Multiple sequence alignment - TraesCS2A01G118600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G118600 chr2A 100.000 3308 0 0 1 3308 69202108 69205415 0.000000e+00 6109.0
1 TraesCS2A01G118600 chr2A 97.727 396 7 2 1 394 145437469 145437864 0.000000e+00 680.0
2 TraesCS2A01G118600 chr2A 97.698 391 9 0 1 391 100131491 100131101 0.000000e+00 673.0
3 TraesCS2A01G118600 chr2B 90.629 2892 166 52 392 3229 105687818 105690658 0.000000e+00 3742.0
4 TraesCS2A01G118600 chr2B 97.733 397 9 0 1 397 39425452 39425056 0.000000e+00 684.0
5 TraesCS2A01G118600 chr2D 89.244 1878 131 33 1388 3229 65639160 65637318 0.000000e+00 2283.0
6 TraesCS2A01G118600 chr2D 89.111 900 41 26 390 1284 65640051 65639204 0.000000e+00 1066.0
7 TraesCS2A01G118600 chr2D 74.569 232 32 20 2847 3065 430508613 430508396 3.540000e-10 76.8
8 TraesCS2A01G118600 chr2D 97.727 44 1 0 3264 3307 557715248 557715291 3.540000e-10 76.8
9 TraesCS2A01G118600 chr4A 97.698 391 8 1 1 391 377592176 377591787 0.000000e+00 671.0
10 TraesCS2A01G118600 chr4A 97.442 391 10 0 1 391 537234277 537234667 0.000000e+00 667.0
11 TraesCS2A01G118600 chr1A 97.686 389 9 0 3 391 58178952 58178564 0.000000e+00 669.0
12 TraesCS2A01G118600 chr1A 85.227 176 24 2 2593 2766 363530878 363530703 2.620000e-41 180.0
13 TraesCS2A01G118600 chr1A 95.745 47 2 0 3260 3306 5595433 5595387 3.540000e-10 76.8
14 TraesCS2A01G118600 chr1A 95.745 47 2 0 3260 3306 5601998 5601952 3.540000e-10 76.8
15 TraesCS2A01G118600 chr6B 97.442 391 10 0 1 391 669342565 669342175 0.000000e+00 667.0
16 TraesCS2A01G118600 chr4B 97.442 391 10 0 1 391 489024881 489025271 0.000000e+00 667.0
17 TraesCS2A01G118600 chr4B 94.231 52 1 2 3256 3307 512755426 512755377 9.840000e-11 78.7
18 TraesCS2A01G118600 chr7B 96.526 403 13 1 1 403 253903885 253903484 0.000000e+00 665.0
19 TraesCS2A01G118600 chr3B 78.421 190 26 11 2991 3168 417730642 417730456 3.490000e-20 110.0
20 TraesCS2A01G118600 chr5D 95.745 47 1 1 3260 3306 299922766 299922811 1.270000e-09 75.0
21 TraesCS2A01G118600 chr3A 92.453 53 2 2 3254 3306 33612214 33612264 1.270000e-09 75.0
22 TraesCS2A01G118600 chr3A 89.474 57 4 2 3250 3305 640760161 640760106 1.650000e-08 71.3
23 TraesCS2A01G118600 chr7D 90.909 55 4 1 3253 3306 230924207 230924153 4.580000e-09 73.1
24 TraesCS2A01G118600 chr6D 92.157 51 4 0 3257 3307 431112798 431112848 4.580000e-09 73.1
25 TraesCS2A01G118600 chr4D 100.000 29 0 0 2991 3019 98446054 98446026 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G118600 chr2A 69202108 69205415 3307 False 6109.0 6109 100.0000 1 3308 1 chr2A.!!$F1 3307
1 TraesCS2A01G118600 chr2B 105687818 105690658 2840 False 3742.0 3742 90.6290 392 3229 1 chr2B.!!$F1 2837
2 TraesCS2A01G118600 chr2D 65637318 65640051 2733 True 1674.5 2283 89.1775 390 3229 2 chr2D.!!$R2 2839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.036010 ATGAAGAACTGCCTGGTCGG 60.036 55.0 0.00 0.00 37.49 4.79 F
133 134 0.164647 GCGCTTAAGTCACTGTGCAG 59.835 55.0 0.00 0.00 36.16 4.41 F
134 135 0.164647 CGCTTAAGTCACTGTGCAGC 59.835 55.0 2.12 4.61 0.00 5.25 F
323 324 0.397941 CCAAAGGGTCAGCAGAGTGA 59.602 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1385 1401 0.681733 ACAGAGTGATGGCAACTCGT 59.318 50.000 12.38 10.76 35.79 4.18 R
1632 1651 2.034687 TTCTCCTTGCCCAGCAGC 59.965 61.111 0.00 0.00 40.61 5.25 R
1962 1981 2.043852 ATGAGGAGGTCGCGGAGT 60.044 61.111 6.13 0.00 0.00 3.85 R
2316 2335 0.039617 CAGATCGATCGAGCCAGTCC 60.040 60.000 28.21 8.70 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.811796 AATCTTCAGATCTGAGAGGGATG 57.188 43.478 23.92 10.45 41.13 3.51
23 24 4.262891 TCTTCAGATCTGAGAGGGATGT 57.737 45.455 23.92 0.00 41.13 3.06
24 25 3.959449 TCTTCAGATCTGAGAGGGATGTG 59.041 47.826 23.92 8.40 41.13 3.21
25 26 2.675583 TCAGATCTGAGAGGGATGTGG 58.324 52.381 21.67 0.00 35.86 4.17
26 27 1.693062 CAGATCTGAGAGGGATGTGGG 59.307 57.143 18.34 0.00 32.90 4.61
27 28 1.055040 GATCTGAGAGGGATGTGGGG 58.945 60.000 0.00 0.00 0.00 4.96
28 29 0.401105 ATCTGAGAGGGATGTGGGGG 60.401 60.000 0.00 0.00 0.00 5.40
42 43 3.181282 GGGGGATTAGATGGGGGC 58.819 66.667 0.00 0.00 0.00 5.80
43 44 2.757077 GGGGATTAGATGGGGGCG 59.243 66.667 0.00 0.00 0.00 6.13
44 45 2.034221 GGGATTAGATGGGGGCGC 59.966 66.667 0.00 0.00 0.00 6.53
45 46 2.034221 GGATTAGATGGGGGCGCC 59.966 66.667 21.18 21.18 0.00 6.53
46 47 2.358737 GATTAGATGGGGGCGCCG 60.359 66.667 22.54 0.00 0.00 6.46
47 48 4.643387 ATTAGATGGGGGCGCCGC 62.643 66.667 33.77 33.77 36.97 6.53
67 68 3.826754 CCGCCGCTGCTCTCTGTA 61.827 66.667 0.00 0.00 34.43 2.74
68 69 2.580867 CGCCGCTGCTCTCTGTAC 60.581 66.667 0.00 0.00 34.43 2.90
69 70 2.573869 GCCGCTGCTCTCTGTACA 59.426 61.111 0.00 0.00 33.53 2.90
70 71 1.518133 GCCGCTGCTCTCTGTACAG 60.518 63.158 17.17 17.17 34.48 2.74
71 72 1.938657 GCCGCTGCTCTCTGTACAGA 61.939 60.000 23.80 23.80 33.10 3.41
81 82 2.031258 TCTGTACAGAGAGCGGAGAG 57.969 55.000 21.74 0.00 32.82 3.20
82 83 1.555533 TCTGTACAGAGAGCGGAGAGA 59.444 52.381 21.74 0.00 32.82 3.10
83 84 2.171659 TCTGTACAGAGAGCGGAGAGAT 59.828 50.000 21.74 0.00 32.82 2.75
84 85 2.290367 CTGTACAGAGAGCGGAGAGATG 59.710 54.545 18.45 0.00 0.00 2.90
85 86 2.092914 TGTACAGAGAGCGGAGAGATGA 60.093 50.000 0.00 0.00 0.00 2.92
86 87 2.136298 ACAGAGAGCGGAGAGATGAA 57.864 50.000 0.00 0.00 0.00 2.57
87 88 2.023673 ACAGAGAGCGGAGAGATGAAG 58.976 52.381 0.00 0.00 0.00 3.02
88 89 2.296792 CAGAGAGCGGAGAGATGAAGA 58.703 52.381 0.00 0.00 0.00 2.87
89 90 2.687425 CAGAGAGCGGAGAGATGAAGAA 59.313 50.000 0.00 0.00 0.00 2.52
90 91 2.687935 AGAGAGCGGAGAGATGAAGAAC 59.312 50.000 0.00 0.00 0.00 3.01
91 92 2.687935 GAGAGCGGAGAGATGAAGAACT 59.312 50.000 0.00 0.00 0.00 3.01
92 93 2.426738 AGAGCGGAGAGATGAAGAACTG 59.573 50.000 0.00 0.00 0.00 3.16
93 94 1.134848 AGCGGAGAGATGAAGAACTGC 60.135 52.381 0.00 0.00 0.00 4.40
94 95 1.933247 CGGAGAGATGAAGAACTGCC 58.067 55.000 0.00 0.00 0.00 4.85
95 96 1.480137 CGGAGAGATGAAGAACTGCCT 59.520 52.381 0.00 0.00 0.00 4.75
96 97 2.738000 CGGAGAGATGAAGAACTGCCTG 60.738 54.545 0.00 0.00 0.00 4.85
97 98 2.419851 GGAGAGATGAAGAACTGCCTGG 60.420 54.545 0.00 0.00 0.00 4.45
98 99 2.235898 GAGAGATGAAGAACTGCCTGGT 59.764 50.000 0.00 0.00 0.00 4.00
99 100 2.235898 AGAGATGAAGAACTGCCTGGTC 59.764 50.000 0.00 0.00 0.00 4.02
100 101 1.066573 AGATGAAGAACTGCCTGGTCG 60.067 52.381 0.00 0.00 37.49 4.79
101 102 0.036010 ATGAAGAACTGCCTGGTCGG 60.036 55.000 0.00 0.00 37.49 4.79
102 103 1.376037 GAAGAACTGCCTGGTCGGG 60.376 63.158 0.00 0.00 37.49 5.14
126 127 3.849953 CGGCCGCGCTTAAGTCAC 61.850 66.667 14.67 0.00 0.00 3.67
127 128 2.434359 GGCCGCGCTTAAGTCACT 60.434 61.111 5.56 0.00 0.00 3.41
128 129 2.740714 GGCCGCGCTTAAGTCACTG 61.741 63.158 5.56 0.00 0.00 3.66
129 130 2.027625 GCCGCGCTTAAGTCACTGT 61.028 57.895 5.56 0.00 0.00 3.55
130 131 1.781555 CCGCGCTTAAGTCACTGTG 59.218 57.895 5.56 0.17 0.00 3.66
131 132 1.130613 CGCGCTTAAGTCACTGTGC 59.869 57.895 5.56 0.00 0.00 4.57
132 133 1.556591 CGCGCTTAAGTCACTGTGCA 61.557 55.000 5.56 0.00 35.91 4.57
133 134 0.164647 GCGCTTAAGTCACTGTGCAG 59.835 55.000 0.00 0.00 36.16 4.41
134 135 0.164647 CGCTTAAGTCACTGTGCAGC 59.835 55.000 2.12 4.61 0.00 5.25
135 136 0.164647 GCTTAAGTCACTGTGCAGCG 59.835 55.000 2.12 0.00 0.00 5.18
136 137 0.164647 CTTAAGTCACTGTGCAGCGC 59.835 55.000 0.00 0.00 0.00 5.92
137 138 1.227999 TTAAGTCACTGTGCAGCGCC 61.228 55.000 2.29 0.00 0.00 6.53
138 139 4.996434 AGTCACTGTGCAGCGCCC 62.996 66.667 2.29 0.00 0.00 6.13
140 141 4.560743 TCACTGTGCAGCGCCCAA 62.561 61.111 2.29 0.00 0.00 4.12
141 142 4.034258 CACTGTGCAGCGCCCAAG 62.034 66.667 2.29 5.21 0.00 3.61
142 143 4.254709 ACTGTGCAGCGCCCAAGA 62.255 61.111 2.29 0.00 0.00 3.02
143 144 3.429141 CTGTGCAGCGCCCAAGAG 61.429 66.667 2.29 0.00 0.00 2.85
165 166 2.425773 GCGCTGCACGTCAAAGTG 60.426 61.111 0.00 0.00 46.11 3.16
166 167 3.014036 CGCTGCACGTCAAAGTGT 58.986 55.556 0.00 0.00 43.61 3.55
167 168 1.368019 CGCTGCACGTCAAAGTGTG 60.368 57.895 0.00 0.00 43.61 3.82
168 169 1.009675 GCTGCACGTCAAAGTGTGG 60.010 57.895 0.00 0.00 43.61 4.17
169 170 1.009675 CTGCACGTCAAAGTGTGGC 60.010 57.895 0.00 0.00 43.61 5.01
174 175 4.371975 GTCAAAGTGTGGCGCCTA 57.628 55.556 29.70 14.39 0.00 3.93
175 176 2.162716 GTCAAAGTGTGGCGCCTAG 58.837 57.895 29.70 9.32 0.00 3.02
189 190 1.300542 CCTAGCTCTTAGGCGCTGC 60.301 63.158 7.64 2.66 42.50 5.25
190 191 1.439228 CTAGCTCTTAGGCGCTGCA 59.561 57.895 7.64 0.00 37.05 4.41
191 192 0.873743 CTAGCTCTTAGGCGCTGCAC 60.874 60.000 7.64 0.00 37.05 4.57
192 193 1.604147 TAGCTCTTAGGCGCTGCACA 61.604 55.000 7.64 0.00 37.05 4.57
193 194 2.459442 GCTCTTAGGCGCTGCACAG 61.459 63.158 7.64 0.00 0.00 3.66
194 195 1.812922 CTCTTAGGCGCTGCACAGG 60.813 63.158 7.64 0.00 0.00 4.00
195 196 2.046892 CTTAGGCGCTGCACAGGT 60.047 61.111 7.64 0.00 0.00 4.00
196 197 2.358615 TTAGGCGCTGCACAGGTG 60.359 61.111 7.64 0.00 0.00 4.00
205 206 3.349006 GCACAGGTGCGTGTGGAG 61.349 66.667 21.42 2.79 46.73 3.86
206 207 3.349006 CACAGGTGCGTGTGGAGC 61.349 66.667 14.90 0.00 43.56 4.70
207 208 4.626081 ACAGGTGCGTGTGGAGCC 62.626 66.667 0.00 0.00 34.02 4.70
214 215 3.716006 CGTGTGGAGCCGCAACTG 61.716 66.667 4.04 0.00 38.24 3.16
215 216 3.357079 GTGTGGAGCCGCAACTGG 61.357 66.667 4.04 0.00 38.24 4.00
216 217 3.555324 TGTGGAGCCGCAACTGGA 61.555 61.111 0.00 0.00 33.12 3.86
217 218 3.050275 GTGGAGCCGCAACTGGAC 61.050 66.667 0.00 0.00 0.00 4.02
218 219 4.329545 TGGAGCCGCAACTGGACC 62.330 66.667 0.00 0.00 0.00 4.46
219 220 4.329545 GGAGCCGCAACTGGACCA 62.330 66.667 0.00 0.00 0.00 4.02
220 221 2.743928 GAGCCGCAACTGGACCAG 60.744 66.667 20.45 20.45 37.52 4.00
221 222 4.335647 AGCCGCAACTGGACCAGG 62.336 66.667 25.34 9.36 35.51 4.45
224 225 4.335647 CGCAACTGGACCAGGGCT 62.336 66.667 27.56 11.63 35.05 5.19
225 226 2.674380 GCAACTGGACCAGGGCTG 60.674 66.667 25.34 18.62 35.51 4.85
226 227 2.674380 CAACTGGACCAGGGCTGC 60.674 66.667 25.34 0.00 35.51 5.25
227 228 3.971702 AACTGGACCAGGGCTGCC 61.972 66.667 25.34 11.05 35.51 4.85
229 230 4.729918 CTGGACCAGGGCTGCCAC 62.730 72.222 22.05 10.03 0.00 5.01
243 244 3.129502 CCACGCTGGCAGGATGTG 61.130 66.667 17.64 9.10 39.31 3.21
252 253 2.494445 CAGGATGTGCGACGCCTA 59.506 61.111 18.69 6.47 0.00 3.93
253 254 1.153647 CAGGATGTGCGACGCCTAA 60.154 57.895 18.69 2.73 0.00 2.69
254 255 1.141881 AGGATGTGCGACGCCTAAG 59.858 57.895 18.69 0.00 0.00 2.18
255 256 1.883084 GGATGTGCGACGCCTAAGG 60.883 63.158 18.69 0.00 0.00 2.69
256 257 1.883084 GATGTGCGACGCCTAAGGG 60.883 63.158 18.69 0.00 0.00 3.95
257 258 3.385749 ATGTGCGACGCCTAAGGGG 62.386 63.158 18.69 0.00 41.67 4.79
258 259 3.766691 GTGCGACGCCTAAGGGGA 61.767 66.667 18.69 0.00 39.07 4.81
259 260 2.998480 TGCGACGCCTAAGGGGAA 60.998 61.111 18.69 0.00 39.07 3.97
260 261 2.202892 GCGACGCCTAAGGGGAAG 60.203 66.667 9.14 0.00 39.07 3.46
261 262 2.499685 CGACGCCTAAGGGGAAGG 59.500 66.667 0.00 0.00 39.07 3.46
266 267 2.190578 CCTAAGGGGAAGGCGCTG 59.809 66.667 7.64 0.00 37.23 5.18
267 268 2.514824 CTAAGGGGAAGGCGCTGC 60.515 66.667 7.64 0.00 0.00 5.25
268 269 3.326578 TAAGGGGAAGGCGCTGCA 61.327 61.111 7.64 0.00 0.00 4.41
269 270 3.622060 TAAGGGGAAGGCGCTGCAC 62.622 63.158 7.64 0.00 0.00 4.57
273 274 2.047274 GGAAGGCGCTGCACAGTA 60.047 61.111 7.64 0.00 0.00 2.74
274 275 2.103042 GGAAGGCGCTGCACAGTAG 61.103 63.158 7.64 0.00 0.00 2.57
275 276 2.046892 AAGGCGCTGCACAGTAGG 60.047 61.111 7.64 0.00 0.00 3.18
276 277 3.612247 AAGGCGCTGCACAGTAGGG 62.612 63.158 7.64 0.00 0.00 3.53
277 278 4.394712 GGCGCTGCACAGTAGGGT 62.395 66.667 7.64 0.00 0.00 4.34
278 279 3.121030 GCGCTGCACAGTAGGGTG 61.121 66.667 0.00 0.00 41.72 4.61
284 285 4.373116 CACAGTAGGGTGCGGCGT 62.373 66.667 9.37 0.00 31.10 5.68
285 286 4.065281 ACAGTAGGGTGCGGCGTC 62.065 66.667 9.37 0.91 0.00 5.19
286 287 4.814294 CAGTAGGGTGCGGCGTCC 62.814 72.222 9.37 11.70 0.00 4.79
288 289 4.814294 GTAGGGTGCGGCGTCCAG 62.814 72.222 20.43 0.00 0.00 3.86
293 294 3.723348 GTGCGGCGTCCAGGTTTC 61.723 66.667 9.37 0.00 0.00 2.78
307 308 4.877619 TTTCGGGCGCCACACCAA 62.878 61.111 30.85 10.27 0.00 3.67
308 309 4.877619 TTCGGGCGCCACACCAAA 62.878 61.111 30.85 9.47 0.00 3.28
322 323 2.938354 CCAAAGGGTCAGCAGAGTG 58.062 57.895 0.00 0.00 0.00 3.51
323 324 0.397941 CCAAAGGGTCAGCAGAGTGA 59.602 55.000 0.00 0.00 0.00 3.41
324 325 1.202806 CCAAAGGGTCAGCAGAGTGAA 60.203 52.381 0.00 0.00 0.00 3.18
325 326 2.575532 CAAAGGGTCAGCAGAGTGAAA 58.424 47.619 0.00 0.00 0.00 2.69
326 327 3.152341 CAAAGGGTCAGCAGAGTGAAAT 58.848 45.455 0.00 0.00 0.00 2.17
327 328 3.515602 AAGGGTCAGCAGAGTGAAATT 57.484 42.857 0.00 0.00 0.00 1.82
328 329 3.515602 AGGGTCAGCAGAGTGAAATTT 57.484 42.857 0.00 0.00 0.00 1.82
329 330 3.837355 AGGGTCAGCAGAGTGAAATTTT 58.163 40.909 0.00 0.00 0.00 1.82
330 331 4.218312 AGGGTCAGCAGAGTGAAATTTTT 58.782 39.130 0.00 0.00 0.00 1.94
350 351 5.975693 TTTTCTTGAACAGGTCAGTTTGT 57.024 34.783 0.00 0.00 37.61 2.83
351 352 4.963276 TTCTTGAACAGGTCAGTTTGTG 57.037 40.909 0.00 0.00 37.61 3.33
352 353 4.214986 TCTTGAACAGGTCAGTTTGTGA 57.785 40.909 0.00 0.00 37.61 3.58
353 354 4.780815 TCTTGAACAGGTCAGTTTGTGAT 58.219 39.130 0.00 0.00 37.56 3.06
354 355 5.192927 TCTTGAACAGGTCAGTTTGTGATT 58.807 37.500 0.00 0.00 37.56 2.57
355 356 5.652014 TCTTGAACAGGTCAGTTTGTGATTT 59.348 36.000 0.00 0.00 37.56 2.17
356 357 5.247507 TGAACAGGTCAGTTTGTGATTTG 57.752 39.130 0.00 0.00 37.56 2.32
357 358 4.946772 TGAACAGGTCAGTTTGTGATTTGA 59.053 37.500 0.00 0.00 37.56 2.69
358 359 5.593909 TGAACAGGTCAGTTTGTGATTTGAT 59.406 36.000 0.00 0.00 37.56 2.57
359 360 6.096705 TGAACAGGTCAGTTTGTGATTTGATT 59.903 34.615 0.00 0.00 37.56 2.57
360 361 6.469782 ACAGGTCAGTTTGTGATTTGATTT 57.530 33.333 0.00 0.00 37.56 2.17
361 362 6.507023 ACAGGTCAGTTTGTGATTTGATTTC 58.493 36.000 0.00 0.00 37.56 2.17
362 363 6.322201 ACAGGTCAGTTTGTGATTTGATTTCT 59.678 34.615 0.00 0.00 37.56 2.52
363 364 6.639686 CAGGTCAGTTTGTGATTTGATTTCTG 59.360 38.462 0.00 0.00 37.56 3.02
364 365 5.403466 GGTCAGTTTGTGATTTGATTTCTGC 59.597 40.000 0.00 0.00 37.56 4.26
365 366 5.403466 GTCAGTTTGTGATTTGATTTCTGCC 59.597 40.000 0.00 0.00 37.56 4.85
366 367 5.302568 TCAGTTTGTGATTTGATTTCTGCCT 59.697 36.000 0.00 0.00 0.00 4.75
367 368 5.632347 CAGTTTGTGATTTGATTTCTGCCTC 59.368 40.000 0.00 0.00 0.00 4.70
368 369 5.302568 AGTTTGTGATTTGATTTCTGCCTCA 59.697 36.000 0.00 0.00 0.00 3.86
369 370 5.381174 TTGTGATTTGATTTCTGCCTCAG 57.619 39.130 0.00 0.00 0.00 3.35
370 371 3.760151 TGTGATTTGATTTCTGCCTCAGG 59.240 43.478 0.00 0.00 31.51 3.86
371 372 3.760684 GTGATTTGATTTCTGCCTCAGGT 59.239 43.478 0.00 0.00 31.51 4.00
372 373 4.012374 TGATTTGATTTCTGCCTCAGGTC 58.988 43.478 0.00 0.00 31.51 3.85
373 374 3.507162 TTTGATTTCTGCCTCAGGTCA 57.493 42.857 0.00 0.00 31.51 4.02
374 375 3.507162 TTGATTTCTGCCTCAGGTCAA 57.493 42.857 0.00 0.00 31.28 3.18
375 376 3.507162 TGATTTCTGCCTCAGGTCAAA 57.493 42.857 0.00 0.00 31.51 2.69
376 377 4.038271 TGATTTCTGCCTCAGGTCAAAT 57.962 40.909 0.00 0.00 31.51 2.32
377 378 4.012374 TGATTTCTGCCTCAGGTCAAATC 58.988 43.478 13.46 13.46 35.08 2.17
378 379 3.795688 TTTCTGCCTCAGGTCAAATCT 57.204 42.857 0.00 0.00 31.51 2.40
379 380 2.775911 TCTGCCTCAGGTCAAATCTG 57.224 50.000 0.00 0.00 31.51 2.90
380 381 1.980765 TCTGCCTCAGGTCAAATCTGT 59.019 47.619 0.00 0.00 34.15 3.41
381 382 2.082231 CTGCCTCAGGTCAAATCTGTG 58.918 52.381 0.00 0.00 34.15 3.66
382 383 1.699083 TGCCTCAGGTCAAATCTGTGA 59.301 47.619 0.00 0.00 34.15 3.58
383 384 2.306805 TGCCTCAGGTCAAATCTGTGAT 59.693 45.455 0.00 0.00 34.15 3.06
384 385 3.245016 TGCCTCAGGTCAAATCTGTGATT 60.245 43.478 0.00 0.00 34.15 2.57
385 386 3.760684 GCCTCAGGTCAAATCTGTGATTT 59.239 43.478 0.00 0.25 34.15 2.17
386 387 4.142513 GCCTCAGGTCAAATCTGTGATTTC 60.143 45.833 0.00 0.00 34.15 2.17
387 388 5.251764 CCTCAGGTCAAATCTGTGATTTCT 58.748 41.667 2.92 0.00 34.15 2.52
388 389 5.123502 CCTCAGGTCAAATCTGTGATTTCTG 59.876 44.000 2.92 7.78 34.15 3.02
466 467 1.154413 CGTGCAGCATCGTTTGGTC 60.154 57.895 0.00 0.00 32.51 4.02
517 518 1.380302 GCCAGCAGAGGGGAAAAGA 59.620 57.895 0.00 0.00 0.00 2.52
520 521 1.003233 AGCAGAGGGGAAAAGACGC 60.003 57.895 0.00 0.00 0.00 5.19
608 611 1.517257 CCACACGACTCGAGGCATC 60.517 63.158 20.47 5.20 0.00 3.91
622 625 2.513204 CATCCGTGCAGGCAGGAG 60.513 66.667 14.90 5.95 40.77 3.69
623 626 3.790437 ATCCGTGCAGGCAGGAGG 61.790 66.667 14.90 9.33 40.77 4.30
634 637 4.504916 CAGGAGGGCAGCGACGAG 62.505 72.222 0.00 0.00 0.00 4.18
680 683 6.549736 TGCTTAACTACCATATCTAGCACTGA 59.450 38.462 0.00 0.00 32.94 3.41
681 684 7.087639 GCTTAACTACCATATCTAGCACTGAG 58.912 42.308 0.00 0.00 0.00 3.35
682 685 7.255660 GCTTAACTACCATATCTAGCACTGAGT 60.256 40.741 0.00 0.00 0.00 3.41
683 686 6.398234 AACTACCATATCTAGCACTGAGTG 57.602 41.667 8.52 8.52 36.51 3.51
726 729 2.543037 ACCAACAAACCAAACCCTCT 57.457 45.000 0.00 0.00 0.00 3.69
791 794 1.354337 CCACAAGCCACAGTCGATCG 61.354 60.000 9.36 9.36 0.00 3.69
792 795 1.079819 ACAAGCCACAGTCGATCGG 60.080 57.895 16.41 1.30 0.00 4.18
795 798 2.202756 GCCACAGTCGATCGGTCC 60.203 66.667 16.41 3.74 0.00 4.46
938 944 1.056700 ACCCTGCTCTTGTGGTGTCT 61.057 55.000 0.00 0.00 0.00 3.41
984 990 3.426568 GCGAGTGGCAAGCTGACC 61.427 66.667 0.00 0.00 42.87 4.02
1110 1116 3.986006 GTGGACGAGGACACGCCA 61.986 66.667 0.00 0.00 40.02 5.69
1131 1137 2.174319 GGCGTCCTTCATCTTCGGC 61.174 63.158 0.00 0.00 39.49 5.54
1176 1182 0.889306 ACAACTACCTCTCCACGCTC 59.111 55.000 0.00 0.00 0.00 5.03
1290 1296 5.696724 CGACATCATAGGTAATTTCAGTCCC 59.303 44.000 0.00 0.00 0.00 4.46
1312 1318 5.457473 CCCTGTAACACGAAACATTTTCAAC 59.543 40.000 0.00 0.00 0.00 3.18
1322 1328 9.103048 CACGAAACATTTTCAACTACTGAATAC 57.897 33.333 0.00 0.00 43.64 1.89
1353 1364 4.186926 TGTACGTACGATGAGCTTAGAGT 58.813 43.478 24.41 0.00 0.00 3.24
1361 1372 3.739209 CGATGAGCTTAGAGTTGCCATCA 60.739 47.826 0.00 0.00 37.05 3.07
1366 1377 2.417933 GCTTAGAGTTGCCATCACACTG 59.582 50.000 0.00 0.00 0.00 3.66
1368 1379 2.645838 AGAGTTGCCATCACACTGTT 57.354 45.000 0.00 0.00 0.00 3.16
1551 1570 4.547367 GCGGGGATCCTGAACGGG 62.547 72.222 12.58 0.00 29.82 5.28
1737 1756 1.522355 CTACCTGATGCCGGTGCTG 60.522 63.158 1.90 0.00 38.71 4.41
1991 2010 0.248825 CTCCTCATCGAGCTCAACGG 60.249 60.000 15.40 6.37 0.00 4.44
1992 2011 1.880340 CCTCATCGAGCTCAACGGC 60.880 63.158 15.40 0.00 0.00 5.68
1993 2012 1.153765 CTCATCGAGCTCAACGGCA 60.154 57.895 15.40 0.00 34.17 5.69
1994 2013 0.737367 CTCATCGAGCTCAACGGCAA 60.737 55.000 15.40 0.00 34.17 4.52
1995 2014 1.014044 TCATCGAGCTCAACGGCAAC 61.014 55.000 15.40 0.00 34.17 4.17
2085 2104 0.953960 CCAACCACAGGAAGTACGGC 60.954 60.000 0.00 0.00 0.00 5.68
2316 2335 0.753479 TCAAGCTCTAGCCGGAGAGG 60.753 60.000 18.96 5.68 42.84 3.69
2334 2357 1.175983 GGGACTGGCTCGATCGATCT 61.176 60.000 19.78 2.21 0.00 2.75
2335 2358 0.039617 GGACTGGCTCGATCGATCTG 60.040 60.000 19.78 18.29 0.00 2.90
2336 2359 0.039617 GACTGGCTCGATCGATCTGG 60.040 60.000 19.78 15.18 0.00 3.86
2389 2429 0.798009 GGTTCGCGATGTTTGGCATG 60.798 55.000 10.88 0.00 38.06 4.06
2404 2444 5.981088 TTGGCATGTTTGATGTATGAACT 57.019 34.783 0.00 0.00 0.00 3.01
2591 2635 0.796312 ATTGGATCGCACACGTGAAC 59.204 50.000 25.01 12.50 41.18 3.18
2608 2664 2.035449 TGAACGATAAGCGGATCCGAAT 59.965 45.455 37.64 24.87 46.49 3.34
2611 2667 1.135774 CGATAAGCGGATCCGAATCGA 60.136 52.381 37.24 21.91 43.61 3.59
2628 2684 1.091771 CGATGACATCCACCACAGGC 61.092 60.000 9.87 0.00 0.00 4.85
2636 2692 1.072266 TCCACCACAGGCTAAACCAT 58.928 50.000 0.00 0.00 43.14 3.55
2647 2704 1.801178 GCTAAACCATCGCCTATCAGC 59.199 52.381 0.00 0.00 0.00 4.26
2660 2717 0.912487 TATCAGCCCTTCCCAACGGT 60.912 55.000 0.00 0.00 0.00 4.83
2663 2720 1.112916 CAGCCCTTCCCAACGGTTTT 61.113 55.000 0.00 0.00 0.00 2.43
2696 2754 5.116882 GCCAACGATAGACAATAACTCCTT 58.883 41.667 0.00 0.00 41.38 3.36
2697 2755 5.585047 GCCAACGATAGACAATAACTCCTTT 59.415 40.000 0.00 0.00 41.38 3.11
2704 2762 7.253684 CGATAGACAATAACTCCTTTCGAACAC 60.254 40.741 0.00 0.00 33.91 3.32
2726 2784 6.090898 ACACAGCTTACAACTTTCATCGTATC 59.909 38.462 0.00 0.00 0.00 2.24
2730 2788 5.061808 GCTTACAACTTTCATCGTATCGTGT 59.938 40.000 0.00 0.00 0.00 4.49
2734 2792 5.694910 ACAACTTTCATCGTATCGTGTTCTT 59.305 36.000 0.00 0.00 0.00 2.52
2745 2803 5.163953 CGTATCGTGTTCTTCAAAGAGCAAT 60.164 40.000 10.35 5.30 45.70 3.56
2747 2805 5.499139 TCGTGTTCTTCAAAGAGCAATTT 57.501 34.783 10.35 0.00 45.70 1.82
2760 2818 9.603921 TCAAAGAGCAATTTTTCTCAAAATCTT 57.396 25.926 0.00 0.00 41.02 2.40
2766 2824 9.185192 AGCAATTTTTCTCAAAATCTTAAGACG 57.815 29.630 7.48 0.00 41.02 4.18
2776 2834 5.568620 AAATCTTAAGACGATATGCCCCT 57.431 39.130 7.48 0.00 0.00 4.79
2778 2836 6.681729 AATCTTAAGACGATATGCCCCTTA 57.318 37.500 7.48 0.00 0.00 2.69
2782 2840 7.514721 TCTTAAGACGATATGCCCCTTAAAAT 58.485 34.615 0.00 0.00 31.47 1.82
2783 2841 7.444183 TCTTAAGACGATATGCCCCTTAAAATG 59.556 37.037 0.00 0.00 31.47 2.32
2784 2842 5.304686 AGACGATATGCCCCTTAAAATGA 57.695 39.130 0.00 0.00 0.00 2.57
2785 2843 5.690865 AGACGATATGCCCCTTAAAATGAA 58.309 37.500 0.00 0.00 0.00 2.57
2813 2871 2.476686 CGTACCGTAAAGCATCAGACGA 60.477 50.000 0.00 0.00 37.50 4.20
2830 2888 3.184986 AGACGAAACAAATCCCGTAAACG 59.815 43.478 0.00 0.00 35.22 3.60
2831 2889 2.871633 ACGAAACAAATCCCGTAAACGT 59.128 40.909 1.41 0.00 37.74 3.99
2832 2890 3.059665 ACGAAACAAATCCCGTAAACGTC 60.060 43.478 1.41 0.00 37.74 4.34
2886 2948 3.118454 CGGGACACACGCATGGAC 61.118 66.667 0.00 0.00 0.00 4.02
2893 2955 0.943835 CACACGCATGGACGAACTCA 60.944 55.000 0.00 0.00 36.70 3.41
2973 3035 0.176680 CCCGTGCTCTAGTGATGCTT 59.823 55.000 0.00 0.00 0.00 3.91
2978 3040 2.093764 GTGCTCTAGTGATGCTTCAGGT 60.094 50.000 1.91 0.00 30.85 4.00
2980 3042 3.769300 TGCTCTAGTGATGCTTCAGGTAA 59.231 43.478 1.91 0.00 30.85 2.85
2989 3051 1.003839 CTTCAGGTAACCGCTGCCA 60.004 57.895 0.00 0.00 30.62 4.92
3077 3141 3.626028 ACAGGTTCAATCAGAAAACGC 57.374 42.857 0.00 0.00 38.13 4.84
3082 3146 0.796312 TCAATCAGAAAACGCCTCGC 59.204 50.000 0.00 0.00 0.00 5.03
3119 3183 5.163581 GGTTGCTCTAATGTACGAGAACCTA 60.164 44.000 14.90 0.30 36.12 3.08
3122 3186 7.997773 TGCTCTAATGTACGAGAACCTATAT 57.002 36.000 0.00 0.00 0.00 0.86
3123 3187 8.405418 TGCTCTAATGTACGAGAACCTATATT 57.595 34.615 0.00 0.00 0.00 1.28
3124 3188 8.857098 TGCTCTAATGTACGAGAACCTATATTT 58.143 33.333 0.00 0.00 0.00 1.40
3125 3189 9.694137 GCTCTAATGTACGAGAACCTATATTTT 57.306 33.333 0.00 0.00 0.00 1.82
3238 3304 3.827008 CTAGAGATGCTAGTGCCCAAA 57.173 47.619 0.00 0.00 41.42 3.28
3239 3305 4.142609 CTAGAGATGCTAGTGCCCAAAA 57.857 45.455 0.00 0.00 41.42 2.44
3240 3306 3.439857 AGAGATGCTAGTGCCCAAAAA 57.560 42.857 0.00 0.00 38.71 1.94
3241 3307 3.973425 AGAGATGCTAGTGCCCAAAAAT 58.027 40.909 0.00 0.00 38.71 1.82
3242 3308 3.698040 AGAGATGCTAGTGCCCAAAAATG 59.302 43.478 0.00 0.00 38.71 2.32
3243 3309 3.696051 GAGATGCTAGTGCCCAAAAATGA 59.304 43.478 0.00 0.00 38.71 2.57
3244 3310 3.698040 AGATGCTAGTGCCCAAAAATGAG 59.302 43.478 0.00 0.00 38.71 2.90
3245 3311 2.170166 TGCTAGTGCCCAAAAATGAGG 58.830 47.619 0.00 0.00 38.71 3.86
3254 3320 4.316025 CCCAAAAATGAGGGTAGGAGAA 57.684 45.455 0.00 0.00 40.34 2.87
3255 3321 4.672899 CCCAAAAATGAGGGTAGGAGAAA 58.327 43.478 0.00 0.00 40.34 2.52
3256 3322 5.083821 CCCAAAAATGAGGGTAGGAGAAAA 58.916 41.667 0.00 0.00 40.34 2.29
3257 3323 5.185828 CCCAAAAATGAGGGTAGGAGAAAAG 59.814 44.000 0.00 0.00 40.34 2.27
3258 3324 5.185828 CCAAAAATGAGGGTAGGAGAAAAGG 59.814 44.000 0.00 0.00 0.00 3.11
3259 3325 5.600669 AAAATGAGGGTAGGAGAAAAGGT 57.399 39.130 0.00 0.00 0.00 3.50
3260 3326 4.576330 AATGAGGGTAGGAGAAAAGGTG 57.424 45.455 0.00 0.00 0.00 4.00
3261 3327 2.986050 TGAGGGTAGGAGAAAAGGTGT 58.014 47.619 0.00 0.00 0.00 4.16
3262 3328 3.323775 TGAGGGTAGGAGAAAAGGTGTT 58.676 45.455 0.00 0.00 0.00 3.32
3263 3329 3.720002 TGAGGGTAGGAGAAAAGGTGTTT 59.280 43.478 0.00 0.00 0.00 2.83
3264 3330 4.909088 TGAGGGTAGGAGAAAAGGTGTTTA 59.091 41.667 0.00 0.00 0.00 2.01
3265 3331 5.012768 TGAGGGTAGGAGAAAAGGTGTTTAG 59.987 44.000 0.00 0.00 0.00 1.85
3266 3332 4.288887 AGGGTAGGAGAAAAGGTGTTTAGG 59.711 45.833 0.00 0.00 0.00 2.69
3267 3333 4.042560 GGGTAGGAGAAAAGGTGTTTAGGT 59.957 45.833 0.00 0.00 0.00 3.08
3268 3334 5.249163 GGGTAGGAGAAAAGGTGTTTAGGTA 59.751 44.000 0.00 0.00 0.00 3.08
3269 3335 6.239973 GGGTAGGAGAAAAGGTGTTTAGGTAA 60.240 42.308 0.00 0.00 0.00 2.85
3270 3336 6.652481 GGTAGGAGAAAAGGTGTTTAGGTAAC 59.348 42.308 0.00 0.00 37.26 2.50
3285 3351 1.753649 GGTAACTACTCCCTCCGTTCC 59.246 57.143 0.00 0.00 0.00 3.62
3286 3352 2.622714 GGTAACTACTCCCTCCGTTCCT 60.623 54.545 0.00 0.00 0.00 3.36
3287 3353 3.372025 GGTAACTACTCCCTCCGTTCCTA 60.372 52.174 0.00 0.00 0.00 2.94
3288 3354 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
3289 3355 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3290 3356 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3291 3357 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3292 3358 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3293 3359 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
3294 3360 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3295 3361 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3296 3362 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3297 3363 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3298 3364 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3299 3365 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3300 3366 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3301 3367 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3302 3368 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3303 3369 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3304 3370 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3305 3371 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.070714 CACATCCCTCTCAGATCTGAAGATT 59.929 44.000 25.09 12.40 39.39 2.40
1 2 4.589798 CACATCCCTCTCAGATCTGAAGAT 59.410 45.833 25.09 19.73 39.39 2.40
2 3 3.959449 CACATCCCTCTCAGATCTGAAGA 59.041 47.826 25.09 20.97 39.39 2.87
3 4 3.069872 CCACATCCCTCTCAGATCTGAAG 59.930 52.174 25.09 21.87 39.39 3.02
4 5 3.036819 CCACATCCCTCTCAGATCTGAA 58.963 50.000 25.09 11.41 39.39 3.02
5 6 2.675583 CCACATCCCTCTCAGATCTGA 58.324 52.381 23.75 23.75 38.06 3.27
6 7 1.693062 CCCACATCCCTCTCAGATCTG 59.307 57.143 17.07 17.07 0.00 2.90
7 8 1.414245 CCCCACATCCCTCTCAGATCT 60.414 57.143 0.00 0.00 0.00 2.75
8 9 1.055040 CCCCACATCCCTCTCAGATC 58.945 60.000 0.00 0.00 0.00 2.75
9 10 0.401105 CCCCCACATCCCTCTCAGAT 60.401 60.000 0.00 0.00 0.00 2.90
10 11 1.003442 CCCCCACATCCCTCTCAGA 59.997 63.158 0.00 0.00 0.00 3.27
11 12 3.652687 CCCCCACATCCCTCTCAG 58.347 66.667 0.00 0.00 0.00 3.35
25 26 2.907179 CGCCCCCATCTAATCCCCC 61.907 68.421 0.00 0.00 0.00 5.40
26 27 2.757077 CGCCCCCATCTAATCCCC 59.243 66.667 0.00 0.00 0.00 4.81
27 28 2.034221 GCGCCCCCATCTAATCCC 59.966 66.667 0.00 0.00 0.00 3.85
28 29 2.034221 GGCGCCCCCATCTAATCC 59.966 66.667 18.11 0.00 0.00 3.01
29 30 2.358737 CGGCGCCCCCATCTAATC 60.359 66.667 23.46 0.00 0.00 1.75
30 31 4.643387 GCGGCGCCCCCATCTAAT 62.643 66.667 23.58 0.00 0.00 1.73
52 53 1.518133 CTGTACAGAGAGCAGCGGC 60.518 63.158 18.45 0.00 41.61 6.53
53 54 2.184323 TCTGTACAGAGAGCAGCGG 58.816 57.895 21.74 0.00 32.82 5.52
62 63 1.555533 TCTCTCCGCTCTCTGTACAGA 59.444 52.381 23.80 23.80 35.85 3.41
63 64 2.031258 TCTCTCCGCTCTCTGTACAG 57.969 55.000 17.17 17.17 0.00 2.74
64 65 2.092914 TCATCTCTCCGCTCTCTGTACA 60.093 50.000 0.00 0.00 0.00 2.90
65 66 2.566913 TCATCTCTCCGCTCTCTGTAC 58.433 52.381 0.00 0.00 0.00 2.90
66 67 3.118223 TCTTCATCTCTCCGCTCTCTGTA 60.118 47.826 0.00 0.00 0.00 2.74
67 68 2.023673 CTTCATCTCTCCGCTCTCTGT 58.976 52.381 0.00 0.00 0.00 3.41
68 69 2.296792 TCTTCATCTCTCCGCTCTCTG 58.703 52.381 0.00 0.00 0.00 3.35
69 70 2.687935 GTTCTTCATCTCTCCGCTCTCT 59.312 50.000 0.00 0.00 0.00 3.10
70 71 2.687935 AGTTCTTCATCTCTCCGCTCTC 59.312 50.000 0.00 0.00 0.00 3.20
71 72 2.426738 CAGTTCTTCATCTCTCCGCTCT 59.573 50.000 0.00 0.00 0.00 4.09
72 73 2.808244 CAGTTCTTCATCTCTCCGCTC 58.192 52.381 0.00 0.00 0.00 5.03
73 74 1.134848 GCAGTTCTTCATCTCTCCGCT 60.135 52.381 0.00 0.00 0.00 5.52
74 75 1.285578 GCAGTTCTTCATCTCTCCGC 58.714 55.000 0.00 0.00 0.00 5.54
75 76 1.480137 AGGCAGTTCTTCATCTCTCCG 59.520 52.381 0.00 0.00 0.00 4.63
76 77 2.419851 CCAGGCAGTTCTTCATCTCTCC 60.420 54.545 0.00 0.00 0.00 3.71
77 78 2.235898 ACCAGGCAGTTCTTCATCTCTC 59.764 50.000 0.00 0.00 0.00 3.20
78 79 2.235898 GACCAGGCAGTTCTTCATCTCT 59.764 50.000 0.00 0.00 0.00 3.10
79 80 2.626840 GACCAGGCAGTTCTTCATCTC 58.373 52.381 0.00 0.00 0.00 2.75
80 81 1.066573 CGACCAGGCAGTTCTTCATCT 60.067 52.381 0.00 0.00 0.00 2.90
81 82 1.363744 CGACCAGGCAGTTCTTCATC 58.636 55.000 0.00 0.00 0.00 2.92
82 83 0.036010 CCGACCAGGCAGTTCTTCAT 60.036 55.000 0.00 0.00 0.00 2.57
83 84 1.371183 CCGACCAGGCAGTTCTTCA 59.629 57.895 0.00 0.00 0.00 3.02
84 85 1.376037 CCCGACCAGGCAGTTCTTC 60.376 63.158 0.00 0.00 39.21 2.87
85 86 2.750350 CCCGACCAGGCAGTTCTT 59.250 61.111 0.00 0.00 39.21 2.52
109 110 3.849953 GTGACTTAAGCGCGGCCG 61.850 66.667 24.05 24.05 37.57 6.13
110 111 2.434359 AGTGACTTAAGCGCGGCC 60.434 61.111 8.83 0.00 0.00 6.13
111 112 2.027625 ACAGTGACTTAAGCGCGGC 61.028 57.895 8.83 0.00 0.00 6.53
112 113 1.781555 CACAGTGACTTAAGCGCGG 59.218 57.895 8.83 5.82 0.00 6.46
113 114 1.130613 GCACAGTGACTTAAGCGCG 59.869 57.895 4.15 0.00 0.00 6.86
114 115 0.164647 CTGCACAGTGACTTAAGCGC 59.835 55.000 4.15 0.00 0.00 5.92
115 116 0.164647 GCTGCACAGTGACTTAAGCG 59.835 55.000 4.15 0.00 0.00 4.68
116 117 0.164647 CGCTGCACAGTGACTTAAGC 59.835 55.000 4.15 3.87 41.24 3.09
117 118 0.164647 GCGCTGCACAGTGACTTAAG 59.835 55.000 15.12 0.00 41.24 1.85
118 119 1.227999 GGCGCTGCACAGTGACTTAA 61.228 55.000 15.12 0.00 43.45 1.85
119 120 1.667830 GGCGCTGCACAGTGACTTA 60.668 57.895 15.12 0.00 43.45 2.24
120 121 2.974698 GGCGCTGCACAGTGACTT 60.975 61.111 15.12 0.00 43.45 3.01
121 122 4.996434 GGGCGCTGCACAGTGACT 62.996 66.667 16.18 0.00 45.96 3.41
123 124 4.560743 TTGGGCGCTGCACAGTGA 62.561 61.111 15.12 0.00 45.08 3.41
124 125 4.034258 CTTGGGCGCTGCACAGTG 62.034 66.667 7.64 6.84 45.08 3.66
125 126 4.254709 TCTTGGGCGCTGCACAGT 62.255 61.111 7.64 0.00 45.08 3.55
126 127 3.429141 CTCTTGGGCGCTGCACAG 61.429 66.667 7.64 0.00 45.08 3.66
128 129 3.958147 TAGCTCTTGGGCGCTGCAC 62.958 63.158 7.64 0.00 37.05 4.57
129 130 3.670637 CTAGCTCTTGGGCGCTGCA 62.671 63.158 7.64 0.00 37.05 4.41
130 131 2.894387 CTAGCTCTTGGGCGCTGC 60.894 66.667 7.64 2.66 37.05 5.25
131 132 2.202987 CCTAGCTCTTGGGCGCTG 60.203 66.667 7.64 0.00 37.05 5.18
132 133 4.168291 GCCTAGCTCTTGGGCGCT 62.168 66.667 7.64 0.00 40.15 5.92
144 145 1.959899 CTTTGACGTGCAGCGCCTAG 61.960 60.000 2.29 0.00 46.11 3.02
145 146 2.027073 CTTTGACGTGCAGCGCCTA 61.027 57.895 2.29 0.00 46.11 3.93
146 147 3.349006 CTTTGACGTGCAGCGCCT 61.349 61.111 2.29 0.00 46.11 5.52
147 148 3.649986 ACTTTGACGTGCAGCGCC 61.650 61.111 2.29 0.00 46.11 6.53
148 149 2.425773 CACTTTGACGTGCAGCGC 60.426 61.111 0.00 0.00 46.11 5.92
150 151 1.009675 CCACACTTTGACGTGCAGC 60.010 57.895 0.00 0.00 38.45 5.25
151 152 1.009675 GCCACACTTTGACGTGCAG 60.010 57.895 0.00 0.00 38.45 4.41
152 153 2.818487 CGCCACACTTTGACGTGCA 61.818 57.895 0.00 0.00 38.45 4.57
153 154 2.052237 CGCCACACTTTGACGTGC 60.052 61.111 0.00 0.00 38.45 5.34
154 155 2.052237 GCGCCACACTTTGACGTG 60.052 61.111 0.00 0.00 40.67 4.49
155 156 2.372040 TAGGCGCCACACTTTGACGT 62.372 55.000 31.54 5.27 0.00 4.34
156 157 1.626654 CTAGGCGCCACACTTTGACG 61.627 60.000 31.54 0.00 0.00 4.35
157 158 1.912371 GCTAGGCGCCACACTTTGAC 61.912 60.000 31.54 2.97 0.00 3.18
158 159 1.671054 GCTAGGCGCCACACTTTGA 60.671 57.895 31.54 1.59 0.00 2.69
159 160 1.639298 GAGCTAGGCGCCACACTTTG 61.639 60.000 31.54 9.61 40.39 2.77
160 161 1.376037 GAGCTAGGCGCCACACTTT 60.376 57.895 31.54 9.39 40.39 2.66
161 162 1.831652 AAGAGCTAGGCGCCACACTT 61.832 55.000 31.54 22.67 40.39 3.16
162 163 0.970937 TAAGAGCTAGGCGCCACACT 60.971 55.000 31.54 21.99 40.39 3.55
163 164 0.528684 CTAAGAGCTAGGCGCCACAC 60.529 60.000 31.54 17.11 40.39 3.82
164 165 1.676678 CCTAAGAGCTAGGCGCCACA 61.677 60.000 31.54 15.42 41.02 4.17
165 166 1.068250 CCTAAGAGCTAGGCGCCAC 59.932 63.158 31.54 17.93 41.02 5.01
166 167 3.538614 CCTAAGAGCTAGGCGCCA 58.461 61.111 31.54 14.00 41.02 5.69
175 176 2.434884 TGTGCAGCGCCTAAGAGC 60.435 61.111 2.29 0.00 39.42 4.09
176 177 1.812922 CCTGTGCAGCGCCTAAGAG 60.813 63.158 2.29 0.00 0.00 2.85
177 178 2.265739 CCTGTGCAGCGCCTAAGA 59.734 61.111 2.29 0.00 0.00 2.10
178 179 2.046892 ACCTGTGCAGCGCCTAAG 60.047 61.111 2.29 0.00 0.00 2.18
179 180 2.358615 CACCTGTGCAGCGCCTAA 60.359 61.111 2.29 0.00 0.00 2.69
189 190 3.349006 GCTCCACACGCACCTGTG 61.349 66.667 0.00 0.00 45.41 3.66
190 191 4.626081 GGCTCCACACGCACCTGT 62.626 66.667 0.00 0.00 0.00 4.00
197 198 3.716006 CAGTTGCGGCTCCACACG 61.716 66.667 0.00 0.00 0.00 4.49
198 199 3.357079 CCAGTTGCGGCTCCACAC 61.357 66.667 0.00 0.00 0.00 3.82
199 200 3.555324 TCCAGTTGCGGCTCCACA 61.555 61.111 0.00 0.00 0.00 4.17
200 201 3.050275 GTCCAGTTGCGGCTCCAC 61.050 66.667 0.00 0.00 0.00 4.02
201 202 4.329545 GGTCCAGTTGCGGCTCCA 62.330 66.667 0.00 0.00 0.00 3.86
202 203 4.329545 TGGTCCAGTTGCGGCTCC 62.330 66.667 0.00 0.00 0.00 4.70
203 204 2.743928 CTGGTCCAGTTGCGGCTC 60.744 66.667 11.09 0.00 0.00 4.70
204 205 4.335647 CCTGGTCCAGTTGCGGCT 62.336 66.667 17.85 0.00 0.00 5.52
207 208 4.335647 AGCCCTGGTCCAGTTGCG 62.336 66.667 17.85 2.08 34.18 4.85
208 209 2.674380 CAGCCCTGGTCCAGTTGC 60.674 66.667 17.85 18.22 0.00 4.17
209 210 2.674380 GCAGCCCTGGTCCAGTTG 60.674 66.667 17.85 13.18 0.00 3.16
210 211 3.971702 GGCAGCCCTGGTCCAGTT 61.972 66.667 17.85 0.16 0.00 3.16
212 213 4.729918 GTGGCAGCCCTGGTCCAG 62.730 72.222 12.40 12.40 0.00 3.86
226 227 3.129502 CACATCCTGCCAGCGTGG 61.130 66.667 0.25 0.25 41.55 4.94
227 228 3.807538 GCACATCCTGCCAGCGTG 61.808 66.667 3.57 3.57 40.42 5.34
230 231 3.503363 GTCGCACATCCTGCCAGC 61.503 66.667 0.00 0.00 43.84 4.85
231 232 3.190849 CGTCGCACATCCTGCCAG 61.191 66.667 0.00 0.00 43.84 4.85
234 235 3.716539 TAGGCGTCGCACATCCTGC 62.717 63.158 20.50 0.00 43.21 4.85
235 236 1.148157 CTTAGGCGTCGCACATCCTG 61.148 60.000 20.50 0.00 0.00 3.86
236 237 1.141881 CTTAGGCGTCGCACATCCT 59.858 57.895 20.50 8.84 0.00 3.24
237 238 1.883084 CCTTAGGCGTCGCACATCC 60.883 63.158 20.50 0.35 0.00 3.51
238 239 1.883084 CCCTTAGGCGTCGCACATC 60.883 63.158 20.50 0.77 0.00 3.06
239 240 2.186903 CCCTTAGGCGTCGCACAT 59.813 61.111 20.50 6.81 0.00 3.21
240 241 4.077184 CCCCTTAGGCGTCGCACA 62.077 66.667 20.50 2.32 0.00 4.57
241 242 3.305177 TTCCCCTTAGGCGTCGCAC 62.305 63.158 20.50 8.57 34.51 5.34
242 243 2.998480 TTCCCCTTAGGCGTCGCA 60.998 61.111 20.50 0.00 34.51 5.10
243 244 2.202892 CTTCCCCTTAGGCGTCGC 60.203 66.667 9.22 9.22 34.51 5.19
244 245 2.499685 CCTTCCCCTTAGGCGTCG 59.500 66.667 0.00 0.00 34.51 5.12
249 250 2.190578 CAGCGCCTTCCCCTTAGG 59.809 66.667 2.29 0.00 35.80 2.69
250 251 2.514824 GCAGCGCCTTCCCCTTAG 60.515 66.667 2.29 0.00 0.00 2.18
251 252 3.326578 TGCAGCGCCTTCCCCTTA 61.327 61.111 2.29 0.00 0.00 2.69
255 256 3.605749 TACTGTGCAGCGCCTTCCC 62.606 63.158 2.29 0.00 0.00 3.97
256 257 2.047274 TACTGTGCAGCGCCTTCC 60.047 61.111 2.29 0.00 0.00 3.46
257 258 2.103042 CCTACTGTGCAGCGCCTTC 61.103 63.158 2.29 0.00 0.00 3.46
258 259 2.046892 CCTACTGTGCAGCGCCTT 60.047 61.111 2.29 0.00 0.00 4.35
259 260 4.087892 CCCTACTGTGCAGCGCCT 62.088 66.667 2.29 0.00 0.00 5.52
260 261 4.394712 ACCCTACTGTGCAGCGCC 62.395 66.667 2.29 0.00 0.00 6.53
261 262 3.121030 CACCCTACTGTGCAGCGC 61.121 66.667 0.00 0.00 0.00 5.92
267 268 4.373116 ACGCCGCACCCTACTGTG 62.373 66.667 0.00 0.00 39.29 3.66
268 269 4.065281 GACGCCGCACCCTACTGT 62.065 66.667 0.00 0.00 0.00 3.55
269 270 4.814294 GGACGCCGCACCCTACTG 62.814 72.222 0.00 0.00 0.00 2.74
271 272 4.814294 CTGGACGCCGCACCCTAC 62.814 72.222 0.00 0.00 0.00 3.18
276 277 3.723348 GAAACCTGGACGCCGCAC 61.723 66.667 0.00 0.00 0.00 5.34
290 291 4.877619 TTGGTGTGGCGCCCGAAA 62.878 61.111 26.77 8.56 32.22 3.46
291 292 4.877619 TTTGGTGTGGCGCCCGAA 62.878 61.111 26.77 11.69 32.22 4.30
304 305 0.397941 TCACTCTGCTGACCCTTTGG 59.602 55.000 0.00 0.00 37.80 3.28
305 306 2.260844 TTCACTCTGCTGACCCTTTG 57.739 50.000 0.00 0.00 0.00 2.77
306 307 3.515602 ATTTCACTCTGCTGACCCTTT 57.484 42.857 0.00 0.00 0.00 3.11
307 308 3.515602 AATTTCACTCTGCTGACCCTT 57.484 42.857 0.00 0.00 0.00 3.95
308 309 3.515602 AAATTTCACTCTGCTGACCCT 57.484 42.857 0.00 0.00 0.00 4.34
309 310 4.590850 AAAAATTTCACTCTGCTGACCC 57.409 40.909 0.00 0.00 0.00 4.46
327 328 6.015856 TCACAAACTGACCTGTTCAAGAAAAA 60.016 34.615 0.00 0.00 32.21 1.94
328 329 5.475220 TCACAAACTGACCTGTTCAAGAAAA 59.525 36.000 0.00 0.00 32.21 2.29
329 330 5.007034 TCACAAACTGACCTGTTCAAGAAA 58.993 37.500 0.00 0.00 32.21 2.52
330 331 4.584874 TCACAAACTGACCTGTTCAAGAA 58.415 39.130 0.00 0.00 32.21 2.52
331 332 4.214986 TCACAAACTGACCTGTTCAAGA 57.785 40.909 0.00 0.00 32.21 3.02
332 333 5.505173 AATCACAAACTGACCTGTTCAAG 57.495 39.130 0.00 0.00 32.21 3.02
333 334 5.417266 TCAAATCACAAACTGACCTGTTCAA 59.583 36.000 0.00 0.00 32.21 2.69
334 335 4.946772 TCAAATCACAAACTGACCTGTTCA 59.053 37.500 0.00 0.00 0.00 3.18
335 336 5.499139 TCAAATCACAAACTGACCTGTTC 57.501 39.130 0.00 0.00 0.00 3.18
336 337 6.469782 AATCAAATCACAAACTGACCTGTT 57.530 33.333 0.00 0.00 0.00 3.16
337 338 6.322201 AGAAATCAAATCACAAACTGACCTGT 59.678 34.615 0.00 0.00 0.00 4.00
338 339 6.639686 CAGAAATCAAATCACAAACTGACCTG 59.360 38.462 0.00 0.00 0.00 4.00
339 340 6.736794 GCAGAAATCAAATCACAAACTGACCT 60.737 38.462 0.00 0.00 0.00 3.85
340 341 5.403466 GCAGAAATCAAATCACAAACTGACC 59.597 40.000 0.00 0.00 0.00 4.02
341 342 5.403466 GGCAGAAATCAAATCACAAACTGAC 59.597 40.000 0.00 0.00 0.00 3.51
342 343 5.302568 AGGCAGAAATCAAATCACAAACTGA 59.697 36.000 0.00 0.00 0.00 3.41
343 344 5.535333 AGGCAGAAATCAAATCACAAACTG 58.465 37.500 0.00 0.00 0.00 3.16
344 345 5.302568 TGAGGCAGAAATCAAATCACAAACT 59.697 36.000 0.00 0.00 0.00 2.66
345 346 5.531634 TGAGGCAGAAATCAAATCACAAAC 58.468 37.500 0.00 0.00 0.00 2.93
346 347 5.279106 CCTGAGGCAGAAATCAAATCACAAA 60.279 40.000 0.00 0.00 32.44 2.83
347 348 4.219070 CCTGAGGCAGAAATCAAATCACAA 59.781 41.667 0.00 0.00 32.44 3.33
348 349 3.760151 CCTGAGGCAGAAATCAAATCACA 59.240 43.478 0.00 0.00 32.44 3.58
349 350 3.760684 ACCTGAGGCAGAAATCAAATCAC 59.239 43.478 0.00 0.00 32.44 3.06
350 351 4.012374 GACCTGAGGCAGAAATCAAATCA 58.988 43.478 0.00 0.00 32.44 2.57
351 352 4.012374 TGACCTGAGGCAGAAATCAAATC 58.988 43.478 0.00 0.00 32.44 2.17
352 353 4.038271 TGACCTGAGGCAGAAATCAAAT 57.962 40.909 0.00 0.00 32.44 2.32
353 354 3.507162 TGACCTGAGGCAGAAATCAAA 57.493 42.857 0.00 0.00 32.44 2.69
354 355 3.507162 TTGACCTGAGGCAGAAATCAA 57.493 42.857 0.00 0.00 32.44 2.57
355 356 3.507162 TTTGACCTGAGGCAGAAATCA 57.493 42.857 0.00 0.00 32.44 2.57
356 357 4.096081 CAGATTTGACCTGAGGCAGAAATC 59.904 45.833 16.71 16.71 34.90 2.17
357 358 4.015084 CAGATTTGACCTGAGGCAGAAAT 58.985 43.478 0.00 0.18 32.44 2.17
358 359 3.181440 ACAGATTTGACCTGAGGCAGAAA 60.181 43.478 0.00 0.00 35.69 2.52
359 360 2.373169 ACAGATTTGACCTGAGGCAGAA 59.627 45.455 0.00 0.00 35.69 3.02
360 361 1.980765 ACAGATTTGACCTGAGGCAGA 59.019 47.619 0.00 0.00 35.69 4.26
361 362 2.082231 CACAGATTTGACCTGAGGCAG 58.918 52.381 0.00 0.00 35.69 4.85
362 363 1.699083 TCACAGATTTGACCTGAGGCA 59.301 47.619 0.00 0.00 35.69 4.75
363 364 2.479566 TCACAGATTTGACCTGAGGC 57.520 50.000 0.00 0.00 35.69 4.70
364 365 5.123502 CAGAAATCACAGATTTGACCTGAGG 59.876 44.000 9.49 0.00 35.69 3.86
365 366 5.391736 GCAGAAATCACAGATTTGACCTGAG 60.392 44.000 17.02 0.00 35.69 3.35
366 367 4.456911 GCAGAAATCACAGATTTGACCTGA 59.543 41.667 17.02 0.00 35.69 3.86
367 368 4.380233 GGCAGAAATCACAGATTTGACCTG 60.380 45.833 9.49 10.98 37.64 4.00
368 369 3.760684 GGCAGAAATCACAGATTTGACCT 59.239 43.478 9.49 0.00 0.00 3.85
369 370 3.119352 GGGCAGAAATCACAGATTTGACC 60.119 47.826 9.49 5.32 0.00 4.02
370 371 3.119352 GGGGCAGAAATCACAGATTTGAC 60.119 47.826 9.49 0.00 0.00 3.18
371 372 3.091545 GGGGCAGAAATCACAGATTTGA 58.908 45.455 9.49 0.00 0.00 2.69
372 373 2.827322 TGGGGCAGAAATCACAGATTTG 59.173 45.455 9.49 0.00 0.00 2.32
373 374 2.827921 GTGGGGCAGAAATCACAGATTT 59.172 45.455 4.77 4.77 0.00 2.17
374 375 2.225091 TGTGGGGCAGAAATCACAGATT 60.225 45.455 0.00 0.00 35.52 2.40
375 376 1.355381 TGTGGGGCAGAAATCACAGAT 59.645 47.619 0.00 0.00 35.52 2.90
376 377 0.770499 TGTGGGGCAGAAATCACAGA 59.230 50.000 0.00 0.00 35.52 3.41
377 378 3.344703 TGTGGGGCAGAAATCACAG 57.655 52.632 0.00 0.00 35.52 3.66
386 387 0.038744 AGATGGTTTCTGTGGGGCAG 59.961 55.000 0.00 0.00 46.34 4.85
387 388 0.251297 CAGATGGTTTCTGTGGGGCA 60.251 55.000 0.00 0.00 45.79 5.36
388 389 2.571548 CAGATGGTTTCTGTGGGGC 58.428 57.895 0.00 0.00 45.79 5.80
454 455 2.867429 CCTGAAATGACCAAACGATGC 58.133 47.619 0.00 0.00 0.00 3.91
466 467 1.824852 GGGTTTAGGTGGCCTGAAATG 59.175 52.381 3.32 0.00 30.99 2.32
503 504 2.041115 GGCGTCTTTTCCCCTCTGC 61.041 63.158 0.00 0.00 0.00 4.26
506 507 2.436115 CGGGCGTCTTTTCCCCTC 60.436 66.667 0.00 0.00 39.39 4.30
572 573 4.175489 AGACGTATGCGCGCGACT 62.175 61.111 37.18 21.87 42.83 4.18
617 620 4.504916 CTCGTCGCTGCCCTCCTG 62.505 72.222 0.00 0.00 0.00 3.86
625 628 4.838486 GTCTCGCCCTCGTCGCTG 62.838 72.222 0.00 0.00 36.96 5.18
628 631 2.743752 TTACGTCTCGCCCTCGTCG 61.744 63.158 0.00 0.00 38.69 5.12
629 632 1.226239 GTTACGTCTCGCCCTCGTC 60.226 63.158 0.00 0.00 38.69 4.20
630 633 2.873288 GTTACGTCTCGCCCTCGT 59.127 61.111 0.00 0.00 40.78 4.18
631 634 2.277120 CGTTACGTCTCGCCCTCG 60.277 66.667 0.00 0.00 0.00 4.63
632 635 2.578981 GCGTTACGTCTCGCCCTC 60.579 66.667 21.10 0.48 45.54 4.30
637 640 1.717429 GCAAACAAGCGTTACGTCTCG 60.717 52.381 6.63 0.00 33.99 4.04
685 688 1.345089 TGACGCACTTAAGGCTTGGTA 59.655 47.619 10.69 0.00 0.00 3.25
688 691 2.604614 GGTTTGACGCACTTAAGGCTTG 60.605 50.000 10.69 0.00 0.00 4.01
689 692 1.607148 GGTTTGACGCACTTAAGGCTT 59.393 47.619 4.58 4.58 0.00 4.35
690 693 1.235724 GGTTTGACGCACTTAAGGCT 58.764 50.000 7.53 0.00 0.00 4.58
691 694 0.948678 TGGTTTGACGCACTTAAGGC 59.051 50.000 7.53 6.65 0.00 4.35
692 695 2.356382 TGTTGGTTTGACGCACTTAAGG 59.644 45.455 7.53 0.00 0.00 2.69
693 696 3.684103 TGTTGGTTTGACGCACTTAAG 57.316 42.857 0.00 0.00 0.00 1.85
694 697 4.167268 GTTTGTTGGTTTGACGCACTTAA 58.833 39.130 0.00 0.00 0.00 1.85
695 698 3.427773 GGTTTGTTGGTTTGACGCACTTA 60.428 43.478 0.00 0.00 0.00 2.24
696 699 2.601804 GTTTGTTGGTTTGACGCACTT 58.398 42.857 0.00 0.00 0.00 3.16
697 700 1.135228 GGTTTGTTGGTTTGACGCACT 60.135 47.619 0.00 0.00 0.00 4.40
698 701 1.273688 GGTTTGTTGGTTTGACGCAC 58.726 50.000 0.00 0.00 0.00 5.34
726 729 4.443457 GCTTGATATGGAAGCTCAGTGGTA 60.443 45.833 8.29 0.00 42.21 3.25
791 794 1.227853 AAGAACACACGGCTGGACC 60.228 57.895 0.00 0.00 0.00 4.46
792 795 0.249911 AGAAGAACACACGGCTGGAC 60.250 55.000 0.00 0.00 0.00 4.02
795 798 0.951040 GGGAGAAGAACACACGGCTG 60.951 60.000 0.00 0.00 0.00 4.85
913 917 1.202698 CCACAAGAGCAGGGTATAGGC 60.203 57.143 0.00 0.00 0.00 3.93
914 918 2.119495 ACCACAAGAGCAGGGTATAGG 58.881 52.381 0.00 0.00 0.00 2.57
915 919 2.501723 ACACCACAAGAGCAGGGTATAG 59.498 50.000 0.00 0.00 31.05 1.31
938 944 1.728074 CGCACGTACGAACTGAGCA 60.728 57.895 24.41 0.00 34.06 4.26
984 990 1.164662 CCATGCAGATCAAGCCTCGG 61.165 60.000 7.58 2.50 0.00 4.63
1064 1070 2.294078 CCTCTCACCCTCACCACCC 61.294 68.421 0.00 0.00 0.00 4.61
1176 1182 1.026718 GGTTCATGTCGGCCTTGGAG 61.027 60.000 0.00 0.00 0.00 3.86
1290 1296 8.120465 AGTAGTTGAAAATGTTTCGTGTTACAG 58.880 33.333 0.00 0.00 0.00 2.74
1322 1328 5.342525 GCTCATCGTACGTACAAGGATAATG 59.657 44.000 24.50 14.38 0.00 1.90
1368 1379 6.255215 CAACTCGTGTTGCTTCTTAGAAAAA 58.745 36.000 16.49 0.00 45.57 1.94
1385 1401 0.681733 ACAGAGTGATGGCAACTCGT 59.318 50.000 12.38 10.76 35.79 4.18
1417 1435 5.068215 TCCCCTGAAAAATGGAGTTTACA 57.932 39.130 0.00 0.00 0.00 2.41
1536 1555 2.908796 GTCCCGTTCAGGATCCCC 59.091 66.667 8.55 0.00 45.00 4.81
1632 1651 2.034687 TTCTCCTTGCCCAGCAGC 59.965 61.111 0.00 0.00 40.61 5.25
1962 1981 2.043852 ATGAGGAGGTCGCGGAGT 60.044 61.111 6.13 0.00 0.00 3.85
2308 2327 3.151022 GAGCCAGTCCCTCTCCGG 61.151 72.222 0.00 0.00 0.00 5.14
2316 2335 0.039617 CAGATCGATCGAGCCAGTCC 60.040 60.000 28.21 8.70 0.00 3.85
2379 2402 5.718724 TCATACATCAAACATGCCAAACA 57.281 34.783 0.00 0.00 0.00 2.83
2389 2429 7.386299 CCCATAGCTAGAGTTCATACATCAAAC 59.614 40.741 0.00 0.00 0.00 2.93
2404 2444 1.883732 GCGATCGCCCATAGCTAGA 59.116 57.895 29.48 0.00 40.39 2.43
2458 2499 5.857268 AGCCTCTGCATTTGTATTGTTTTT 58.143 33.333 0.00 0.00 41.13 1.94
2591 2635 1.135774 TCGATTCGGATCCGCTTATCG 60.136 52.381 34.88 34.88 41.40 2.92
2608 2664 0.536724 CCTGTGGTGGATGTCATCGA 59.463 55.000 6.74 0.00 0.00 3.59
2611 2667 1.583556 TAGCCTGTGGTGGATGTCAT 58.416 50.000 0.00 0.00 0.00 3.06
2628 2684 2.417719 GGCTGATAGGCGATGGTTTAG 58.582 52.381 0.00 0.00 0.00 1.85
2636 2692 2.140792 GGGAAGGGCTGATAGGCGA 61.141 63.158 0.00 0.00 42.43 5.54
2642 2699 1.789576 AACCGTTGGGAAGGGCTGAT 61.790 55.000 0.00 0.00 40.03 2.90
2647 2704 1.614903 GGTAAAAACCGTTGGGAAGGG 59.385 52.381 0.00 0.00 42.07 3.95
2660 2717 2.865079 TCGTTGGCCTCATGGTAAAAA 58.135 42.857 3.32 0.00 35.27 1.94
2663 2720 3.035363 TCTATCGTTGGCCTCATGGTAA 58.965 45.455 3.32 0.00 35.27 2.85
2696 2754 4.632251 TGAAAGTTGTAAGCTGTGTTCGAA 59.368 37.500 0.00 0.00 0.00 3.71
2697 2755 4.185394 TGAAAGTTGTAAGCTGTGTTCGA 58.815 39.130 0.00 0.00 0.00 3.71
2704 2762 5.288712 ACGATACGATGAAAGTTGTAAGCTG 59.711 40.000 0.00 0.00 0.00 4.24
2726 2784 6.473455 AGAAAAATTGCTCTTTGAAGAACACG 59.527 34.615 0.00 0.00 31.40 4.49
2730 2788 9.434420 TTTTGAGAAAAATTGCTCTTTGAAGAA 57.566 25.926 2.93 0.00 34.03 2.52
2734 2792 9.603921 AAGATTTTGAGAAAAATTGCTCTTTGA 57.396 25.926 2.93 0.00 32.92 2.69
2747 2805 8.612619 GGCATATCGTCTTAAGATTTTGAGAAA 58.387 33.333 8.75 0.00 31.57 2.52
2760 2818 6.833041 TCATTTTAAGGGGCATATCGTCTTA 58.167 36.000 0.00 0.00 0.00 2.10
2768 2826 8.532819 ACGTAAATTTTCATTTTAAGGGGCATA 58.467 29.630 0.00 0.00 34.29 3.14
2800 2858 4.321230 GGGATTTGTTTCGTCTGATGCTTT 60.321 41.667 0.00 0.00 0.00 3.51
2813 2871 5.062558 CGATAGACGTTTACGGGATTTGTTT 59.937 40.000 7.24 0.00 44.95 2.83
2875 2937 0.249699 TTGAGTTCGTCCATGCGTGT 60.250 50.000 4.96 0.00 0.00 4.49
2886 2948 2.380410 CGGCCGGAGTTTGAGTTCG 61.380 63.158 20.10 0.00 0.00 3.95
2893 2955 2.627839 TTTTGGGTCGGCCGGAGTTT 62.628 55.000 27.83 0.00 34.97 2.66
2930 2992 3.570638 CGGAGCATTGCCAGAGCG 61.571 66.667 4.70 0.00 44.31 5.03
2963 3025 2.418197 GCGGTTACCTGAAGCATCACTA 60.418 50.000 0.00 0.00 35.11 2.74
2965 3027 0.727398 GCGGTTACCTGAAGCATCAC 59.273 55.000 0.00 0.00 35.11 3.06
2973 3035 1.003839 CTTGGCAGCGGTTACCTGA 60.004 57.895 0.00 0.00 32.03 3.86
2989 3051 3.780173 GAGCAGGCGGAGGAGCTT 61.780 66.667 0.00 0.00 37.48 3.74
3035 3099 6.112734 TGTAAACCAGTCAATGCCATAGTAG 58.887 40.000 0.00 0.00 0.00 2.57
3040 3104 3.091545 CCTGTAAACCAGTCAATGCCAT 58.908 45.455 0.00 0.00 39.74 4.40
3045 3109 6.068010 TGATTGAACCTGTAAACCAGTCAAT 58.932 36.000 7.49 7.49 43.86 2.57
3065 3129 2.380084 TAGCGAGGCGTTTTCTGATT 57.620 45.000 0.00 0.00 0.00 2.57
3066 3130 2.604046 ATAGCGAGGCGTTTTCTGAT 57.396 45.000 0.00 0.00 0.00 2.90
3070 3134 3.120782 CCGTTATATAGCGAGGCGTTTTC 59.879 47.826 19.14 0.00 31.27 2.29
3077 3141 4.174009 CAACCATCCGTTATATAGCGAGG 58.826 47.826 19.14 17.91 31.77 4.63
3082 3146 8.035394 ACATTAGAGCAACCATCCGTTATATAG 58.965 37.037 0.00 0.00 31.77 1.31
3125 3189 9.603921 CCTGTAAAATAGTAGATCCCGTAAAAA 57.396 33.333 0.00 0.00 0.00 1.94
3126 3190 8.980596 TCCTGTAAAATAGTAGATCCCGTAAAA 58.019 33.333 0.00 0.00 0.00 1.52
3127 3191 8.537728 TCCTGTAAAATAGTAGATCCCGTAAA 57.462 34.615 0.00 0.00 0.00 2.01
3131 3195 7.469537 AGATCCTGTAAAATAGTAGATCCCG 57.530 40.000 0.00 0.00 0.00 5.14
3139 3203 9.975218 ACATACCAAAAGATCCTGTAAAATAGT 57.025 29.630 0.00 0.00 0.00 2.12
3234 3300 5.185828 CCTTTTCTCCTACCCTCATTTTTGG 59.814 44.000 0.00 0.00 0.00 3.28
3235 3301 5.775195 ACCTTTTCTCCTACCCTCATTTTTG 59.225 40.000 0.00 0.00 0.00 2.44
3236 3302 5.775195 CACCTTTTCTCCTACCCTCATTTTT 59.225 40.000 0.00 0.00 0.00 1.94
3237 3303 5.162980 ACACCTTTTCTCCTACCCTCATTTT 60.163 40.000 0.00 0.00 0.00 1.82
3238 3304 4.354087 ACACCTTTTCTCCTACCCTCATTT 59.646 41.667 0.00 0.00 0.00 2.32
3239 3305 3.916989 ACACCTTTTCTCCTACCCTCATT 59.083 43.478 0.00 0.00 0.00 2.57
3240 3306 3.532102 ACACCTTTTCTCCTACCCTCAT 58.468 45.455 0.00 0.00 0.00 2.90
3241 3307 2.986050 ACACCTTTTCTCCTACCCTCA 58.014 47.619 0.00 0.00 0.00 3.86
3242 3308 4.368565 AAACACCTTTTCTCCTACCCTC 57.631 45.455 0.00 0.00 0.00 4.30
3243 3309 4.288887 CCTAAACACCTTTTCTCCTACCCT 59.711 45.833 0.00 0.00 0.00 4.34
3244 3310 4.042560 ACCTAAACACCTTTTCTCCTACCC 59.957 45.833 0.00 0.00 0.00 3.69
3245 3311 5.238624 ACCTAAACACCTTTTCTCCTACC 57.761 43.478 0.00 0.00 0.00 3.18
3246 3312 7.448420 AGTTACCTAAACACCTTTTCTCCTAC 58.552 38.462 0.00 0.00 40.83 3.18
3247 3313 7.622502 AGTTACCTAAACACCTTTTCTCCTA 57.377 36.000 0.00 0.00 40.83 2.94
3248 3314 6.511017 AGTTACCTAAACACCTTTTCTCCT 57.489 37.500 0.00 0.00 40.83 3.69
3249 3315 7.448420 AGTAGTTACCTAAACACCTTTTCTCC 58.552 38.462 0.00 0.00 40.83 3.71
3250 3316 7.601886 GGAGTAGTTACCTAAACACCTTTTCTC 59.398 40.741 0.00 0.00 40.83 2.87
3251 3317 7.448420 GGAGTAGTTACCTAAACACCTTTTCT 58.552 38.462 0.00 0.00 40.83 2.52
3252 3318 6.652481 GGGAGTAGTTACCTAAACACCTTTTC 59.348 42.308 0.00 0.00 40.83 2.29
3253 3319 6.331042 AGGGAGTAGTTACCTAAACACCTTTT 59.669 38.462 0.00 0.00 40.83 2.27
3254 3320 5.848369 AGGGAGTAGTTACCTAAACACCTTT 59.152 40.000 0.00 0.00 40.83 3.11
3255 3321 5.409712 AGGGAGTAGTTACCTAAACACCTT 58.590 41.667 0.00 0.00 40.83 3.50
3256 3322 5.020941 AGGGAGTAGTTACCTAAACACCT 57.979 43.478 0.00 0.00 40.83 4.00
3257 3323 4.161189 GGAGGGAGTAGTTACCTAAACACC 59.839 50.000 0.00 0.00 40.83 4.16
3258 3324 4.142293 CGGAGGGAGTAGTTACCTAAACAC 60.142 50.000 0.00 0.00 40.83 3.32
3259 3325 4.019174 CGGAGGGAGTAGTTACCTAAACA 58.981 47.826 0.00 0.00 40.83 2.83
3260 3326 4.019858 ACGGAGGGAGTAGTTACCTAAAC 58.980 47.826 0.00 0.00 38.46 2.01
3261 3327 4.322057 ACGGAGGGAGTAGTTACCTAAA 57.678 45.455 0.00 0.00 34.02 1.85
3262 3328 4.273318 GAACGGAGGGAGTAGTTACCTAA 58.727 47.826 0.00 0.00 34.02 2.69
3263 3329 3.372025 GGAACGGAGGGAGTAGTTACCTA 60.372 52.174 0.00 0.00 34.02 3.08
3264 3330 2.622714 GGAACGGAGGGAGTAGTTACCT 60.623 54.545 0.00 0.00 37.31 3.08
3265 3331 1.753649 GGAACGGAGGGAGTAGTTACC 59.246 57.143 0.00 0.00 0.00 2.85
3266 3332 2.732763 AGGAACGGAGGGAGTAGTTAC 58.267 52.381 0.00 0.00 0.00 2.50
3267 3333 4.591321 TTAGGAACGGAGGGAGTAGTTA 57.409 45.455 0.00 0.00 0.00 2.24
3268 3334 3.463048 TTAGGAACGGAGGGAGTAGTT 57.537 47.619 0.00 0.00 0.00 2.24
3269 3335 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
3270 3336 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
3271 3337 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3272 3338 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3273 3339 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3274 3340 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3275 3341 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3276 3342 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3277 3343 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3278 3344 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3279 3345 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.