Multiple sequence alignment - TraesCS2A01G117800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G117800 chr2A 100.000 6144 0 0 1 6144 68245647 68251790 0.000000e+00 11346.0
1 TraesCS2A01G117800 chr2A 84.615 117 17 1 129 245 770247242 770247357 1.400000e-21 115.0
2 TraesCS2A01G117800 chr2D 95.564 2705 99 13 3445 6140 66762398 66759706 0.000000e+00 4311.0
3 TraesCS2A01G117800 chr2D 90.651 1551 98 26 1820 3362 66763908 66762397 0.000000e+00 2017.0
4 TraesCS2A01G117800 chr2D 91.370 1321 49 24 568 1843 66765255 66763955 0.000000e+00 1748.0
5 TraesCS2A01G117800 chr2D 82.888 187 11 7 354 538 66765574 66765407 1.380000e-31 148.0
6 TraesCS2A01G117800 chr2D 85.827 127 18 0 1 127 66765743 66765617 1.070000e-27 135.0
7 TraesCS2A01G117800 chr2D 94.595 37 2 0 487 523 651005041 651005005 2.390000e-04 58.4
8 TraesCS2A01G117800 chr2D 96.875 32 1 0 484 515 14720087 14720118 3.000000e-03 54.7
9 TraesCS2A01G117800 chr2B 93.393 2785 91 31 632 3362 104812650 104815395 0.000000e+00 4037.0
10 TraesCS2A01G117800 chr2B 96.473 1446 47 2 3445 4890 104815394 104816835 0.000000e+00 2385.0
11 TraesCS2A01G117800 chr2B 97.063 647 15 2 5500 6144 104817428 104818072 0.000000e+00 1086.0
12 TraesCS2A01G117800 chr2B 95.918 588 19 5 4945 5530 104816841 104817425 0.000000e+00 948.0
13 TraesCS2A01G117800 chr2B 91.667 60 5 0 533 592 142749648 142749707 3.950000e-12 84.2
14 TraesCS2A01G117800 chr7B 97.959 98 1 1 3360 3457 194555208 194555112 1.060000e-37 169.0
15 TraesCS2A01G117800 chr7B 100.000 88 0 0 3361 3448 465970583 465970496 4.930000e-36 163.0
16 TraesCS2A01G117800 chr7B 87.037 108 14 0 131 238 428837777 428837670 8.360000e-24 122.0
17 TraesCS2A01G117800 chr5B 98.901 91 1 0 3357 3447 678507289 678507379 4.930000e-36 163.0
18 TraesCS2A01G117800 chr5A 96.000 100 4 0 3352 3451 113799655 113799754 4.930000e-36 163.0
19 TraesCS2A01G117800 chr5A 91.525 59 5 0 533 591 329991894 329991952 1.420000e-11 82.4
20 TraesCS2A01G117800 chr3A 100.000 87 0 0 3361 3447 520438076 520437990 1.770000e-35 161.0
21 TraesCS2A01G117800 chr3A 87.156 109 10 4 132 238 503822287 503822393 3.010000e-23 121.0
22 TraesCS2A01G117800 chr1B 96.875 96 3 0 3351 3446 5749356 5749451 1.770000e-35 161.0
23 TraesCS2A01G117800 chr1B 96.809 94 2 1 3356 3448 61951782 61951689 8.250000e-34 156.0
24 TraesCS2A01G117800 chr4B 95.960 99 2 2 3350 3447 399947055 399946958 6.370000e-35 159.0
25 TraesCS2A01G117800 chr4B 91.667 60 5 0 535 594 610571468 610571409 3.950000e-12 84.2
26 TraesCS2A01G117800 chr4B 80.247 81 12 2 3490 3570 163800342 163800418 2.390000e-04 58.4
27 TraesCS2A01G117800 chr7A 95.876 97 4 0 3351 3447 11385136 11385040 2.290000e-34 158.0
28 TraesCS2A01G117800 chr3D 87.156 109 10 4 132 238 379826347 379826241 3.010000e-23 121.0
29 TraesCS2A01G117800 chr3D 87.143 70 6 2 523 592 573435108 573435174 6.600000e-10 76.8
30 TraesCS2A01G117800 chr3B 87.156 109 10 4 132 238 495475485 495475591 3.010000e-23 121.0
31 TraesCS2A01G117800 chrUn 85.088 114 16 1 126 239 62662180 62662068 1.400000e-21 115.0
32 TraesCS2A01G117800 chr6B 85.047 107 16 0 132 238 93568454 93568348 6.510000e-20 110.0
33 TraesCS2A01G117800 chr7D 83.636 110 18 0 129 238 627271202 627271311 3.030000e-18 104.0
34 TraesCS2A01G117800 chr7D 91.379 58 5 0 534 591 94796699 94796756 5.110000e-11 80.5
35 TraesCS2A01G117800 chr7D 100.000 38 0 0 487 524 529775744 529775707 3.070000e-08 71.3
36 TraesCS2A01G117800 chr7D 100.000 29 0 0 487 515 583069042 583069014 3.000000e-03 54.7
37 TraesCS2A01G117800 chr6D 83.929 112 14 4 129 238 306429311 306429202 3.030000e-18 104.0
38 TraesCS2A01G117800 chr4A 92.063 63 5 0 536 598 84537412 84537350 8.480000e-14 89.8
39 TraesCS2A01G117800 chr1D 91.379 58 3 2 546 602 95870172 95870228 1.840000e-10 78.7
40 TraesCS2A01G117800 chr6A 91.071 56 5 0 536 591 1987247 1987302 6.600000e-10 76.8
41 TraesCS2A01G117800 chr6A 86.957 69 6 1 523 591 409086370 409086435 2.380000e-09 75.0
42 TraesCS2A01G117800 chr5D 94.872 39 2 0 484 522 447194270 447194308 1.850000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G117800 chr2A 68245647 68251790 6143 False 11346.0 11346 100.00000 1 6144 1 chr2A.!!$F1 6143
1 TraesCS2A01G117800 chr2D 66759706 66765743 6037 True 1671.8 4311 89.26000 1 6140 5 chr2D.!!$R2 6139
2 TraesCS2A01G117800 chr2B 104812650 104818072 5422 False 2114.0 4037 95.71175 632 6144 4 chr2B.!!$F2 5512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 327 0.037975 TTTTAGCGGGAGGTGACGTC 60.038 55.000 9.11 9.11 42.76 4.34 F
327 328 0.896940 TTTAGCGGGAGGTGACGTCT 60.897 55.000 17.92 0.00 42.76 4.18 F
353 354 1.225881 CAGCGAGACGACTCTGACG 60.226 63.158 12.88 1.62 40.65 4.35 F
908 1053 1.264288 CTCGCCAAGAACACTTCAACC 59.736 52.381 0.00 0.00 0.00 3.77 F
2325 2589 0.035820 GGCCCATAAAGTGTCGGTGA 60.036 55.000 0.00 0.00 0.00 4.02 F
2757 3023 0.263468 TGGGTGGGTCCAGATCGATA 59.737 55.000 0.00 0.00 38.11 2.92 F
2798 3064 0.318441 TGTTCGCAGAGGAGGAAGTG 59.682 55.000 0.00 0.00 38.43 3.16 F
4719 4991 0.110104 CTCTGGGAGGAATGATGGCC 59.890 60.000 0.00 0.00 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 1628 0.254178 AGCACAGATCCATGTCCACC 59.746 55.000 0.00 0.0 0.00 4.61 R
1710 1900 0.756294 TCTCTCCCTTTCACGCAACA 59.244 50.000 0.00 0.0 0.00 3.33 R
1778 1968 1.151668 CTTCGGTTGCTTCAGACAGG 58.848 55.000 0.00 0.0 0.00 4.00 R
2564 2829 1.006086 CGTTGGCGCATTCACATCTA 58.994 50.000 10.83 0.0 0.00 1.98 R
3435 3707 0.108138 CAAGCCAACTACTCCCTCCG 60.108 60.000 0.00 0.0 0.00 4.63 R
3836 4108 0.903942 TTGCATTCCAATCAAGGGGC 59.096 50.000 0.00 0.0 0.00 5.80 R
4764 5036 2.954989 TGCGATCTCTATCAGCTTCACT 59.045 45.455 0.00 0.0 34.69 3.41 R
5898 6214 0.522626 CATCATGACAAAGCACGCCA 59.477 50.000 0.00 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.443394 TAAGATGGAGCCCAGCCGG 61.443 63.158 0.00 0.00 41.38 6.13
54 55 0.965439 CCGGTGGATGCAAAAGGAAA 59.035 50.000 0.00 0.00 0.00 3.13
58 59 3.554752 CGGTGGATGCAAAAGGAAAACAT 60.555 43.478 0.00 0.00 0.00 2.71
63 64 5.884792 TGGATGCAAAAGGAAAACATTGTTT 59.115 32.000 8.97 8.97 0.00 2.83
114 115 7.834068 TCTATTCTTCAAAGAGTGATTTCGG 57.166 36.000 0.00 0.00 35.70 4.30
122 123 3.059352 AGAGTGATTTCGGAAGGGTTG 57.941 47.619 0.00 0.00 0.00 3.77
127 128 4.404394 AGTGATTTCGGAAGGGTTGTTTTT 59.596 37.500 0.00 0.00 0.00 1.94
128 129 5.595133 AGTGATTTCGGAAGGGTTGTTTTTA 59.405 36.000 0.00 0.00 0.00 1.52
130 131 6.364976 GTGATTTCGGAAGGGTTGTTTTTATG 59.635 38.462 0.00 0.00 0.00 1.90
131 132 5.855740 TTTCGGAAGGGTTGTTTTTATGT 57.144 34.783 0.00 0.00 0.00 2.29
132 133 6.956202 TTTCGGAAGGGTTGTTTTTATGTA 57.044 33.333 0.00 0.00 0.00 2.29
133 134 5.945466 TCGGAAGGGTTGTTTTTATGTAC 57.055 39.130 0.00 0.00 0.00 2.90
134 135 5.623169 TCGGAAGGGTTGTTTTTATGTACT 58.377 37.500 0.00 0.00 0.00 2.73
135 136 5.702209 TCGGAAGGGTTGTTTTTATGTACTC 59.298 40.000 0.00 0.00 0.00 2.59
136 137 5.106436 CGGAAGGGTTGTTTTTATGTACTCC 60.106 44.000 0.00 0.00 0.00 3.85
137 138 5.184479 GGAAGGGTTGTTTTTATGTACTCCC 59.816 44.000 0.00 0.00 33.00 4.30
138 139 5.594199 AGGGTTGTTTTTATGTACTCCCT 57.406 39.130 0.00 0.00 35.92 4.20
139 140 5.567430 AGGGTTGTTTTTATGTACTCCCTC 58.433 41.667 0.00 0.00 35.91 4.30
140 141 4.703575 GGGTTGTTTTTATGTACTCCCTCC 59.296 45.833 0.00 0.00 0.00 4.30
141 142 4.393990 GGTTGTTTTTATGTACTCCCTCCG 59.606 45.833 0.00 0.00 0.00 4.63
142 143 4.895668 TGTTTTTATGTACTCCCTCCGT 57.104 40.909 0.00 0.00 0.00 4.69
143 144 5.231702 TGTTTTTATGTACTCCCTCCGTT 57.768 39.130 0.00 0.00 0.00 4.44
144 145 5.240121 TGTTTTTATGTACTCCCTCCGTTC 58.760 41.667 0.00 0.00 0.00 3.95
145 146 4.476628 TTTTATGTACTCCCTCCGTTCC 57.523 45.455 0.00 0.00 0.00 3.62
146 147 2.832643 TATGTACTCCCTCCGTTCCA 57.167 50.000 0.00 0.00 0.00 3.53
147 148 2.176247 ATGTACTCCCTCCGTTCCAT 57.824 50.000 0.00 0.00 0.00 3.41
148 149 2.832643 TGTACTCCCTCCGTTCCATA 57.167 50.000 0.00 0.00 0.00 2.74
149 150 3.323774 TGTACTCCCTCCGTTCCATAT 57.676 47.619 0.00 0.00 0.00 1.78
150 151 3.649843 TGTACTCCCTCCGTTCCATATT 58.350 45.455 0.00 0.00 0.00 1.28
151 152 4.806892 TGTACTCCCTCCGTTCCATATTA 58.193 43.478 0.00 0.00 0.00 0.98
152 153 4.586001 TGTACTCCCTCCGTTCCATATTAC 59.414 45.833 0.00 0.00 0.00 1.89
153 154 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
154 155 4.296056 ACTCCCTCCGTTCCATATTACTT 58.704 43.478 0.00 0.00 0.00 2.24
155 156 5.461327 ACTCCCTCCGTTCCATATTACTTA 58.539 41.667 0.00 0.00 0.00 2.24
156 157 6.082707 ACTCCCTCCGTTCCATATTACTTAT 58.917 40.000 0.00 0.00 0.00 1.73
157 158 6.210984 ACTCCCTCCGTTCCATATTACTTATC 59.789 42.308 0.00 0.00 0.00 1.75
158 159 6.079336 TCCCTCCGTTCCATATTACTTATCA 58.921 40.000 0.00 0.00 0.00 2.15
159 160 6.014840 TCCCTCCGTTCCATATTACTTATCAC 60.015 42.308 0.00 0.00 0.00 3.06
160 161 6.014499 CCCTCCGTTCCATATTACTTATCACT 60.014 42.308 0.00 0.00 0.00 3.41
161 162 7.091443 CCTCCGTTCCATATTACTTATCACTC 58.909 42.308 0.00 0.00 0.00 3.51
162 163 7.255836 CCTCCGTTCCATATTACTTATCACTCA 60.256 40.741 0.00 0.00 0.00 3.41
163 164 8.014070 TCCGTTCCATATTACTTATCACTCAA 57.986 34.615 0.00 0.00 0.00 3.02
164 165 8.479689 TCCGTTCCATATTACTTATCACTCAAA 58.520 33.333 0.00 0.00 0.00 2.69
165 166 8.548721 CCGTTCCATATTACTTATCACTCAAAC 58.451 37.037 0.00 0.00 0.00 2.93
166 167 8.266682 CGTTCCATATTACTTATCACTCAAACG 58.733 37.037 0.00 0.00 0.00 3.60
167 168 8.548721 GTTCCATATTACTTATCACTCAAACGG 58.451 37.037 0.00 0.00 0.00 4.44
168 169 8.014070 TCCATATTACTTATCACTCAAACGGA 57.986 34.615 0.00 0.00 0.00 4.69
169 170 8.647796 TCCATATTACTTATCACTCAAACGGAT 58.352 33.333 0.00 0.00 0.00 4.18
170 171 8.712363 CCATATTACTTATCACTCAAACGGATG 58.288 37.037 0.00 0.00 0.00 3.51
171 172 9.261180 CATATTACTTATCACTCAAACGGATGT 57.739 33.333 0.00 0.00 0.00 3.06
174 175 8.867112 TTACTTATCACTCAAACGGATGTATC 57.133 34.615 0.00 0.00 0.00 2.24
175 176 6.281405 ACTTATCACTCAAACGGATGTATCC 58.719 40.000 0.63 0.63 43.65 2.59
188 189 5.841957 GGATGTATCCAGCACTGAAATTT 57.158 39.130 6.03 0.00 46.38 1.82
189 190 5.585390 GGATGTATCCAGCACTGAAATTTG 58.415 41.667 6.03 0.00 46.38 2.32
190 191 5.126061 GGATGTATCCAGCACTGAAATTTGT 59.874 40.000 6.03 0.00 46.38 2.83
191 192 5.627499 TGTATCCAGCACTGAAATTTGTC 57.373 39.130 0.00 0.00 0.00 3.18
192 193 5.316167 TGTATCCAGCACTGAAATTTGTCT 58.684 37.500 0.00 0.00 0.00 3.41
193 194 6.472016 TGTATCCAGCACTGAAATTTGTCTA 58.528 36.000 0.00 0.00 0.00 2.59
194 195 6.595326 TGTATCCAGCACTGAAATTTGTCTAG 59.405 38.462 0.00 0.00 0.00 2.43
195 196 5.227569 TCCAGCACTGAAATTTGTCTAGA 57.772 39.130 0.00 0.00 0.00 2.43
196 197 5.809001 TCCAGCACTGAAATTTGTCTAGAT 58.191 37.500 0.00 0.00 0.00 1.98
197 198 5.645067 TCCAGCACTGAAATTTGTCTAGATG 59.355 40.000 0.00 0.00 0.00 2.90
198 199 5.330295 CAGCACTGAAATTTGTCTAGATGC 58.670 41.667 0.00 0.00 0.00 3.91
199 200 5.005740 AGCACTGAAATTTGTCTAGATGCA 58.994 37.500 9.55 0.00 0.00 3.96
200 201 5.651139 AGCACTGAAATTTGTCTAGATGCAT 59.349 36.000 0.00 0.00 0.00 3.96
201 202 5.970023 GCACTGAAATTTGTCTAGATGCATC 59.030 40.000 19.37 19.37 0.00 3.91
202 203 6.183360 GCACTGAAATTTGTCTAGATGCATCT 60.183 38.462 30.85 30.85 40.86 2.90
203 204 7.011763 GCACTGAAATTTGTCTAGATGCATCTA 59.988 37.037 29.86 29.86 38.32 1.98
204 205 9.053840 CACTGAAATTTGTCTAGATGCATCTAT 57.946 33.333 31.46 17.30 38.60 1.98
205 206 9.624373 ACTGAAATTTGTCTAGATGCATCTATT 57.376 29.630 31.46 22.05 38.60 1.73
211 212 7.643528 TTGTCTAGATGCATCTATTTAAGCG 57.356 36.000 31.46 19.86 38.60 4.68
212 213 6.981722 TGTCTAGATGCATCTATTTAAGCGA 58.018 36.000 31.46 21.52 38.60 4.93
213 214 6.863645 TGTCTAGATGCATCTATTTAAGCGAC 59.136 38.462 31.46 28.89 38.60 5.19
214 215 6.863645 GTCTAGATGCATCTATTTAAGCGACA 59.136 38.462 31.46 11.31 38.60 4.35
215 216 7.382488 GTCTAGATGCATCTATTTAAGCGACAA 59.618 37.037 31.46 11.12 38.60 3.18
216 217 6.536731 AGATGCATCTATTTAAGCGACAAG 57.463 37.500 27.73 0.00 34.85 3.16
217 218 6.051717 AGATGCATCTATTTAAGCGACAAGT 58.948 36.000 27.73 0.00 34.85 3.16
218 219 7.210174 AGATGCATCTATTTAAGCGACAAGTA 58.790 34.615 27.73 0.00 34.85 2.24
219 220 7.710907 AGATGCATCTATTTAAGCGACAAGTAA 59.289 33.333 27.73 0.00 34.85 2.24
220 221 7.786178 TGCATCTATTTAAGCGACAAGTAAT 57.214 32.000 0.00 0.00 0.00 1.89
221 222 8.880878 TGCATCTATTTAAGCGACAAGTAATA 57.119 30.769 0.00 0.00 0.00 0.98
222 223 9.489084 TGCATCTATTTAAGCGACAAGTAATAT 57.511 29.630 0.00 0.00 0.00 1.28
223 224 9.746711 GCATCTATTTAAGCGACAAGTAATATG 57.253 33.333 0.00 0.00 0.00 1.78
229 230 7.490962 TTAAGCGACAAGTAATATGGATTGG 57.509 36.000 0.00 0.00 0.00 3.16
230 231 5.290493 AGCGACAAGTAATATGGATTGGA 57.710 39.130 0.00 0.00 0.00 3.53
231 232 5.300752 AGCGACAAGTAATATGGATTGGAG 58.699 41.667 0.00 0.00 0.00 3.86
232 233 4.452455 GCGACAAGTAATATGGATTGGAGG 59.548 45.833 0.00 0.00 0.00 4.30
233 234 4.997395 CGACAAGTAATATGGATTGGAGGG 59.003 45.833 0.00 0.00 0.00 4.30
234 235 5.221641 CGACAAGTAATATGGATTGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
235 236 6.192970 ACAAGTAATATGGATTGGAGGGAG 57.807 41.667 0.00 0.00 0.00 4.30
236 237 5.672194 ACAAGTAATATGGATTGGAGGGAGT 59.328 40.000 0.00 0.00 0.00 3.85
237 238 6.849697 ACAAGTAATATGGATTGGAGGGAGTA 59.150 38.462 0.00 0.00 0.00 2.59
270 271 7.548196 TTGTTTGAGTGTCTCTACGAAAATT 57.452 32.000 0.00 0.00 0.00 1.82
324 325 3.220447 TTTTTAGCGGGAGGTGACG 57.780 52.632 0.00 0.00 42.76 4.35
325 326 0.393820 TTTTTAGCGGGAGGTGACGT 59.606 50.000 0.00 0.00 42.76 4.34
326 327 0.037975 TTTTAGCGGGAGGTGACGTC 60.038 55.000 9.11 9.11 42.76 4.34
327 328 0.896940 TTTAGCGGGAGGTGACGTCT 60.897 55.000 17.92 0.00 42.76 4.18
328 329 1.310933 TTAGCGGGAGGTGACGTCTC 61.311 60.000 17.92 13.38 42.76 3.36
329 330 4.477975 GCGGGAGGTGACGTCTCG 62.478 72.222 21.76 21.76 32.34 4.04
330 331 2.745100 CGGGAGGTGACGTCTCGA 60.745 66.667 21.58 0.00 32.34 4.04
331 332 2.876219 GGGAGGTGACGTCTCGAC 59.124 66.667 17.92 6.54 32.34 4.20
348 349 4.838486 CGGGCAGCGAGACGACTC 62.838 72.222 4.73 4.73 39.54 3.36
349 350 3.444805 GGGCAGCGAGACGACTCT 61.445 66.667 12.88 0.00 40.65 3.24
350 351 2.202544 GGCAGCGAGACGACTCTG 60.203 66.667 12.88 6.56 40.65 3.35
351 352 2.691771 GGCAGCGAGACGACTCTGA 61.692 63.158 12.88 0.00 40.65 3.27
352 353 1.513160 GCAGCGAGACGACTCTGAC 60.513 63.158 12.88 2.84 40.65 3.51
353 354 1.225881 CAGCGAGACGACTCTGACG 60.226 63.158 12.88 1.62 40.65 4.35
354 355 1.374378 AGCGAGACGACTCTGACGA 60.374 57.895 12.88 0.00 40.65 4.20
364 365 2.479275 CGACTCTGACGACTTCACTGTA 59.521 50.000 0.00 0.00 0.00 2.74
370 371 4.760204 TCTGACGACTTCACTGTAATCTCA 59.240 41.667 0.00 0.00 0.00 3.27
377 380 6.743627 CGACTTCACTGTAATCTCAGTAGTTC 59.256 42.308 0.00 0.00 45.37 3.01
389 392 5.211973 TCTCAGTAGTTCTCAATAGCCCAT 58.788 41.667 0.00 0.00 0.00 4.00
390 393 6.373759 TCTCAGTAGTTCTCAATAGCCCATA 58.626 40.000 0.00 0.00 0.00 2.74
391 394 6.265649 TCTCAGTAGTTCTCAATAGCCCATAC 59.734 42.308 0.00 0.00 0.00 2.39
392 395 5.009710 TCAGTAGTTCTCAATAGCCCATACG 59.990 44.000 0.00 0.00 0.00 3.06
397 400 1.344438 CTCAATAGCCCATACGGAGCA 59.656 52.381 0.00 0.00 32.55 4.26
398 401 1.977854 TCAATAGCCCATACGGAGCAT 59.022 47.619 0.00 0.00 32.55 3.79
433 436 8.922931 ATAATGTGCATCCATGTTACAGAATA 57.077 30.769 0.00 1.39 33.16 1.75
436 439 7.643569 TGTGCATCCATGTTACAGAATATTT 57.356 32.000 0.00 0.00 0.00 1.40
437 440 8.744568 TGTGCATCCATGTTACAGAATATTTA 57.255 30.769 0.00 0.00 0.00 1.40
492 495 8.077386 GTGTTTCTATAGAAGACTAATCCCTCG 58.923 40.741 14.63 0.00 35.21 4.63
498 501 3.447944 AGAAGACTAATCCCTCGGTTCAC 59.552 47.826 0.00 0.00 0.00 3.18
595 717 7.797121 ATTTGTGAATGGAGGGAGTATTTTT 57.203 32.000 0.00 0.00 0.00 1.94
736 875 7.432148 ACCCTATATCGAATATTGGCATACA 57.568 36.000 0.00 0.00 36.98 2.29
761 906 5.378230 AGACTATGAGCAATCCCAATCAA 57.622 39.130 0.00 0.00 0.00 2.57
908 1053 1.264288 CTCGCCAAGAACACTTCAACC 59.736 52.381 0.00 0.00 0.00 3.77
1101 1263 2.485122 GCATTTTCTGACGGCCGG 59.515 61.111 31.76 12.37 0.00 6.13
1103 1265 2.750237 ATTTTCTGACGGCCGGGC 60.750 61.111 31.76 20.04 0.00 6.13
1289 1458 4.639078 TTGGTCATTCTGATTCCTGTCA 57.361 40.909 0.00 0.00 0.00 3.58
1362 1531 6.071051 TCAGGCATAAAAAGGTTATTGTTCCC 60.071 38.462 0.00 0.00 0.00 3.97
1401 1570 2.872732 AGCTGATCCCTAATTGCCATG 58.127 47.619 0.00 0.00 0.00 3.66
1440 1609 1.678724 CAATTGGTTGGGGCCTTGG 59.321 57.895 0.84 0.00 0.00 3.61
1441 1610 1.538629 AATTGGTTGGGGCCTTGGG 60.539 57.895 0.84 0.00 0.00 4.12
1442 1611 3.561017 ATTGGTTGGGGCCTTGGGG 62.561 63.158 0.84 0.00 0.00 4.96
1459 1628 2.027625 GGGCGGTTGAGTCGTTGAG 61.028 63.158 0.00 0.00 0.00 3.02
1566 1744 8.704668 TCCTTGCATGTAGAAGAGTATATTTGA 58.295 33.333 0.00 0.00 0.00 2.69
1567 1745 9.499479 CCTTGCATGTAGAAGAGTATATTTGAT 57.501 33.333 0.00 0.00 0.00 2.57
1778 1968 4.681483 GCAGTGATTTTGCTACCAAACTTC 59.319 41.667 0.00 0.00 40.45 3.01
1871 2131 0.373716 GTGGCTATTCGGTTGCTTCG 59.626 55.000 0.00 0.00 0.00 3.79
1901 2161 6.267471 TGCTTGAATTAGATTTCACCCTTTGT 59.733 34.615 0.00 0.00 35.42 2.83
1969 2229 1.812571 GTTTTTAGCTGCTGCCTGCTA 59.187 47.619 13.43 16.71 43.38 3.49
1983 2243 2.012673 CCTGCTAGAACATGCAAGTCC 58.987 52.381 0.00 0.00 38.81 3.85
2006 2266 5.282510 CGATCCCTGATTAGAAGTACACAC 58.717 45.833 0.00 0.00 0.00 3.82
2061 2321 3.691118 TGCAATTTCTCATCTACCTGCAC 59.309 43.478 0.00 0.00 33.87 4.57
2143 2407 3.515901 ACTGAAGGGTGGTACAAGAGATC 59.484 47.826 0.00 0.00 44.16 2.75
2223 2487 8.067751 ACAGATGTGTTTCTCTAATGCTAGTA 57.932 34.615 0.00 0.00 30.30 1.82
2325 2589 0.035820 GGCCCATAAAGTGTCGGTGA 60.036 55.000 0.00 0.00 0.00 4.02
2326 2590 1.408266 GGCCCATAAAGTGTCGGTGAT 60.408 52.381 0.00 0.00 0.00 3.06
2327 2591 2.158871 GGCCCATAAAGTGTCGGTGATA 60.159 50.000 0.00 0.00 0.00 2.15
2328 2592 3.131396 GCCCATAAAGTGTCGGTGATAG 58.869 50.000 0.00 0.00 0.00 2.08
2329 2593 3.431766 GCCCATAAAGTGTCGGTGATAGT 60.432 47.826 0.00 0.00 0.00 2.12
2330 2594 4.202182 GCCCATAAAGTGTCGGTGATAGTA 60.202 45.833 0.00 0.00 0.00 1.82
2546 2811 2.168496 CAGTTCTGGACGAGTTAGGGA 58.832 52.381 0.00 0.00 0.00 4.20
2564 2829 7.560626 AGTTAGGGAAGTAGAGTATTCGACAAT 59.439 37.037 1.58 0.00 32.05 2.71
2583 2848 1.006086 TAGATGTGAATGCGCCAACG 58.994 50.000 4.18 0.00 44.07 4.10
2757 3023 0.263468 TGGGTGGGTCCAGATCGATA 59.737 55.000 0.00 0.00 38.11 2.92
2797 3063 2.746697 TGTTCGCAGAGGAGGAAGT 58.253 52.632 0.00 0.00 38.43 3.01
2798 3064 0.318441 TGTTCGCAGAGGAGGAAGTG 59.682 55.000 0.00 0.00 38.43 3.16
2799 3065 1.016653 GTTCGCAGAGGAGGAAGTGC 61.017 60.000 0.00 0.00 38.43 4.40
2951 3217 6.212791 ACAGGTTTGTTATCTCTAGCCTTGTA 59.787 38.462 0.00 0.00 32.28 2.41
2988 3255 5.821516 TTTCTGTTAAAAAGAGCAACGGA 57.178 34.783 0.00 0.00 36.13 4.69
3015 3282 9.278978 TGTTATCTTTCATGTACTGCAACTTAA 57.721 29.630 0.00 0.00 0.00 1.85
3267 3539 6.992123 TCGTTAGAAAATCATCTGCATGGTAT 59.008 34.615 0.00 0.00 0.00 2.73
3331 3603 4.771577 TCAGTGGTTGATTGCAATTGGTAT 59.228 37.500 14.33 0.00 36.22 2.73
3332 3604 5.245751 TCAGTGGTTGATTGCAATTGGTATT 59.754 36.000 14.33 0.00 36.22 1.89
3367 3639 9.670442 TTACCAGTATCTTGATATTTACTCCCT 57.330 33.333 0.00 0.00 0.00 4.20
3368 3640 8.196378 ACCAGTATCTTGATATTTACTCCCTC 57.804 38.462 0.00 0.00 0.00 4.30
3369 3641 7.235812 ACCAGTATCTTGATATTTACTCCCTCC 59.764 40.741 0.00 0.00 0.00 4.30
3370 3642 7.316640 CAGTATCTTGATATTTACTCCCTCCG 58.683 42.308 0.00 0.00 0.00 4.63
3371 3643 7.011382 AGTATCTTGATATTTACTCCCTCCGT 58.989 38.462 0.00 0.00 0.00 4.69
3372 3644 6.749036 ATCTTGATATTTACTCCCTCCGTT 57.251 37.500 0.00 0.00 0.00 4.44
3373 3645 6.158023 TCTTGATATTTACTCCCTCCGTTC 57.842 41.667 0.00 0.00 0.00 3.95
3374 3646 4.950205 TGATATTTACTCCCTCCGTTCC 57.050 45.455 0.00 0.00 0.00 3.62
3375 3647 3.319972 TGATATTTACTCCCTCCGTTCCG 59.680 47.826 0.00 0.00 0.00 4.30
3376 3648 1.856629 ATTTACTCCCTCCGTTCCGA 58.143 50.000 0.00 0.00 0.00 4.55
3377 3649 1.856629 TTTACTCCCTCCGTTCCGAT 58.143 50.000 0.00 0.00 0.00 4.18
3378 3650 1.856629 TTACTCCCTCCGTTCCGATT 58.143 50.000 0.00 0.00 0.00 3.34
3379 3651 1.856629 TACTCCCTCCGTTCCGATTT 58.143 50.000 0.00 0.00 0.00 2.17
3380 3652 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
3381 3653 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
3382 3654 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
3383 3655 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
3385 3657 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
3386 3658 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
3387 3659 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
3388 3660 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
3389 3661 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
3390 3662 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
3391 3663 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
3392 3664 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
3393 3665 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
3394 3666 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
3395 3667 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
3396 3668 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
3397 3669 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
3398 3670 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
3399 3671 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
3400 3672 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
3401 3673 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
3402 3674 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
3403 3675 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
3404 3676 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
3405 3677 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
3406 3678 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
3407 3679 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
3408 3680 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
3421 3693 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
3422 3694 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
3423 3695 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
3424 3696 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
3425 3697 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
3426 3698 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
3427 3699 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
3428 3700 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
3429 3701 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
3430 3702 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
3431 3703 5.531634 ACTAAAACCACGACGAGTAAATCA 58.468 37.500 0.00 0.00 0.00 2.57
3432 3704 4.985044 AAAACCACGACGAGTAAATCAG 57.015 40.909 0.00 0.00 0.00 2.90
3433 3705 3.928727 AACCACGACGAGTAAATCAGA 57.071 42.857 0.00 0.00 0.00 3.27
3434 3706 3.928727 ACCACGACGAGTAAATCAGAA 57.071 42.857 0.00 0.00 0.00 3.02
3435 3707 3.572584 ACCACGACGAGTAAATCAGAAC 58.427 45.455 0.00 0.00 0.00 3.01
3436 3708 2.592897 CCACGACGAGTAAATCAGAACG 59.407 50.000 0.00 0.00 0.00 3.95
3437 3709 2.592897 CACGACGAGTAAATCAGAACGG 59.407 50.000 0.00 0.00 0.00 4.44
3438 3710 2.485426 ACGACGAGTAAATCAGAACGGA 59.515 45.455 0.00 0.00 0.00 4.69
3439 3711 3.099362 CGACGAGTAAATCAGAACGGAG 58.901 50.000 0.00 0.00 0.00 4.63
3440 3712 3.436496 GACGAGTAAATCAGAACGGAGG 58.564 50.000 0.00 0.00 0.00 4.30
3441 3713 2.165845 ACGAGTAAATCAGAACGGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
3442 3714 2.426024 CGAGTAAATCAGAACGGAGGGA 59.574 50.000 0.00 0.00 0.00 4.20
3443 3715 3.489398 CGAGTAAATCAGAACGGAGGGAG 60.489 52.174 0.00 0.00 0.00 4.30
3444 3716 3.442076 AGTAAATCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
3445 3717 4.607239 AGTAAATCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
3473 3745 4.797349 GCTTGAGCTTCATAAAGAACATGC 59.203 41.667 0.00 0.00 38.21 4.06
3518 3790 7.996066 ACATGTATAGGTGTGGTAAATATGCAA 59.004 33.333 0.00 0.00 0.00 4.08
3572 3844 8.870116 TCACATGGCTAACATATACAACTCTAT 58.130 33.333 0.00 0.00 37.84 1.98
3604 3876 7.816995 CAGATAGTGGTCCTATTATTTCAGCTC 59.183 40.741 0.00 0.00 36.47 4.09
3647 3919 6.455360 AACAATTTCAGCTTCAGTTTCAGA 57.545 33.333 0.00 0.00 0.00 3.27
3656 3928 6.974622 TCAGCTTCAGTTTCAGAATTTTCAAC 59.025 34.615 0.00 0.00 0.00 3.18
3720 3992 4.395231 CCATCCGAAACCTTTTCTAGAACC 59.605 45.833 4.18 0.00 0.00 3.62
3763 4035 4.177537 TGTTCATCCCCTCAACAAGAAA 57.822 40.909 0.00 0.00 0.00 2.52
3804 4076 7.759886 TCTTCTTTTGTACTAACTCATGGATCG 59.240 37.037 0.00 0.00 0.00 3.69
4214 4486 1.094785 ATCTTGTTGCATGGGTACGC 58.905 50.000 2.35 2.35 0.00 4.42
4262 4534 4.020218 TCAGTTTTGGTGTAGAGGAGATGG 60.020 45.833 0.00 0.00 0.00 3.51
4452 4724 3.311110 AGGAGAAAGCGGCGTCCA 61.311 61.111 14.79 0.00 0.00 4.02
4506 4778 7.011857 CACTTTCTTATCTAGCTTCCCAACATC 59.988 40.741 0.00 0.00 0.00 3.06
4719 4991 0.110104 CTCTGGGAGGAATGATGGCC 59.890 60.000 0.00 0.00 0.00 5.36
4764 5036 1.765904 TGCACAGTGGGAAGTCTTACA 59.234 47.619 0.00 0.00 0.00 2.41
4819 5091 0.389948 GTCGATGCCCACGAGAAACT 60.390 55.000 0.00 0.00 40.37 2.66
4868 5140 2.289569 GCAGGTTTGAATTTGATGGCCA 60.290 45.455 8.56 8.56 0.00 5.36
4869 5141 3.806507 GCAGGTTTGAATTTGATGGCCAA 60.807 43.478 10.96 0.00 0.00 4.52
4945 5217 0.389166 GACGGGTGAGTGCTTCTCTG 60.389 60.000 9.94 2.29 43.13 3.35
4946 5218 1.115930 ACGGGTGAGTGCTTCTCTGT 61.116 55.000 9.94 2.77 43.13 3.41
4947 5219 0.668706 CGGGTGAGTGCTTCTCTGTG 60.669 60.000 9.94 0.00 43.13 3.66
4948 5220 0.321122 GGGTGAGTGCTTCTCTGTGG 60.321 60.000 9.94 0.00 43.13 4.17
4950 5222 1.202698 GGTGAGTGCTTCTCTGTGGTT 60.203 52.381 9.94 0.00 43.13 3.67
4998 5276 0.184933 TTGTGTTTCCCCACTCCTGG 59.815 55.000 0.00 0.00 36.30 4.45
5072 5350 2.286833 CACATACCGTATTGCGAAAGGG 59.713 50.000 0.00 0.00 44.77 3.95
5174 5452 6.055588 AGATCACCCACTTTGTATTTATCGG 58.944 40.000 0.00 0.00 0.00 4.18
5250 5529 8.706492 TCGAAAAAGAGTTGTCTTGTAAGTAA 57.294 30.769 0.00 0.00 42.59 2.24
5257 5536 7.963532 AGAGTTGTCTTGTAAGTAAATCCTGA 58.036 34.615 0.00 0.00 0.00 3.86
5507 5786 3.390967 TCAAGTGTGGGTCAGATTTCAGA 59.609 43.478 0.00 0.00 0.00 3.27
5584 5898 3.627577 TCTGCTTTATTTCCCAGATTCGC 59.372 43.478 0.00 0.00 30.00 4.70
5610 5924 6.580788 ACATCTGTATAGATATCTGCATGGC 58.419 40.000 15.79 1.25 41.71 4.40
5830 6146 6.701145 TCTGCACTAAATTGGTGTTAACAA 57.299 33.333 10.51 0.00 37.07 2.83
5898 6214 1.678627 CTCGACAATGGAGACCTCGAT 59.321 52.381 0.00 0.00 33.20 3.59
5900 6216 1.536922 CGACAATGGAGACCTCGATGG 60.537 57.143 0.00 0.00 42.93 3.51
5928 6244 2.718563 TGTCATGATGATGTTGCTGCT 58.281 42.857 0.00 0.00 0.00 4.24
5934 6250 2.943033 TGATGATGTTGCTGCTGAGATG 59.057 45.455 0.00 0.00 0.00 2.90
6066 6382 5.540337 TCAATATGGAGAGGCACCTAGTAAG 59.460 44.000 0.00 0.00 0.00 2.34
6072 6388 4.387598 GAGAGGCACCTAGTAAGACGATA 58.612 47.826 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.502211 CCATCTTACGAAAGCAACCTTGT 59.498 43.478 0.00 0.00 32.36 3.16
8 9 3.600388 CTCCATCTTACGAAAGCAACCT 58.400 45.455 0.00 0.00 32.36 3.50
16 17 0.178068 GCTGGGCTCCATCTTACGAA 59.822 55.000 0.00 0.00 30.82 3.85
17 18 1.686325 GGCTGGGCTCCATCTTACGA 61.686 60.000 0.00 0.00 30.82 3.43
18 19 1.227674 GGCTGGGCTCCATCTTACG 60.228 63.158 0.00 0.00 30.82 3.18
27 28 4.864334 CATCCACCGGCTGGGCTC 62.864 72.222 18.00 0.00 41.06 4.70
38 39 4.815846 ACAATGTTTTCCTTTTGCATCCAC 59.184 37.500 0.00 0.00 0.00 4.02
39 40 5.033589 ACAATGTTTTCCTTTTGCATCCA 57.966 34.783 0.00 0.00 0.00 3.41
99 100 3.412386 ACCCTTCCGAAATCACTCTTTG 58.588 45.455 0.00 0.00 0.00 2.77
113 114 5.184479 GGGAGTACATAAAAACAACCCTTCC 59.816 44.000 0.00 0.00 34.12 3.46
114 115 6.008331 AGGGAGTACATAAAAACAACCCTTC 58.992 40.000 0.00 0.00 39.85 3.46
122 123 4.633126 GGAACGGAGGGAGTACATAAAAAC 59.367 45.833 0.00 0.00 0.00 2.43
127 128 2.832643 TGGAACGGAGGGAGTACATA 57.167 50.000 0.00 0.00 0.00 2.29
128 129 2.176247 ATGGAACGGAGGGAGTACAT 57.824 50.000 0.00 0.00 0.00 2.29
130 131 4.831710 AGTAATATGGAACGGAGGGAGTAC 59.168 45.833 0.00 0.00 0.00 2.73
131 132 5.070823 AGTAATATGGAACGGAGGGAGTA 57.929 43.478 0.00 0.00 0.00 2.59
132 133 3.924922 AGTAATATGGAACGGAGGGAGT 58.075 45.455 0.00 0.00 0.00 3.85
133 134 4.957684 AAGTAATATGGAACGGAGGGAG 57.042 45.455 0.00 0.00 0.00 4.30
134 135 6.014840 GTGATAAGTAATATGGAACGGAGGGA 60.015 42.308 0.00 0.00 0.00 4.20
135 136 6.014499 AGTGATAAGTAATATGGAACGGAGGG 60.014 42.308 0.00 0.00 0.00 4.30
136 137 6.994221 AGTGATAAGTAATATGGAACGGAGG 58.006 40.000 0.00 0.00 0.00 4.30
137 138 7.658261 TGAGTGATAAGTAATATGGAACGGAG 58.342 38.462 0.00 0.00 0.00 4.63
138 139 7.591421 TGAGTGATAAGTAATATGGAACGGA 57.409 36.000 0.00 0.00 0.00 4.69
139 140 8.548721 GTTTGAGTGATAAGTAATATGGAACGG 58.451 37.037 0.00 0.00 0.00 4.44
140 141 8.266682 CGTTTGAGTGATAAGTAATATGGAACG 58.733 37.037 0.00 0.00 0.00 3.95
141 142 8.548721 CCGTTTGAGTGATAAGTAATATGGAAC 58.451 37.037 0.00 0.00 0.00 3.62
142 143 8.479689 TCCGTTTGAGTGATAAGTAATATGGAA 58.520 33.333 0.00 0.00 0.00 3.53
143 144 8.014070 TCCGTTTGAGTGATAAGTAATATGGA 57.986 34.615 0.00 0.00 0.00 3.41
144 145 8.712363 CATCCGTTTGAGTGATAAGTAATATGG 58.288 37.037 0.00 0.00 0.00 2.74
145 146 9.261180 ACATCCGTTTGAGTGATAAGTAATATG 57.739 33.333 0.00 0.00 0.00 1.78
148 149 9.477484 GATACATCCGTTTGAGTGATAAGTAAT 57.523 33.333 0.00 0.00 0.00 1.89
149 150 7.924412 GGATACATCCGTTTGAGTGATAAGTAA 59.076 37.037 0.00 0.00 37.19 2.24
150 151 7.431249 GGATACATCCGTTTGAGTGATAAGTA 58.569 38.462 0.00 0.00 37.19 2.24
151 152 6.281405 GGATACATCCGTTTGAGTGATAAGT 58.719 40.000 0.00 0.00 37.19 2.24
152 153 6.771188 GGATACATCCGTTTGAGTGATAAG 57.229 41.667 0.00 0.00 37.19 1.73
170 171 5.886960 AGACAAATTTCAGTGCTGGATAC 57.113 39.130 0.00 0.00 0.00 2.24
171 172 6.946340 TCTAGACAAATTTCAGTGCTGGATA 58.054 36.000 0.00 0.00 0.00 2.59
172 173 5.809001 TCTAGACAAATTTCAGTGCTGGAT 58.191 37.500 0.00 0.00 0.00 3.41
173 174 5.227569 TCTAGACAAATTTCAGTGCTGGA 57.772 39.130 0.00 0.00 0.00 3.86
174 175 5.675575 GCATCTAGACAAATTTCAGTGCTGG 60.676 44.000 0.00 0.00 0.00 4.85
175 176 5.106436 TGCATCTAGACAAATTTCAGTGCTG 60.106 40.000 0.00 0.00 0.00 4.41
176 177 5.005740 TGCATCTAGACAAATTTCAGTGCT 58.994 37.500 0.00 0.00 0.00 4.40
177 178 5.300969 TGCATCTAGACAAATTTCAGTGC 57.699 39.130 0.00 0.00 0.00 4.40
178 179 7.317842 AGATGCATCTAGACAAATTTCAGTG 57.682 36.000 27.73 0.00 34.85 3.66
179 180 9.624373 AATAGATGCATCTAGACAAATTTCAGT 57.376 29.630 33.44 15.02 42.20 3.41
185 186 8.715998 CGCTTAAATAGATGCATCTAGACAAAT 58.284 33.333 33.44 19.07 42.20 2.32
186 187 7.926018 TCGCTTAAATAGATGCATCTAGACAAA 59.074 33.333 33.44 23.90 42.20 2.83
187 188 7.382488 GTCGCTTAAATAGATGCATCTAGACAA 59.618 37.037 33.44 25.01 42.20 3.18
188 189 6.863645 GTCGCTTAAATAGATGCATCTAGACA 59.136 38.462 33.44 20.96 42.20 3.41
189 190 6.863645 TGTCGCTTAAATAGATGCATCTAGAC 59.136 38.462 33.44 29.84 42.20 2.59
190 191 6.981722 TGTCGCTTAAATAGATGCATCTAGA 58.018 36.000 33.44 22.93 42.20 2.43
191 192 7.383572 ACTTGTCGCTTAAATAGATGCATCTAG 59.616 37.037 33.44 24.82 42.20 2.43
192 193 7.210174 ACTTGTCGCTTAAATAGATGCATCTA 58.790 34.615 32.86 32.86 43.00 1.98
193 194 6.051717 ACTTGTCGCTTAAATAGATGCATCT 58.948 36.000 30.85 30.85 40.86 2.90
194 195 6.292389 ACTTGTCGCTTAAATAGATGCATC 57.708 37.500 19.37 19.37 0.00 3.91
195 196 7.786178 TTACTTGTCGCTTAAATAGATGCAT 57.214 32.000 0.00 0.00 0.00 3.96
196 197 7.786178 ATTACTTGTCGCTTAAATAGATGCA 57.214 32.000 0.00 0.00 0.00 3.96
197 198 9.746711 CATATTACTTGTCGCTTAAATAGATGC 57.253 33.333 0.00 0.00 0.00 3.91
203 204 8.567948 CCAATCCATATTACTTGTCGCTTAAAT 58.432 33.333 0.00 0.00 0.00 1.40
204 205 7.771361 TCCAATCCATATTACTTGTCGCTTAAA 59.229 33.333 0.00 0.00 0.00 1.52
205 206 7.276658 TCCAATCCATATTACTTGTCGCTTAA 58.723 34.615 0.00 0.00 0.00 1.85
206 207 6.822442 TCCAATCCATATTACTTGTCGCTTA 58.178 36.000 0.00 0.00 0.00 3.09
207 208 5.680619 TCCAATCCATATTACTTGTCGCTT 58.319 37.500 0.00 0.00 0.00 4.68
208 209 5.290493 TCCAATCCATATTACTTGTCGCT 57.710 39.130 0.00 0.00 0.00 4.93
209 210 4.452455 CCTCCAATCCATATTACTTGTCGC 59.548 45.833 0.00 0.00 0.00 5.19
210 211 4.997395 CCCTCCAATCCATATTACTTGTCG 59.003 45.833 0.00 0.00 0.00 4.35
211 212 6.183361 ACTCCCTCCAATCCATATTACTTGTC 60.183 42.308 0.00 0.00 0.00 3.18
212 213 5.672194 ACTCCCTCCAATCCATATTACTTGT 59.328 40.000 0.00 0.00 0.00 3.16
213 214 6.192970 ACTCCCTCCAATCCATATTACTTG 57.807 41.667 0.00 0.00 0.00 3.16
214 215 7.947782 TTACTCCCTCCAATCCATATTACTT 57.052 36.000 0.00 0.00 0.00 2.24
215 216 7.947782 TTTACTCCCTCCAATCCATATTACT 57.052 36.000 0.00 0.00 0.00 2.24
247 248 8.827177 ATAATTTTCGTAGAGACACTCAAACA 57.173 30.769 0.00 0.00 38.43 2.83
306 307 0.393820 ACGTCACCTCCCGCTAAAAA 59.606 50.000 0.00 0.00 0.00 1.94
307 308 0.037975 GACGTCACCTCCCGCTAAAA 60.038 55.000 11.55 0.00 0.00 1.52
308 309 0.896940 AGACGTCACCTCCCGCTAAA 60.897 55.000 19.50 0.00 0.00 1.85
309 310 1.303888 AGACGTCACCTCCCGCTAA 60.304 57.895 19.50 0.00 0.00 3.09
310 311 1.748122 GAGACGTCACCTCCCGCTA 60.748 63.158 19.50 0.00 0.00 4.26
311 312 3.063084 GAGACGTCACCTCCCGCT 61.063 66.667 19.50 0.00 0.00 5.52
312 313 4.477975 CGAGACGTCACCTCCCGC 62.478 72.222 19.50 0.00 0.00 6.13
313 314 2.745100 TCGAGACGTCACCTCCCG 60.745 66.667 19.50 10.63 0.00 5.14
314 315 2.876219 GTCGAGACGTCACCTCCC 59.124 66.667 19.50 0.00 0.00 4.30
331 332 4.838486 GAGTCGTCTCGCTGCCCG 62.838 72.222 0.00 0.00 38.61 6.13
332 333 3.444805 AGAGTCGTCTCGCTGCCC 61.445 66.667 4.01 0.00 44.65 5.36
333 334 2.202544 CAGAGTCGTCTCGCTGCC 60.203 66.667 4.01 0.00 44.65 4.85
334 335 1.513160 GTCAGAGTCGTCTCGCTGC 60.513 63.158 4.01 0.00 44.65 5.25
335 336 1.225881 CGTCAGAGTCGTCTCGCTG 60.226 63.158 4.01 3.75 44.65 5.18
336 337 1.374378 TCGTCAGAGTCGTCTCGCT 60.374 57.895 4.01 0.00 44.65 4.93
337 338 1.225799 GTCGTCAGAGTCGTCTCGC 60.226 63.158 4.01 0.00 44.65 5.03
338 339 0.791422 AAGTCGTCAGAGTCGTCTCG 59.209 55.000 4.01 0.39 44.65 4.04
339 340 1.799403 TGAAGTCGTCAGAGTCGTCTC 59.201 52.381 1.04 1.04 40.70 3.36
340 341 1.532007 GTGAAGTCGTCAGAGTCGTCT 59.468 52.381 0.00 0.00 36.74 4.18
341 342 1.532007 AGTGAAGTCGTCAGAGTCGTC 59.468 52.381 0.00 0.00 36.74 4.20
342 343 1.264557 CAGTGAAGTCGTCAGAGTCGT 59.735 52.381 0.00 0.00 36.74 4.34
343 344 1.264557 ACAGTGAAGTCGTCAGAGTCG 59.735 52.381 0.00 0.00 36.74 4.18
344 345 4.485024 TTACAGTGAAGTCGTCAGAGTC 57.515 45.455 0.00 0.00 36.74 3.36
345 346 4.762765 AGATTACAGTGAAGTCGTCAGAGT 59.237 41.667 0.00 0.00 36.74 3.24
346 347 5.106515 TGAGATTACAGTGAAGTCGTCAGAG 60.107 44.000 0.00 0.00 36.74 3.35
347 348 4.760204 TGAGATTACAGTGAAGTCGTCAGA 59.240 41.667 0.00 0.00 36.74 3.27
348 349 5.048153 TGAGATTACAGTGAAGTCGTCAG 57.952 43.478 0.00 0.00 36.74 3.51
349 350 5.048153 CTGAGATTACAGTGAAGTCGTCA 57.952 43.478 0.00 0.00 33.73 4.35
364 365 5.663106 TGGGCTATTGAGAACTACTGAGATT 59.337 40.000 0.00 0.00 0.00 2.40
370 371 4.281182 CCGTATGGGCTATTGAGAACTACT 59.719 45.833 0.00 0.00 0.00 2.57
377 380 1.344438 TGCTCCGTATGGGCTATTGAG 59.656 52.381 13.51 0.00 33.90 3.02
389 392 9.150348 CACATTATCATAAATACATGCTCCGTA 57.850 33.333 0.00 0.00 0.00 4.02
390 393 7.361201 GCACATTATCATAAATACATGCTCCGT 60.361 37.037 0.00 0.00 0.00 4.69
391 394 6.963242 GCACATTATCATAAATACATGCTCCG 59.037 38.462 0.00 0.00 0.00 4.63
392 395 7.819644 TGCACATTATCATAAATACATGCTCC 58.180 34.615 0.00 0.00 0.00 4.70
398 401 9.299465 ACATGGATGCACATTATCATAAATACA 57.701 29.630 0.00 0.00 0.00 2.29
485 488 6.494666 TCTTATATTTGTGAACCGAGGGAT 57.505 37.500 0.00 0.00 0.00 3.85
629 753 9.143155 TGAATCCTTCAGTACAGTATATGCTAA 57.857 33.333 0.00 0.00 34.08 3.09
630 754 8.706322 TGAATCCTTCAGTACAGTATATGCTA 57.294 34.615 0.00 0.00 34.08 3.49
631 755 7.603180 TGAATCCTTCAGTACAGTATATGCT 57.397 36.000 0.00 0.00 34.08 3.79
632 756 8.662781 TTTGAATCCTTCAGTACAGTATATGC 57.337 34.615 0.00 0.00 41.38 3.14
637 761 9.871238 GTATCTTTTGAATCCTTCAGTACAGTA 57.129 33.333 0.00 0.00 41.38 2.74
645 783 5.945784 CACCTGGTATCTTTTGAATCCTTCA 59.054 40.000 0.00 0.00 38.04 3.02
683 821 0.396435 CACAAGGCTGGACAGGTACA 59.604 55.000 0.00 0.00 0.00 2.90
736 875 7.083062 TGATTGGGATTGCTCATAGTCTAAT 57.917 36.000 0.00 0.00 0.00 1.73
745 890 6.855763 AACTATTTTGATTGGGATTGCTCA 57.144 33.333 0.00 0.00 0.00 4.26
908 1053 8.365210 GCAAATTTCGTGAATATTATAATGGCG 58.635 33.333 8.28 5.66 0.00 5.69
1101 1263 1.886777 GGAAGCAGCTCATCTCGCC 60.887 63.158 0.00 0.00 0.00 5.54
1103 1265 1.591059 CGGGAAGCAGCTCATCTCG 60.591 63.158 1.96 1.96 29.61 4.04
1327 1496 5.522460 CCTTTTTATGCCTGAATCAATGCTG 59.478 40.000 6.09 0.00 0.00 4.41
1362 1531 1.405821 CTAGGCCTCTTGTACCGTCAG 59.594 57.143 9.68 0.00 0.00 3.51
1401 1570 8.495148 CAATTGGCAATTAGGTGTTCTAAAAAC 58.505 33.333 23.93 0.00 40.89 2.43
1435 1604 3.920093 GACTCAACCGCCCCCAAGG 62.920 68.421 0.00 0.00 39.47 3.61
1436 1605 2.359975 GACTCAACCGCCCCCAAG 60.360 66.667 0.00 0.00 0.00 3.61
1437 1606 4.323477 CGACTCAACCGCCCCCAA 62.323 66.667 0.00 0.00 0.00 4.12
1439 1608 4.324991 AACGACTCAACCGCCCCC 62.325 66.667 0.00 0.00 0.00 5.40
1440 1609 3.047877 CAACGACTCAACCGCCCC 61.048 66.667 0.00 0.00 0.00 5.80
1441 1610 2.027625 CTCAACGACTCAACCGCCC 61.028 63.158 0.00 0.00 0.00 6.13
1442 1611 2.027625 CCTCAACGACTCAACCGCC 61.028 63.158 0.00 0.00 0.00 6.13
1459 1628 0.254178 AGCACAGATCCATGTCCACC 59.746 55.000 0.00 0.00 0.00 4.61
1564 1742 5.183140 TGAATCATCTACCGCGATAGAATCA 59.817 40.000 15.54 13.38 34.86 2.57
1566 1744 5.644977 TGAATCATCTACCGCGATAGAAT 57.355 39.130 15.54 1.00 34.86 2.40
1567 1745 5.644977 ATGAATCATCTACCGCGATAGAA 57.355 39.130 15.54 0.00 34.86 2.10
1568 1746 5.183140 TGAATGAATCATCTACCGCGATAGA 59.817 40.000 13.72 13.72 35.67 1.98
1569 1747 5.402398 TGAATGAATCATCTACCGCGATAG 58.598 41.667 8.23 3.49 31.50 2.08
1570 1748 5.385509 TGAATGAATCATCTACCGCGATA 57.614 39.130 8.23 0.00 31.50 2.92
1708 1898 1.466167 CTCTCCCTTTCACGCAACATG 59.534 52.381 0.00 0.00 0.00 3.21
1710 1900 0.756294 TCTCTCCCTTTCACGCAACA 59.244 50.000 0.00 0.00 0.00 3.33
1778 1968 1.151668 CTTCGGTTGCTTCAGACAGG 58.848 55.000 0.00 0.00 0.00 4.00
1871 2131 6.032717 GGTGAAATCTAATTCAAGCAAGCTC 58.967 40.000 0.00 0.00 40.76 4.09
1901 2161 1.152440 ATCGGCCCCAACAACCAAA 60.152 52.632 0.00 0.00 0.00 3.28
1969 2229 1.407437 GGGATCGGACTTGCATGTTCT 60.407 52.381 6.70 0.00 0.00 3.01
1983 2243 5.282510 GTGTGTACTTCTAATCAGGGATCG 58.717 45.833 0.00 0.00 0.00 3.69
2006 2266 8.450964 ACAAGGACAAACAAATATACAAGATCG 58.549 33.333 0.00 0.00 0.00 3.69
2193 2457 8.671921 AGCATTAGAGAAACACATCTGTTATTG 58.328 33.333 0.00 0.00 39.88 1.90
2223 2487 9.046296 GTATCGTATCACCTCATGAGAAATTTT 57.954 33.333 24.62 6.24 41.91 1.82
2307 2571 2.038387 ATCACCGACACTTTATGGGC 57.962 50.000 0.00 0.00 0.00 5.36
2308 2572 4.402056 ACTATCACCGACACTTTATGGG 57.598 45.455 0.00 0.00 0.00 4.00
2366 2631 4.067896 ACGATCATGAGCATCCCATTAAC 58.932 43.478 12.15 0.00 0.00 2.01
2546 2811 9.121658 TCACATCTATTGTCGAATACTCTACTT 57.878 33.333 0.00 0.00 36.00 2.24
2564 2829 1.006086 CGTTGGCGCATTCACATCTA 58.994 50.000 10.83 0.00 0.00 1.98
2583 2848 3.690460 ACATTTGATGACCTGAAGACCC 58.310 45.455 0.00 0.00 0.00 4.46
2757 3023 4.926238 CAGAGCTTGAACTACGAGAATTGT 59.074 41.667 0.00 0.00 36.17 2.71
2799 3065 4.738998 TTGCCGGGCCATGTGGAG 62.739 66.667 17.97 0.00 37.39 3.86
2988 3255 7.928307 AGTTGCAGTACATGAAAGATAACAT 57.072 32.000 0.00 0.00 0.00 2.71
3267 3539 4.701651 CAGGAAACCATACAATGAGAAGCA 59.298 41.667 0.00 0.00 0.00 3.91
3375 3647 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
3376 3648 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
3377 3649 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
3378 3650 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
3379 3651 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
3380 3652 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
3381 3653 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
3382 3654 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
3383 3655 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
3384 3656 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
3397 3669 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
3398 3670 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
3399 3671 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
3400 3672 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
3401 3673 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
3402 3674 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
3403 3675 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
3404 3676 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
3405 3677 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
3406 3678 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
3407 3679 5.984926 TGATTTACTCGTCGTGGTTTTAGTT 59.015 36.000 0.00 0.00 0.00 2.24
3408 3680 5.531634 TGATTTACTCGTCGTGGTTTTAGT 58.468 37.500 0.00 0.00 0.00 2.24
3409 3681 5.860182 TCTGATTTACTCGTCGTGGTTTTAG 59.140 40.000 0.00 0.00 0.00 1.85
3410 3682 5.771469 TCTGATTTACTCGTCGTGGTTTTA 58.229 37.500 0.00 0.00 0.00 1.52
3411 3683 4.624015 TCTGATTTACTCGTCGTGGTTTT 58.376 39.130 0.00 0.00 0.00 2.43
3412 3684 4.247267 TCTGATTTACTCGTCGTGGTTT 57.753 40.909 0.00 0.00 0.00 3.27
3413 3685 3.928727 TCTGATTTACTCGTCGTGGTT 57.071 42.857 0.00 0.00 0.00 3.67
3414 3686 3.572584 GTTCTGATTTACTCGTCGTGGT 58.427 45.455 0.00 0.00 0.00 4.16
3415 3687 2.592897 CGTTCTGATTTACTCGTCGTGG 59.407 50.000 0.00 0.00 0.00 4.94
3416 3688 2.592897 CCGTTCTGATTTACTCGTCGTG 59.407 50.000 0.00 0.00 0.00 4.35
3417 3689 2.485426 TCCGTTCTGATTTACTCGTCGT 59.515 45.455 0.00 0.00 0.00 4.34
3418 3690 3.099362 CTCCGTTCTGATTTACTCGTCG 58.901 50.000 0.00 0.00 0.00 5.12
3419 3691 3.436496 CCTCCGTTCTGATTTACTCGTC 58.564 50.000 0.00 0.00 0.00 4.20
3420 3692 2.165845 CCCTCCGTTCTGATTTACTCGT 59.834 50.000 0.00 0.00 0.00 4.18
3421 3693 2.426024 TCCCTCCGTTCTGATTTACTCG 59.574 50.000 0.00 0.00 0.00 4.18
3422 3694 3.447944 ACTCCCTCCGTTCTGATTTACTC 59.552 47.826 0.00 0.00 0.00 2.59
3423 3695 3.442076 ACTCCCTCCGTTCTGATTTACT 58.558 45.455 0.00 0.00 0.00 2.24
3424 3696 3.889520 ACTCCCTCCGTTCTGATTTAC 57.110 47.619 0.00 0.00 0.00 2.01
3425 3697 4.607239 ACTACTCCCTCCGTTCTGATTTA 58.393 43.478 0.00 0.00 0.00 1.40
3426 3698 3.442076 ACTACTCCCTCCGTTCTGATTT 58.558 45.455 0.00 0.00 0.00 2.17
3427 3699 3.103080 ACTACTCCCTCCGTTCTGATT 57.897 47.619 0.00 0.00 0.00 2.57
3428 3700 2.761208 CAACTACTCCCTCCGTTCTGAT 59.239 50.000 0.00 0.00 0.00 2.90
3429 3701 2.168496 CAACTACTCCCTCCGTTCTGA 58.832 52.381 0.00 0.00 0.00 3.27
3430 3702 1.204941 CCAACTACTCCCTCCGTTCTG 59.795 57.143 0.00 0.00 0.00 3.02
3431 3703 1.558233 CCAACTACTCCCTCCGTTCT 58.442 55.000 0.00 0.00 0.00 3.01
3432 3704 0.108281 GCCAACTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 0.00 3.95
3433 3705 0.544595 AGCCAACTACTCCCTCCGTT 60.545 55.000 0.00 0.00 0.00 4.44
3434 3706 0.544595 AAGCCAACTACTCCCTCCGT 60.545 55.000 0.00 0.00 0.00 4.69
3435 3707 0.108138 CAAGCCAACTACTCCCTCCG 60.108 60.000 0.00 0.00 0.00 4.63
3436 3708 1.208293 CTCAAGCCAACTACTCCCTCC 59.792 57.143 0.00 0.00 0.00 4.30
3437 3709 1.406205 GCTCAAGCCAACTACTCCCTC 60.406 57.143 0.00 0.00 34.31 4.30
3438 3710 0.615850 GCTCAAGCCAACTACTCCCT 59.384 55.000 0.00 0.00 34.31 4.20
3439 3711 0.615850 AGCTCAAGCCAACTACTCCC 59.384 55.000 0.00 0.00 43.38 4.30
3440 3712 2.289694 TGAAGCTCAAGCCAACTACTCC 60.290 50.000 0.00 0.00 43.38 3.85
3441 3713 3.045601 TGAAGCTCAAGCCAACTACTC 57.954 47.619 0.00 0.00 43.38 2.59
3442 3714 3.710209 ATGAAGCTCAAGCCAACTACT 57.290 42.857 0.00 0.00 43.38 2.57
3443 3715 5.643777 TCTTTATGAAGCTCAAGCCAACTAC 59.356 40.000 0.00 0.00 43.38 2.73
3444 3716 5.804639 TCTTTATGAAGCTCAAGCCAACTA 58.195 37.500 0.00 0.00 43.38 2.24
3445 3717 4.655963 TCTTTATGAAGCTCAAGCCAACT 58.344 39.130 0.00 0.00 43.38 3.16
3473 3745 7.369803 ACATGTATAGAAGTTGTTGCTCTTG 57.630 36.000 0.00 0.00 0.00 3.02
3523 3795 9.490379 GTGATATCCTCATCGTATAAGGTTTTT 57.510 33.333 0.00 0.00 35.97 1.94
3524 3796 8.647796 TGTGATATCCTCATCGTATAAGGTTTT 58.352 33.333 0.00 0.00 35.97 2.43
3525 3797 8.190326 TGTGATATCCTCATCGTATAAGGTTT 57.810 34.615 0.00 0.00 35.97 3.27
3526 3798 7.776618 TGTGATATCCTCATCGTATAAGGTT 57.223 36.000 0.00 0.00 35.97 3.50
3527 3799 7.147828 CCATGTGATATCCTCATCGTATAAGGT 60.148 40.741 0.00 0.00 35.97 3.50
3536 3808 5.798132 TGTTAGCCATGTGATATCCTCATC 58.202 41.667 0.00 0.00 35.97 2.92
3540 3812 8.379428 TGTATATGTTAGCCATGTGATATCCT 57.621 34.615 0.00 0.00 34.86 3.24
3614 3886 6.258287 TGAAGCTGAAATTGTTTGTGATTTGG 59.742 34.615 0.00 0.00 0.00 3.28
3694 3966 1.161843 GAAAAGGTTTCGGATGGCGA 58.838 50.000 0.00 0.00 0.00 5.54
3804 4076 2.183046 GCGGTCTGTCCAGAGAGC 59.817 66.667 0.00 3.01 38.27 4.09
3836 4108 0.903942 TTGCATTCCAATCAAGGGGC 59.096 50.000 0.00 0.00 0.00 5.80
4262 4534 9.565213 CACCTATGAAGAAATGAGAAAAATGTC 57.435 33.333 0.00 0.00 0.00 3.06
4506 4778 3.557595 GTCCTACAGCTTTTCGGATCATG 59.442 47.826 0.00 0.00 0.00 3.07
4764 5036 2.954989 TGCGATCTCTATCAGCTTCACT 59.045 45.455 0.00 0.00 34.69 3.41
4819 5091 1.418097 TTTGCCAGGGTCTGCTCTCA 61.418 55.000 0.00 0.00 0.00 3.27
4868 5140 1.153353 CAACACTGCCCGTTCGTATT 58.847 50.000 0.00 0.00 0.00 1.89
4869 5141 1.296056 GCAACACTGCCCGTTCGTAT 61.296 55.000 0.00 0.00 43.26 3.06
4947 5219 3.823304 AGAGAAAAATGCTGGTCTGAACC 59.177 43.478 0.00 0.00 46.66 3.62
4948 5220 4.516698 TGAGAGAAAAATGCTGGTCTGAAC 59.483 41.667 0.00 0.00 0.00 3.18
4950 5222 4.321718 CTGAGAGAAAAATGCTGGTCTGA 58.678 43.478 0.00 0.00 0.00 3.27
4961 5239 2.233271 CAAGCCTGGCTGAGAGAAAAA 58.767 47.619 24.16 0.00 39.62 1.94
4963 5241 0.767375 ACAAGCCTGGCTGAGAGAAA 59.233 50.000 24.16 0.00 39.62 2.52
4998 5276 4.816385 CCATGGAGTGTAATGTATGGTCAC 59.184 45.833 5.56 0.00 32.44 3.67
5049 5327 3.807622 CCTTTCGCAATACGGTATGTGAT 59.192 43.478 0.58 0.00 43.89 3.06
5072 5350 0.510359 CAGCAGTTGAACAGCGTCTC 59.490 55.000 7.06 0.00 35.63 3.36
5149 5427 7.214381 CCGATAAATACAAAGTGGGTGATCTA 58.786 38.462 0.00 0.00 0.00 1.98
5174 5452 6.835819 AACCAAAGAAAACCTTATCCTAGC 57.164 37.500 0.00 0.00 34.00 3.42
5257 5536 9.768215 TGGACAAAAGGAAAAATCCTCTAATAT 57.232 29.630 0.00 0.00 39.65 1.28
5405 5684 3.181469 ACCTTTCACAGCAGTTAGAACGA 60.181 43.478 0.00 0.00 0.00 3.85
5466 5745 6.982724 CACTTGAGAAAAAGAGGCAAATTCTT 59.017 34.615 0.00 0.00 36.49 2.52
5530 5809 6.604396 TGAGAACATTGCCATGAAATGTCTAT 59.396 34.615 20.34 12.72 45.25 1.98
5898 6214 0.522626 CATCATGACAAAGCACGCCA 59.477 50.000 0.00 0.00 0.00 5.69
5900 6216 2.159476 ACATCATCATGACAAAGCACGC 60.159 45.455 0.00 0.00 33.72 5.34
5928 6244 3.066203 TGAGCGATTACGTAAGCATCTCA 59.934 43.478 27.25 27.25 45.62 3.27
5934 6250 1.330903 GCGTTGAGCGATTACGTAAGC 60.331 52.381 13.46 13.46 44.77 3.09
6066 6382 7.406031 TCTAACATTATCCCCATCTATCGTC 57.594 40.000 0.00 0.00 0.00 4.20
6072 6388 7.313731 TCCTAGTTCTAACATTATCCCCATCT 58.686 38.462 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.