Multiple sequence alignment - TraesCS2A01G118400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G118400 chr2A 100.000 2648 0 0 1 2648 69018797 69021444 0.000000e+00 4891.0
1 TraesCS2A01G118400 chr2A 94.306 966 50 4 1688 2648 712941459 712942424 0.000000e+00 1474.0
2 TraesCS2A01G118400 chr2A 93.977 963 54 4 1688 2648 680178935 680179895 0.000000e+00 1454.0
3 TraesCS2A01G118400 chr6A 94.710 964 44 7 1688 2648 230006017 230005058 0.000000e+00 1491.0
4 TraesCS2A01G118400 chr6A 94.087 964 53 4 1688 2648 457522547 457523509 0.000000e+00 1461.0
5 TraesCS2A01G118400 chr6A 93.983 964 55 3 1688 2648 363170602 363171565 0.000000e+00 1456.0
6 TraesCS2A01G118400 chr7A 94.191 964 53 3 1688 2648 140413096 140412133 0.000000e+00 1467.0
7 TraesCS2A01G118400 chr7A 79.114 316 64 2 1375 1690 33525285 33525598 1.600000e-52 217.0
8 TraesCS2A01G118400 chr4A 94.185 963 52 4 1688 2648 461536583 461537543 0.000000e+00 1465.0
9 TraesCS2A01G118400 chr5A 94.087 964 51 6 1688 2648 192417773 192418733 0.000000e+00 1459.0
10 TraesCS2A01G118400 chr5A 93.977 963 55 3 1688 2648 62158599 62157638 0.000000e+00 1454.0
11 TraesCS2A01G118400 chr5A 96.756 524 16 1 1166 1689 477709590 477709068 0.000000e+00 872.0
12 TraesCS2A01G118400 chr7D 75.846 1478 349 8 215 1688 612052079 612050606 0.000000e+00 745.0
13 TraesCS2A01G118400 chr7D 74.501 851 199 11 843 1690 611872575 611873410 1.170000e-93 353.0
14 TraesCS2A01G118400 chr5D 76.134 507 111 7 1192 1693 55017022 55016521 9.400000e-65 257.0
15 TraesCS2A01G118400 chr5D 81.028 253 44 3 1442 1691 507179877 507180128 5.780000e-47 198.0
16 TraesCS2A01G118400 chr5D 75.879 199 44 4 11 207 514413609 514413805 6.030000e-17 99.0
17 TraesCS2A01G118400 chr6B 80.000 260 49 3 1430 1688 62732204 62731947 3.480000e-44 189.0
18 TraesCS2A01G118400 chr1A 80.833 240 43 3 1454 1691 339170338 339170576 4.500000e-43 185.0
19 TraesCS2A01G118400 chr1A 75.658 304 52 12 13 312 171467481 171467766 5.950000e-27 132.0
20 TraesCS2A01G118400 chr1A 77.273 198 43 2 11 207 321286023 321285827 5.990000e-22 115.0
21 TraesCS2A01G118400 chr1A 72.990 311 74 10 44 349 571570689 571570384 1.680000e-17 100.0
22 TraesCS2A01G118400 chr1B 77.259 321 65 8 1373 1690 31526751 31526436 5.820000e-42 182.0
23 TraesCS2A01G118400 chr1B 74.648 355 68 12 13 363 250411409 250411073 1.280000e-28 137.0
24 TraesCS2A01G118400 chr1B 77.108 166 34 4 44 207 112699781 112699618 2.810000e-15 93.5
25 TraesCS2A01G118400 chr2D 73.633 311 72 10 44 349 600584508 600584813 7.750000e-21 111.0
26 TraesCS2A01G118400 chr3B 75.879 199 44 4 11 207 2894051 2894247 6.030000e-17 99.0
27 TraesCS2A01G118400 chr3A 75.377 199 45 4 11 207 709119350 709119546 2.810000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G118400 chr2A 69018797 69021444 2647 False 4891 4891 100.000 1 2648 1 chr2A.!!$F1 2647
1 TraesCS2A01G118400 chr2A 712941459 712942424 965 False 1474 1474 94.306 1688 2648 1 chr2A.!!$F3 960
2 TraesCS2A01G118400 chr2A 680178935 680179895 960 False 1454 1454 93.977 1688 2648 1 chr2A.!!$F2 960
3 TraesCS2A01G118400 chr6A 230005058 230006017 959 True 1491 1491 94.710 1688 2648 1 chr6A.!!$R1 960
4 TraesCS2A01G118400 chr6A 457522547 457523509 962 False 1461 1461 94.087 1688 2648 1 chr6A.!!$F2 960
5 TraesCS2A01G118400 chr6A 363170602 363171565 963 False 1456 1456 93.983 1688 2648 1 chr6A.!!$F1 960
6 TraesCS2A01G118400 chr7A 140412133 140413096 963 True 1467 1467 94.191 1688 2648 1 chr7A.!!$R1 960
7 TraesCS2A01G118400 chr4A 461536583 461537543 960 False 1465 1465 94.185 1688 2648 1 chr4A.!!$F1 960
8 TraesCS2A01G118400 chr5A 192417773 192418733 960 False 1459 1459 94.087 1688 2648 1 chr5A.!!$F1 960
9 TraesCS2A01G118400 chr5A 62157638 62158599 961 True 1454 1454 93.977 1688 2648 1 chr5A.!!$R1 960
10 TraesCS2A01G118400 chr5A 477709068 477709590 522 True 872 872 96.756 1166 1689 1 chr5A.!!$R2 523
11 TraesCS2A01G118400 chr7D 612050606 612052079 1473 True 745 745 75.846 215 1688 1 chr7D.!!$R1 1473
12 TraesCS2A01G118400 chr7D 611872575 611873410 835 False 353 353 74.501 843 1690 1 chr7D.!!$F1 847
13 TraesCS2A01G118400 chr5D 55016521 55017022 501 True 257 257 76.134 1192 1693 1 chr5D.!!$R1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 167 0.036732 TTGGCGCCTGATTGAGAACT 59.963 50.0 29.70 0.0 0.00 3.01 F
926 928 0.108756 GTACCTGGTCGTTCTGGAGC 60.109 60.0 0.63 0.0 35.07 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1076 1078 0.025001 GATCGGTTGACATGAACGCG 59.975 55.0 3.53 3.53 0.0 6.01 R
2526 2539 0.984995 GGTAGCTTCCCAGAGGTGTT 59.015 55.0 0.00 0.00 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.565046 ATTGCATTTTTGGTGGGGTG 57.435 45.000 0.00 0.00 0.00 4.61
23 24 1.500474 TTGCATTTTTGGTGGGGTGA 58.500 45.000 0.00 0.00 0.00 4.02
24 25 0.755686 TGCATTTTTGGTGGGGTGAC 59.244 50.000 0.00 0.00 0.00 3.67
25 26 0.755686 GCATTTTTGGTGGGGTGACA 59.244 50.000 0.00 0.00 0.00 3.58
26 27 1.270252 GCATTTTTGGTGGGGTGACAG 60.270 52.381 0.00 0.00 0.00 3.51
27 28 2.315176 CATTTTTGGTGGGGTGACAGA 58.685 47.619 0.00 0.00 0.00 3.41
28 29 2.065899 TTTTTGGTGGGGTGACAGAG 57.934 50.000 0.00 0.00 0.00 3.35
29 30 1.217916 TTTTGGTGGGGTGACAGAGA 58.782 50.000 0.00 0.00 0.00 3.10
30 31 0.764890 TTTGGTGGGGTGACAGAGAG 59.235 55.000 0.00 0.00 0.00 3.20
31 32 1.127567 TTGGTGGGGTGACAGAGAGG 61.128 60.000 0.00 0.00 0.00 3.69
32 33 1.229209 GGTGGGGTGACAGAGAGGA 60.229 63.158 0.00 0.00 0.00 3.71
33 34 0.618968 GGTGGGGTGACAGAGAGGAT 60.619 60.000 0.00 0.00 0.00 3.24
34 35 0.827368 GTGGGGTGACAGAGAGGATC 59.173 60.000 0.00 0.00 0.00 3.36
35 36 0.413434 TGGGGTGACAGAGAGGATCA 59.587 55.000 0.00 0.00 37.82 2.92
36 37 1.203300 TGGGGTGACAGAGAGGATCAA 60.203 52.381 0.00 0.00 37.82 2.57
37 38 1.208293 GGGGTGACAGAGAGGATCAAC 59.792 57.143 0.00 0.00 37.82 3.18
38 39 1.134965 GGGTGACAGAGAGGATCAACG 60.135 57.143 0.00 0.00 37.82 4.10
39 40 1.546476 GGTGACAGAGAGGATCAACGT 59.454 52.381 0.00 0.00 37.82 3.99
40 41 2.753452 GGTGACAGAGAGGATCAACGTA 59.247 50.000 0.00 0.00 37.82 3.57
41 42 3.192844 GGTGACAGAGAGGATCAACGTAA 59.807 47.826 0.00 0.00 37.82 3.18
42 43 4.321750 GGTGACAGAGAGGATCAACGTAAA 60.322 45.833 0.00 0.00 37.82 2.01
43 44 5.227908 GTGACAGAGAGGATCAACGTAAAA 58.772 41.667 0.00 0.00 37.82 1.52
44 45 5.869888 GTGACAGAGAGGATCAACGTAAAAT 59.130 40.000 0.00 0.00 37.82 1.82
45 46 5.869344 TGACAGAGAGGATCAACGTAAAATG 59.131 40.000 0.00 0.00 37.82 2.32
46 47 4.631813 ACAGAGAGGATCAACGTAAAATGC 59.368 41.667 0.00 0.00 37.82 3.56
47 48 4.631377 CAGAGAGGATCAACGTAAAATGCA 59.369 41.667 0.00 0.00 37.82 3.96
48 49 5.295292 CAGAGAGGATCAACGTAAAATGCAT 59.705 40.000 0.00 0.00 37.82 3.96
49 50 5.882557 AGAGAGGATCAACGTAAAATGCATT 59.117 36.000 5.99 5.99 37.82 3.56
50 51 5.883661 AGAGGATCAACGTAAAATGCATTG 58.116 37.500 13.82 2.58 37.82 2.82
51 52 4.997565 AGGATCAACGTAAAATGCATTGG 58.002 39.130 13.82 5.65 0.00 3.16
52 53 4.462483 AGGATCAACGTAAAATGCATTGGT 59.538 37.500 13.82 6.91 0.00 3.67
53 54 5.047377 AGGATCAACGTAAAATGCATTGGTT 60.047 36.000 13.82 11.87 0.00 3.67
54 55 5.637387 GGATCAACGTAAAATGCATTGGTTT 59.363 36.000 13.82 6.39 0.00 3.27
55 56 5.896922 TCAACGTAAAATGCATTGGTTTG 57.103 34.783 13.82 11.88 0.00 2.93
56 57 4.210120 TCAACGTAAAATGCATTGGTTTGC 59.790 37.500 13.82 6.53 43.07 3.68
57 58 2.728839 ACGTAAAATGCATTGGTTTGCG 59.271 40.909 22.77 22.77 45.77 4.85
58 59 2.728839 CGTAAAATGCATTGGTTTGCGT 59.271 40.909 13.82 0.00 45.77 5.24
59 60 3.421569 CGTAAAATGCATTGGTTTGCGTG 60.422 43.478 13.82 0.00 45.77 5.34
60 61 1.510776 AAATGCATTGGTTTGCGTGG 58.489 45.000 13.82 0.00 45.77 4.94
61 62 0.392336 AATGCATTGGTTTGCGTGGT 59.608 45.000 12.09 0.00 45.77 4.16
62 63 0.319727 ATGCATTGGTTTGCGTGGTG 60.320 50.000 0.00 0.00 45.77 4.17
63 64 1.664333 GCATTGGTTTGCGTGGTGG 60.664 57.895 0.00 0.00 32.06 4.61
64 65 2.037053 CATTGGTTTGCGTGGTGGA 58.963 52.632 0.00 0.00 0.00 4.02
65 66 0.387202 CATTGGTTTGCGTGGTGGAA 59.613 50.000 0.00 0.00 0.00 3.53
66 67 0.673437 ATTGGTTTGCGTGGTGGAAG 59.327 50.000 0.00 0.00 0.00 3.46
67 68 0.394488 TTGGTTTGCGTGGTGGAAGA 60.394 50.000 0.00 0.00 0.00 2.87
68 69 0.179004 TGGTTTGCGTGGTGGAAGAT 60.179 50.000 0.00 0.00 0.00 2.40
69 70 0.240945 GGTTTGCGTGGTGGAAGATG 59.759 55.000 0.00 0.00 0.00 2.90
70 71 0.951558 GTTTGCGTGGTGGAAGATGT 59.048 50.000 0.00 0.00 0.00 3.06
71 72 0.950836 TTTGCGTGGTGGAAGATGTG 59.049 50.000 0.00 0.00 0.00 3.21
72 73 0.179032 TTGCGTGGTGGAAGATGTGT 60.179 50.000 0.00 0.00 0.00 3.72
73 74 0.884259 TGCGTGGTGGAAGATGTGTG 60.884 55.000 0.00 0.00 0.00 3.82
74 75 0.884704 GCGTGGTGGAAGATGTGTGT 60.885 55.000 0.00 0.00 0.00 3.72
75 76 1.148310 CGTGGTGGAAGATGTGTGTC 58.852 55.000 0.00 0.00 0.00 3.67
76 77 1.523758 GTGGTGGAAGATGTGTGTCC 58.476 55.000 0.00 0.00 0.00 4.02
77 78 0.400213 TGGTGGAAGATGTGTGTCCC 59.600 55.000 0.00 0.00 0.00 4.46
78 79 0.400213 GGTGGAAGATGTGTGTCCCA 59.600 55.000 0.00 0.00 0.00 4.37
79 80 1.202879 GGTGGAAGATGTGTGTCCCAA 60.203 52.381 0.00 0.00 0.00 4.12
80 81 2.582052 GTGGAAGATGTGTGTCCCAAA 58.418 47.619 0.00 0.00 0.00 3.28
81 82 2.554032 GTGGAAGATGTGTGTCCCAAAG 59.446 50.000 0.00 0.00 0.00 2.77
82 83 2.441375 TGGAAGATGTGTGTCCCAAAGA 59.559 45.455 0.00 0.00 0.00 2.52
83 84 3.117701 TGGAAGATGTGTGTCCCAAAGAA 60.118 43.478 0.00 0.00 0.00 2.52
84 85 3.503748 GGAAGATGTGTGTCCCAAAGAAG 59.496 47.826 0.00 0.00 0.00 2.85
85 86 3.864789 AGATGTGTGTCCCAAAGAAGT 57.135 42.857 0.00 0.00 0.00 3.01
86 87 3.480470 AGATGTGTGTCCCAAAGAAGTG 58.520 45.455 0.00 0.00 0.00 3.16
87 88 2.051334 TGTGTGTCCCAAAGAAGTGG 57.949 50.000 0.00 0.00 38.51 4.00
96 97 3.004752 CCAAAGAAGTGGGGAGGTATG 57.995 52.381 0.00 0.00 34.77 2.39
97 98 2.357154 CCAAAGAAGTGGGGAGGTATGG 60.357 54.545 0.00 0.00 34.77 2.74
98 99 1.596496 AAGAAGTGGGGAGGTATGGG 58.404 55.000 0.00 0.00 0.00 4.00
99 100 0.421904 AGAAGTGGGGAGGTATGGGT 59.578 55.000 0.00 0.00 0.00 4.51
100 101 1.203570 AGAAGTGGGGAGGTATGGGTT 60.204 52.381 0.00 0.00 0.00 4.11
101 102 1.639108 GAAGTGGGGAGGTATGGGTTT 59.361 52.381 0.00 0.00 0.00 3.27
102 103 1.768265 AGTGGGGAGGTATGGGTTTT 58.232 50.000 0.00 0.00 0.00 2.43
103 104 1.639108 AGTGGGGAGGTATGGGTTTTC 59.361 52.381 0.00 0.00 0.00 2.29
104 105 0.621609 TGGGGAGGTATGGGTTTTCG 59.378 55.000 0.00 0.00 0.00 3.46
105 106 0.913924 GGGGAGGTATGGGTTTTCGA 59.086 55.000 0.00 0.00 0.00 3.71
106 107 1.134189 GGGGAGGTATGGGTTTTCGAG 60.134 57.143 0.00 0.00 0.00 4.04
107 108 1.835531 GGGAGGTATGGGTTTTCGAGA 59.164 52.381 0.00 0.00 0.00 4.04
108 109 2.438392 GGGAGGTATGGGTTTTCGAGAT 59.562 50.000 0.00 0.00 0.00 2.75
109 110 3.644738 GGGAGGTATGGGTTTTCGAGATA 59.355 47.826 0.00 0.00 0.00 1.98
110 111 4.286291 GGGAGGTATGGGTTTTCGAGATAT 59.714 45.833 0.00 0.00 0.00 1.63
111 112 5.480205 GGAGGTATGGGTTTTCGAGATATC 58.520 45.833 0.00 0.00 0.00 1.63
112 113 5.480205 GAGGTATGGGTTTTCGAGATATCC 58.520 45.833 0.00 0.00 0.00 2.59
113 114 4.905456 AGGTATGGGTTTTCGAGATATCCA 59.095 41.667 0.00 0.00 0.00 3.41
114 115 5.548056 AGGTATGGGTTTTCGAGATATCCAT 59.452 40.000 11.51 11.51 37.33 3.41
115 116 6.729100 AGGTATGGGTTTTCGAGATATCCATA 59.271 38.462 9.97 9.97 35.46 2.74
116 117 7.042335 GGTATGGGTTTTCGAGATATCCATAG 58.958 42.308 12.93 0.00 36.72 2.23
117 118 6.688073 ATGGGTTTTCGAGATATCCATAGT 57.312 37.500 6.52 0.00 32.45 2.12
118 119 6.494666 TGGGTTTTCGAGATATCCATAGTT 57.505 37.500 0.00 0.00 0.00 2.24
119 120 6.895782 TGGGTTTTCGAGATATCCATAGTTT 58.104 36.000 0.00 0.00 0.00 2.66
120 121 7.343357 TGGGTTTTCGAGATATCCATAGTTTT 58.657 34.615 0.00 0.00 0.00 2.43
121 122 8.487848 TGGGTTTTCGAGATATCCATAGTTTTA 58.512 33.333 0.00 0.00 0.00 1.52
122 123 8.989980 GGGTTTTCGAGATATCCATAGTTTTAG 58.010 37.037 0.00 0.00 0.00 1.85
123 124 9.543783 GGTTTTCGAGATATCCATAGTTTTAGT 57.456 33.333 0.00 0.00 0.00 2.24
127 128 9.542462 TTCGAGATATCCATAGTTTTAGTTTGG 57.458 33.333 0.00 0.00 0.00 3.28
128 129 7.656137 TCGAGATATCCATAGTTTTAGTTTGGC 59.344 37.037 0.00 0.00 0.00 4.52
129 130 7.095187 CGAGATATCCATAGTTTTAGTTTGGCC 60.095 40.741 0.00 0.00 0.00 5.36
130 131 7.582719 AGATATCCATAGTTTTAGTTTGGCCA 58.417 34.615 0.00 0.00 0.00 5.36
131 132 8.227507 AGATATCCATAGTTTTAGTTTGGCCAT 58.772 33.333 6.09 0.00 0.00 4.40
132 133 5.913137 TCCATAGTTTTAGTTTGGCCATG 57.087 39.130 6.09 0.00 0.00 3.66
133 134 4.159506 TCCATAGTTTTAGTTTGGCCATGC 59.840 41.667 6.09 1.87 0.00 4.06
134 135 4.160252 CCATAGTTTTAGTTTGGCCATGCT 59.840 41.667 6.09 10.75 0.00 3.79
135 136 5.359576 CCATAGTTTTAGTTTGGCCATGCTA 59.640 40.000 6.09 9.61 0.00 3.49
136 137 6.460123 CCATAGTTTTAGTTTGGCCATGCTAG 60.460 42.308 6.09 0.00 0.00 3.42
137 138 3.193479 AGTTTTAGTTTGGCCATGCTAGC 59.807 43.478 6.09 8.10 0.00 3.42
145 146 2.571548 GCCATGCTAGCCAAACAGT 58.428 52.632 13.29 0.00 0.00 3.55
146 147 0.171903 GCCATGCTAGCCAAACAGTG 59.828 55.000 13.29 0.00 0.00 3.66
147 148 1.538047 CCATGCTAGCCAAACAGTGT 58.462 50.000 13.29 0.00 0.00 3.55
148 149 1.888512 CCATGCTAGCCAAACAGTGTT 59.111 47.619 13.29 1.64 0.00 3.32
149 150 2.352030 CCATGCTAGCCAAACAGTGTTG 60.352 50.000 13.29 4.00 0.00 3.33
154 155 2.027460 CCAAACAGTGTTGGCGCC 59.973 61.111 22.73 22.73 41.63 6.53
155 156 2.489275 CCAAACAGTGTTGGCGCCT 61.489 57.895 29.70 2.88 41.63 5.52
156 157 1.299316 CAAACAGTGTTGGCGCCTG 60.299 57.895 29.70 19.61 0.00 4.85
157 158 1.453015 AAACAGTGTTGGCGCCTGA 60.453 52.632 29.70 13.94 0.00 3.86
158 159 0.823356 AAACAGTGTTGGCGCCTGAT 60.823 50.000 29.70 8.95 0.00 2.90
159 160 0.823356 AACAGTGTTGGCGCCTGATT 60.823 50.000 29.70 10.73 0.00 2.57
160 161 1.210931 CAGTGTTGGCGCCTGATTG 59.789 57.895 29.70 15.32 0.00 2.67
161 162 1.073025 AGTGTTGGCGCCTGATTGA 59.927 52.632 29.70 1.94 0.00 2.57
162 163 0.957395 AGTGTTGGCGCCTGATTGAG 60.957 55.000 29.70 0.00 0.00 3.02
163 164 0.955428 GTGTTGGCGCCTGATTGAGA 60.955 55.000 29.70 0.07 0.00 3.27
164 165 0.250684 TGTTGGCGCCTGATTGAGAA 60.251 50.000 29.70 7.86 0.00 2.87
165 166 0.169009 GTTGGCGCCTGATTGAGAAC 59.831 55.000 29.70 16.86 0.00 3.01
166 167 0.036732 TTGGCGCCTGATTGAGAACT 59.963 50.000 29.70 0.00 0.00 3.01
167 168 0.901827 TGGCGCCTGATTGAGAACTA 59.098 50.000 29.70 0.00 0.00 2.24
168 169 1.486310 TGGCGCCTGATTGAGAACTAT 59.514 47.619 29.70 0.00 0.00 2.12
169 170 1.869767 GGCGCCTGATTGAGAACTATG 59.130 52.381 22.15 0.00 0.00 2.23
170 171 2.483714 GGCGCCTGATTGAGAACTATGA 60.484 50.000 22.15 0.00 0.00 2.15
171 172 2.541762 GCGCCTGATTGAGAACTATGAC 59.458 50.000 0.00 0.00 0.00 3.06
172 173 3.739519 GCGCCTGATTGAGAACTATGACT 60.740 47.826 0.00 0.00 0.00 3.41
173 174 4.047822 CGCCTGATTGAGAACTATGACTC 58.952 47.826 0.00 0.00 0.00 3.36
174 175 4.376146 GCCTGATTGAGAACTATGACTCC 58.624 47.826 0.00 0.00 32.84 3.85
175 176 4.100808 GCCTGATTGAGAACTATGACTCCT 59.899 45.833 0.00 0.00 32.84 3.69
176 177 5.396213 GCCTGATTGAGAACTATGACTCCTT 60.396 44.000 0.00 0.00 32.84 3.36
177 178 6.047870 CCTGATTGAGAACTATGACTCCTTG 58.952 44.000 0.00 0.00 32.84 3.61
178 179 6.351711 CCTGATTGAGAACTATGACTCCTTGT 60.352 42.308 0.00 0.00 32.84 3.16
179 180 6.401394 TGATTGAGAACTATGACTCCTTGTG 58.599 40.000 0.00 0.00 32.84 3.33
180 181 5.808366 TTGAGAACTATGACTCCTTGTGT 57.192 39.130 0.00 0.00 32.84 3.72
181 182 5.139435 TGAGAACTATGACTCCTTGTGTG 57.861 43.478 0.00 0.00 32.84 3.82
182 183 3.929610 GAGAACTATGACTCCTTGTGTGC 59.070 47.826 0.00 0.00 0.00 4.57
183 184 3.324846 AGAACTATGACTCCTTGTGTGCA 59.675 43.478 0.00 0.00 0.00 4.57
184 185 3.769739 ACTATGACTCCTTGTGTGCAA 57.230 42.857 0.00 0.00 0.00 4.08
185 186 4.085357 ACTATGACTCCTTGTGTGCAAA 57.915 40.909 0.00 0.00 33.73 3.68
186 187 4.067896 ACTATGACTCCTTGTGTGCAAAG 58.932 43.478 0.00 0.00 33.73 2.77
187 188 1.679139 TGACTCCTTGTGTGCAAAGG 58.321 50.000 9.08 9.08 33.73 3.11
188 189 1.064758 TGACTCCTTGTGTGCAAAGGT 60.065 47.619 14.00 0.00 33.73 3.50
189 190 2.024414 GACTCCTTGTGTGCAAAGGTT 58.976 47.619 14.00 4.41 33.73 3.50
190 191 2.024414 ACTCCTTGTGTGCAAAGGTTC 58.976 47.619 14.00 0.00 33.73 3.62
191 192 2.301346 CTCCTTGTGTGCAAAGGTTCT 58.699 47.619 14.00 0.00 33.73 3.01
192 193 3.118038 ACTCCTTGTGTGCAAAGGTTCTA 60.118 43.478 14.00 0.00 33.73 2.10
193 194 3.882888 CTCCTTGTGTGCAAAGGTTCTAA 59.117 43.478 14.00 0.00 33.73 2.10
194 195 3.882888 TCCTTGTGTGCAAAGGTTCTAAG 59.117 43.478 14.00 0.19 33.73 2.18
195 196 3.882888 CCTTGTGTGCAAAGGTTCTAAGA 59.117 43.478 7.40 0.00 33.73 2.10
196 197 4.023707 CCTTGTGTGCAAAGGTTCTAAGAG 60.024 45.833 7.40 0.00 33.73 2.85
197 198 2.878406 TGTGTGCAAAGGTTCTAAGAGC 59.122 45.455 0.00 0.00 0.00 4.09
198 199 3.142174 GTGTGCAAAGGTTCTAAGAGCT 58.858 45.455 0.00 0.00 0.00 4.09
199 200 4.202315 TGTGTGCAAAGGTTCTAAGAGCTA 60.202 41.667 0.00 0.00 0.00 3.32
200 201 4.755123 GTGTGCAAAGGTTCTAAGAGCTAA 59.245 41.667 0.00 0.00 0.00 3.09
201 202 4.997395 TGTGCAAAGGTTCTAAGAGCTAAG 59.003 41.667 0.00 0.00 0.00 2.18
202 203 4.998033 GTGCAAAGGTTCTAAGAGCTAAGT 59.002 41.667 0.00 0.00 0.00 2.24
203 204 6.164176 GTGCAAAGGTTCTAAGAGCTAAGTA 58.836 40.000 0.00 0.00 0.00 2.24
204 205 6.819146 GTGCAAAGGTTCTAAGAGCTAAGTAT 59.181 38.462 0.00 0.00 0.00 2.12
205 206 7.334671 GTGCAAAGGTTCTAAGAGCTAAGTATT 59.665 37.037 0.00 0.00 0.00 1.89
206 207 8.537016 TGCAAAGGTTCTAAGAGCTAAGTATTA 58.463 33.333 0.00 0.00 0.00 0.98
207 208 8.819015 GCAAAGGTTCTAAGAGCTAAGTATTAC 58.181 37.037 0.00 0.00 0.00 1.89
210 211 9.703677 AAGGTTCTAAGAGCTAAGTATTACTCT 57.296 33.333 0.00 0.00 39.22 3.24
211 212 9.703677 AGGTTCTAAGAGCTAAGTATTACTCTT 57.296 33.333 8.92 8.92 44.00 2.85
212 213 9.955208 GGTTCTAAGAGCTAAGTATTACTCTTC 57.045 37.037 7.34 0.00 42.46 2.87
223 224 7.617041 AAGTATTACTCTTCTGGTGATTTGC 57.383 36.000 0.00 0.00 0.00 3.68
225 226 8.079211 AGTATTACTCTTCTGGTGATTTGCTA 57.921 34.615 0.00 0.00 0.00 3.49
226 227 8.540388 AGTATTACTCTTCTGGTGATTTGCTAA 58.460 33.333 0.00 0.00 0.00 3.09
228 229 8.814038 ATTACTCTTCTGGTGATTTGCTAAAT 57.186 30.769 0.00 0.00 0.00 1.40
232 233 7.665559 ACTCTTCTGGTGATTTGCTAAATTGTA 59.334 33.333 0.00 0.00 0.00 2.41
233 234 7.816640 TCTTCTGGTGATTTGCTAAATTGTAC 58.183 34.615 0.00 0.00 0.00 2.90
237 238 7.230510 TCTGGTGATTTGCTAAATTGTACACTT 59.769 33.333 0.00 0.00 0.00 3.16
240 241 9.685828 GGTGATTTGCTAAATTGTACACTTAAA 57.314 29.630 0.00 0.00 0.00 1.52
247 248 9.084533 TGCTAAATTGTACACTTAAAAAGGGAT 57.915 29.630 0.00 0.00 35.35 3.85
262 263 7.738437 AAAAAGGGATCATCATATGTTTGGT 57.262 32.000 1.90 0.00 0.00 3.67
270 271 9.593134 GGATCATCATATGTTTGGTAGAGTATC 57.407 37.037 1.90 0.65 0.00 2.24
300 301 5.246883 AGGAATCCAAACATTCAAGAAAGGG 59.753 40.000 0.61 0.00 34.84 3.95
306 307 5.279406 CCAAACATTCAAGAAAGGGTGCATA 60.279 40.000 0.00 0.00 0.00 3.14
308 309 5.587388 ACATTCAAGAAAGGGTGCATATG 57.413 39.130 0.00 0.00 0.00 1.78
318 319 0.258774 GGTGCATATGGAGGGTTGGT 59.741 55.000 4.56 0.00 0.00 3.67
324 325 3.436470 GCATATGGAGGGTTGGTAATGGT 60.436 47.826 4.56 0.00 0.00 3.55
333 334 6.040504 GGAGGGTTGGTAATGGTATGAAAATC 59.959 42.308 0.00 0.00 0.00 2.17
336 337 7.039270 GGGTTGGTAATGGTATGAAAATCAAC 58.961 38.462 0.00 0.00 0.00 3.18
345 346 7.822161 TGGTATGAAAATCAACATATGGGAG 57.178 36.000 7.80 0.00 32.77 4.30
348 349 6.966534 ATGAAAATCAACATATGGGAGGAC 57.033 37.500 7.80 0.00 0.00 3.85
357 358 4.566837 ACATATGGGAGGACTGTTGGATA 58.433 43.478 7.80 0.00 0.00 2.59
360 361 0.837940 GGGAGGACTGTTGGATACCC 59.162 60.000 0.00 0.00 0.00 3.69
373 374 5.461032 TTGGATACCCAACAACAATTCAC 57.539 39.130 0.00 0.00 46.94 3.18
384 385 6.747280 CCAACAACAATTCACGGAAGATAATC 59.253 38.462 0.00 0.00 0.00 1.75
390 391 6.655003 ACAATTCACGGAAGATAATCACTGTT 59.345 34.615 0.00 0.00 0.00 3.16
396 397 4.101119 CGGAAGATAATCACTGTTAGGGGT 59.899 45.833 0.00 0.00 0.00 4.95
401 402 7.125792 AGATAATCACTGTTAGGGGTAACTG 57.874 40.000 0.00 0.00 35.75 3.16
408 409 2.440253 TGTTAGGGGTAACTGTGTGCTT 59.560 45.455 0.00 0.00 0.00 3.91
413 414 2.551032 GGGGTAACTGTGTGCTTACAAC 59.449 50.000 0.00 0.00 0.00 3.32
414 415 3.207778 GGGTAACTGTGTGCTTACAACA 58.792 45.455 0.00 0.00 0.00 3.33
417 418 5.051816 GGTAACTGTGTGCTTACAACAGTA 58.948 41.667 8.00 0.00 40.29 2.74
426 427 7.148154 TGTGTGCTTACAACAGTAAATGAACTT 60.148 33.333 0.00 0.00 0.00 2.66
429 430 9.543018 GTGCTTACAACAGTAAATGAACTTATC 57.457 33.333 0.00 0.00 0.00 1.75
436 437 7.687941 ACAGTAAATGAACTTATCAACCCAG 57.312 36.000 0.00 0.00 42.54 4.45
437 438 6.151144 ACAGTAAATGAACTTATCAACCCAGC 59.849 38.462 0.00 0.00 42.54 4.85
439 440 4.322057 AATGAACTTATCAACCCAGCCT 57.678 40.909 0.00 0.00 42.54 4.58
442 443 3.274288 GAACTTATCAACCCAGCCTCTG 58.726 50.000 0.00 0.00 0.00 3.35
453 454 0.549950 CAGCCTCTGGTGAATGGGAT 59.450 55.000 0.00 0.00 42.66 3.85
456 457 1.064463 GCCTCTGGTGAATGGGATGAA 60.064 52.381 0.00 0.00 0.00 2.57
459 460 3.054139 CCTCTGGTGAATGGGATGAAGAA 60.054 47.826 0.00 0.00 0.00 2.52
462 463 3.944015 CTGGTGAATGGGATGAAGAACTC 59.056 47.826 0.00 0.00 0.00 3.01
482 483 4.216257 ACTCATCCGTGACAATTTTTGGAG 59.784 41.667 0.00 0.00 34.12 3.86
483 484 4.393834 TCATCCGTGACAATTTTTGGAGA 58.606 39.130 0.00 0.00 34.12 3.71
488 489 6.234920 TCCGTGACAATTTTTGGAGAATAGA 58.765 36.000 0.00 0.00 34.12 1.98
489 490 6.884295 TCCGTGACAATTTTTGGAGAATAGAT 59.116 34.615 0.00 0.00 34.12 1.98
495 496 8.125978 ACAATTTTTGGAGAATAGATGCAGAA 57.874 30.769 0.00 0.00 34.12 3.02
501 502 5.862845 TGGAGAATAGATGCAGAAAGGATC 58.137 41.667 0.00 0.00 44.67 3.36
504 505 6.212388 GGAGAATAGATGCAGAAAGGATCCTA 59.788 42.308 16.55 0.00 45.38 2.94
505 506 7.092935 GGAGAATAGATGCAGAAAGGATCCTAT 60.093 40.741 16.55 2.97 45.38 2.57
506 507 8.907829 AGAATAGATGCAGAAAGGATCCTATA 57.092 34.615 16.55 0.00 45.38 1.31
519 520 9.945904 GAAAGGATCCTATAAATACCGATCTTT 57.054 33.333 16.55 0.00 32.54 2.52
525 526 7.378966 TCCTATAAATACCGATCTTTCAGCAG 58.621 38.462 0.00 0.00 0.00 4.24
537 538 0.984230 TTCAGCAGGAAACGGAGGAT 59.016 50.000 0.00 0.00 30.98 3.24
558 559 2.177394 TCGTTGCTTGGCATCTTACA 57.823 45.000 0.00 0.00 38.76 2.41
561 562 3.316588 TCGTTGCTTGGCATCTTACAAAA 59.683 39.130 0.00 0.00 38.76 2.44
564 565 5.473039 GTTGCTTGGCATCTTACAAAATCT 58.527 37.500 0.00 0.00 38.76 2.40
570 571 7.531857 TTGGCATCTTACAAAATCTGGTAAA 57.468 32.000 0.00 0.00 0.00 2.01
591 593 5.948992 AATTTTCTGTCTGGTCAGCTTAC 57.051 39.130 0.00 0.00 35.63 2.34
594 596 4.785511 TTCTGTCTGGTCAGCTTACTAC 57.214 45.455 0.00 0.00 35.63 2.73
595 597 2.747989 TCTGTCTGGTCAGCTTACTACG 59.252 50.000 0.00 0.00 35.63 3.51
596 598 1.816835 TGTCTGGTCAGCTTACTACGG 59.183 52.381 0.00 0.00 0.00 4.02
609 611 1.338136 ACTACGGGCAATGGGAGGAG 61.338 60.000 0.00 0.00 0.00 3.69
613 615 0.474184 CGGGCAATGGGAGGAGTATT 59.526 55.000 0.00 0.00 0.00 1.89
618 620 4.202567 GGGCAATGGGAGGAGTATTATGAA 60.203 45.833 0.00 0.00 0.00 2.57
625 627 6.830912 TGGGAGGAGTATTATGAATCAAGTG 58.169 40.000 0.00 0.00 0.00 3.16
628 630 8.160106 GGGAGGAGTATTATGAATCAAGTGATT 58.840 37.037 6.24 6.24 46.54 2.57
669 671 2.027192 TGGTTCTAAGGCACATCCAGTC 60.027 50.000 0.00 0.00 37.29 3.51
738 740 4.678509 TCTTTGGCGATGTTTACATGAC 57.321 40.909 0.00 0.00 36.57 3.06
739 741 3.124466 TCTTTGGCGATGTTTACATGACG 59.876 43.478 0.00 0.23 36.57 4.35
741 743 1.006832 GGCGATGTTTACATGACGCT 58.993 50.000 20.80 0.00 44.13 5.07
742 744 2.198406 GGCGATGTTTACATGACGCTA 58.802 47.619 20.80 0.00 44.13 4.26
744 746 3.247648 GGCGATGTTTACATGACGCTATT 59.752 43.478 20.80 0.00 44.13 1.73
747 749 4.375005 CGATGTTTACATGACGCTATTCCG 60.375 45.833 0.00 0.00 36.57 4.30
750 752 3.513680 TTACATGACGCTATTCCGTGT 57.486 42.857 0.00 0.00 42.24 4.49
753 755 1.006832 ATGACGCTATTCCGTGTTGC 58.993 50.000 0.00 0.00 42.24 4.17
756 758 1.060937 CGCTATTCCGTGTTGCTGC 59.939 57.895 0.00 0.00 0.00 5.25
757 759 1.060937 GCTATTCCGTGTTGCTGCG 59.939 57.895 0.00 0.00 0.00 5.18
759 761 0.370273 CTATTCCGTGTTGCTGCGTC 59.630 55.000 0.00 0.00 0.00 5.19
774 776 2.766313 TGCGTCTTAGCAAACAGACAT 58.234 42.857 0.00 0.00 45.06 3.06
780 782 6.128795 GCGTCTTAGCAAACAGACATATATCC 60.129 42.308 0.00 0.00 39.64 2.59
786 788 3.963428 AACAGACATATATCCCGCTCC 57.037 47.619 0.00 0.00 0.00 4.70
787 789 3.176924 ACAGACATATATCCCGCTCCT 57.823 47.619 0.00 0.00 0.00 3.69
788 790 3.511477 ACAGACATATATCCCGCTCCTT 58.489 45.455 0.00 0.00 0.00 3.36
789 791 3.259374 ACAGACATATATCCCGCTCCTTG 59.741 47.826 0.00 0.00 0.00 3.61
795 797 0.819259 TATCCCGCTCCTTGCAATGC 60.819 55.000 0.00 0.00 43.06 3.56
797 799 3.830192 CCGCTCCTTGCAATGCCC 61.830 66.667 1.53 0.00 43.06 5.36
804 806 0.247185 CCTTGCAATGCCCGATTTGT 59.753 50.000 1.53 0.00 0.00 2.83
806 808 2.094286 CCTTGCAATGCCCGATTTGTTA 60.094 45.455 1.53 0.00 0.00 2.41
809 811 2.297315 TGCAATGCCCGATTTGTTACAA 59.703 40.909 1.53 0.00 0.00 2.41
810 812 3.243873 TGCAATGCCCGATTTGTTACAAA 60.244 39.130 13.12 13.12 0.00 2.83
811 813 3.932089 GCAATGCCCGATTTGTTACAAAT 59.068 39.130 21.44 21.44 0.00 2.32
816 818 4.158579 TGCCCGATTTGTTACAAATATGCA 59.841 37.500 24.29 24.29 0.00 3.96
828 830 8.374743 TGTTACAAATATGCAGAGGATATAGCA 58.625 33.333 0.00 0.00 41.73 3.49
836 838 4.125703 GCAGAGGATATAGCACATATGGC 58.874 47.826 7.80 7.80 0.00 4.40
837 839 4.366586 CAGAGGATATAGCACATATGGCG 58.633 47.826 7.80 0.00 36.08 5.69
840 842 5.046304 AGAGGATATAGCACATATGGCGTTT 60.046 40.000 7.80 1.81 36.08 3.60
849 851 7.038154 AGCACATATGGCGTTTAAATGTAAT 57.962 32.000 7.80 5.91 36.08 1.89
861 863 6.478588 GTTTAAATGTAATCGAGCACAGGAG 58.521 40.000 7.78 0.00 0.00 3.69
873 875 1.238938 ACAGGAGGTGTGGAAGGGA 59.761 57.895 0.00 0.00 38.28 4.20
876 878 0.838122 AGGAGGTGTGGAAGGGACTG 60.838 60.000 0.00 0.00 40.86 3.51
879 881 2.154074 GGTGTGGAAGGGACTGGGT 61.154 63.158 0.00 0.00 40.86 4.51
880 882 1.375326 GTGTGGAAGGGACTGGGTC 59.625 63.158 0.00 0.00 40.86 4.46
885 887 1.132657 TGGAAGGGACTGGGTCTACAA 60.133 52.381 0.00 0.00 40.86 2.41
886 888 1.278413 GGAAGGGACTGGGTCTACAAC 59.722 57.143 0.00 0.00 40.86 3.32
891 893 3.081804 GGGACTGGGTCTACAACAAATG 58.918 50.000 0.00 0.00 32.47 2.32
894 896 5.338871 GGGACTGGGTCTACAACAAATGATA 60.339 44.000 0.00 0.00 32.47 2.15
895 897 6.177610 GGACTGGGTCTACAACAAATGATAA 58.822 40.000 0.00 0.00 32.47 1.75
896 898 6.657541 GGACTGGGTCTACAACAAATGATAAA 59.342 38.462 0.00 0.00 32.47 1.40
919 921 1.544691 CAGTAGCTGTACCTGGTCGTT 59.455 52.381 0.63 0.00 0.00 3.85
921 923 1.817447 GTAGCTGTACCTGGTCGTTCT 59.183 52.381 0.63 0.00 0.00 3.01
926 928 0.108756 GTACCTGGTCGTTCTGGAGC 60.109 60.000 0.63 0.00 35.07 4.70
939 941 1.829849 TCTGGAGCAGAAGTCATGGAG 59.170 52.381 0.00 0.00 37.57 3.86
943 945 2.224257 GGAGCAGAAGTCATGGAGATCC 60.224 54.545 0.00 0.00 0.00 3.36
948 950 4.695396 CAGAAGTCATGGAGATCCTTCTG 58.305 47.826 16.24 16.24 44.29 3.02
955 957 2.608623 TGGAGATCCTTCTGTGTGACA 58.391 47.619 0.00 0.00 36.82 3.58
960 962 4.892433 AGATCCTTCTGTGTGACAAAGAG 58.108 43.478 5.50 1.03 28.64 2.85
964 966 3.058432 CCTTCTGTGTGACAAAGAGCATG 60.058 47.826 5.50 0.00 28.64 4.06
966 968 4.011966 TCTGTGTGACAAAGAGCATGAT 57.988 40.909 0.25 0.00 0.00 2.45
975 977 6.909357 GTGACAAAGAGCATGATAAGCAATAC 59.091 38.462 0.00 0.00 0.00 1.89
979 981 6.570672 AAGAGCATGATAAGCAATACATGG 57.429 37.500 0.00 0.00 39.96 3.66
980 982 5.872963 AGAGCATGATAAGCAATACATGGA 58.127 37.500 0.00 0.00 39.96 3.41
981 983 6.482524 AGAGCATGATAAGCAATACATGGAT 58.517 36.000 0.00 0.00 39.96 3.41
983 985 7.769507 AGAGCATGATAAGCAATACATGGATAG 59.230 37.037 0.00 0.00 39.96 2.08
986 988 7.470079 CATGATAAGCAATACATGGATAGTGC 58.530 38.462 6.49 6.49 44.49 4.40
991 993 4.330250 GCAATACATGGATAGTGCTGGAT 58.670 43.478 7.26 0.00 41.70 3.41
994 996 6.600822 GCAATACATGGATAGTGCTGGATTAT 59.399 38.462 7.26 0.00 41.70 1.28
996 998 4.825422 ACATGGATAGTGCTGGATTATCG 58.175 43.478 0.00 0.00 0.00 2.92
997 999 4.528206 ACATGGATAGTGCTGGATTATCGA 59.472 41.667 0.00 2.94 0.00 3.59
999 1001 5.545063 TGGATAGTGCTGGATTATCGAAA 57.455 39.130 5.79 0.00 0.00 3.46
1000 1002 5.924356 TGGATAGTGCTGGATTATCGAAAA 58.076 37.500 5.79 0.00 0.00 2.29
1008 1010 3.625853 TGGATTATCGAAAATGGTGGCA 58.374 40.909 0.00 0.00 0.00 4.92
1011 1013 4.097892 GGATTATCGAAAATGGTGGCAGTT 59.902 41.667 0.00 0.00 0.00 3.16
1014 1016 2.852449 TCGAAAATGGTGGCAGTTACA 58.148 42.857 0.00 0.00 0.00 2.41
1022 1024 1.318576 GTGGCAGTTACAAGCTGGTT 58.681 50.000 0.00 0.00 34.73 3.67
1024 1026 2.100749 GTGGCAGTTACAAGCTGGTTTT 59.899 45.455 0.00 0.00 34.73 2.43
1026 1028 3.123050 GGCAGTTACAAGCTGGTTTTTG 58.877 45.455 0.00 0.00 34.73 2.44
1036 1038 1.110442 CTGGTTTTTGTGGTGGCAGA 58.890 50.000 0.00 0.00 0.00 4.26
1038 1040 0.389025 GGTTTTTGTGGTGGCAGAGG 59.611 55.000 0.00 0.00 0.00 3.69
1045 1047 0.326264 GTGGTGGCAGAGGAGACAAT 59.674 55.000 0.00 0.00 0.00 2.71
1047 1049 1.271543 TGGTGGCAGAGGAGACAATTG 60.272 52.381 3.24 3.24 0.00 2.32
1050 1052 1.271543 TGGCAGAGGAGACAATTGGTG 60.272 52.381 10.83 0.00 0.00 4.17
1051 1053 0.807496 GCAGAGGAGACAATTGGTGC 59.193 55.000 10.83 1.85 0.00 5.01
1052 1054 1.081892 CAGAGGAGACAATTGGTGCG 58.918 55.000 10.83 0.00 0.00 5.34
1053 1055 0.687354 AGAGGAGACAATTGGTGCGT 59.313 50.000 10.83 0.00 0.00 5.24
1054 1056 0.798776 GAGGAGACAATTGGTGCGTG 59.201 55.000 10.83 0.00 0.00 5.34
1056 1058 0.798776 GGAGACAATTGGTGCGTGAG 59.201 55.000 10.83 0.00 0.00 3.51
1062 1064 1.879380 CAATTGGTGCGTGAGGAAGAA 59.121 47.619 0.00 0.00 0.00 2.52
1075 1077 2.358322 GGAAGAAGTCCAACCACCAA 57.642 50.000 0.00 0.00 46.97 3.67
1076 1078 1.954382 GGAAGAAGTCCAACCACCAAC 59.046 52.381 0.00 0.00 46.97 3.77
1080 1082 2.879813 AAGTCCAACCACCAACGCGT 62.880 55.000 5.58 5.58 0.00 6.01
1086 1088 1.098712 AACCACCAACGCGTTCATGT 61.099 50.000 23.92 16.49 0.00 3.21
1090 1092 0.306533 ACCAACGCGTTCATGTCAAC 59.693 50.000 23.92 0.00 0.00 3.18
1092 1094 0.721155 CAACGCGTTCATGTCAACCG 60.721 55.000 23.92 2.54 0.00 4.44
1101 1103 0.107508 CATGTCAACCGATCAGGGCT 60.108 55.000 8.20 0.00 46.96 5.19
1105 1107 1.227089 CAACCGATCAGGGCTCTCG 60.227 63.158 8.20 0.00 46.96 4.04
1106 1108 3.082579 AACCGATCAGGGCTCTCGC 62.083 63.158 8.20 0.00 46.96 5.03
1119 1121 1.167851 CTCTCGCCCTGAATTTTGCA 58.832 50.000 0.00 0.00 0.00 4.08
1120 1122 0.881118 TCTCGCCCTGAATTTTGCAC 59.119 50.000 0.00 0.00 0.00 4.57
1122 1124 2.088178 CGCCCTGAATTTTGCACGC 61.088 57.895 0.00 0.00 0.00 5.34
1128 1130 4.637489 AATTTTGCACGCGCGGCA 62.637 55.556 32.17 32.17 42.97 5.69
1137 1139 4.914420 CGCGCGGCAAACAAACCA 62.914 61.111 24.84 0.00 0.00 3.67
1138 1140 2.355718 GCGCGGCAAACAAACCAT 60.356 55.556 8.83 0.00 0.00 3.55
1140 1142 1.285641 CGCGGCAAACAAACCATCT 59.714 52.632 0.00 0.00 0.00 2.90
1141 1143 0.519519 CGCGGCAAACAAACCATCTA 59.480 50.000 0.00 0.00 0.00 1.98
1143 1145 1.268352 GCGGCAAACAAACCATCTACA 59.732 47.619 0.00 0.00 0.00 2.74
1147 1149 4.298332 GGCAAACAAACCATCTACAACAG 58.702 43.478 0.00 0.00 0.00 3.16
1149 1151 4.499696 GCAAACAAACCATCTACAACAGCT 60.500 41.667 0.00 0.00 0.00 4.24
1155 1157 6.210784 ACAAACCATCTACAACAGCTAGACTA 59.789 38.462 0.00 0.00 0.00 2.59
1159 1161 7.852263 ACCATCTACAACAGCTAGACTAAATT 58.148 34.615 0.00 0.00 0.00 1.82
1160 1162 7.766278 ACCATCTACAACAGCTAGACTAAATTG 59.234 37.037 0.00 0.00 0.00 2.32
1306 1308 0.248289 GGCAAGGCTGGAGTACGTAA 59.752 55.000 0.00 0.00 0.00 3.18
1393 1396 3.351740 TGCAACTCACTCTTGGTTCAAA 58.648 40.909 0.00 0.00 0.00 2.69
1398 1401 5.304686 ACTCACTCTTGGTTCAAATGGTA 57.695 39.130 0.00 0.00 0.00 3.25
1809 1814 0.676782 CCCGTTGGAGACCATTGTCC 60.677 60.000 0.00 0.00 42.81 4.02
1824 1829 4.779733 TCCCCGGGTCCTCAGAGC 62.780 72.222 21.85 0.00 39.90 4.09
1843 1849 1.349357 GCAGTTCTCTTCCTTCCCTGT 59.651 52.381 0.00 0.00 0.00 4.00
1885 1891 1.229723 TCCCCGGCTAACCTCCTTT 60.230 57.895 0.00 0.00 0.00 3.11
1974 1983 1.078426 GCATCCTGGTTAGCACGGT 60.078 57.895 0.00 0.00 0.00 4.83
2023 2032 2.290367 CGAACACCTGATCAACTTTGCA 59.710 45.455 0.00 0.00 0.00 4.08
2122 2132 3.233507 CGGGGCTACTTACTTGGGTATA 58.766 50.000 0.00 0.00 0.00 1.47
2133 2143 0.831966 TTGGGTATACGGGCGATTGT 59.168 50.000 0.00 0.00 0.00 2.71
2336 2347 4.041691 ACTTGCACTACCATAACCAGACTT 59.958 41.667 0.00 0.00 0.00 3.01
2394 2405 0.906066 TATTGGCACGTCCTTGGCTA 59.094 50.000 0.00 0.00 42.50 3.93
2403 2414 0.910088 GTCCTTGGCTAGACCCCAGT 60.910 60.000 0.00 0.00 37.83 4.00
2406 2417 0.108138 CTTGGCTAGACCCCAGTTCG 60.108 60.000 0.00 0.00 37.83 3.95
2481 2493 1.379044 GCAGCTACCCACTTGGCAT 60.379 57.895 0.00 0.00 37.83 4.40
2483 2495 0.813184 CAGCTACCCACTTGGCATTG 59.187 55.000 0.00 0.00 37.83 2.82
2526 2539 4.776322 CCCGCTGCCACAATCCGA 62.776 66.667 0.00 0.00 0.00 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.026121 TCACCCCACCAAAAATGCAATATA 58.974 37.500 0.00 0.00 0.00 0.86
1 2 3.843027 TCACCCCACCAAAAATGCAATAT 59.157 39.130 0.00 0.00 0.00 1.28
2 3 3.007398 GTCACCCCACCAAAAATGCAATA 59.993 43.478 0.00 0.00 0.00 1.90
3 4 2.053244 TCACCCCACCAAAAATGCAAT 58.947 42.857 0.00 0.00 0.00 3.56
4 5 1.139853 GTCACCCCACCAAAAATGCAA 59.860 47.619 0.00 0.00 0.00 4.08
5 6 0.755686 GTCACCCCACCAAAAATGCA 59.244 50.000 0.00 0.00 0.00 3.96
6 7 0.755686 TGTCACCCCACCAAAAATGC 59.244 50.000 0.00 0.00 0.00 3.56
7 8 2.297033 CTCTGTCACCCCACCAAAAATG 59.703 50.000 0.00 0.00 0.00 2.32
8 9 2.176798 TCTCTGTCACCCCACCAAAAAT 59.823 45.455 0.00 0.00 0.00 1.82
9 10 1.566703 TCTCTGTCACCCCACCAAAAA 59.433 47.619 0.00 0.00 0.00 1.94
10 11 1.142870 CTCTCTGTCACCCCACCAAAA 59.857 52.381 0.00 0.00 0.00 2.44
11 12 0.764890 CTCTCTGTCACCCCACCAAA 59.235 55.000 0.00 0.00 0.00 3.28
12 13 1.127567 CCTCTCTGTCACCCCACCAA 61.128 60.000 0.00 0.00 0.00 3.67
13 14 1.536418 CCTCTCTGTCACCCCACCA 60.536 63.158 0.00 0.00 0.00 4.17
14 15 0.618968 ATCCTCTCTGTCACCCCACC 60.619 60.000 0.00 0.00 0.00 4.61
15 16 0.827368 GATCCTCTCTGTCACCCCAC 59.173 60.000 0.00 0.00 0.00 4.61
16 17 0.413434 TGATCCTCTCTGTCACCCCA 59.587 55.000 0.00 0.00 0.00 4.96
17 18 1.208293 GTTGATCCTCTCTGTCACCCC 59.792 57.143 0.00 0.00 0.00 4.95
18 19 1.134965 CGTTGATCCTCTCTGTCACCC 60.135 57.143 0.00 0.00 0.00 4.61
19 20 1.546476 ACGTTGATCCTCTCTGTCACC 59.454 52.381 0.00 0.00 0.00 4.02
20 21 4.436242 TTACGTTGATCCTCTCTGTCAC 57.564 45.455 0.00 0.00 0.00 3.67
21 22 5.462530 TTTTACGTTGATCCTCTCTGTCA 57.537 39.130 0.00 0.00 0.00 3.58
22 23 5.220491 GCATTTTACGTTGATCCTCTCTGTC 60.220 44.000 0.00 0.00 0.00 3.51
23 24 4.631813 GCATTTTACGTTGATCCTCTCTGT 59.368 41.667 0.00 0.00 0.00 3.41
24 25 4.631377 TGCATTTTACGTTGATCCTCTCTG 59.369 41.667 0.00 0.00 0.00 3.35
25 26 4.832248 TGCATTTTACGTTGATCCTCTCT 58.168 39.130 0.00 0.00 0.00 3.10
26 27 5.741388 ATGCATTTTACGTTGATCCTCTC 57.259 39.130 0.00 0.00 0.00 3.20
27 28 5.163622 CCAATGCATTTTACGTTGATCCTCT 60.164 40.000 9.83 0.00 36.35 3.69
28 29 5.036737 CCAATGCATTTTACGTTGATCCTC 58.963 41.667 9.83 0.00 36.35 3.71
29 30 4.462483 ACCAATGCATTTTACGTTGATCCT 59.538 37.500 9.83 0.00 36.35 3.24
30 31 4.743493 ACCAATGCATTTTACGTTGATCC 58.257 39.130 9.83 0.00 36.35 3.36
31 32 6.524490 CAAACCAATGCATTTTACGTTGATC 58.476 36.000 9.83 0.00 36.35 2.92
32 33 5.107143 GCAAACCAATGCATTTTACGTTGAT 60.107 36.000 9.83 0.00 45.70 2.57
33 34 4.210120 GCAAACCAATGCATTTTACGTTGA 59.790 37.500 9.83 0.00 45.70 3.18
34 35 4.453339 GCAAACCAATGCATTTTACGTTG 58.547 39.130 9.83 10.70 45.70 4.10
35 36 3.183373 CGCAAACCAATGCATTTTACGTT 59.817 39.130 9.83 7.12 46.76 3.99
36 37 2.728839 CGCAAACCAATGCATTTTACGT 59.271 40.909 9.83 0.76 46.76 3.57
37 38 2.728839 ACGCAAACCAATGCATTTTACG 59.271 40.909 9.83 10.93 46.76 3.18
38 39 3.120718 CCACGCAAACCAATGCATTTTAC 60.121 43.478 9.83 0.00 46.76 2.01
39 40 3.062763 CCACGCAAACCAATGCATTTTA 58.937 40.909 9.83 0.00 46.76 1.52
40 41 1.872313 CCACGCAAACCAATGCATTTT 59.128 42.857 9.83 0.00 46.76 1.82
41 42 1.202627 ACCACGCAAACCAATGCATTT 60.203 42.857 9.83 0.00 46.76 2.32
42 43 0.392336 ACCACGCAAACCAATGCATT 59.608 45.000 5.99 5.99 46.76 3.56
43 44 0.319727 CACCACGCAAACCAATGCAT 60.320 50.000 0.00 0.00 46.76 3.96
44 45 1.067084 CACCACGCAAACCAATGCA 59.933 52.632 0.00 0.00 46.76 3.96
45 46 1.664333 CCACCACGCAAACCAATGC 60.664 57.895 0.00 0.00 42.94 3.56
46 47 0.387202 TTCCACCACGCAAACCAATG 59.613 50.000 0.00 0.00 0.00 2.82
47 48 0.673437 CTTCCACCACGCAAACCAAT 59.327 50.000 0.00 0.00 0.00 3.16
48 49 0.394488 TCTTCCACCACGCAAACCAA 60.394 50.000 0.00 0.00 0.00 3.67
49 50 0.179004 ATCTTCCACCACGCAAACCA 60.179 50.000 0.00 0.00 0.00 3.67
50 51 0.240945 CATCTTCCACCACGCAAACC 59.759 55.000 0.00 0.00 0.00 3.27
51 52 0.951558 ACATCTTCCACCACGCAAAC 59.048 50.000 0.00 0.00 0.00 2.93
52 53 0.950836 CACATCTTCCACCACGCAAA 59.049 50.000 0.00 0.00 0.00 3.68
53 54 0.179032 ACACATCTTCCACCACGCAA 60.179 50.000 0.00 0.00 0.00 4.85
54 55 0.884259 CACACATCTTCCACCACGCA 60.884 55.000 0.00 0.00 0.00 5.24
55 56 0.884704 ACACACATCTTCCACCACGC 60.885 55.000 0.00 0.00 0.00 5.34
56 57 1.148310 GACACACATCTTCCACCACG 58.852 55.000 0.00 0.00 0.00 4.94
57 58 1.523758 GGACACACATCTTCCACCAC 58.476 55.000 0.00 0.00 0.00 4.16
58 59 0.400213 GGGACACACATCTTCCACCA 59.600 55.000 0.00 0.00 0.00 4.17
59 60 0.400213 TGGGACACACATCTTCCACC 59.600 55.000 0.00 0.00 0.00 4.61
60 61 2.270352 TTGGGACACACATCTTCCAC 57.730 50.000 0.00 0.00 39.29 4.02
61 62 2.441375 TCTTTGGGACACACATCTTCCA 59.559 45.455 0.00 0.00 39.29 3.53
62 63 3.140325 TCTTTGGGACACACATCTTCC 57.860 47.619 0.00 0.00 39.29 3.46
63 64 4.023707 CACTTCTTTGGGACACACATCTTC 60.024 45.833 0.00 0.00 39.29 2.87
64 65 3.885297 CACTTCTTTGGGACACACATCTT 59.115 43.478 0.00 0.00 39.29 2.40
65 66 3.480470 CACTTCTTTGGGACACACATCT 58.520 45.455 0.00 0.00 39.29 2.90
66 67 2.554032 CCACTTCTTTGGGACACACATC 59.446 50.000 0.00 0.00 39.29 3.06
67 68 2.586425 CCACTTCTTTGGGACACACAT 58.414 47.619 0.00 0.00 39.29 3.21
68 69 2.051334 CCACTTCTTTGGGACACACA 57.949 50.000 0.00 0.00 39.29 3.72
76 77 2.357154 CCATACCTCCCCACTTCTTTGG 60.357 54.545 0.00 0.00 36.26 3.28
77 78 2.357154 CCCATACCTCCCCACTTCTTTG 60.357 54.545 0.00 0.00 0.00 2.77
78 79 1.923148 CCCATACCTCCCCACTTCTTT 59.077 52.381 0.00 0.00 0.00 2.52
79 80 1.203570 ACCCATACCTCCCCACTTCTT 60.204 52.381 0.00 0.00 0.00 2.52
80 81 0.421904 ACCCATACCTCCCCACTTCT 59.578 55.000 0.00 0.00 0.00 2.85
81 82 1.296002 AACCCATACCTCCCCACTTC 58.704 55.000 0.00 0.00 0.00 3.01
82 83 1.768265 AAACCCATACCTCCCCACTT 58.232 50.000 0.00 0.00 0.00 3.16
83 84 1.639108 GAAAACCCATACCTCCCCACT 59.361 52.381 0.00 0.00 0.00 4.00
84 85 1.680860 CGAAAACCCATACCTCCCCAC 60.681 57.143 0.00 0.00 0.00 4.61
85 86 0.621609 CGAAAACCCATACCTCCCCA 59.378 55.000 0.00 0.00 0.00 4.96
86 87 0.913924 TCGAAAACCCATACCTCCCC 59.086 55.000 0.00 0.00 0.00 4.81
87 88 1.835531 TCTCGAAAACCCATACCTCCC 59.164 52.381 0.00 0.00 0.00 4.30
88 89 3.840124 ATCTCGAAAACCCATACCTCC 57.160 47.619 0.00 0.00 0.00 4.30
89 90 5.011738 TGGATATCTCGAAAACCCATACCTC 59.988 44.000 2.05 0.00 0.00 3.85
90 91 4.905456 TGGATATCTCGAAAACCCATACCT 59.095 41.667 2.05 0.00 0.00 3.08
91 92 5.223449 TGGATATCTCGAAAACCCATACC 57.777 43.478 2.05 0.00 0.00 2.73
92 93 7.612677 ACTATGGATATCTCGAAAACCCATAC 58.387 38.462 2.05 0.00 34.98 2.39
93 94 7.792364 ACTATGGATATCTCGAAAACCCATA 57.208 36.000 2.05 0.00 34.98 2.74
94 95 6.688073 ACTATGGATATCTCGAAAACCCAT 57.312 37.500 2.05 0.00 36.88 4.00
95 96 6.494666 AACTATGGATATCTCGAAAACCCA 57.505 37.500 2.05 0.00 0.00 4.51
96 97 7.803279 AAAACTATGGATATCTCGAAAACCC 57.197 36.000 2.05 0.00 0.00 4.11
97 98 9.543783 ACTAAAACTATGGATATCTCGAAAACC 57.456 33.333 2.05 0.00 0.00 3.27
101 102 9.542462 CCAAACTAAAACTATGGATATCTCGAA 57.458 33.333 2.05 0.00 32.82 3.71
102 103 7.656137 GCCAAACTAAAACTATGGATATCTCGA 59.344 37.037 2.05 0.00 32.82 4.04
103 104 7.095187 GGCCAAACTAAAACTATGGATATCTCG 60.095 40.741 0.00 0.00 32.82 4.04
104 105 7.719633 TGGCCAAACTAAAACTATGGATATCTC 59.280 37.037 0.61 0.00 32.82 2.75
105 106 7.582719 TGGCCAAACTAAAACTATGGATATCT 58.417 34.615 0.61 0.00 32.82 1.98
106 107 7.817418 TGGCCAAACTAAAACTATGGATATC 57.183 36.000 0.61 0.00 32.82 1.63
107 108 7.255942 GCATGGCCAAACTAAAACTATGGATAT 60.256 37.037 10.96 0.00 32.82 1.63
108 109 6.040391 GCATGGCCAAACTAAAACTATGGATA 59.960 38.462 10.96 0.00 32.82 2.59
109 110 5.163416 GCATGGCCAAACTAAAACTATGGAT 60.163 40.000 10.96 0.00 32.82 3.41
110 111 4.159506 GCATGGCCAAACTAAAACTATGGA 59.840 41.667 10.96 0.00 32.82 3.41
111 112 4.160252 AGCATGGCCAAACTAAAACTATGG 59.840 41.667 10.96 0.00 0.00 2.74
112 113 5.329035 AGCATGGCCAAACTAAAACTATG 57.671 39.130 10.96 0.00 0.00 2.23
113 114 5.067805 GCTAGCATGGCCAAACTAAAACTAT 59.932 40.000 10.96 0.00 36.10 2.12
114 115 4.398044 GCTAGCATGGCCAAACTAAAACTA 59.602 41.667 10.96 2.03 36.10 2.24
115 116 3.193479 GCTAGCATGGCCAAACTAAAACT 59.807 43.478 10.96 0.79 36.10 2.66
116 117 3.511699 GCTAGCATGGCCAAACTAAAAC 58.488 45.455 10.96 3.48 36.10 2.43
117 118 3.866883 GCTAGCATGGCCAAACTAAAA 57.133 42.857 10.96 0.00 36.10 1.52
127 128 0.171903 CACTGTTTGGCTAGCATGGC 59.828 55.000 18.24 4.39 44.56 4.40
128 129 1.538047 ACACTGTTTGGCTAGCATGG 58.462 50.000 18.24 2.66 0.00 3.66
129 130 2.352030 CCAACACTGTTTGGCTAGCATG 60.352 50.000 18.24 5.17 39.78 4.06
130 131 1.888512 CCAACACTGTTTGGCTAGCAT 59.111 47.619 18.24 0.00 39.78 3.79
131 132 1.317613 CCAACACTGTTTGGCTAGCA 58.682 50.000 18.24 0.00 39.78 3.49
138 139 1.299316 CAGGCGCCAACACTGTTTG 60.299 57.895 31.54 11.01 0.00 2.93
139 140 0.823356 ATCAGGCGCCAACACTGTTT 60.823 50.000 31.54 0.00 34.02 2.83
140 141 0.823356 AATCAGGCGCCAACACTGTT 60.823 50.000 31.54 9.90 34.02 3.16
141 142 1.228245 AATCAGGCGCCAACACTGT 60.228 52.632 31.54 1.71 34.02 3.55
142 143 1.210931 CAATCAGGCGCCAACACTG 59.789 57.895 31.54 18.23 0.00 3.66
143 144 0.957395 CTCAATCAGGCGCCAACACT 60.957 55.000 31.54 3.61 0.00 3.55
144 145 0.955428 TCTCAATCAGGCGCCAACAC 60.955 55.000 31.54 0.00 0.00 3.32
145 146 0.250684 TTCTCAATCAGGCGCCAACA 60.251 50.000 31.54 12.35 0.00 3.33
146 147 0.169009 GTTCTCAATCAGGCGCCAAC 59.831 55.000 31.54 17.56 0.00 3.77
147 148 0.036732 AGTTCTCAATCAGGCGCCAA 59.963 50.000 31.54 17.44 0.00 4.52
148 149 0.901827 TAGTTCTCAATCAGGCGCCA 59.098 50.000 31.54 9.64 0.00 5.69
149 150 1.869767 CATAGTTCTCAATCAGGCGCC 59.130 52.381 21.89 21.89 0.00 6.53
150 151 2.541762 GTCATAGTTCTCAATCAGGCGC 59.458 50.000 0.00 0.00 0.00 6.53
151 152 4.047822 GAGTCATAGTTCTCAATCAGGCG 58.952 47.826 0.00 0.00 0.00 5.52
152 153 4.100808 AGGAGTCATAGTTCTCAATCAGGC 59.899 45.833 0.00 0.00 32.93 4.85
153 154 5.867903 AGGAGTCATAGTTCTCAATCAGG 57.132 43.478 0.00 0.00 32.93 3.86
154 155 6.534436 CACAAGGAGTCATAGTTCTCAATCAG 59.466 42.308 0.00 0.00 32.93 2.90
155 156 6.014242 ACACAAGGAGTCATAGTTCTCAATCA 60.014 38.462 0.00 0.00 32.93 2.57
156 157 6.312426 CACACAAGGAGTCATAGTTCTCAATC 59.688 42.308 0.00 0.00 32.93 2.67
157 158 6.169094 CACACAAGGAGTCATAGTTCTCAAT 58.831 40.000 0.00 0.00 32.93 2.57
158 159 5.541845 CACACAAGGAGTCATAGTTCTCAA 58.458 41.667 0.00 0.00 32.93 3.02
159 160 4.561530 GCACACAAGGAGTCATAGTTCTCA 60.562 45.833 0.00 0.00 32.93 3.27
160 161 3.929610 GCACACAAGGAGTCATAGTTCTC 59.070 47.826 0.00 0.00 0.00 2.87
161 162 3.324846 TGCACACAAGGAGTCATAGTTCT 59.675 43.478 0.00 0.00 0.00 3.01
162 163 3.664107 TGCACACAAGGAGTCATAGTTC 58.336 45.455 0.00 0.00 0.00 3.01
163 164 3.769739 TGCACACAAGGAGTCATAGTT 57.230 42.857 0.00 0.00 0.00 2.24
164 165 3.769739 TTGCACACAAGGAGTCATAGT 57.230 42.857 0.00 0.00 0.00 2.12
165 166 3.438087 CCTTTGCACACAAGGAGTCATAG 59.562 47.826 9.69 0.00 37.04 2.23
166 167 3.181445 ACCTTTGCACACAAGGAGTCATA 60.181 43.478 20.16 0.00 37.04 2.15
167 168 2.233271 CCTTTGCACACAAGGAGTCAT 58.767 47.619 9.69 0.00 37.04 3.06
168 169 1.064758 ACCTTTGCACACAAGGAGTCA 60.065 47.619 20.16 0.00 37.04 3.41
169 170 1.680338 ACCTTTGCACACAAGGAGTC 58.320 50.000 20.16 0.00 37.04 3.36
170 171 2.024414 GAACCTTTGCACACAAGGAGT 58.976 47.619 20.16 8.94 37.04 3.85
171 172 2.301346 AGAACCTTTGCACACAAGGAG 58.699 47.619 20.16 0.00 37.04 3.69
172 173 2.435372 AGAACCTTTGCACACAAGGA 57.565 45.000 20.16 0.00 37.04 3.36
173 174 3.882888 TCTTAGAACCTTTGCACACAAGG 59.117 43.478 13.13 13.13 37.04 3.61
174 175 4.555511 GCTCTTAGAACCTTTGCACACAAG 60.556 45.833 0.00 0.00 37.04 3.16
175 176 3.315191 GCTCTTAGAACCTTTGCACACAA 59.685 43.478 0.00 0.00 0.00 3.33
176 177 2.878406 GCTCTTAGAACCTTTGCACACA 59.122 45.455 0.00 0.00 0.00 3.72
177 178 3.142174 AGCTCTTAGAACCTTTGCACAC 58.858 45.455 0.00 0.00 0.00 3.82
178 179 3.492102 AGCTCTTAGAACCTTTGCACA 57.508 42.857 0.00 0.00 0.00 4.57
179 180 4.998033 ACTTAGCTCTTAGAACCTTTGCAC 59.002 41.667 0.00 0.00 0.00 4.57
180 181 5.228945 ACTTAGCTCTTAGAACCTTTGCA 57.771 39.130 0.00 0.00 0.00 4.08
181 182 7.851387 AATACTTAGCTCTTAGAACCTTTGC 57.149 36.000 0.00 0.00 0.00 3.68
184 185 9.703677 AGAGTAATACTTAGCTCTTAGAACCTT 57.296 33.333 0.00 0.00 35.02 3.50
185 186 9.703677 AAGAGTAATACTTAGCTCTTAGAACCT 57.296 33.333 0.00 0.00 43.82 3.50
186 187 9.955208 GAAGAGTAATACTTAGCTCTTAGAACC 57.045 37.037 5.76 0.00 45.09 3.62
189 190 9.344772 CCAGAAGAGTAATACTTAGCTCTTAGA 57.655 37.037 5.76 0.00 45.09 2.10
190 191 9.127277 ACCAGAAGAGTAATACTTAGCTCTTAG 57.873 37.037 5.76 0.00 45.09 2.18
191 192 8.904834 CACCAGAAGAGTAATACTTAGCTCTTA 58.095 37.037 5.76 0.00 45.09 2.10
192 193 7.616150 TCACCAGAAGAGTAATACTTAGCTCTT 59.384 37.037 5.49 5.49 46.95 2.85
193 194 7.120051 TCACCAGAAGAGTAATACTTAGCTCT 58.880 38.462 0.00 0.00 39.70 4.09
194 195 7.336161 TCACCAGAAGAGTAATACTTAGCTC 57.664 40.000 0.00 0.00 0.00 4.09
195 196 7.906199 ATCACCAGAAGAGTAATACTTAGCT 57.094 36.000 0.00 0.00 0.00 3.32
196 197 8.821894 CAAATCACCAGAAGAGTAATACTTAGC 58.178 37.037 0.00 0.00 0.00 3.09
197 198 8.821894 GCAAATCACCAGAAGAGTAATACTTAG 58.178 37.037 0.00 0.00 0.00 2.18
198 199 8.540388 AGCAAATCACCAGAAGAGTAATACTTA 58.460 33.333 0.00 0.00 0.00 2.24
199 200 7.398024 AGCAAATCACCAGAAGAGTAATACTT 58.602 34.615 0.00 0.00 0.00 2.24
200 201 6.951971 AGCAAATCACCAGAAGAGTAATACT 58.048 36.000 0.00 0.00 0.00 2.12
201 202 8.718102 TTAGCAAATCACCAGAAGAGTAATAC 57.282 34.615 0.00 0.00 0.00 1.89
202 203 9.905713 ATTTAGCAAATCACCAGAAGAGTAATA 57.094 29.630 0.00 0.00 0.00 0.98
203 204 8.814038 ATTTAGCAAATCACCAGAAGAGTAAT 57.186 30.769 0.00 0.00 0.00 1.89
204 205 8.514594 CAATTTAGCAAATCACCAGAAGAGTAA 58.485 33.333 0.00 0.00 0.00 2.24
205 206 7.665559 ACAATTTAGCAAATCACCAGAAGAGTA 59.334 33.333 0.00 0.00 0.00 2.59
206 207 6.491403 ACAATTTAGCAAATCACCAGAAGAGT 59.509 34.615 0.00 0.00 0.00 3.24
207 208 6.917533 ACAATTTAGCAAATCACCAGAAGAG 58.082 36.000 0.00 0.00 0.00 2.85
208 209 6.899393 ACAATTTAGCAAATCACCAGAAGA 57.101 33.333 0.00 0.00 0.00 2.87
209 210 7.538678 GTGTACAATTTAGCAAATCACCAGAAG 59.461 37.037 0.00 0.00 0.00 2.85
210 211 7.230510 AGTGTACAATTTAGCAAATCACCAGAA 59.769 33.333 0.00 0.00 0.00 3.02
211 212 6.714810 AGTGTACAATTTAGCAAATCACCAGA 59.285 34.615 0.00 0.00 0.00 3.86
212 213 6.913170 AGTGTACAATTTAGCAAATCACCAG 58.087 36.000 0.00 0.00 0.00 4.00
213 214 6.892658 AGTGTACAATTTAGCAAATCACCA 57.107 33.333 0.00 0.00 0.00 4.17
226 227 9.308000 TGATGATCCCTTTTTAAGTGTACAATT 57.692 29.630 13.70 13.70 0.00 2.32
228 229 8.877864 ATGATGATCCCTTTTTAAGTGTACAA 57.122 30.769 0.00 0.00 0.00 2.41
232 233 9.479549 AACATATGATGATCCCTTTTTAAGTGT 57.520 29.630 10.38 0.00 0.00 3.55
237 238 8.837099 ACCAAACATATGATGATCCCTTTTTA 57.163 30.769 10.38 0.00 0.00 1.52
240 241 7.815383 TCTACCAAACATATGATGATCCCTTT 58.185 34.615 10.38 0.00 0.00 3.11
247 248 8.588472 CCAGATACTCTACCAAACATATGATGA 58.412 37.037 10.38 0.00 0.00 2.92
262 263 5.403558 TGGATTCCTGACCAGATACTCTA 57.596 43.478 3.95 0.00 0.00 2.43
270 271 4.081406 TGAATGTTTGGATTCCTGACCAG 58.919 43.478 3.95 0.00 37.48 4.00
274 275 6.015180 CCTTTCTTGAATGTTTGGATTCCTGA 60.015 38.462 3.95 0.00 32.20 3.86
275 276 6.161381 CCTTTCTTGAATGTTTGGATTCCTG 58.839 40.000 3.95 0.00 32.20 3.86
279 280 5.742838 GCACCCTTTCTTGAATGTTTGGATT 60.743 40.000 0.00 0.00 0.00 3.01
282 283 3.181467 TGCACCCTTTCTTGAATGTTTGG 60.181 43.478 0.00 0.00 0.00 3.28
300 301 3.290948 TTACCAACCCTCCATATGCAC 57.709 47.619 0.00 0.00 0.00 4.57
306 307 4.051478 TCATACCATTACCAACCCTCCAT 58.949 43.478 0.00 0.00 0.00 3.41
308 309 4.513406 TTCATACCATTACCAACCCTCC 57.487 45.455 0.00 0.00 0.00 4.30
318 319 9.874195 TCCCATATGTTGATTTTCATACCATTA 57.126 29.630 1.24 0.00 30.84 1.90
324 325 7.720957 CAGTCCTCCCATATGTTGATTTTCATA 59.279 37.037 1.24 0.00 0.00 2.15
333 334 3.054434 TCCAACAGTCCTCCCATATGTTG 60.054 47.826 8.91 8.91 46.44 3.33
336 337 4.263068 GGTATCCAACAGTCCTCCCATATG 60.263 50.000 0.00 0.00 0.00 1.78
357 358 2.060050 TCCGTGAATTGTTGTTGGGT 57.940 45.000 0.00 0.00 0.00 4.51
360 361 7.271223 GTGATTATCTTCCGTGAATTGTTGTTG 59.729 37.037 0.00 0.00 0.00 3.33
362 363 6.655003 AGTGATTATCTTCCGTGAATTGTTGT 59.345 34.615 0.00 0.00 0.00 3.32
363 364 6.963242 CAGTGATTATCTTCCGTGAATTGTTG 59.037 38.462 0.00 0.00 0.00 3.33
365 366 6.173339 ACAGTGATTATCTTCCGTGAATTGT 58.827 36.000 0.00 0.00 0.00 2.71
366 367 6.668541 ACAGTGATTATCTTCCGTGAATTG 57.331 37.500 0.00 0.00 0.00 2.32
373 374 4.101119 ACCCCTAACAGTGATTATCTTCCG 59.899 45.833 0.00 0.00 0.00 4.30
390 391 3.241156 TGTAAGCACACAGTTACCCCTA 58.759 45.455 0.00 0.00 0.00 3.53
396 397 7.496263 TCATTTACTGTTGTAAGCACACAGTTA 59.504 33.333 9.32 0.00 41.90 2.24
401 402 6.725246 AGTTCATTTACTGTTGTAAGCACAC 58.275 36.000 0.00 0.00 39.49 3.82
408 409 9.005777 GGGTTGATAAGTTCATTTACTGTTGTA 57.994 33.333 0.00 0.00 33.34 2.41
413 414 6.404734 GGCTGGGTTGATAAGTTCATTTACTG 60.405 42.308 0.00 0.00 33.34 2.74
414 415 5.652452 GGCTGGGTTGATAAGTTCATTTACT 59.348 40.000 0.00 0.00 33.34 2.24
417 418 4.677182 AGGCTGGGTTGATAAGTTCATTT 58.323 39.130 0.00 0.00 33.34 2.32
436 437 0.548031 TCATCCCATTCACCAGAGGC 59.452 55.000 0.00 0.00 0.00 4.70
437 438 2.507058 TCTTCATCCCATTCACCAGAGG 59.493 50.000 0.00 0.00 0.00 3.69
439 440 3.588842 AGTTCTTCATCCCATTCACCAGA 59.411 43.478 0.00 0.00 0.00 3.86
442 443 3.955471 TGAGTTCTTCATCCCATTCACC 58.045 45.455 0.00 0.00 0.00 4.02
453 454 3.744238 TTGTCACGGATGAGTTCTTCA 57.256 42.857 0.00 0.00 40.85 3.02
456 457 5.278463 CCAAAAATTGTCACGGATGAGTTCT 60.278 40.000 0.00 0.00 34.75 3.01
459 460 4.141287 TCCAAAAATTGTCACGGATGAGT 58.859 39.130 0.00 0.00 34.75 3.41
462 463 4.764679 TCTCCAAAAATTGTCACGGATG 57.235 40.909 0.00 0.00 0.00 3.51
465 466 6.494893 TCTATTCTCCAAAAATTGTCACGG 57.505 37.500 0.00 0.00 0.00 4.94
468 469 7.394077 TCTGCATCTATTCTCCAAAAATTGTCA 59.606 33.333 0.00 0.00 0.00 3.58
482 483 9.950496 TTTATAGGATCCTTTCTGCATCTATTC 57.050 33.333 22.03 0.00 0.00 1.75
488 489 7.038302 TCGGTATTTATAGGATCCTTTCTGCAT 60.038 37.037 22.03 8.70 0.00 3.96
489 490 6.269077 TCGGTATTTATAGGATCCTTTCTGCA 59.731 38.462 22.03 0.00 0.00 4.41
495 496 9.101325 TGAAAGATCGGTATTTATAGGATCCTT 57.899 33.333 22.03 10.49 35.29 3.36
501 502 6.591834 CCTGCTGAAAGATCGGTATTTATAGG 59.408 42.308 0.00 0.00 34.07 2.57
504 505 6.174720 TCCTGCTGAAAGATCGGTATTTAT 57.825 37.500 0.00 0.00 34.07 1.40
505 506 5.607939 TCCTGCTGAAAGATCGGTATTTA 57.392 39.130 0.00 0.00 34.07 1.40
506 507 4.487714 TCCTGCTGAAAGATCGGTATTT 57.512 40.909 0.00 0.00 34.07 1.40
509 510 3.596214 GTTTCCTGCTGAAAGATCGGTA 58.404 45.455 2.76 0.00 43.46 4.02
510 511 2.427506 GTTTCCTGCTGAAAGATCGGT 58.572 47.619 2.76 0.00 43.46 4.69
519 520 0.984230 AATCCTCCGTTTCCTGCTGA 59.016 50.000 0.00 0.00 0.00 4.26
525 526 1.135774 GCAACGAAATCCTCCGTTTCC 60.136 52.381 0.00 0.00 45.30 3.13
537 538 2.881513 TGTAAGATGCCAAGCAACGAAA 59.118 40.909 0.00 0.00 43.62 3.46
558 559 8.250143 ACCAGACAGAAAATTTACCAGATTTT 57.750 30.769 0.00 0.00 38.89 1.82
561 562 6.542821 TGACCAGACAGAAAATTTACCAGAT 58.457 36.000 0.00 0.00 0.00 2.90
564 565 4.518970 GCTGACCAGACAGAAAATTTACCA 59.481 41.667 0.47 0.00 39.94 3.25
570 571 5.234466 AGTAAGCTGACCAGACAGAAAAT 57.766 39.130 0.00 0.00 39.94 1.82
575 576 2.159366 CCGTAGTAAGCTGACCAGACAG 60.159 54.545 0.00 0.00 40.43 3.51
576 577 1.816835 CCGTAGTAAGCTGACCAGACA 59.183 52.381 0.00 0.00 0.00 3.41
577 578 1.134560 CCCGTAGTAAGCTGACCAGAC 59.865 57.143 0.00 0.00 0.00 3.51
578 579 1.471119 CCCGTAGTAAGCTGACCAGA 58.529 55.000 0.00 0.00 0.00 3.86
580 581 0.901114 TGCCCGTAGTAAGCTGACCA 60.901 55.000 0.00 0.00 0.00 4.02
581 582 0.248289 TTGCCCGTAGTAAGCTGACC 59.752 55.000 0.00 0.00 0.00 4.02
591 593 1.338136 ACTCCTCCCATTGCCCGTAG 61.338 60.000 0.00 0.00 0.00 3.51
594 596 0.474184 AATACTCCTCCCATTGCCCG 59.526 55.000 0.00 0.00 0.00 6.13
595 597 3.330701 TCATAATACTCCTCCCATTGCCC 59.669 47.826 0.00 0.00 0.00 5.36
596 598 4.640771 TCATAATACTCCTCCCATTGCC 57.359 45.455 0.00 0.00 0.00 4.52
633 635 8.208903 GCCTTAGAACCACTTATATTGTTAGGA 58.791 37.037 0.00 0.00 0.00 2.94
637 639 7.172342 TGTGCCTTAGAACCACTTATATTGTT 58.828 34.615 0.00 0.00 0.00 2.83
640 642 6.998673 GGATGTGCCTTAGAACCACTTATATT 59.001 38.462 0.00 0.00 0.00 1.28
641 643 6.101150 TGGATGTGCCTTAGAACCACTTATAT 59.899 38.462 0.00 0.00 37.63 0.86
642 644 5.427157 TGGATGTGCCTTAGAACCACTTATA 59.573 40.000 0.00 0.00 37.63 0.98
648 650 1.985159 ACTGGATGTGCCTTAGAACCA 59.015 47.619 0.00 0.00 37.63 3.67
651 653 2.237143 CCAGACTGGATGTGCCTTAGAA 59.763 50.000 17.22 0.00 40.96 2.10
654 656 1.951209 TCCAGACTGGATGTGCCTTA 58.049 50.000 20.74 0.00 42.67 2.69
655 657 2.777536 TCCAGACTGGATGTGCCTT 58.222 52.632 20.74 0.00 42.67 4.35
656 658 4.567195 TCCAGACTGGATGTGCCT 57.433 55.556 20.74 0.00 42.67 4.75
669 671 4.655963 TCAGATTCCAAAGTTCCTTCCAG 58.344 43.478 0.00 0.00 0.00 3.86
708 710 9.482627 TGTAAACATCGCCAAAGAAATATTTTT 57.517 25.926 1.43 0.00 0.00 1.94
713 715 7.247728 GTCATGTAAACATCGCCAAAGAAATA 58.752 34.615 0.00 0.00 33.61 1.40
715 717 5.457140 GTCATGTAAACATCGCCAAAGAAA 58.543 37.500 0.00 0.00 33.61 2.52
716 718 4.377943 CGTCATGTAAACATCGCCAAAGAA 60.378 41.667 0.00 0.00 33.61 2.52
724 726 4.375005 CGGAATAGCGTCATGTAAACATCG 60.375 45.833 0.00 0.00 33.61 3.84
725 727 4.506654 ACGGAATAGCGTCATGTAAACATC 59.493 41.667 0.00 0.00 33.61 3.06
730 732 3.513680 ACACGGAATAGCGTCATGTAA 57.486 42.857 0.00 0.00 0.00 2.41
732 734 1.999735 CAACACGGAATAGCGTCATGT 59.000 47.619 0.00 0.00 0.00 3.21
738 740 1.060937 GCAGCAACACGGAATAGCG 59.939 57.895 0.00 0.00 0.00 4.26
739 741 1.060937 CGCAGCAACACGGAATAGC 59.939 57.895 0.00 0.00 0.00 2.97
741 743 0.037697 AGACGCAGCAACACGGAATA 60.038 50.000 0.00 0.00 0.00 1.75
742 744 0.884704 AAGACGCAGCAACACGGAAT 60.885 50.000 0.00 0.00 0.00 3.01
744 746 0.666274 CTAAGACGCAGCAACACGGA 60.666 55.000 0.00 0.00 0.00 4.69
747 749 2.234613 TGCTAAGACGCAGCAACAC 58.765 52.632 1.99 0.00 45.71 3.32
753 755 2.135139 TGTCTGTTTGCTAAGACGCAG 58.865 47.619 0.00 0.00 44.75 5.18
756 758 6.366332 GGGATATATGTCTGTTTGCTAAGACG 59.634 42.308 0.00 0.00 44.75 4.18
757 759 6.366332 CGGGATATATGTCTGTTTGCTAAGAC 59.634 42.308 0.00 0.00 42.61 3.01
759 761 5.120830 GCGGGATATATGTCTGTTTGCTAAG 59.879 44.000 0.00 0.00 0.00 2.18
768 770 3.854666 CAAGGAGCGGGATATATGTCTG 58.145 50.000 0.00 0.00 0.00 3.51
771 773 2.770164 GCAAGGAGCGGGATATATGT 57.230 50.000 0.00 0.00 0.00 2.29
786 788 2.083167 AACAAATCGGGCATTGCAAG 57.917 45.000 11.39 3.62 0.00 4.01
787 789 2.297315 TGTAACAAATCGGGCATTGCAA 59.703 40.909 11.39 0.00 0.00 4.08
788 790 1.889170 TGTAACAAATCGGGCATTGCA 59.111 42.857 11.39 0.00 0.00 4.08
789 791 2.645730 TGTAACAAATCGGGCATTGC 57.354 45.000 0.00 0.00 0.00 3.56
795 797 6.130298 TCTGCATATTTGTAACAAATCGGG 57.870 37.500 0.00 0.00 0.00 5.14
797 799 7.015226 TCCTCTGCATATTTGTAACAAATCG 57.985 36.000 0.00 0.00 0.00 3.34
804 806 8.374743 TGTGCTATATCCTCTGCATATTTGTAA 58.625 33.333 0.00 0.00 37.76 2.41
806 808 6.772605 TGTGCTATATCCTCTGCATATTTGT 58.227 36.000 0.00 0.00 37.76 2.83
809 811 8.155510 CCATATGTGCTATATCCTCTGCATATT 58.844 37.037 1.24 0.00 38.07 1.28
810 812 7.677892 CCATATGTGCTATATCCTCTGCATAT 58.322 38.462 1.24 0.00 39.73 1.78
811 813 6.463472 GCCATATGTGCTATATCCTCTGCATA 60.463 42.308 1.24 0.00 37.76 3.14
816 818 4.026744 ACGCCATATGTGCTATATCCTCT 58.973 43.478 12.45 0.00 0.00 3.69
828 830 7.485418 TCGATTACATTTAAACGCCATATGT 57.515 32.000 1.24 0.00 34.42 2.29
836 838 5.062934 TCCTGTGCTCGATTACATTTAAACG 59.937 40.000 2.81 0.00 35.42 3.60
837 839 6.417191 TCCTGTGCTCGATTACATTTAAAC 57.583 37.500 2.81 0.00 0.00 2.01
840 842 4.161565 ACCTCCTGTGCTCGATTACATTTA 59.838 41.667 2.81 0.00 0.00 1.40
861 863 2.125766 GACCCAGTCCCTTCCACACC 62.126 65.000 0.00 0.00 0.00 4.16
864 866 0.903236 GTAGACCCAGTCCCTTCCAC 59.097 60.000 0.00 0.00 32.18 4.02
869 871 2.112279 TTGTTGTAGACCCAGTCCCT 57.888 50.000 0.00 0.00 32.18 4.20
871 873 4.015872 TCATTTGTTGTAGACCCAGTCC 57.984 45.455 0.00 0.00 32.18 3.85
873 875 9.174166 GTATTTATCATTTGTTGTAGACCCAGT 57.826 33.333 0.00 0.00 0.00 4.00
876 878 9.174166 ACTGTATTTATCATTTGTTGTAGACCC 57.826 33.333 0.00 0.00 0.00 4.46
885 887 9.326413 GGTACAGCTACTGTATTTATCATTTGT 57.674 33.333 10.41 0.00 46.56 2.83
886 888 9.547753 AGGTACAGCTACTGTATTTATCATTTG 57.452 33.333 10.41 0.00 46.56 2.32
891 893 7.052142 ACCAGGTACAGCTACTGTATTTATC 57.948 40.000 10.41 0.00 46.56 1.75
894 896 4.142227 CGACCAGGTACAGCTACTGTATTT 60.142 45.833 10.41 0.50 46.56 1.40
895 897 3.380637 CGACCAGGTACAGCTACTGTATT 59.619 47.826 10.41 0.82 46.56 1.89
896 898 2.950309 CGACCAGGTACAGCTACTGTAT 59.050 50.000 10.41 0.00 46.56 2.29
908 910 0.541063 TGCTCCAGAACGACCAGGTA 60.541 55.000 0.00 0.00 0.00 3.08
915 917 1.328279 TGACTTCTGCTCCAGAACGA 58.672 50.000 3.69 0.00 44.27 3.85
919 921 1.829849 CTCCATGACTTCTGCTCCAGA 59.170 52.381 0.00 0.00 38.87 3.86
921 923 1.942776 TCTCCATGACTTCTGCTCCA 58.057 50.000 0.00 0.00 0.00 3.86
931 933 3.196469 TCACACAGAAGGATCTCCATGAC 59.804 47.826 0.00 0.00 38.89 3.06
939 941 3.434984 GCTCTTTGTCACACAGAAGGATC 59.565 47.826 0.00 0.00 0.00 3.36
943 945 3.811497 TCATGCTCTTTGTCACACAGAAG 59.189 43.478 0.00 0.00 0.00 2.85
948 950 4.154737 TGCTTATCATGCTCTTTGTCACAC 59.845 41.667 0.00 0.00 0.00 3.82
955 957 6.774170 TCCATGTATTGCTTATCATGCTCTTT 59.226 34.615 0.00 0.00 37.09 2.52
960 962 7.470079 CACTATCCATGTATTGCTTATCATGC 58.530 38.462 0.00 0.00 37.09 4.06
964 966 6.093219 CCAGCACTATCCATGTATTGCTTATC 59.907 42.308 5.71 0.00 38.17 1.75
966 968 5.071653 TCCAGCACTATCCATGTATTGCTTA 59.928 40.000 5.71 0.00 38.17 3.09
975 977 5.077134 TCGATAATCCAGCACTATCCATG 57.923 43.478 0.00 0.00 0.00 3.66
979 981 6.428159 ACCATTTTCGATAATCCAGCACTATC 59.572 38.462 0.00 0.00 0.00 2.08
980 982 6.205464 CACCATTTTCGATAATCCAGCACTAT 59.795 38.462 0.00 0.00 0.00 2.12
981 983 5.527214 CACCATTTTCGATAATCCAGCACTA 59.473 40.000 0.00 0.00 0.00 2.74
983 985 4.498009 CCACCATTTTCGATAATCCAGCAC 60.498 45.833 0.00 0.00 0.00 4.40
986 988 3.631686 TGCCACCATTTTCGATAATCCAG 59.368 43.478 0.00 0.00 0.00 3.86
989 991 4.900635 ACTGCCACCATTTTCGATAATC 57.099 40.909 0.00 0.00 0.00 1.75
991 993 5.004448 TGTAACTGCCACCATTTTCGATAA 58.996 37.500 0.00 0.00 0.00 1.75
994 996 2.852449 TGTAACTGCCACCATTTTCGA 58.148 42.857 0.00 0.00 0.00 3.71
996 998 3.005791 AGCTTGTAACTGCCACCATTTTC 59.994 43.478 0.00 0.00 0.00 2.29
997 999 2.965147 AGCTTGTAACTGCCACCATTTT 59.035 40.909 0.00 0.00 0.00 1.82
999 1001 1.888512 CAGCTTGTAACTGCCACCATT 59.111 47.619 0.00 0.00 0.00 3.16
1000 1002 1.538047 CAGCTTGTAACTGCCACCAT 58.462 50.000 0.00 0.00 0.00 3.55
1008 1010 3.767131 ACCACAAAAACCAGCTTGTAACT 59.233 39.130 0.00 0.00 34.04 2.24
1011 1013 2.428890 CCACCACAAAAACCAGCTTGTA 59.571 45.455 0.00 0.00 34.04 2.41
1014 1016 0.177836 GCCACCACAAAAACCAGCTT 59.822 50.000 0.00 0.00 0.00 3.74
1022 1024 0.843309 TCTCCTCTGCCACCACAAAA 59.157 50.000 0.00 0.00 0.00 2.44
1024 1026 1.053835 TGTCTCCTCTGCCACCACAA 61.054 55.000 0.00 0.00 0.00 3.33
1026 1028 0.326264 ATTGTCTCCTCTGCCACCAC 59.674 55.000 0.00 0.00 0.00 4.16
1036 1038 0.396435 TCACGCACCAATTGTCTCCT 59.604 50.000 4.43 0.00 0.00 3.69
1038 1040 0.798776 CCTCACGCACCAATTGTCTC 59.201 55.000 4.43 0.00 0.00 3.36
1045 1047 0.468226 ACTTCTTCCTCACGCACCAA 59.532 50.000 0.00 0.00 0.00 3.67
1047 1049 0.670854 GGACTTCTTCCTCACGCACC 60.671 60.000 0.00 0.00 41.95 5.01
1050 1052 1.149148 GTTGGACTTCTTCCTCACGC 58.851 55.000 0.00 0.00 46.10 5.34
1051 1053 1.070134 TGGTTGGACTTCTTCCTCACG 59.930 52.381 0.00 0.00 46.10 4.35
1052 1054 2.495084 GTGGTTGGACTTCTTCCTCAC 58.505 52.381 0.00 0.00 46.10 3.51
1053 1055 1.420138 GGTGGTTGGACTTCTTCCTCA 59.580 52.381 0.00 0.00 46.10 3.86
1054 1056 1.420138 TGGTGGTTGGACTTCTTCCTC 59.580 52.381 0.00 0.00 46.10 3.71
1056 1058 1.954382 GTTGGTGGTTGGACTTCTTCC 59.046 52.381 0.00 0.00 46.13 3.46
1062 1064 2.590575 CGCGTTGGTGGTTGGACT 60.591 61.111 0.00 0.00 0.00 3.85
1069 1071 1.206578 GACATGAACGCGTTGGTGG 59.793 57.895 31.89 17.55 0.00 4.61
1075 1077 0.669318 ATCGGTTGACATGAACGCGT 60.669 50.000 5.58 5.58 0.00 6.01
1076 1078 0.025001 GATCGGTTGACATGAACGCG 59.975 55.000 3.53 3.53 0.00 6.01
1080 1082 1.678728 GCCCTGATCGGTTGACATGAA 60.679 52.381 0.00 0.00 0.00 2.57
1086 1088 1.667154 CGAGAGCCCTGATCGGTTGA 61.667 60.000 0.00 0.00 32.93 3.18
1101 1103 0.881118 GTGCAAAATTCAGGGCGAGA 59.119 50.000 0.00 0.00 0.00 4.04
1105 1107 2.088178 CGCGTGCAAAATTCAGGGC 61.088 57.895 0.00 0.00 0.00 5.19
1106 1108 2.088178 GCGCGTGCAAAATTCAGGG 61.088 57.895 17.66 0.00 42.15 4.45
1107 1109 2.427765 CGCGCGTGCAAAATTCAGG 61.428 57.895 24.19 0.00 42.97 3.86
1119 1121 4.916273 GGTTTGTTTGCCGCGCGT 62.916 61.111 29.95 0.00 0.00 6.01
1120 1122 4.914420 TGGTTTGTTTGCCGCGCG 62.914 61.111 25.67 25.67 0.00 6.86
1122 1124 0.519519 TAGATGGTTTGTTTGCCGCG 59.480 50.000 0.00 0.00 0.00 6.46
1128 1130 6.204882 GTCTAGCTGTTGTAGATGGTTTGTTT 59.795 38.462 0.00 0.00 0.00 2.83
1131 1133 5.482908 AGTCTAGCTGTTGTAGATGGTTTG 58.517 41.667 0.00 0.00 0.00 2.93
1137 1139 9.155975 CAACAATTTAGTCTAGCTGTTGTAGAT 57.844 33.333 15.78 0.00 39.05 1.98
1138 1140 7.602644 CCAACAATTTAGTCTAGCTGTTGTAGA 59.397 37.037 19.25 0.00 41.16 2.59
1140 1142 7.446769 TCCAACAATTTAGTCTAGCTGTTGTA 58.553 34.615 19.25 9.26 41.16 2.41
1141 1143 6.296026 TCCAACAATTTAGTCTAGCTGTTGT 58.704 36.000 19.25 10.32 41.16 3.32
1143 1145 7.224297 TCTTCCAACAATTTAGTCTAGCTGTT 58.776 34.615 0.00 0.00 0.00 3.16
1147 1149 5.065346 GCCTCTTCCAACAATTTAGTCTAGC 59.935 44.000 0.00 0.00 0.00 3.42
1149 1151 5.497474 GGCCTCTTCCAACAATTTAGTCTA 58.503 41.667 0.00 0.00 0.00 2.59
1155 1157 1.149923 AGGGGCCTCTTCCAACAATTT 59.850 47.619 0.00 0.00 0.00 1.82
1159 1161 2.538141 CCAGGGGCCTCTTCCAACA 61.538 63.158 0.00 0.00 0.00 3.33
1160 1162 2.356667 CCAGGGGCCTCTTCCAAC 59.643 66.667 0.00 0.00 0.00 3.77
1221 1223 2.174107 CATGCGCCAGTGTTGTCG 59.826 61.111 4.18 0.00 0.00 4.35
1306 1308 0.900182 TCAGCTGACTCCACATCCGT 60.900 55.000 13.74 0.00 0.00 4.69
1393 1396 9.872684 AGATTCCATGACAATAAGATTTACCAT 57.127 29.630 0.00 0.00 0.00 3.55
1523 1526 6.128090 CGCATGAGCTACCATATTTGATTCAT 60.128 38.462 0.00 0.00 39.10 2.57
1809 1814 3.465403 CTGCTCTGAGGACCCGGG 61.465 72.222 22.25 22.25 0.00 5.73
1824 1829 2.289945 CCACAGGGAAGGAAGAGAACTG 60.290 54.545 0.00 0.00 35.59 3.16
1825 1830 1.981495 CCACAGGGAAGGAAGAGAACT 59.019 52.381 0.00 0.00 35.59 3.01
1843 1849 3.318313 AGGAACTGAAACTTCCTCTCCA 58.682 45.455 0.00 0.00 43.55 3.86
1974 1983 3.455910 CCTCCCTGAGACATCACCAAATA 59.544 47.826 0.00 0.00 0.00 1.40
2001 2010 2.548057 GCAAAGTTGATCAGGTGTTCGA 59.452 45.455 0.00 0.00 0.00 3.71
2004 2013 4.942761 AATGCAAAGTTGATCAGGTGTT 57.057 36.364 0.00 0.00 0.00 3.32
2122 2132 1.141881 CTGAGCTACAATCGCCCGT 59.858 57.895 0.00 0.00 0.00 5.28
2133 2143 1.342374 TGAGGATGCAGGTCTGAGCTA 60.342 52.381 9.32 0.00 0.00 3.32
2367 2378 1.401018 GGACGTGCCAATACTGCAAAC 60.401 52.381 0.00 0.00 41.06 2.93
2403 2414 1.764854 GGATCAGTAGGGGGCCGAA 60.765 63.158 0.00 0.00 0.00 4.30
2406 2417 1.351350 GTTATGGATCAGTAGGGGGCC 59.649 57.143 0.00 0.00 0.00 5.80
2481 2493 1.549243 TACATCACAGCTCCCCGCAA 61.549 55.000 0.00 0.00 42.61 4.85
2483 2495 1.227380 CTACATCACAGCTCCCCGC 60.227 63.158 0.00 0.00 39.57 6.13
2526 2539 0.984995 GGTAGCTTCCCAGAGGTGTT 59.015 55.000 0.00 0.00 0.00 3.32
2616 2630 1.710013 TTCGATGTGAAGCCGAAGAC 58.290 50.000 0.00 0.00 37.39 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.