 0.00 0.00 38.55 3.85
184 185 6.187727 TCAAGGGTATGAATATGAACTCCC 57.812 41.667 0.00 0.00 0.00 4.30
185 186 5.911178 TCAAGGGTATGAATATGAACTCCCT 59.089 40.000 0.00 0.00 44.83 4.20
186 187 6.043243 TCAAGGGTATGAATATGAACTCCCTC 59.957 42.308 0.00 0.00 42.51 4.30
187 188 5.731924 AGGGTATGAATATGAACTCCCTCT 58.268 41.667 0.00 0.00 39.68 3.69
188 189 5.782845 AGGGTATGAATATGAACTCCCTCTC 59.217 44.000 0.00 0.00 39.68 3.20
189 190 5.782845 GGGTATGAATATGAACTCCCTCTCT 59.217 44.000 0.00 0.00 0.00 3.10
190 191 6.071051 GGGTATGAATATGAACTCCCTCTCTC 60.071 46.154 0.00 0.00 0.00 3.20
191 192 6.723977 GGTATGAATATGAACTCCCTCTCTCT 59.276 42.308 0.00 0.00 0.00 3.10
192 193 6.916360 ATGAATATGAACTCCCTCTCTCTC 57.084 41.667 0.00 0.00 0.00 3.20
193 194 4.824537 TGAATATGAACTCCCTCTCTCTCG 59.175 45.833 0.00 0.00 0.00 4.04
194 195 2.818751 ATGAACTCCCTCTCTCTCGT 57.181 50.000 0.00 0.00 0.00 4.18
195 196 2.588464 TGAACTCCCTCTCTCTCGTT 57.412 50.000 0.00 0.00 0.00 3.85
196 197 2.163509 TGAACTCCCTCTCTCTCGTTG 58.836 52.381 0.00 0.00 0.00 4.10
197 198 0.892063 AACTCCCTCTCTCTCGTTGC 59.108 55.000 0.00 0.00 0.00 4.17
198 199 0.039035 ACTCCCTCTCTCTCGTTGCT 59.961 55.000 0.00 0.00 0.00 3.91
199 200 1.282447 ACTCCCTCTCTCTCGTTGCTA 59.718 52.381 0.00 0.00 0.00 3.49
200 201 1.946768 CTCCCTCTCTCTCGTTGCTAG 59.053 57.143 0.00 0.00 0.00 3.42
201 202 0.383949 CCCTCTCTCTCGTTGCTAGC 59.616 60.000 8.10 8.10 0.00 3.42
202 203 1.098869 CCTCTCTCTCGTTGCTAGCA 58.901 55.000 14.93 14.93 0.00 3.49
203 204 1.680735 CCTCTCTCTCGTTGCTAGCAT 59.319 52.381 20.13 0.00 0.00 3.79
204 205 2.287547 CCTCTCTCTCGTTGCTAGCATC 60.288 54.545 20.13 17.01 0.00 3.91
205 206 2.618241 CTCTCTCTCGTTGCTAGCATCT 59.382 50.000 20.13 0.00 0.00 2.90
206 207 2.616376 TCTCTCTCGTTGCTAGCATCTC 59.384 50.000 20.13 11.21 0.00 2.75
207 208 1.678627 TCTCTCGTTGCTAGCATCTCC 59.321 52.381 20.13 6.21 0.00 3.71
208 209 1.680735 CTCTCGTTGCTAGCATCTCCT 59.319 52.381 20.13 0.00 0.00 3.69
209 210 2.881513 CTCTCGTTGCTAGCATCTCCTA 59.118 50.000 20.13 0.00 0.00 2.94
210 211 3.288092 TCTCGTTGCTAGCATCTCCTAA 58.712 45.455 20.13 0.00 0.00 2.69
211 212 3.699538 TCTCGTTGCTAGCATCTCCTAAA 59.300 43.478 20.13 0.00 0.00 1.85
212 213 4.342378 TCTCGTTGCTAGCATCTCCTAAAT 59.658 41.667 20.13 0.00 0.00 1.40
213 214 5.023533 TCGTTGCTAGCATCTCCTAAATT 57.976 39.130 20.13 0.00 0.00 1.82
214 215 4.811024 TCGTTGCTAGCATCTCCTAAATTG 59.189 41.667 20.13 1.96 0.00 2.32
215 216 4.811024 CGTTGCTAGCATCTCCTAAATTGA 59.189 41.667 20.13 0.00 0.00 2.57
216 217 5.468072 CGTTGCTAGCATCTCCTAAATTGAT 59.532 40.000 20.13 0.00 0.00 2.57
217 218 6.347240 CGTTGCTAGCATCTCCTAAATTGATC 60.347 42.308 20.13 0.00 0.00 2.92
218 219 6.430962 TGCTAGCATCTCCTAAATTGATCT 57.569 37.500 14.93 0.00 0.00 2.75
219 220 6.835174 TGCTAGCATCTCCTAAATTGATCTT 58.165 36.000 14.93 0.00 0.00 2.40
220 221 6.709397 TGCTAGCATCTCCTAAATTGATCTTG 59.291 38.462 14.93 0.00 0.00 3.02
221 222 6.149142 GCTAGCATCTCCTAAATTGATCTTGG 59.851 42.308 10.63 0.00 0.00 3.61
222 223 6.011122 AGCATCTCCTAAATTGATCTTGGT 57.989 37.500 0.00 0.00 0.00 3.67
223 224 5.826737 AGCATCTCCTAAATTGATCTTGGTG 59.173 40.000 0.00 0.00 0.00 4.17
224 225 5.824624 GCATCTCCTAAATTGATCTTGGTGA 59.175 40.000 0.00 0.00 0.00 4.02
225 226 6.238593 GCATCTCCTAAATTGATCTTGGTGAC 60.239 42.308 0.00 0.00 0.00 3.67
226 227 6.373005 TCTCCTAAATTGATCTTGGTGACA 57.627 37.500 0.00 0.00 39.83 3.58
227 228 6.962182 TCTCCTAAATTGATCTTGGTGACAT 58.038 36.000 0.00 0.00 42.32 3.06
228 229 6.825213 TCTCCTAAATTGATCTTGGTGACATG 59.175 38.462 0.00 0.00 42.32 3.21
229 230 6.484288 TCCTAAATTGATCTTGGTGACATGT 58.516 36.000 0.00 0.00 42.32 3.21
230 231 7.629157 TCCTAAATTGATCTTGGTGACATGTA 58.371 34.615 0.00 0.00 42.32 2.29
231 232 7.770433 TCCTAAATTGATCTTGGTGACATGTAG 59.230 37.037 0.00 0.00 42.32 2.74
232 233 7.770433 CCTAAATTGATCTTGGTGACATGTAGA 59.230 37.037 0.00 0.00 42.32 2.59
233 234 9.166173 CTAAATTGATCTTGGTGACATGTAGAA 57.834 33.333 0.00 0.00 42.32 2.10
234 235 8.408043 AAATTGATCTTGGTGACATGTAGAAA 57.592 30.769 0.00 0.00 42.32 2.52
235 236 8.585471 AATTGATCTTGGTGACATGTAGAAAT 57.415 30.769 0.00 0.00 42.32 2.17
236 237 8.585471 ATTGATCTTGGTGACATGTAGAAATT 57.415 30.769 0.00 0.00 42.32 1.82
237 238 8.408043 TTGATCTTGGTGACATGTAGAAATTT 57.592 30.769 0.00 0.00 42.32 1.82
238 239 8.408043 TGATCTTGGTGACATGTAGAAATTTT 57.592 30.769 0.00 0.00 42.32 1.82
239 240 8.859090 TGATCTTGGTGACATGTAGAAATTTTT 58.141 29.630 0.00 0.00 42.32 1.94
261 262 8.632906 TTTTTGAATTATTACTACGTTCCCCA 57.367 30.769 0.00 0.00 0.00 4.96
262 263 8.632906 TTTTGAATTATTACTACGTTCCCCAA 57.367 30.769 0.00 0.00 0.00 4.12
263 264 7.614124 TTGAATTATTACTACGTTCCCCAAC 57.386 36.000 0.00 0.00 0.00 3.77
264 265 6.709281 TGAATTATTACTACGTTCCCCAACA 58.291 36.000 0.00 0.00 32.14 3.33
265 266 6.819649 TGAATTATTACTACGTTCCCCAACAG 59.180 38.462 0.00 0.00 32.14 3.16
266 267 5.999205 TTATTACTACGTTCCCCAACAGA 57.001 39.130 0.00 0.00 32.14 3.41
267 268 6.549433 TTATTACTACGTTCCCCAACAGAT 57.451 37.500 0.00 0.00 32.14 2.90
268 269 2.762535 ACTACGTTCCCCAACAGATG 57.237 50.000 0.00 0.00 32.14 2.90
269 270 1.338769 ACTACGTTCCCCAACAGATGC 60.339 52.381 0.00 0.00 32.14 3.91
270 271 0.981183 TACGTTCCCCAACAGATGCT 59.019 50.000 0.00 0.00 32.14 3.79
271 272 0.981183 ACGTTCCCCAACAGATGCTA 59.019 50.000 0.00 0.00 32.14 3.49
272 273 1.338769 ACGTTCCCCAACAGATGCTAC 60.339 52.381 0.00 0.00 32.14 3.58
284 285 3.447025 ATGCTACCTCCTTCGGCGC 62.447 63.158 0.00 0.00 0.00 6.53
395 396 1.485066 TGCCCGATCCTTAGTTTCTCC 59.515 52.381 0.00 0.00 0.00 3.71
429 430 2.427506 TGTGGTTTTTGTTGTTTGGGC 58.572 42.857 0.00 0.00 0.00 5.36
443 444 0.893270 TTGGGCCGTGTCATCTTTGG 60.893 55.000 0.00 0.00 0.00 3.28
464 465 0.872388 GTTGTACGGTGCCTTCTTGG 59.128 55.000 0.00 0.00 39.35 3.61
481 482 1.388547 TGGCGTTGCACTCTTCTTTT 58.611 45.000 0.00 0.00 0.00 2.27
494 495 9.985730 TGCACTCTTCTTTTTATCAAATGAAAT 57.014 25.926 3.25 0.00 36.26 2.17
507 508 6.882610 TCAAATGAAATATATGCGGCTCTT 57.117 33.333 0.00 0.00 0.00 2.85
516 517 2.789917 GCGGCTCTTCTGCATGTG 59.210 61.111 0.00 0.00 46.35 3.21
517 518 2.758089 GCGGCTCTTCTGCATGTGG 61.758 63.158 0.00 0.00 46.35 4.17
518 519 1.376424 CGGCTCTTCTGCATGTGGT 60.376 57.895 0.00 0.00 34.04 4.16
523 524 3.255642 GGCTCTTCTGCATGTGGTTAAAA 59.744 43.478 0.00 0.00 34.04 1.52
524 525 4.479619 GCTCTTCTGCATGTGGTTAAAAG 58.520 43.478 0.00 0.00 0.00 2.27
528 529 7.106439 TCTTCTGCATGTGGTTAAAAGAAAA 57.894 32.000 0.00 0.00 0.00 2.29
542 543 9.124807 GGTTAAAAGAAAATCCGTAATCAACTG 57.875 33.333 0.00 0.00 0.00 3.16
557 558 2.635915 TCAACTGGTCCGATACAAAGGT 59.364 45.455 0.00 0.00 0.00 3.50
646 651 4.515191 ACCAACTTGCACACTAGTACATTG 59.485 41.667 0.00 0.00 31.28 2.82
660 665 5.886960 AGTACATTGCAAAGACTGATTCC 57.113 39.130 8.96 0.00 0.00 3.01
662 667 2.489329 ACATTGCAAAGACTGATTCCCG 59.511 45.455 8.96 0.00 0.00 5.14
663 668 2.559698 TTGCAAAGACTGATTCCCGA 57.440 45.000 0.00 0.00 0.00 5.14
688 694 5.612725 AAAAAGGCTGATTGGTCTTTGAA 57.387 34.783 0.00 0.00 39.78 2.69
689 695 5.612725 AAAAGGCTGATTGGTCTTTGAAA 57.387 34.783 0.00 0.00 39.78 2.69
691 697 2.893489 AGGCTGATTGGTCTTTGAAACC 59.107 45.455 0.00 0.00 37.31 3.27
692 698 2.627699 GGCTGATTGGTCTTTGAAACCA 59.372 45.455 0.00 0.00 44.98 3.67
699 705 4.846779 TGGTCTTTGAAACCAACTATGC 57.153 40.909 0.00 0.00 43.72 3.14
700 706 4.469657 TGGTCTTTGAAACCAACTATGCT 58.530 39.130 0.00 0.00 43.72 3.79
701 707 4.518970 TGGTCTTTGAAACCAACTATGCTC 59.481 41.667 0.00 0.00 43.72 4.26
702 708 4.378459 GGTCTTTGAAACCAACTATGCTCG 60.378 45.833 0.00 0.00 36.75 5.03
703 709 4.213482 GTCTTTGAAACCAACTATGCTCGT 59.787 41.667 0.00 0.00 0.00 4.18
704 710 4.819630 TCTTTGAAACCAACTATGCTCGTT 59.180 37.500 0.00 0.00 0.00 3.85
705 711 4.742438 TTGAAACCAACTATGCTCGTTC 57.258 40.909 0.00 0.00 0.00 3.95
706 712 3.734463 TGAAACCAACTATGCTCGTTCA 58.266 40.909 0.00 0.00 0.00 3.18
707 713 4.323417 TGAAACCAACTATGCTCGTTCAT 58.677 39.130 0.00 0.00 0.00 2.57
708 714 4.759693 TGAAACCAACTATGCTCGTTCATT 59.240 37.500 0.00 0.00 0.00 2.57
709 715 5.240623 TGAAACCAACTATGCTCGTTCATTT 59.759 36.000 0.00 0.00 0.00 2.32
710 716 5.705609 AACCAACTATGCTCGTTCATTTT 57.294 34.783 0.00 0.00 0.00 1.82
711 717 5.296813 ACCAACTATGCTCGTTCATTTTC 57.703 39.130 0.00 0.00 0.00 2.29
712 718 4.759693 ACCAACTATGCTCGTTCATTTTCA 59.240 37.500 0.00 0.00 0.00 2.69
713 719 5.088739 CCAACTATGCTCGTTCATTTTCAC 58.911 41.667 0.00 0.00 0.00 3.18
714 720 4.946784 ACTATGCTCGTTCATTTTCACC 57.053 40.909 0.00 0.00 0.00 4.02
715 721 2.900122 ATGCTCGTTCATTTTCACCG 57.100 45.000 0.00 0.00 0.00 4.94
716 722 0.237235 TGCTCGTTCATTTTCACCGC 59.763 50.000 0.00 0.00 0.00 5.68
717 723 0.237235 GCTCGTTCATTTTCACCGCA 59.763 50.000 0.00 0.00 0.00 5.69
718 724 1.334599 GCTCGTTCATTTTCACCGCAA 60.335 47.619 0.00 0.00 0.00 4.85
719 725 2.856720 GCTCGTTCATTTTCACCGCAAA 60.857 45.455 0.00 0.00 0.00 3.68
720 726 3.367607 CTCGTTCATTTTCACCGCAAAA 58.632 40.909 0.00 0.00 0.00 2.44
721 727 3.770666 TCGTTCATTTTCACCGCAAAAA 58.229 36.364 0.00 0.00 0.00 1.94
745 751 3.895232 ACTATGCTCGTCCATTCACTT 57.105 42.857 0.00 0.00 0.00 3.16
794 806 4.887071 TGCTGGACACTGTACATTCTTTTT 59.113 37.500 0.00 0.00 0.00 1.94
840 852 3.799755 GATGGGCCACGTCGTTGC 61.800 66.667 9.28 12.74 0.00 4.17
925 958 1.562672 GGGCCCTGCTAAACCTCTCA 61.563 60.000 17.04 0.00 0.00 3.27
928 961 1.950954 GCCCTGCTAAACCTCTCAACC 60.951 57.143 0.00 0.00 0.00 3.77
929 962 1.340114 CCCTGCTAAACCTCTCAACCC 60.340 57.143 0.00 0.00 0.00 4.11
930 963 1.340114 CCTGCTAAACCTCTCAACCCC 60.340 57.143 0.00 0.00 0.00 4.95
931 964 1.630878 CTGCTAAACCTCTCAACCCCT 59.369 52.381 0.00 0.00 0.00 4.79
932 965 1.351017 TGCTAAACCTCTCAACCCCTG 59.649 52.381 0.00 0.00 0.00 4.45
933 966 1.950954 GCTAAACCTCTCAACCCCTGC 60.951 57.143 0.00 0.00 0.00 4.85
934 967 0.696501 TAAACCTCTCAACCCCTGCC 59.303 55.000 0.00 0.00 0.00 4.85
935 968 2.081585 AAACCTCTCAACCCCTGCCC 62.082 60.000 0.00 0.00 0.00 5.36
936 969 4.101448 CCTCTCAACCCCTGCCCG 62.101 72.222 0.00 0.00 0.00 6.13
956 992 1.585006 CCGCTCCGCCGATATAAGT 59.415 57.895 0.00 0.00 0.00 2.24
1027 1063 0.105709 CCTCCTCTCCTCTCTTCCCC 60.106 65.000 0.00 0.00 0.00 4.81
1028 1064 0.933700 CTCCTCTCCTCTCTTCCCCT 59.066 60.000 0.00 0.00 0.00 4.79
1029 1065 0.930726 TCCTCTCCTCTCTTCCCCTC 59.069 60.000 0.00 0.00 0.00 4.30
1030 1066 0.105709 CCTCTCCTCTCTTCCCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
1031 1067 0.105709 CTCTCCTCTCTTCCCCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
1032 1068 1.074850 CTCCTCTCTTCCCCTCCCC 60.075 68.421 0.00 0.00 0.00 4.81
1033 1069 2.040359 CCTCTCTTCCCCTCCCCC 60.040 72.222 0.00 0.00 0.00 5.40
1101 1142 6.313324 GTCCTCCTATACACAGGTAAGGTAT 58.687 44.000 0.00 0.00 36.99 2.73
1153 1194 4.888325 CGGCCTCCCATCTCCCCT 62.888 72.222 0.00 0.00 0.00 4.79
1154 1195 2.621115 GGCCTCCCATCTCCCCTA 59.379 66.667 0.00 0.00 0.00 3.53
1211 1256 4.659874 CGTTCGTGCCGTGGTTGC 62.660 66.667 0.00 0.00 0.00 4.17
1325 1370 0.179137 CAGCAGCGTCGAGGTATTGA 60.179 55.000 7.01 0.00 0.00 2.57
1326 1371 0.530744 AGCAGCGTCGAGGTATTGAA 59.469 50.000 7.01 0.00 0.00 2.69
1387 1433 1.423845 CGCGTATGGTCAAAGGTGC 59.576 57.895 0.00 0.00 0.00 5.01
1466 1518 0.878961 ACTTTGCCTCGTCGGACAAC 60.879 55.000 9.10 0.00 31.50 3.32
1472 1524 2.355363 TCGTCGGACAACGCAAGG 60.355 61.111 9.10 0.00 42.31 3.61
1484 1536 1.750399 CGCAAGGAAGGTGGGATGG 60.750 63.158 0.00 0.00 0.00 3.51
1513 1568 4.867608 GGCTCTGTCTTTGAGTTACTCATC 59.132 45.833 16.28 7.89 40.39 2.92
1566 1672 5.585047 GGTTCCACTGCCTTGTTAGTTATAG 59.415 44.000 0.00 0.00 0.00 1.31
1577 1683 6.979238 CCTTGTTAGTTATAGTCTACTGTGGC 59.021 42.308 0.00 0.00 0.00 5.01
1597 1703 5.126061 GTGGCTGTTTTGGAATCAGTCATAT 59.874 40.000 8.68 0.00 43.81 1.78
1598 1704 6.318648 GTGGCTGTTTTGGAATCAGTCATATA 59.681 38.462 8.68 0.00 43.81 0.86
1653 1759 3.848272 TTATTGTGGTAGCTGCTTTGC 57.152 42.857 7.79 0.00 0.00 3.68
1684 1790 2.963599 TCTTTACTGGGTCCCCAAAC 57.036 50.000 5.13 0.00 46.63 2.93
1722 1828 6.777213 TTACAGTTTTTCCAAGCCAGTTAA 57.223 33.333 0.00 0.00 0.00 2.01
1765 1871 8.053963 AGTATACTGTTGTACTAGATGGTCTGT 58.946 37.037 4.10 0.00 28.36 3.41
1766 1872 5.392767 ACTGTTGTACTAGATGGTCTGTG 57.607 43.478 0.00 0.00 0.00 3.66
1768 1874 6.008331 ACTGTTGTACTAGATGGTCTGTGTA 58.992 40.000 0.00 0.00 0.00 2.90
1770 1876 5.417894 TGTTGTACTAGATGGTCTGTGTAGG 59.582 44.000 0.00 0.00 0.00 3.18
1771 1877 5.188988 TGTACTAGATGGTCTGTGTAGGT 57.811 43.478 0.00 0.00 0.00 3.08
1788 1923 5.351740 GTGTAGGTTTAATGTGAGAGGCTTC 59.648 44.000 0.00 0.00 0.00 3.86
1796 1931 0.235926 GTGAGAGGCTTCGTTTGTGC 59.764 55.000 0.00 0.00 0.00 4.57
1804 1939 1.262151 GCTTCGTTTGTGCGTCCTTTA 59.738 47.619 0.00 0.00 0.00 1.85
1816 1953 6.781138 TGTGCGTCCTTTATGATGTATTTTC 58.219 36.000 0.00 0.00 0.00 2.29
1826 1963 9.507280 CTTTATGATGTATTTTCGCATGTTTCT 57.493 29.630 0.00 0.00 0.00 2.52
1861 1998 4.943142 ATGGTGCTTTGTTGTTTTGTTG 57.057 36.364 0.00 0.00 0.00 3.33
1918 2055 7.696992 TTGTTGGTTCATATTAAGGGTTCTC 57.303 36.000 0.00 0.00 0.00 2.87
1932 2069 3.910627 AGGGTTCTCTCCTGTATTGTTGT 59.089 43.478 0.00 0.00 32.53 3.32
1934 2071 4.695928 GGGTTCTCTCCTGTATTGTTGTTC 59.304 45.833 0.00 0.00 0.00 3.18
2117 2255 1.547372 ACATTGGCTGTTGCTGATTCC 59.453 47.619 0.00 0.00 39.59 3.01
2196 2334 4.863152 TCACATGCGTTGATCAGTATTG 57.137 40.909 0.00 0.00 0.00 1.90
2205 2343 8.432110 TGCGTTGATCAGTATTGTTGTATAAT 57.568 30.769 0.00 0.00 0.00 1.28
2206 2344 9.535878 TGCGTTGATCAGTATTGTTGTATAATA 57.464 29.630 0.00 0.00 0.00 0.98
2419 2568 0.111061 ACTGATGCAAAGCACCCAGA 59.889 50.000 21.84 0.00 43.04 3.86
2482 2632 5.409826 GCTCACTGTTACAAACTATGCTCTT 59.590 40.000 0.00 0.00 0.00 2.85
2483 2633 6.401581 GCTCACTGTTACAAACTATGCTCTTC 60.402 42.308 0.00 0.00 0.00 2.87
2484 2634 6.759272 TCACTGTTACAAACTATGCTCTTCT 58.241 36.000 0.00 0.00 0.00 2.85
2485 2635 7.892609 TCACTGTTACAAACTATGCTCTTCTA 58.107 34.615 0.00 0.00 0.00 2.10
2535 2685 1.334869 CTTTTGGCTGCGTGTTCTTCT 59.665 47.619 0.00 0.00 0.00 2.85
2865 3037 7.986085 TTGCTTCTGCTTCTTTTAGATACTT 57.014 32.000 0.00 0.00 40.48 2.24
2874 3046 8.375506 TGCTTCTTTTAGATACTTCCAGAAGAA 58.624 33.333 14.19 0.00 40.79 2.52
3224 3400 5.983720 TCCTCTTTCTTTGACTAGTTGAACG 59.016 40.000 0.00 0.00 0.00 3.95
3426 3609 2.265467 TAATTGGACAGGCGGCTCCC 62.265 60.000 9.32 14.34 34.51 4.30
3571 3754 1.398390 CCGTGCTGTAGAGGCAATTTC 59.602 52.381 0.00 0.00 41.54 2.17
3580 3763 2.154462 AGAGGCAATTTCTTGACACCG 58.846 47.619 0.00 0.00 43.39 4.94
3676 3859 0.768221 TTGGGAGGTCTGCTGGTTCT 60.768 55.000 0.00 0.00 0.00 3.01
4280 4552 1.684386 CGGAGGCAGCTGAAGAGGAT 61.684 60.000 20.43 0.00 0.00 3.24
4343 4615 0.461961 CCAAGGACATCGAGGAGACC 59.538 60.000 3.06 4.35 0.00 3.85
4346 4618 2.134933 GGACATCGAGGAGACCCCC 61.135 68.421 3.06 0.00 34.66 5.40
4469 4741 3.054802 AGAAGAAATTGGACGCTGAGGAT 60.055 43.478 0.00 0.00 0.00 3.24
4472 4744 0.035152 AATTGGACGCTGAGGATGCA 60.035 50.000 0.00 0.00 0.00 3.96
4589 4864 6.098266 TGTGGTGTAATGCTGTACTATCATCT 59.902 38.462 0.00 0.00 0.00 2.90
4609 4884 6.550854 TCATCTTTGTCTGAAAGTTTTGGGAT 59.449 34.615 0.00 0.00 33.76 3.85
4692 4967 0.181114 ACTTGCAAGTGGTGAGCAGA 59.819 50.000 30.66 0.00 39.72 4.26
4844 5124 1.073763 CAGGGATGGGAACAACACTCA 59.926 52.381 0.00 0.00 44.62 3.41
4852 5132 5.304686 TGGGAACAACACTCAACTAGATT 57.695 39.130 0.00 0.00 37.44 2.40
4863 5143 6.751888 ACACTCAACTAGATTTTTGTTGTTGC 59.248 34.615 0.00 0.00 41.05 4.17
4894 5174 4.094294 GCACAACAAACACTCAACTAGACA 59.906 41.667 0.00 0.00 0.00 3.41
4919 5199 2.442212 TCTTGTTGTTGCATGCATGG 57.558 45.000 27.34 10.03 0.00 3.66
4943 5226 2.250031 TGCTGGCAGAATTGAACCAAT 58.750 42.857 20.86 0.00 35.39 3.16
4944 5227 2.633967 TGCTGGCAGAATTGAACCAATT 59.366 40.909 20.86 4.77 45.25 2.32
4945 5228 2.997986 GCTGGCAGAATTGAACCAATTG 59.002 45.455 20.86 0.00 43.05 2.32
5007 5301 2.495270 TGGCTGTTCTTTGTTTGCTTCA 59.505 40.909 0.00 0.00 0.00 3.02
5073 5367 6.294176 GGGTATTGATGCATAATCCAACACTC 60.294 42.308 0.00 0.00 34.00 3.51
5108 5402 1.602851 CTTGAGCTGCCTGTATGATGC 59.397 52.381 0.00 0.00 0.00 3.91
5139 5433 7.230849 TGCAACTGAATCCATTAGAAAACAT 57.769 32.000 0.00 0.00 0.00 2.71
5140 5434 7.669427 TGCAACTGAATCCATTAGAAAACATT 58.331 30.769 0.00 0.00 0.00 2.71
5141 5435 8.149647 TGCAACTGAATCCATTAGAAAACATTT 58.850 29.630 0.00 0.00 0.00 2.32
5142 5436 8.992073 GCAACTGAATCCATTAGAAAACATTTT 58.008 29.630 0.00 0.00 0.00 1.82
5166 5460 5.323371 TCAGTTGTTTTGTTTCTTCCTGG 57.677 39.130 0.00 0.00 0.00 4.45
5170 5464 5.931724 AGTTGTTTTGTTTCTTCCTGGTTTG 59.068 36.000 0.00 0.00 0.00 2.93
5215 5511 5.182001 CCTTGAAACAATCTTAGGACACCTG 59.818 44.000 0.00 0.00 34.41 4.00
5216 5512 4.072131 TGAAACAATCTTAGGACACCTGC 58.928 43.478 0.00 0.00 34.61 4.85
5217 5513 2.789409 ACAATCTTAGGACACCTGCC 57.211 50.000 0.00 0.00 34.61 4.85
5218 5514 2.269940 ACAATCTTAGGACACCTGCCT 58.730 47.619 0.00 0.00 39.56 4.75
5365 5765 6.022163 AGCCAATGATGATTAGCTTTATGC 57.978 37.500 0.00 0.00 33.27 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.204786 TTCTTGATCCGGCAAGGGGA 61.205 55.000 18.28 5.92 44.14 4.81
1 2 0.749454 CTTCTTGATCCGGCAAGGGG 60.749 60.000 18.28 9.88 44.14 4.79
2 3 0.749454 CCTTCTTGATCCGGCAAGGG 60.749 60.000 18.28 10.85 44.14 3.95
3 4 0.253044 TCCTTCTTGATCCGGCAAGG 59.747 55.000 18.28 11.94 44.14 3.61
6 7 0.617535 TCCTCCTTCTTGATCCGGCA 60.618 55.000 0.00 0.00 0.00 5.69
8 9 1.410882 GTCTCCTCCTTCTTGATCCGG 59.589 57.143 0.00 0.00 0.00 5.14
9 10 2.103373 TGTCTCCTCCTTCTTGATCCG 58.897 52.381 0.00 0.00 0.00 4.18
10 11 3.070878 GGATGTCTCCTCCTTCTTGATCC 59.929 52.174 0.00 0.00 38.65 3.36
11 12 3.070878 GGGATGTCTCCTCCTTCTTGATC 59.929 52.174 0.00 0.00 41.74 2.92
12 13 3.044894 GGGATGTCTCCTCCTTCTTGAT 58.955 50.000 0.00 0.00 41.74 2.57
13 14 2.472029 GGGATGTCTCCTCCTTCTTGA 58.528 52.381 0.00 0.00 41.74 3.02
14 15 1.488393 GGGGATGTCTCCTCCTTCTTG 59.512 57.143 0.00 0.00 41.74 3.02
15 16 1.886422 GGGGATGTCTCCTCCTTCTT 58.114 55.000 0.00 0.00 41.74 2.52
16 17 0.397816 CGGGGATGTCTCCTCCTTCT 60.398 60.000 0.00 0.00 39.07 2.85
17 18 0.397254 TCGGGGATGTCTCCTCCTTC 60.397 60.000 0.00 0.00 39.07 3.46
18 19 0.397816 CTCGGGGATGTCTCCTCCTT 60.398 60.000 0.00 0.00 39.07 3.36
19 20 1.231641 CTCGGGGATGTCTCCTCCT 59.768 63.158 0.00 0.00 39.07 3.69
20 21 2.503382 GCTCGGGGATGTCTCCTCC 61.503 68.421 0.00 0.00 39.07 4.30
21 22 1.456705 AGCTCGGGGATGTCTCCTC 60.457 63.158 0.00 0.00 41.74 3.71
22 23 1.760086 CAGCTCGGGGATGTCTCCT 60.760 63.158 0.00 0.00 41.74 3.69
23 24 0.755698 TACAGCTCGGGGATGTCTCC 60.756 60.000 0.14 0.00 44.02 3.71
24 25 0.386113 GTACAGCTCGGGGATGTCTC 59.614 60.000 0.14 0.00 44.02 3.36
25 26 1.384989 CGTACAGCTCGGGGATGTCT 61.385 60.000 0.14 0.00 44.02 3.41
26 27 1.065928 CGTACAGCTCGGGGATGTC 59.934 63.158 0.14 0.00 44.02 3.06
27 28 1.681327 ACGTACAGCTCGGGGATGT 60.681 57.895 3.48 3.48 46.91 3.06
28 29 1.226974 CACGTACAGCTCGGGGATG 60.227 63.158 0.00 0.00 37.36 3.51
29 30 1.681327 ACACGTACAGCTCGGGGAT 60.681 57.895 0.33 0.00 35.91 3.85
30 31 2.282674 ACACGTACAGCTCGGGGA 60.283 61.111 0.33 0.00 35.91 4.81
31 32 2.126071 CACACGTACAGCTCGGGG 60.126 66.667 0.33 0.00 35.91 5.73
32 33 1.006571 AACACACGTACAGCTCGGG 60.007 57.895 0.00 0.00 37.74 5.14
33 34 0.318360 TCAACACACGTACAGCTCGG 60.318 55.000 0.00 0.00 0.00 4.63
34 35 1.189446 GTTCAACACACGTACAGCTCG 59.811 52.381 0.00 0.00 0.00 5.03
35 36 1.189446 CGTTCAACACACGTACAGCTC 59.811 52.381 0.00 0.00 32.80 4.09
36 37 1.205657 CGTTCAACACACGTACAGCT 58.794 50.000 0.00 0.00 32.80 4.24
37 38 0.382636 GCGTTCAACACACGTACAGC 60.383 55.000 0.00 0.00 39.92 4.40
38 39 0.111878 CGCGTTCAACACACGTACAG 60.112 55.000 0.00 0.00 39.92 2.74
39 40 1.481019 CCGCGTTCAACACACGTACA 61.481 55.000 4.92 0.00 39.92 2.90
40 41 1.199859 CCGCGTTCAACACACGTAC 59.800 57.895 4.92 0.00 39.92 3.67
41 42 0.935831 CTCCGCGTTCAACACACGTA 60.936 55.000 4.92 0.00 39.92 3.57
42 43 2.202770 TCCGCGTTCAACACACGT 60.203 55.556 4.92 0.00 39.92 4.49
43 44 2.544359 CTCCGCGTTCAACACACG 59.456 61.111 4.92 0.00 40.75 4.49
44 45 2.935955 CCTCCGCGTTCAACACAC 59.064 61.111 4.92 0.00 0.00 3.82
45 46 2.970324 GCCTCCGCGTTCAACACA 60.970 61.111 4.92 0.00 0.00 3.72
65 66 1.705337 AATCAAGCGCCGAATGGACG 61.705 55.000 2.29 0.00 37.49 4.79
66 67 0.248215 CAATCAAGCGCCGAATGGAC 60.248 55.000 2.29 0.00 37.49 4.02
67 68 1.375853 CCAATCAAGCGCCGAATGGA 61.376 55.000 21.44 0.00 35.77 3.41
68 69 1.064621 CCAATCAAGCGCCGAATGG 59.935 57.895 15.01 15.01 38.77 3.16
69 70 0.664761 ATCCAATCAAGCGCCGAATG 59.335 50.000 2.29 4.48 0.00 2.67
70 71 0.947244 GATCCAATCAAGCGCCGAAT 59.053 50.000 2.29 0.00 0.00 3.34
71 72 0.107703 AGATCCAATCAAGCGCCGAA 60.108 50.000 2.29 0.00 0.00 4.30
72 73 0.107703 AAGATCCAATCAAGCGCCGA 60.108 50.000 2.29 0.31 0.00 5.54
73 74 0.305922 GAAGATCCAATCAAGCGCCG 59.694 55.000 2.29 0.00 0.00 6.46
74 75 0.665298 GGAAGATCCAATCAAGCGCC 59.335 55.000 2.29 0.00 36.28 6.53
75 76 0.305922 CGGAAGATCCAATCAAGCGC 59.694 55.000 0.00 0.00 35.91 5.92
76 77 0.305922 GCGGAAGATCCAATCAAGCG 59.694 55.000 0.00 0.00 35.91 4.68
77 78 0.305922 CGCGGAAGATCCAATCAAGC 59.694 55.000 0.00 0.00 35.91 4.01
78 79 1.939974 TCGCGGAAGATCCAATCAAG 58.060 50.000 6.13 0.00 35.91 3.02
79 80 2.620251 ATCGCGGAAGATCCAATCAA 57.380 45.000 6.13 0.00 35.91 2.57
80 81 2.613595 CAAATCGCGGAAGATCCAATCA 59.386 45.455 6.13 0.00 35.91 2.57
81 82 2.872245 TCAAATCGCGGAAGATCCAATC 59.128 45.455 6.13 0.00 35.91 2.67
82 83 2.917933 TCAAATCGCGGAAGATCCAAT 58.082 42.857 6.13 0.00 35.91 3.16
83 84 2.394930 TCAAATCGCGGAAGATCCAA 57.605 45.000 6.13 0.00 35.91 3.53
84 85 2.394930 TTCAAATCGCGGAAGATCCA 57.605 45.000 6.13 0.00 35.91 3.41
85 86 3.528009 GATTCAAATCGCGGAAGATCC 57.472 47.619 6.13 0.00 0.00 3.36
96 97 1.071436 GTACTCGCGGCGATTCAAATC 60.071 52.381 26.60 8.52 34.61 2.17
97 98 0.928229 GTACTCGCGGCGATTCAAAT 59.072 50.000 26.60 9.68 34.61 2.32
98 99 1.407721 CGTACTCGCGGCGATTCAAA 61.408 55.000 26.60 2.28 34.61 2.69
99 100 1.870458 CGTACTCGCGGCGATTCAA 60.870 57.895 26.60 8.68 34.61 2.69
100 101 2.277692 CGTACTCGCGGCGATTCA 60.278 61.111 26.60 10.93 34.61 2.57
101 102 2.023741 TCGTACTCGCGGCGATTC 59.976 61.111 26.60 16.73 34.61 2.52
102 103 2.277756 GTCGTACTCGCGGCGATT 60.278 61.111 26.60 22.48 37.00 3.34
103 104 3.165670 GAGTCGTACTCGCGGCGAT 62.166 63.158 26.60 17.43 41.85 4.58
104 105 3.857854 GAGTCGTACTCGCGGCGA 61.858 66.667 24.84 24.84 41.85 5.54
105 106 4.883300 GGAGTCGTACTCGCGGCG 62.883 72.222 17.70 17.70 45.96 6.46
106 107 2.985486 GATGGAGTCGTACTCGCGGC 62.985 65.000 6.13 0.00 45.96 6.53
107 108 1.009900 GATGGAGTCGTACTCGCGG 60.010 63.158 6.13 0.00 45.96 6.46
108 109 0.098200 TTGATGGAGTCGTACTCGCG 59.902 55.000 0.00 0.00 45.96 5.87
109 110 1.546834 GTTGATGGAGTCGTACTCGC 58.453 55.000 8.33 3.96 45.96 5.03
110 111 1.471287 TGGTTGATGGAGTCGTACTCG 59.529 52.381 8.33 0.00 45.96 4.18
111 112 2.731341 CGTGGTTGATGGAGTCGTACTC 60.731 54.545 6.50 6.50 44.32 2.59
112 113 1.201647 CGTGGTTGATGGAGTCGTACT 59.798 52.381 0.00 0.00 0.00 2.73
113 114 1.068055 ACGTGGTTGATGGAGTCGTAC 60.068 52.381 0.00 0.00 0.00 3.67
114 115 1.250328 ACGTGGTTGATGGAGTCGTA 58.750 50.000 0.00 0.00 0.00 3.43
115 116 0.391597 AACGTGGTTGATGGAGTCGT 59.608 50.000 0.00 0.00 0.00 4.34
116 117 1.068474 GAACGTGGTTGATGGAGTCG 58.932 55.000 0.00 0.00 0.00 4.18
117 118 2.457366 AGAACGTGGTTGATGGAGTC 57.543 50.000 0.00 0.00 0.00 3.36
118 119 2.158813 ACAAGAACGTGGTTGATGGAGT 60.159 45.455 15.17 0.00 0.00 3.85
119 120 2.494059 ACAAGAACGTGGTTGATGGAG 58.506 47.619 15.17 0.00 0.00 3.86
120 121 2.631160 ACAAGAACGTGGTTGATGGA 57.369 45.000 15.17 0.00 0.00 3.41
121 122 3.363575 CGTTACAAGAACGTGGTTGATGG 60.364 47.826 15.17 0.96 38.69 3.51
122 123 3.794536 CGTTACAAGAACGTGGTTGATG 58.205 45.455 15.17 0.81 38.69 3.07
123 124 2.222445 GCGTTACAAGAACGTGGTTGAT 59.778 45.455 15.17 4.53 44.69 2.57
124 125 1.593933 GCGTTACAAGAACGTGGTTGA 59.406 47.619 15.17 0.00 44.69 3.18
125 126 1.595794 AGCGTTACAAGAACGTGGTTG 59.404 47.619 11.07 8.27 44.69 3.77
126 127 1.944032 AGCGTTACAAGAACGTGGTT 58.056 45.000 11.07 0.00 44.69 3.67
127 128 1.862827 GAAGCGTTACAAGAACGTGGT 59.137 47.619 11.07 0.00 44.69 4.16
128 129 1.193874 GGAAGCGTTACAAGAACGTGG 59.806 52.381 11.07 0.00 44.69 4.94
129 130 1.136721 CGGAAGCGTTACAAGAACGTG 60.137 52.381 11.07 0.00 44.69 4.49
130 131 1.134226 CGGAAGCGTTACAAGAACGT 58.866 50.000 11.07 0.00 44.69 3.99
131 132 3.921081 CGGAAGCGTTACAAGAACG 57.079 52.632 5.50 5.50 45.56 3.95
149 150 2.317530 ACCCTTGAAGATCGCTAAGC 57.682 50.000 0.00 0.00 0.00 3.09
150 151 5.201713 TCATACCCTTGAAGATCGCTAAG 57.798 43.478 0.00 0.00 0.00 2.18
151 152 5.607939 TTCATACCCTTGAAGATCGCTAA 57.392 39.130 0.00 0.00 32.07 3.09
152 153 5.808366 ATTCATACCCTTGAAGATCGCTA 57.192 39.130 0.00 0.00 38.90 4.26
153 154 4.696479 ATTCATACCCTTGAAGATCGCT 57.304 40.909 0.00 0.00 38.90 4.93
154 155 6.166279 TCATATTCATACCCTTGAAGATCGC 58.834 40.000 0.00 0.00 35.85 4.58
155 156 7.875041 AGTTCATATTCATACCCTTGAAGATCG 59.125 37.037 0.00 0.00 35.85 3.69
156 157 9.213799 GAGTTCATATTCATACCCTTGAAGATC 57.786 37.037 0.00 0.00 35.85 2.75
157 158 8.160106 GGAGTTCATATTCATACCCTTGAAGAT 58.840 37.037 0.00 0.00 37.89 2.40
158 159 7.420214 GGGAGTTCATATTCATACCCTTGAAGA 60.420 40.741 0.00 0.00 38.90 2.87
159 160 6.712547 GGGAGTTCATATTCATACCCTTGAAG 59.287 42.308 0.00 0.00 38.90 3.02
160 161 6.389869 AGGGAGTTCATATTCATACCCTTGAA 59.610 38.462 0.00 0.00 43.06 2.69
161 162 5.911178 AGGGAGTTCATATTCATACCCTTGA 59.089 40.000 0.00 0.00 43.06 3.02
162 163 6.043706 AGAGGGAGTTCATATTCATACCCTTG 59.956 42.308 0.00 0.00 45.19 3.61
163 164 6.153924 AGAGGGAGTTCATATTCATACCCTT 58.846 40.000 0.00 0.00 45.19 3.95
165 166 5.782845 AGAGAGGGAGTTCATATTCATACCC 59.217 44.000 0.00 0.00 36.67 3.69
166 167 6.723977 AGAGAGAGGGAGTTCATATTCATACC 59.276 42.308 0.00 0.00 0.00 2.73
167 168 7.361713 CGAGAGAGAGGGAGTTCATATTCATAC 60.362 44.444 0.00 0.00 0.00 2.39
168 169 6.657117 CGAGAGAGAGGGAGTTCATATTCATA 59.343 42.308 0.00 0.00 0.00 2.15
169 170 5.476599 CGAGAGAGAGGGAGTTCATATTCAT 59.523 44.000 0.00 0.00 0.00 2.57
170 171 4.824537 CGAGAGAGAGGGAGTTCATATTCA 59.175 45.833 0.00 0.00 0.00 2.57
171 172 4.825085 ACGAGAGAGAGGGAGTTCATATTC 59.175 45.833 0.00 0.00 0.00 1.75
172 173 4.798882 ACGAGAGAGAGGGAGTTCATATT 58.201 43.478 0.00 0.00 0.00 1.28
173 174 4.447138 ACGAGAGAGAGGGAGTTCATAT 57.553 45.455 0.00 0.00 0.00 1.78
174 175 3.935818 ACGAGAGAGAGGGAGTTCATA 57.064 47.619 0.00 0.00 0.00 2.15
175 176 2.757868 CAACGAGAGAGAGGGAGTTCAT 59.242 50.000 0.00 0.00 0.00 2.57
176 177 2.163509 CAACGAGAGAGAGGGAGTTCA 58.836 52.381 0.00 0.00 0.00 3.18
177 178 1.135228 GCAACGAGAGAGAGGGAGTTC 60.135 57.143 0.00 0.00 0.00 3.01
178 179 0.892063 GCAACGAGAGAGAGGGAGTT 59.108 55.000 0.00 0.00 0.00 3.01
179 180 0.039035 AGCAACGAGAGAGAGGGAGT 59.961 55.000 0.00 0.00 0.00 3.85
180 181 1.946768 CTAGCAACGAGAGAGAGGGAG 59.053 57.143 0.00 0.00 0.00 4.30
181 182 2.019668 GCTAGCAACGAGAGAGAGGGA 61.020 57.143 10.63 0.00 0.00 4.20
182 183 0.383949 GCTAGCAACGAGAGAGAGGG 59.616 60.000 10.63 0.00 0.00 4.30
183 184 1.098869 TGCTAGCAACGAGAGAGAGG 58.901 55.000 16.84 0.00 0.00 3.69
184 185 2.618241 AGATGCTAGCAACGAGAGAGAG 59.382 50.000 23.54 0.00 0.00 3.20
185 186 2.616376 GAGATGCTAGCAACGAGAGAGA 59.384 50.000 23.54 0.00 0.00 3.10
186 187 2.287547 GGAGATGCTAGCAACGAGAGAG 60.288 54.545 23.54 0.00 0.00 3.20
187 188 1.678627 GGAGATGCTAGCAACGAGAGA 59.321 52.381 23.54 0.00 0.00 3.10
188 189 1.680735 AGGAGATGCTAGCAACGAGAG 59.319 52.381 23.54 0.00 0.00 3.20
189 190 1.769026 AGGAGATGCTAGCAACGAGA 58.231 50.000 23.54 0.00 0.00 4.04
190 191 3.717400 TTAGGAGATGCTAGCAACGAG 57.283 47.619 23.54 0.00 0.00 4.18
191 192 4.672587 ATTTAGGAGATGCTAGCAACGA 57.327 40.909 23.54 6.17 0.00 3.85
192 193 4.811024 TCAATTTAGGAGATGCTAGCAACG 59.189 41.667 23.54 3.00 0.00 4.10
193 194 6.709846 AGATCAATTTAGGAGATGCTAGCAAC 59.290 38.462 23.54 19.83 0.00 4.17
194 195 6.835174 AGATCAATTTAGGAGATGCTAGCAA 58.165 36.000 23.54 5.32 0.00 3.91
195 196 6.430962 AGATCAATTTAGGAGATGCTAGCA 57.569 37.500 21.85 21.85 0.00 3.49
196 197 6.149142 CCAAGATCAATTTAGGAGATGCTAGC 59.851 42.308 8.10 8.10 0.00 3.42
197 198 7.172875 CACCAAGATCAATTTAGGAGATGCTAG 59.827 40.741 0.00 0.00 0.00 3.42
198 199 6.994496 CACCAAGATCAATTTAGGAGATGCTA 59.006 38.462 0.00 0.00 0.00 3.49
199 200 5.826737 CACCAAGATCAATTTAGGAGATGCT 59.173 40.000 0.00 0.00 0.00 3.79
200 201 5.824624 TCACCAAGATCAATTTAGGAGATGC 59.175 40.000 0.00 0.00 0.00 3.91
201 202 6.825213 TGTCACCAAGATCAATTTAGGAGATG 59.175 38.462 0.00 0.00 0.00 2.90
202 203 6.962182 TGTCACCAAGATCAATTTAGGAGAT 58.038 36.000 0.00 0.00 0.00 2.75
203 204 6.373005 TGTCACCAAGATCAATTTAGGAGA 57.627 37.500 0.00 0.00 0.00 3.71
204 205 6.600822 ACATGTCACCAAGATCAATTTAGGAG 59.399 38.462 0.00 0.00 0.00 3.69
205 206 6.484288 ACATGTCACCAAGATCAATTTAGGA 58.516 36.000 0.00 0.00 0.00 2.94
206 207 6.764308 ACATGTCACCAAGATCAATTTAGG 57.236 37.500 0.00 0.00 0.00 2.69
207 208 8.722480 TCTACATGTCACCAAGATCAATTTAG 57.278 34.615 0.00 0.00 0.00 1.85
208 209 9.513906 TTTCTACATGTCACCAAGATCAATTTA 57.486 29.630 0.00 0.00 0.00 1.40
209 210 8.408043 TTTCTACATGTCACCAAGATCAATTT 57.592 30.769 0.00 0.00 0.00 1.82
210 211 8.585471 ATTTCTACATGTCACCAAGATCAATT 57.415 30.769 0.00 0.00 0.00 2.32
211 212 8.585471 AATTTCTACATGTCACCAAGATCAAT 57.415 30.769 0.00 0.00 0.00 2.57
212 213 8.408043 AAATTTCTACATGTCACCAAGATCAA 57.592 30.769 0.00 0.00 0.00 2.57
213 214 8.408043 AAAATTTCTACATGTCACCAAGATCA 57.592 30.769 0.00 0.00 0.00 2.92
236 237 8.632906 TGGGGAACGTAGTAATAATTCAAAAA 57.367 30.769 0.00 0.00 45.00 1.94
237 238 8.513774 GTTGGGGAACGTAGTAATAATTCAAAA 58.486 33.333 0.00 0.00 45.00 2.44
238 239 7.664731 TGTTGGGGAACGTAGTAATAATTCAAA 59.335 33.333 0.00 0.00 45.00 2.69
239 240 7.166851 TGTTGGGGAACGTAGTAATAATTCAA 58.833 34.615 0.00 0.00 45.00 2.69
240 241 6.709281 TGTTGGGGAACGTAGTAATAATTCA 58.291 36.000 0.00 0.00 45.00 2.57
241 242 7.043565 TCTGTTGGGGAACGTAGTAATAATTC 58.956 38.462 0.00 0.00 45.00 2.17
242 243 6.949715 TCTGTTGGGGAACGTAGTAATAATT 58.050 36.000 0.00 0.00 45.00 1.40
243 244 6.549433 TCTGTTGGGGAACGTAGTAATAAT 57.451 37.500 0.00 0.00 45.00 1.28
244 245 5.999205 TCTGTTGGGGAACGTAGTAATAA 57.001 39.130 0.00 0.00 45.00 1.40
245 246 5.682990 GCATCTGTTGGGGAACGTAGTAATA 60.683 44.000 0.00 0.00 45.00 0.98
246 247 4.766375 CATCTGTTGGGGAACGTAGTAAT 58.234 43.478 0.00 0.00 45.00 1.89
247 248 3.618019 GCATCTGTTGGGGAACGTAGTAA 60.618 47.826 0.00 0.00 45.00 2.24
248 249 2.093869 GCATCTGTTGGGGAACGTAGTA 60.094 50.000 0.00 0.00 45.00 1.82
250 251 1.066143 AGCATCTGTTGGGGAACGTAG 60.066 52.381 0.00 0.00 0.00 3.51
251 252 0.981183 AGCATCTGTTGGGGAACGTA 59.019 50.000 0.00 0.00 0.00 3.57
252 253 0.981183 TAGCATCTGTTGGGGAACGT 59.019 50.000 0.00 0.00 0.00 3.99
253 254 1.369625 GTAGCATCTGTTGGGGAACG 58.630 55.000 0.00 0.00 0.00 3.95
254 255 1.282157 AGGTAGCATCTGTTGGGGAAC 59.718 52.381 0.00 0.00 0.00 3.62
255 256 1.559682 GAGGTAGCATCTGTTGGGGAA 59.440 52.381 0.00 0.00 0.00 3.97
256 257 1.204146 GAGGTAGCATCTGTTGGGGA 58.796 55.000 0.00 0.00 0.00 4.81
257 258 0.181350 GGAGGTAGCATCTGTTGGGG 59.819 60.000 0.00 0.00 0.00 4.96
258 259 1.207791 AGGAGGTAGCATCTGTTGGG 58.792 55.000 0.00 0.00 0.00 4.12
259 260 2.739932 CGAAGGAGGTAGCATCTGTTGG 60.740 54.545 0.00 0.00 0.00 3.77
260 261 2.544685 CGAAGGAGGTAGCATCTGTTG 58.455 52.381 0.00 0.00 0.00 3.33
261 262 2.969628 CGAAGGAGGTAGCATCTGTT 57.030 50.000 0.00 0.00 0.00 3.16
284 285 1.822990 AGCATGAAAGCAATGACCAGG 59.177 47.619 0.00 0.00 36.85 4.45
395 396 5.514274 AAAACCACAACCTAGACAACATG 57.486 39.130 0.00 0.00 0.00 3.21
429 430 0.110238 CAACGCCAAAGATGACACGG 60.110 55.000 0.00 0.00 0.00 4.94
443 444 1.226030 AAGAAGGCACCGTACAACGC 61.226 55.000 0.00 0.00 40.91 4.84
464 465 4.783242 TGATAAAAAGAAGAGTGCAACGC 58.217 39.130 0.00 0.00 45.86 4.84
481 482 8.565896 AGAGCCGCATATATTTCATTTGATAA 57.434 30.769 0.00 0.00 0.00 1.75
494 495 2.037641 ACATGCAGAAGAGCCGCATATA 59.962 45.455 0.00 0.00 44.30 0.86
496 497 0.178767 ACATGCAGAAGAGCCGCATA 59.821 50.000 0.00 0.00 44.30 3.14
507 508 6.454795 GGATTTTCTTTTAACCACATGCAGA 58.545 36.000 0.00 0.00 0.00 4.26
515 516 8.852135 AGTTGATTACGGATTTTCTTTTAACCA 58.148 29.630 0.00 0.00 0.00 3.67
516 517 9.124807 CAGTTGATTACGGATTTTCTTTTAACC 57.875 33.333 0.00 0.00 0.00 2.85
517 518 9.124807 CCAGTTGATTACGGATTTTCTTTTAAC 57.875 33.333 0.00 0.00 0.00 2.01
518 519 8.852135 ACCAGTTGATTACGGATTTTCTTTTAA 58.148 29.630 0.00 0.00 0.00 1.52
523 524 4.941873 GGACCAGTTGATTACGGATTTTCT 59.058 41.667 0.00 0.00 0.00 2.52
524 525 4.201783 CGGACCAGTTGATTACGGATTTTC 60.202 45.833 0.00 0.00 0.00 2.29
528 529 2.104967 TCGGACCAGTTGATTACGGAT 58.895 47.619 0.00 0.00 0.00 4.18
566 567 9.308000 ACAAACTCTTCATTAATTATTCACCCA 57.692 29.630 0.00 0.00 0.00 4.51
579 580 9.252962 CAATTTGCTTAGAACAAACTCTTCATT 57.747 29.630 0.00 0.00 39.65 2.57
587 588 6.588348 ACTTGCAATTTGCTTAGAACAAAC 57.412 33.333 21.19 0.00 45.31 2.93
594 595 9.282247 CAAAGATAGTACTTGCAATTTGCTTAG 57.718 33.333 21.19 18.81 45.31 2.18
600 601 8.637986 TGGTTTCAAAGATAGTACTTGCAATTT 58.362 29.630 0.00 0.00 0.00 1.82
610 611 6.544197 TGTGCAAGTTGGTTTCAAAGATAGTA 59.456 34.615 4.75 0.00 34.28 1.82
611 612 5.359576 TGTGCAAGTTGGTTTCAAAGATAGT 59.640 36.000 4.75 0.00 34.28 2.12
612 613 5.687285 GTGTGCAAGTTGGTTTCAAAGATAG 59.313 40.000 4.75 0.00 34.28 2.08
646 651 3.915437 TTTTCGGGAATCAGTCTTTGC 57.085 42.857 0.00 0.00 0.00 3.68
684 690 4.130857 TGAACGAGCATAGTTGGTTTCAA 58.869 39.130 0.00 0.00 32.81 2.69
685 691 3.734463 TGAACGAGCATAGTTGGTTTCA 58.266 40.909 0.00 0.00 32.81 2.69
688 694 5.240623 TGAAAATGAACGAGCATAGTTGGTT 59.759 36.000 0.00 0.00 32.81 3.67
689 695 4.759693 TGAAAATGAACGAGCATAGTTGGT 59.240 37.500 0.00 0.00 32.81 3.67
691 697 5.088739 GGTGAAAATGAACGAGCATAGTTG 58.911 41.667 0.00 0.00 32.81 3.16
692 698 4.142902 CGGTGAAAATGAACGAGCATAGTT 60.143 41.667 0.00 0.00 36.35 2.24
693 699 3.370978 CGGTGAAAATGAACGAGCATAGT 59.629 43.478 0.00 0.00 0.00 2.12
694 700 3.785505 GCGGTGAAAATGAACGAGCATAG 60.786 47.826 0.00 0.00 0.00 2.23
695 701 2.095213 GCGGTGAAAATGAACGAGCATA 59.905 45.455 0.00 0.00 0.00 3.14
696 702 1.135689 GCGGTGAAAATGAACGAGCAT 60.136 47.619 0.00 0.00 0.00 3.79
697 703 0.237235 GCGGTGAAAATGAACGAGCA 59.763 50.000 0.00 0.00 0.00 4.26
698 704 0.237235 TGCGGTGAAAATGAACGAGC 59.763 50.000 0.00 0.00 0.00 5.03
699 705 2.679355 TTGCGGTGAAAATGAACGAG 57.321 45.000 0.00 0.00 0.00 4.18
700 706 3.422417 TTTTGCGGTGAAAATGAACGA 57.578 38.095 0.00 0.00 0.00 3.85
718 724 7.336931 AGTGAATGGACGAGCATAGTTATTTTT 59.663 33.333 0.00 0.00 0.00 1.94
719 725 6.823689 AGTGAATGGACGAGCATAGTTATTTT 59.176 34.615 0.00 0.00 0.00 1.82
720 726 6.349300 AGTGAATGGACGAGCATAGTTATTT 58.651 36.000 0.00 0.00 0.00 1.40
721 727 5.918608 AGTGAATGGACGAGCATAGTTATT 58.081 37.500 0.00 0.00 0.00 1.40
722 728 5.537300 AGTGAATGGACGAGCATAGTTAT 57.463 39.130 0.00 0.00 0.00 1.89
725 731 3.195610 TCAAGTGAATGGACGAGCATAGT 59.804 43.478 0.00 0.00 0.00 2.12
762 769 1.590525 GTGTCCAGCACGTGAACGA 60.591 57.895 22.23 7.29 43.02 3.85
775 782 6.002082 ACCCTAAAAAGAATGTACAGTGTCC 58.998 40.000 0.00 0.00 0.00 4.02
805 817 1.141881 CACCTCGAGACCCGGAATG 59.858 63.158 15.71 0.00 39.14 2.67
840 852 0.249911 GGCCTGGTATAACAGCCTCG 60.250 60.000 12.62 0.00 37.16 4.63
956 992 1.988015 CCAGGGTTTTAGGGCTCGA 59.012 57.895 0.00 0.00 0.00 4.04
1014 1050 1.074850 GGGGAGGGGAAGAGAGGAG 60.075 68.421 0.00 0.00 0.00 3.69
1101 1142 1.366366 GCGGCGCTAGGGATTCTTA 59.634 57.895 26.86 0.00 0.00 2.10
1145 1186 1.228306 CCGCGAGAGTAGGGGAGAT 60.228 63.158 8.23 0.00 43.49 2.75
1325 1370 1.108132 GGAGACGGAGGTAGCGGATT 61.108 60.000 0.00 0.00 0.00 3.01
1326 1371 1.528776 GGAGACGGAGGTAGCGGAT 60.529 63.158 0.00 0.00 0.00 4.18
1361 1407 3.814268 ACCATACGCGCGTACGGT 61.814 61.111 44.11 44.11 41.60 4.83
1366 1412 2.098233 CCTTTGACCATACGCGCGT 61.098 57.895 39.05 39.05 0.00 6.01
1368 1414 1.423845 CACCTTTGACCATACGCGC 59.576 57.895 5.73 0.00 0.00 6.86
1387 1433 7.178712 AGATGAGTCGACTAAACAAAACAAG 57.821 36.000 20.09 0.00 0.00 3.16
1466 1518 1.750399 CCATCCCACCTTCCTTGCG 60.750 63.158 0.00 0.00 0.00 4.85
1472 1524 1.767759 CCATGAACCATCCCACCTTC 58.232 55.000 0.00 0.00 0.00 3.46
1484 1536 3.406764 ACTCAAAGACAGAGCCATGAAC 58.593 45.455 0.00 0.00 36.58 3.18
1513 1568 2.221055 GTCAGAGCAAACTACAACACCG 59.779 50.000 0.00 0.00 0.00 4.94
1566 1672 2.846193 TCCAAAACAGCCACAGTAGAC 58.154 47.619 0.00 0.00 0.00 2.59
1597 1703 7.119699 CACAGGTTTCTGCATTAACAGATTCTA 59.880 37.037 11.70 0.00 45.75 2.10
1598 1704 6.006449 ACAGGTTTCTGCATTAACAGATTCT 58.994 36.000 11.70 0.00 45.75 2.40
1619 1725 9.193133 GCTACCACAATAATACTACATACACAG 57.807 37.037 0.00 0.00 0.00 3.66
1653 1759 7.336176 GGGACCCAGTAAAGATTGTAACTTTAG 59.664 40.741 5.33 0.00 39.45 1.85
1684 1790 8.623310 AAAAACTGTAATTTTCACTGGTAACG 57.377 30.769 0.00 0.00 32.63 3.18
1765 1871 5.488341 GAAGCCTCTCACATTAAACCTACA 58.512 41.667 0.00 0.00 0.00 2.74
1766 1872 4.567159 CGAAGCCTCTCACATTAAACCTAC 59.433 45.833 0.00 0.00 0.00 3.18
1768 1874 3.008049 ACGAAGCCTCTCACATTAAACCT 59.992 43.478 0.00 0.00 0.00 3.50
1770 1876 5.147162 CAAACGAAGCCTCTCACATTAAAC 58.853 41.667 0.00 0.00 0.00 2.01
1771 1877 4.819630 ACAAACGAAGCCTCTCACATTAAA 59.180 37.500 0.00 0.00 0.00 1.52
1788 1923 3.120338 ACATCATAAAGGACGCACAAACG 60.120 43.478 0.00 0.00 39.50 3.60
1796 1931 6.043327 TGCGAAAATACATCATAAAGGACG 57.957 37.500 0.00 0.00 0.00 4.79
1804 1939 7.315142 ACAAGAAACATGCGAAAATACATCAT 58.685 30.769 0.00 0.00 0.00 2.45
1816 1953 3.670055 GGTCATTCAACAAGAAACATGCG 59.330 43.478 0.00 0.00 40.22 4.73
1826 1963 2.964464 AGCACCATTGGTCATTCAACAA 59.036 40.909 5.04 0.00 31.02 2.83
1861 1998 5.876612 ACAAGACAATGCTGAAGAATCTC 57.123 39.130 0.00 0.00 0.00 2.75
1918 2055 7.604164 AGTCAGTAATGAACAACAATACAGGAG 59.396 37.037 0.00 0.00 37.34 3.69
2036 2174 1.683943 TGCTGGGCTTGCTATCAATC 58.316 50.000 4.24 0.00 0.00 2.67
2205 2343 9.433153 TCAATTTGCTGCAAAATCACAATAATA 57.567 25.926 29.05 4.52 36.90 0.98
2206 2344 8.325421 TCAATTTGCTGCAAAATCACAATAAT 57.675 26.923 29.05 8.16 36.90 1.28
2207 2345 7.725818 TCAATTTGCTGCAAAATCACAATAA 57.274 28.000 29.05 5.25 36.90 1.40
2482 2632 4.410228 ACCAGAAGGCATGCTAGAAATAGA 59.590 41.667 18.92 0.00 39.06 1.98
2483 2633 4.712476 ACCAGAAGGCATGCTAGAAATAG 58.288 43.478 18.92 2.81 39.06 1.73
2484 2634 4.778213 ACCAGAAGGCATGCTAGAAATA 57.222 40.909 18.92 0.00 39.06 1.40
2485 2635 3.659183 ACCAGAAGGCATGCTAGAAAT 57.341 42.857 18.92 0.00 39.06 2.17
2865 3037 2.301296 CTCTGCTTCCACTTCTTCTGGA 59.699 50.000 0.00 0.00 35.91 3.86
2874 3046 0.324285 CCTTCAGCTCTGCTTCCACT 59.676 55.000 0.00 0.00 36.40 4.00
3021 3196 4.613437 AGTTGGGAGCAATGGTATTCATT 58.387 39.130 0.00 0.00 46.24 2.57
3426 3609 3.683802 AGAGATCTTTCCCTTGTGCTTG 58.316 45.455 0.00 0.00 0.00 4.01
3556 3739 4.154918 GGTGTCAAGAAATTGCCTCTACAG 59.845 45.833 0.00 0.00 0.00 2.74
3571 3754 8.873215 AACAATATCTTATCTACGGTGTCAAG 57.127 34.615 0.00 0.00 0.00 3.02
3676 3859 3.713826 ATCTTGGGCTTTCCTTTCGTA 57.286 42.857 0.00 0.00 36.20 3.43
3942 4201 6.389906 GCAAGTCTGGTTTTTGCTATTACAT 58.610 36.000 1.51 0.00 42.84 2.29
4020 4279 5.840693 TGACAGAATATGCAGAATCCCTCTA 59.159 40.000 0.00 0.00 31.12 2.43
4064 4324 2.171003 ACTGGGAAATACAAAGGCTGC 58.829 47.619 0.00 0.00 0.00 5.25
4095 4365 8.739972 AGTTTCAAACTCTAATTGTTCAACAGT 58.260 29.630 0.00 0.00 37.02 3.55
4096 4366 9.573133 AAGTTTCAAACTCTAATTGTTCAACAG 57.427 29.630 2.45 0.00 41.91 3.16
4280 4552 0.900182 TCTCTTTCTCCTGCTCGCCA 60.900 55.000 0.00 0.00 0.00 5.69
4445 4717 3.503748 CCTCAGCGTCCAATTTCTTCTTT 59.496 43.478 0.00 0.00 0.00 2.52
4456 4728 2.265739 GTGCATCCTCAGCGTCCA 59.734 61.111 0.00 0.00 33.85 4.02
4457 4729 2.512515 GGTGCATCCTCAGCGTCC 60.513 66.667 0.00 0.00 33.85 4.79
4469 4741 1.522092 GTCGATCTCCATGGGTGCA 59.478 57.895 13.02 0.00 0.00 4.57
4472 4744 0.970937 ACACGTCGATCTCCATGGGT 60.971 55.000 13.02 0.00 0.00 4.51
4589 4864 5.584251 GCAAATCCCAAAACTTTCAGACAAA 59.416 36.000 0.00 0.00 0.00 2.83
4609 4884 3.680490 TCCATTCTACATGAACGGCAAA 58.320 40.909 0.00 0.00 37.88 3.68
4692 4967 2.171003 GCATTGGGCCTCTTAAAGTGT 58.829 47.619 4.53 0.00 36.11 3.55
4818 5098 2.048603 GTTCCCATCCCTGCACAGC 61.049 63.158 0.00 0.00 0.00 4.40
4844 5124 7.096551 ACAACAGCAACAACAAAAATCTAGTT 58.903 30.769 0.00 0.00 0.00 2.24
4852 5132 3.059325 GTGCAACAACAGCAACAACAAAA 60.059 39.130 0.00 0.00 44.64 2.44
4879 5159 7.336931 ACAAGAAACAATGTCTAGTTGAGTGTT 59.663 33.333 0.00 0.00 30.98 3.32
4880 5160 6.823689 ACAAGAAACAATGTCTAGTTGAGTGT 59.176 34.615 0.00 0.00 0.00 3.55
4881 5161 7.251704 ACAAGAAACAATGTCTAGTTGAGTG 57.748 36.000 0.00 0.00 0.00 3.51
4882 5162 7.336931 ACAACAAGAAACAATGTCTAGTTGAGT 59.663 33.333 17.38 8.32 37.74 3.41
4885 5165 7.253750 GCAACAACAAGAAACAATGTCTAGTTG 60.254 37.037 12.24 12.24 38.42 3.16
4894 5174 4.190001 TGCATGCAACAACAAGAAACAAT 58.810 34.783 20.30 0.00 0.00 2.71
4919 5199 1.997606 GTTCAATTCTGCCAGCAATGC 59.002 47.619 0.00 0.00 0.00 3.56
4935 5215 4.125703 GTGGCAATGTTTCAATTGGTTCA 58.874 39.130 5.42 2.98 37.89 3.18
4943 5226 2.361757 CTCAGTGGTGGCAATGTTTCAA 59.638 45.455 0.00 0.00 0.00 2.69
4944 5227 1.955778 CTCAGTGGTGGCAATGTTTCA 59.044 47.619 0.00 0.00 0.00 2.69
4945 5228 1.336240 GCTCAGTGGTGGCAATGTTTC 60.336 52.381 0.00 0.00 0.00 2.78
5007 5301 5.189180 GTCTTCTACATTGGAAGGCAAGAT 58.811 41.667 3.62 0.00 42.77 2.40
5073 5367 3.470888 AAGCCACCCCTCGGATCG 61.471 66.667 0.00 0.00 0.00 3.69
5108 5402 4.730949 ATGGATTCAGTTGCAAAGATGG 57.269 40.909 0.00 0.00 0.00 3.51
5139 5433 9.364989 CAGGAAGAAACAAAACAACTGATAAAA 57.635 29.630 0.00 0.00 0.00 1.52
5140 5434 7.978975 CCAGGAAGAAACAAAACAACTGATAAA 59.021 33.333 0.00 0.00 0.00 1.40
5141 5435 7.123547 ACCAGGAAGAAACAAAACAACTGATAA 59.876 33.333 0.00 0.00 0.00 1.75
5142 5436 6.605594 ACCAGGAAGAAACAAAACAACTGATA 59.394 34.615 0.00 0.00 0.00 2.15
5143 5437 5.422012 ACCAGGAAGAAACAAAACAACTGAT 59.578 36.000 0.00 0.00 0.00 2.90
5144 5438 4.770010 ACCAGGAAGAAACAAAACAACTGA 59.230 37.500 0.00 0.00 0.00 3.41
5145 5439 5.072040 ACCAGGAAGAAACAAAACAACTG 57.928 39.130 0.00 0.00 0.00 3.16
5146 5440 5.738619 AACCAGGAAGAAACAAAACAACT 57.261 34.783 0.00 0.00 0.00 3.16
5147 5441 5.121611 CCAAACCAGGAAGAAACAAAACAAC 59.878 40.000 0.00 0.00 0.00 3.32
5148 5442 5.221742 ACCAAACCAGGAAGAAACAAAACAA 60.222 36.000 0.00 0.00 0.00 2.83
5149 5443 4.284746 ACCAAACCAGGAAGAAACAAAACA 59.715 37.500 0.00 0.00 0.00 2.83
5150 5444 4.827692 ACCAAACCAGGAAGAAACAAAAC 58.172 39.130 0.00 0.00 0.00 2.43
5151 5445 4.528596 TGACCAAACCAGGAAGAAACAAAA 59.471 37.500 0.00 0.00 0.00 2.44
5152 5446 4.090090 TGACCAAACCAGGAAGAAACAAA 58.910 39.130 0.00 0.00 0.00 2.83
5153 5447 3.699038 CTGACCAAACCAGGAAGAAACAA 59.301 43.478 0.00 0.00 0.00 2.83
5154 5448 3.287222 CTGACCAAACCAGGAAGAAACA 58.713 45.455 0.00 0.00 0.00 2.83
5155 5449 3.288092 ACTGACCAAACCAGGAAGAAAC 58.712 45.455 0.00 0.00 36.03 2.78
5166 5460 8.345565 GGTTTCATCATATGATACTGACCAAAC 58.654 37.037 17.77 12.96 39.94 2.93
5170 5464 7.933577 TCAAGGTTTCATCATATGATACTGACC 59.066 37.037 17.77 19.77 39.94 4.02
5215 5511 4.156455 TCTCATCCACAGGAAAATAGGC 57.844 45.455 0.00 0.00 34.34 3.93
5216 5512 5.128919 CCTTCTCATCCACAGGAAAATAGG 58.871 45.833 0.00 0.00 34.34 2.57
5217 5513 4.578105 GCCTTCTCATCCACAGGAAAATAG 59.422 45.833 0.00 0.00 34.34 1.73
5218 5514 4.018506 TGCCTTCTCATCCACAGGAAAATA 60.019 41.667 0.00 0.00 34.34 1.40
5304 5619 9.841295 ACAGACCTTTACAATGTAAAAGACTAA 57.159 29.630 18.21 0.00 35.19 2.24
5319 5717 6.484818 TTAAATTGCGGTACAGACCTTTAC 57.515 37.500 0.00 0.00 44.46 2.01
5365 5765 6.471233 TCAGGTATCTGACTGTAATTCCAG 57.529 41.667 0.14 0.00 44.39 3.86



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.