Multiple sequence alignment - TraesCS2A01G116100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G116100 chr2A 100.000 3827 0 0 1 3827 66320863 66317037 0.000000e+00 7068.0
1 TraesCS2A01G116100 chr2B 85.137 2846 193 98 433 3165 102124742 102127470 0.000000e+00 2700.0
2 TraesCS2A01G116100 chr2B 84.444 720 64 21 3143 3827 102128316 102129022 0.000000e+00 665.0
3 TraesCS2A01G116100 chr2D 85.409 1638 115 71 278 1818 68731227 68732837 0.000000e+00 1587.0
4 TraesCS2A01G116100 chr2D 89.774 841 36 24 2394 3222 68733640 68734442 0.000000e+00 1031.0
5 TraesCS2A01G116100 chr2D 88.601 579 30 14 1831 2394 68733049 68733606 0.000000e+00 671.0
6 TraesCS2A01G116100 chr2D 88.022 359 25 11 3388 3732 68735941 68736295 3.560000e-110 409.0
7 TraesCS2A01G116100 chr2D 91.124 169 9 2 3230 3392 68734478 68734646 1.380000e-54 224.0
8 TraesCS2A01G116100 chr6D 88.571 70 6 2 3506 3575 9964732 9964799 2.450000e-12 84.2
9 TraesCS2A01G116100 chr4D 100.000 29 0 0 3794 3822 316195900 316195928 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G116100 chr2A 66317037 66320863 3826 True 7068.0 7068 100.0000 1 3827 1 chr2A.!!$R1 3826
1 TraesCS2A01G116100 chr2B 102124742 102129022 4280 False 1682.5 2700 84.7905 433 3827 2 chr2B.!!$F1 3394
2 TraesCS2A01G116100 chr2D 68731227 68736295 5068 False 784.4 1587 88.5860 278 3732 5 chr2D.!!$F1 3454

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.031585 TCAACGACGAGGTGTTGAGG 59.968 55.0 0.00 0.0 46.86 3.86 F
166 167 0.105760 ACCCCACCACAAAGCATTGA 60.106 50.0 8.96 0.0 38.94 2.57 F
645 680 0.250234 TCATCGGGTGAAGAAGCTGG 59.750 55.0 0.00 0.0 32.78 4.85 F
732 785 0.320683 TGTGAGGACAAGGATGCACG 60.321 55.0 0.00 0.0 0.00 5.34 F
2215 2581 0.481128 TTGGTTCCCTTTCCCTCACC 59.519 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1120 1203 0.252742 ACGGGGAAGGTGAGGAAGAT 60.253 55.000 0.00 0.0 0.00 2.40 R
1208 1323 0.319727 CATCTCCATCTCCGCAGCTC 60.320 60.000 0.00 0.0 0.00 4.09 R
2303 2700 1.222936 CAGCTCCCGGATCTGCTTT 59.777 57.895 0.73 0.0 33.03 3.51 R
2709 3136 1.337823 TGCCTACTCGACTGCTTTTCC 60.338 52.381 0.00 0.0 0.00 3.13 R
3394 4736 0.994995 CGAGTGTCATTTCTCTGCCG 59.005 55.000 0.00 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.348647 TGTGGTCATGATCGAATGGTT 57.651 42.857 0.00 0.00 0.00 3.67
21 22 3.009026 TGTGGTCATGATCGAATGGTTG 58.991 45.455 0.00 0.00 0.00 3.77
22 23 2.355756 GTGGTCATGATCGAATGGTTGG 59.644 50.000 0.00 0.00 0.00 3.77
23 24 1.949525 GGTCATGATCGAATGGTTGGG 59.050 52.381 0.00 0.00 0.00 4.12
24 25 1.334869 GTCATGATCGAATGGTTGGGC 59.665 52.381 0.00 0.00 0.00 5.36
25 26 1.212688 TCATGATCGAATGGTTGGGCT 59.787 47.619 0.00 0.00 0.00 5.19
26 27 1.335810 CATGATCGAATGGTTGGGCTG 59.664 52.381 0.00 0.00 0.00 4.85
27 28 1.031571 TGATCGAATGGTTGGGCTGC 61.032 55.000 0.00 0.00 0.00 5.25
28 29 1.728490 GATCGAATGGTTGGGCTGCC 61.728 60.000 11.05 11.05 0.00 4.85
29 30 2.215451 ATCGAATGGTTGGGCTGCCT 62.215 55.000 19.68 0.00 0.00 4.75
30 31 1.978617 CGAATGGTTGGGCTGCCTT 60.979 57.895 19.68 3.15 0.00 4.35
31 32 1.893062 GAATGGTTGGGCTGCCTTC 59.107 57.895 19.68 9.42 0.00 3.46
32 33 0.613012 GAATGGTTGGGCTGCCTTCT 60.613 55.000 19.68 0.00 0.00 2.85
33 34 0.901580 AATGGTTGGGCTGCCTTCTG 60.902 55.000 19.68 0.00 0.00 3.02
34 35 2.085343 ATGGTTGGGCTGCCTTCTGT 62.085 55.000 19.68 0.00 0.00 3.41
35 36 2.270986 GGTTGGGCTGCCTTCTGTG 61.271 63.158 19.68 0.00 0.00 3.66
36 37 1.529244 GTTGGGCTGCCTTCTGTGT 60.529 57.895 19.68 0.00 0.00 3.72
37 38 0.250727 GTTGGGCTGCCTTCTGTGTA 60.251 55.000 19.68 0.00 0.00 2.90
38 39 0.036732 TTGGGCTGCCTTCTGTGTAG 59.963 55.000 19.68 0.00 0.00 2.74
39 40 1.746991 GGGCTGCCTTCTGTGTAGC 60.747 63.158 19.68 0.00 0.00 3.58
40 41 1.298014 GGCTGCCTTCTGTGTAGCT 59.702 57.895 12.43 0.00 34.89 3.32
41 42 0.742635 GGCTGCCTTCTGTGTAGCTC 60.743 60.000 12.43 0.00 34.89 4.09
42 43 0.036952 GCTGCCTTCTGTGTAGCTCA 60.037 55.000 0.00 0.00 0.00 4.26
43 44 1.406614 GCTGCCTTCTGTGTAGCTCAT 60.407 52.381 0.00 0.00 0.00 2.90
44 45 2.277969 CTGCCTTCTGTGTAGCTCATG 58.722 52.381 0.00 0.00 0.00 3.07
45 46 1.625315 TGCCTTCTGTGTAGCTCATGT 59.375 47.619 0.00 0.00 0.00 3.21
46 47 2.005451 GCCTTCTGTGTAGCTCATGTG 58.995 52.381 0.00 0.00 0.00 3.21
47 48 2.625737 CCTTCTGTGTAGCTCATGTGG 58.374 52.381 0.00 0.00 0.00 4.17
48 49 2.027745 CCTTCTGTGTAGCTCATGTGGT 60.028 50.000 4.72 4.72 0.00 4.16
49 50 3.257393 CTTCTGTGTAGCTCATGTGGTC 58.743 50.000 2.22 0.00 0.00 4.02
50 51 2.247358 TCTGTGTAGCTCATGTGGTCA 58.753 47.619 2.22 0.00 0.00 4.02
51 52 2.632512 TCTGTGTAGCTCATGTGGTCAA 59.367 45.455 2.22 0.00 0.00 3.18
52 53 2.998670 CTGTGTAGCTCATGTGGTCAAG 59.001 50.000 2.22 0.00 0.00 3.02
53 54 2.632512 TGTGTAGCTCATGTGGTCAAGA 59.367 45.455 2.22 0.00 0.00 3.02
54 55 3.261643 TGTGTAGCTCATGTGGTCAAGAT 59.738 43.478 2.22 0.00 0.00 2.40
55 56 3.868077 GTGTAGCTCATGTGGTCAAGATC 59.132 47.826 2.22 0.00 0.00 2.75
56 57 3.515104 TGTAGCTCATGTGGTCAAGATCA 59.485 43.478 2.22 0.00 0.00 2.92
57 58 3.263489 AGCTCATGTGGTCAAGATCAG 57.737 47.619 0.00 0.00 0.00 2.90
58 59 2.093075 AGCTCATGTGGTCAAGATCAGG 60.093 50.000 0.00 0.00 0.00 3.86
59 60 2.355513 GCTCATGTGGTCAAGATCAGGT 60.356 50.000 0.00 0.00 0.00 4.00
60 61 3.871463 GCTCATGTGGTCAAGATCAGGTT 60.871 47.826 0.00 0.00 0.00 3.50
61 62 3.937706 CTCATGTGGTCAAGATCAGGTTC 59.062 47.826 0.00 0.00 0.00 3.62
62 63 2.859165 TGTGGTCAAGATCAGGTTCC 57.141 50.000 0.00 0.00 0.00 3.62
63 64 2.338809 TGTGGTCAAGATCAGGTTCCT 58.661 47.619 0.00 0.00 0.00 3.36
64 65 2.711009 TGTGGTCAAGATCAGGTTCCTT 59.289 45.455 0.00 0.00 0.00 3.36
65 66 3.244561 TGTGGTCAAGATCAGGTTCCTTC 60.245 47.826 0.00 0.00 0.00 3.46
66 67 3.008485 GTGGTCAAGATCAGGTTCCTTCT 59.992 47.826 0.00 0.00 0.00 2.85
67 68 3.261897 TGGTCAAGATCAGGTTCCTTCTC 59.738 47.826 0.00 0.00 0.00 2.87
68 69 3.261897 GGTCAAGATCAGGTTCCTTCTCA 59.738 47.826 0.00 0.00 0.00 3.27
69 70 4.249661 GTCAAGATCAGGTTCCTTCTCAC 58.750 47.826 0.00 0.00 0.00 3.51
70 71 4.020662 GTCAAGATCAGGTTCCTTCTCACT 60.021 45.833 0.00 0.00 0.00 3.41
71 72 4.594920 TCAAGATCAGGTTCCTTCTCACTT 59.405 41.667 0.00 0.00 0.00 3.16
72 73 5.072329 TCAAGATCAGGTTCCTTCTCACTTT 59.928 40.000 0.00 0.00 0.00 2.66
73 74 5.159273 AGATCAGGTTCCTTCTCACTTTC 57.841 43.478 0.00 0.00 0.00 2.62
74 75 4.594920 AGATCAGGTTCCTTCTCACTTTCA 59.405 41.667 0.00 0.00 0.00 2.69
75 76 4.771114 TCAGGTTCCTTCTCACTTTCAA 57.229 40.909 0.00 0.00 0.00 2.69
76 77 4.708177 TCAGGTTCCTTCTCACTTTCAAG 58.292 43.478 0.00 0.00 0.00 3.02
77 78 3.251972 CAGGTTCCTTCTCACTTTCAAGC 59.748 47.826 0.00 0.00 0.00 4.01
78 79 3.137360 AGGTTCCTTCTCACTTTCAAGCT 59.863 43.478 0.00 0.00 0.00 3.74
79 80 3.251972 GGTTCCTTCTCACTTTCAAGCTG 59.748 47.826 0.00 0.00 0.00 4.24
80 81 3.131709 TCCTTCTCACTTTCAAGCTGG 57.868 47.619 0.00 0.00 0.00 4.85
81 82 2.439507 TCCTTCTCACTTTCAAGCTGGT 59.560 45.455 0.00 0.00 0.00 4.00
82 83 2.551459 CCTTCTCACTTTCAAGCTGGTG 59.449 50.000 0.00 0.00 0.00 4.17
83 84 3.470709 CTTCTCACTTTCAAGCTGGTGA 58.529 45.455 0.00 0.00 37.21 4.02
85 86 2.843701 CTCACTTTCAAGCTGGTGAGT 58.156 47.619 17.85 8.72 45.91 3.41
86 87 2.805099 CTCACTTTCAAGCTGGTGAGTC 59.195 50.000 17.85 0.00 45.91 3.36
87 88 1.876156 CACTTTCAAGCTGGTGAGTCC 59.124 52.381 0.00 0.00 32.12 3.85
88 89 1.202818 ACTTTCAAGCTGGTGAGTCCC 60.203 52.381 0.00 0.00 34.77 4.46
89 90 0.843309 TTTCAAGCTGGTGAGTCCCA 59.157 50.000 0.00 1.07 34.77 4.37
90 91 0.108585 TTCAAGCTGGTGAGTCCCAC 59.891 55.000 0.00 0.00 44.95 4.61
91 92 1.669115 CAAGCTGGTGAGTCCCACG 60.669 63.158 0.00 0.00 46.62 4.94
92 93 1.837051 AAGCTGGTGAGTCCCACGA 60.837 57.895 0.00 0.00 46.62 4.35
93 94 1.407656 AAGCTGGTGAGTCCCACGAA 61.408 55.000 0.00 0.00 46.62 3.85
94 95 1.668151 GCTGGTGAGTCCCACGAAC 60.668 63.158 0.00 0.00 46.62 3.95
95 96 2.050269 CTGGTGAGTCCCACGAACT 58.950 57.895 0.00 0.00 46.62 3.01
96 97 0.393077 CTGGTGAGTCCCACGAACTT 59.607 55.000 0.00 0.00 46.62 2.66
97 98 0.105964 TGGTGAGTCCCACGAACTTG 59.894 55.000 0.00 0.00 46.62 3.16
98 99 0.391597 GGTGAGTCCCACGAACTTGA 59.608 55.000 0.00 0.00 46.62 3.02
99 100 1.202604 GGTGAGTCCCACGAACTTGAA 60.203 52.381 0.00 0.00 46.62 2.69
100 101 2.135933 GTGAGTCCCACGAACTTGAAG 58.864 52.381 0.00 0.00 35.86 3.02
101 102 1.070134 TGAGTCCCACGAACTTGAAGG 59.930 52.381 0.00 0.00 0.00 3.46
102 103 1.070289 GAGTCCCACGAACTTGAAGGT 59.930 52.381 0.00 0.00 0.00 3.50
103 104 1.202651 AGTCCCACGAACTTGAAGGTG 60.203 52.381 0.00 0.00 0.00 4.00
104 105 1.124780 TCCCACGAACTTGAAGGTGA 58.875 50.000 0.00 0.00 32.23 4.02
105 106 1.697432 TCCCACGAACTTGAAGGTGAT 59.303 47.619 0.00 0.00 32.23 3.06
106 107 2.076863 CCCACGAACTTGAAGGTGATC 58.923 52.381 0.00 0.00 32.23 2.92
107 108 2.549992 CCCACGAACTTGAAGGTGATCA 60.550 50.000 0.00 0.00 32.23 2.92
108 109 3.338249 CCACGAACTTGAAGGTGATCAT 58.662 45.455 0.00 0.00 32.23 2.45
109 110 3.753272 CCACGAACTTGAAGGTGATCATT 59.247 43.478 0.00 0.00 32.23 2.57
110 111 4.216257 CCACGAACTTGAAGGTGATCATTT 59.784 41.667 0.00 0.00 32.23 2.32
111 112 5.278463 CCACGAACTTGAAGGTGATCATTTT 60.278 40.000 0.00 0.00 32.23 1.82
112 113 5.853282 CACGAACTTGAAGGTGATCATTTTC 59.147 40.000 0.00 6.93 32.23 2.29
113 114 5.530915 ACGAACTTGAAGGTGATCATTTTCA 59.469 36.000 16.41 16.41 0.00 2.69
114 115 6.039270 ACGAACTTGAAGGTGATCATTTTCAA 59.961 34.615 24.24 24.24 37.25 2.69
115 116 6.360681 CGAACTTGAAGGTGATCATTTTCAAC 59.639 38.462 23.03 16.48 35.34 3.18
116 117 5.762045 ACTTGAAGGTGATCATTTTCAACG 58.238 37.500 23.03 20.69 38.40 4.10
117 118 5.530915 ACTTGAAGGTGATCATTTTCAACGA 59.469 36.000 23.03 11.39 38.40 3.85
118 119 5.356882 TGAAGGTGATCATTTTCAACGAC 57.643 39.130 17.47 0.00 38.40 4.34
119 120 4.084066 TGAAGGTGATCATTTTCAACGACG 60.084 41.667 17.47 0.00 38.40 5.12
120 121 3.659786 AGGTGATCATTTTCAACGACGA 58.340 40.909 0.00 0.00 38.40 4.20
121 122 3.679980 AGGTGATCATTTTCAACGACGAG 59.320 43.478 0.00 0.00 38.40 4.18
122 123 3.181520 GGTGATCATTTTCAACGACGAGG 60.182 47.826 0.00 0.00 0.00 4.63
123 124 3.432252 GTGATCATTTTCAACGACGAGGT 59.568 43.478 0.00 0.00 0.00 3.85
124 125 3.431912 TGATCATTTTCAACGACGAGGTG 59.568 43.478 0.00 0.00 39.43 4.00
125 126 2.828877 TCATTTTCAACGACGAGGTGT 58.171 42.857 0.00 0.00 39.03 4.16
126 127 3.199677 TCATTTTCAACGACGAGGTGTT 58.800 40.909 0.00 0.00 39.03 3.32
127 128 3.001838 TCATTTTCAACGACGAGGTGTTG 59.998 43.478 0.00 0.00 45.24 3.33
129 130 3.562639 TCAACGACGAGGTGTTGAG 57.437 52.632 0.00 0.00 46.86 3.02
130 131 0.031585 TCAACGACGAGGTGTTGAGG 59.968 55.000 0.00 0.00 46.86 3.86
131 132 0.249322 CAACGACGAGGTGTTGAGGT 60.249 55.000 0.00 0.00 46.45 3.85
132 133 0.249322 AACGACGAGGTGTTGAGGTG 60.249 55.000 0.00 0.00 35.76 4.00
133 134 1.372997 CGACGAGGTGTTGAGGTGG 60.373 63.158 0.00 0.00 33.36 4.61
134 135 1.746517 GACGAGGTGTTGAGGTGGT 59.253 57.895 0.00 0.00 0.00 4.16
135 136 0.600255 GACGAGGTGTTGAGGTGGTG 60.600 60.000 0.00 0.00 0.00 4.17
136 137 1.301716 CGAGGTGTTGAGGTGGTGG 60.302 63.158 0.00 0.00 0.00 4.61
137 138 1.600916 GAGGTGTTGAGGTGGTGGC 60.601 63.158 0.00 0.00 0.00 5.01
138 139 2.597510 GGTGTTGAGGTGGTGGCC 60.598 66.667 0.00 0.00 0.00 5.36
139 140 2.194597 GTGTTGAGGTGGTGGCCA 59.805 61.111 0.00 0.00 0.00 5.36
140 141 1.454847 GTGTTGAGGTGGTGGCCAA 60.455 57.895 7.24 0.00 34.18 4.52
141 142 1.152777 TGTTGAGGTGGTGGCCAAG 60.153 57.895 7.24 0.00 34.18 3.61
142 143 1.152756 GTTGAGGTGGTGGCCAAGT 60.153 57.895 7.24 0.00 34.18 3.16
143 144 1.152777 TTGAGGTGGTGGCCAAGTG 60.153 57.895 7.24 0.00 34.18 3.16
144 145 2.985847 GAGGTGGTGGCCAAGTGC 60.986 66.667 7.24 0.00 34.18 4.40
145 146 3.790416 GAGGTGGTGGCCAAGTGCA 62.790 63.158 7.24 0.00 43.89 4.57
146 147 2.837291 GGTGGTGGCCAAGTGCAA 60.837 61.111 7.24 0.00 43.89 4.08
147 148 2.430610 GGTGGTGGCCAAGTGCAAA 61.431 57.895 7.24 0.00 43.89 3.68
148 149 1.227234 GTGGTGGCCAAGTGCAAAC 60.227 57.895 7.24 0.00 43.89 2.93
149 150 2.421314 GGTGGCCAAGTGCAAACC 59.579 61.111 7.24 0.00 43.89 3.27
150 151 2.421314 GTGGCCAAGTGCAAACCC 59.579 61.111 7.24 0.00 43.89 4.11
151 152 2.841988 TGGCCAAGTGCAAACCCC 60.842 61.111 0.61 0.00 43.89 4.95
152 153 2.841988 GGCCAAGTGCAAACCCCA 60.842 61.111 0.00 0.00 43.89 4.96
153 154 2.421314 GCCAAGTGCAAACCCCAC 59.579 61.111 0.00 0.00 40.77 4.61
154 155 3.137687 CCAAGTGCAAACCCCACC 58.862 61.111 0.00 0.00 33.75 4.61
155 156 1.760086 CCAAGTGCAAACCCCACCA 60.760 57.895 0.00 0.00 33.75 4.17
156 157 1.441311 CAAGTGCAAACCCCACCAC 59.559 57.895 0.00 0.00 33.75 4.16
157 158 1.000993 AAGTGCAAACCCCACCACA 59.999 52.632 0.00 0.00 33.75 4.17
158 159 0.616111 AAGTGCAAACCCCACCACAA 60.616 50.000 0.00 0.00 33.75 3.33
159 160 0.616111 AGTGCAAACCCCACCACAAA 60.616 50.000 0.00 0.00 33.75 2.83
160 161 0.179086 GTGCAAACCCCACCACAAAG 60.179 55.000 0.00 0.00 0.00 2.77
161 162 1.227527 GCAAACCCCACCACAAAGC 60.228 57.895 0.00 0.00 0.00 3.51
162 163 1.965754 GCAAACCCCACCACAAAGCA 61.966 55.000 0.00 0.00 0.00 3.91
163 164 0.758123 CAAACCCCACCACAAAGCAT 59.242 50.000 0.00 0.00 0.00 3.79
164 165 1.140652 CAAACCCCACCACAAAGCATT 59.859 47.619 0.00 0.00 0.00 3.56
165 166 0.758123 AACCCCACCACAAAGCATTG 59.242 50.000 0.00 0.00 42.46 2.82
166 167 0.105760 ACCCCACCACAAAGCATTGA 60.106 50.000 8.96 0.00 38.94 2.57
167 168 0.318120 CCCCACCACAAAGCATTGAC 59.682 55.000 8.96 0.00 38.94 3.18
168 169 1.039068 CCCACCACAAAGCATTGACA 58.961 50.000 8.96 0.00 38.94 3.58
169 170 1.619827 CCCACCACAAAGCATTGACAT 59.380 47.619 8.96 0.00 38.94 3.06
170 171 2.610976 CCCACCACAAAGCATTGACATG 60.611 50.000 8.96 3.16 38.94 3.21
171 172 2.610976 CCACCACAAAGCATTGACATGG 60.611 50.000 8.96 8.35 38.94 3.66
172 173 2.296752 CACCACAAAGCATTGACATGGA 59.703 45.455 14.55 0.00 38.94 3.41
173 174 3.056393 CACCACAAAGCATTGACATGGAT 60.056 43.478 14.55 0.03 38.94 3.41
174 175 3.056393 ACCACAAAGCATTGACATGGATG 60.056 43.478 14.55 0.00 38.94 3.51
175 176 2.927477 CACAAAGCATTGACATGGATGC 59.073 45.455 17.91 17.91 46.88 3.91
180 181 3.637998 GCATTGACATGGATGCTAAGG 57.362 47.619 18.16 0.45 43.98 2.69
181 182 2.295349 GCATTGACATGGATGCTAAGGG 59.705 50.000 18.16 0.00 43.98 3.95
182 183 3.559069 CATTGACATGGATGCTAAGGGT 58.441 45.455 0.00 0.00 0.00 4.34
183 184 2.715749 TGACATGGATGCTAAGGGTG 57.284 50.000 0.00 0.00 0.00 4.61
184 185 1.312815 GACATGGATGCTAAGGGTGC 58.687 55.000 0.00 0.00 0.00 5.01
185 186 0.921896 ACATGGATGCTAAGGGTGCT 59.078 50.000 0.00 0.00 0.00 4.40
186 187 1.285962 ACATGGATGCTAAGGGTGCTT 59.714 47.619 0.00 0.00 0.00 3.91
187 188 2.291800 ACATGGATGCTAAGGGTGCTTT 60.292 45.455 0.00 0.00 0.00 3.51
188 189 2.603075 TGGATGCTAAGGGTGCTTTT 57.397 45.000 0.00 0.00 0.00 2.27
189 190 2.170166 TGGATGCTAAGGGTGCTTTTG 58.830 47.619 0.00 0.00 0.00 2.44
190 191 2.171003 GGATGCTAAGGGTGCTTTTGT 58.829 47.619 0.00 0.00 0.00 2.83
191 192 2.094545 GGATGCTAAGGGTGCTTTTGTG 60.095 50.000 0.00 0.00 0.00 3.33
192 193 2.065899 TGCTAAGGGTGCTTTTGTGT 57.934 45.000 0.00 0.00 0.00 3.72
193 194 2.383855 TGCTAAGGGTGCTTTTGTGTT 58.616 42.857 0.00 0.00 0.00 3.32
194 195 3.556999 TGCTAAGGGTGCTTTTGTGTTA 58.443 40.909 0.00 0.00 0.00 2.41
195 196 4.148838 TGCTAAGGGTGCTTTTGTGTTAT 58.851 39.130 0.00 0.00 0.00 1.89
196 197 4.217550 TGCTAAGGGTGCTTTTGTGTTATC 59.782 41.667 0.00 0.00 0.00 1.75
197 198 4.459337 GCTAAGGGTGCTTTTGTGTTATCT 59.541 41.667 0.00 0.00 0.00 1.98
198 199 5.392057 GCTAAGGGTGCTTTTGTGTTATCTC 60.392 44.000 0.00 0.00 0.00 2.75
199 200 4.373156 AGGGTGCTTTTGTGTTATCTCT 57.627 40.909 0.00 0.00 0.00 3.10
200 201 4.074970 AGGGTGCTTTTGTGTTATCTCTG 58.925 43.478 0.00 0.00 0.00 3.35
201 202 3.366374 GGGTGCTTTTGTGTTATCTCTGC 60.366 47.826 0.00 0.00 0.00 4.26
202 203 3.503748 GGTGCTTTTGTGTTATCTCTGCT 59.496 43.478 0.00 0.00 0.00 4.24
203 204 4.695455 GGTGCTTTTGTGTTATCTCTGCTA 59.305 41.667 0.00 0.00 0.00 3.49
204 205 5.355350 GGTGCTTTTGTGTTATCTCTGCTAT 59.645 40.000 0.00 0.00 0.00 2.97
205 206 6.457528 GGTGCTTTTGTGTTATCTCTGCTATC 60.458 42.308 0.00 0.00 0.00 2.08
206 207 6.314896 GTGCTTTTGTGTTATCTCTGCTATCT 59.685 38.462 0.00 0.00 0.00 1.98
207 208 6.881065 TGCTTTTGTGTTATCTCTGCTATCTT 59.119 34.615 0.00 0.00 0.00 2.40
208 209 8.040727 TGCTTTTGTGTTATCTCTGCTATCTTA 58.959 33.333 0.00 0.00 0.00 2.10
209 210 9.050601 GCTTTTGTGTTATCTCTGCTATCTTAT 57.949 33.333 0.00 0.00 0.00 1.73
212 213 9.973450 TTTGTGTTATCTCTGCTATCTTATCTC 57.027 33.333 0.00 0.00 0.00 2.75
213 214 8.932434 TGTGTTATCTCTGCTATCTTATCTCT 57.068 34.615 0.00 0.00 0.00 3.10
246 247 8.990163 TTAGTCCTTATTCAAAACTTTCTGGT 57.010 30.769 0.00 0.00 0.00 4.00
248 249 8.392372 AGTCCTTATTCAAAACTTTCTGGTAC 57.608 34.615 0.00 0.00 0.00 3.34
249 250 8.218488 AGTCCTTATTCAAAACTTTCTGGTACT 58.782 33.333 0.00 0.00 0.00 2.73
250 251 9.498176 GTCCTTATTCAAAACTTTCTGGTACTA 57.502 33.333 0.00 0.00 0.00 1.82
296 297 9.772973 AACACATCTGTTAGTACTATTTTGACA 57.227 29.630 2.79 3.93 38.95 3.58
318 319 8.962679 TGACAAAGTATGGTTATGGTTTATTCC 58.037 33.333 0.00 0.00 0.00 3.01
319 320 9.185680 GACAAAGTATGGTTATGGTTTATTCCT 57.814 33.333 0.00 0.00 0.00 3.36
326 327 8.919777 ATGGTTATGGTTTATTCCTAGCTAAC 57.080 34.615 0.00 0.00 0.00 2.34
335 336 7.712205 GGTTTATTCCTAGCTAACGGTTTATGA 59.288 37.037 0.00 0.00 0.00 2.15
349 350 8.958119 AACGGTTTATGATGTGACTATTATGT 57.042 30.769 0.00 0.00 0.00 2.29
361 362 7.413644 TGTGACTATTATGTTGTTGTTGTGTG 58.586 34.615 0.00 0.00 0.00 3.82
386 387 2.157834 TGGTAACATCACCACGACAC 57.842 50.000 0.00 0.00 43.76 3.67
387 388 1.270412 TGGTAACATCACCACGACACC 60.270 52.381 0.00 0.00 43.76 4.16
388 389 1.270412 GGTAACATCACCACGACACCA 60.270 52.381 0.00 0.00 38.55 4.17
389 390 1.796459 GTAACATCACCACGACACCAC 59.204 52.381 0.00 0.00 0.00 4.16
390 391 0.534203 AACATCACCACGACACCACC 60.534 55.000 0.00 0.00 0.00 4.61
391 392 1.671054 CATCACCACGACACCACCC 60.671 63.158 0.00 0.00 0.00 4.61
398 399 4.329545 CGACACCACCCCACCCTG 62.330 72.222 0.00 0.00 0.00 4.45
400 401 3.491598 GACACCACCCCACCCTGTG 62.492 68.421 0.00 0.00 0.00 3.66
415 416 2.357637 CCCTGTGTTGTGTGTAAACCAG 59.642 50.000 0.00 0.00 0.00 4.00
416 417 3.275143 CCTGTGTTGTGTGTAAACCAGA 58.725 45.455 0.00 0.00 32.28 3.86
423 424 5.906113 TTGTGTGTAAACCAGACAACAAT 57.094 34.783 1.43 0.00 46.83 2.71
428 429 7.121463 TGTGTGTAAACCAGACAACAATACTTT 59.879 33.333 0.00 0.00 43.69 2.66
440 441 9.862371 AGACAACAATACTTTGTATCTGAGTAG 57.138 33.333 5.31 0.00 45.30 2.57
478 479 1.272490 GCATCGGTGCCTATGCTACTA 59.728 52.381 10.29 0.00 45.76 1.82
501 502 3.083349 CCAGACTGGCGGGGATGA 61.083 66.667 8.99 0.00 0.00 2.92
504 513 2.514824 GACTGGCGGGGATGAAGC 60.515 66.667 0.00 0.00 0.00 3.86
574 594 2.754658 AGTCTAGGTCGGGCCACG 60.755 66.667 4.39 6.13 46.11 4.94
578 598 1.529948 CTAGGTCGGGCCACGGATA 60.530 63.158 4.39 0.00 44.45 2.59
584 604 1.817941 CGGGCCACGGATACAAAGG 60.818 63.158 4.39 0.00 39.42 3.11
585 605 1.453197 GGGCCACGGATACAAAGGG 60.453 63.158 4.39 0.00 0.00 3.95
588 608 1.453197 CCACGGATACAAAGGGCCC 60.453 63.158 16.46 16.46 0.00 5.80
599 619 3.790126 ACAAAGGGCCCAAAATAGATGT 58.210 40.909 27.56 13.20 0.00 3.06
603 623 4.814224 AGGGCCCAAAATAGATGTATGT 57.186 40.909 27.56 0.00 0.00 2.29
612 632 7.913297 CCCAAAATAGATGTATGTAACCAAACG 59.087 37.037 0.00 0.00 0.00 3.60
615 635 4.939509 AGATGTATGTAACCAAACGTGC 57.060 40.909 0.00 0.00 0.00 5.34
616 636 3.687698 AGATGTATGTAACCAAACGTGCC 59.312 43.478 0.00 0.00 0.00 5.01
618 638 2.224572 TGTATGTAACCAAACGTGCCCT 60.225 45.455 0.00 0.00 0.00 5.19
619 639 1.530323 ATGTAACCAAACGTGCCCTC 58.470 50.000 0.00 0.00 0.00 4.30
628 653 3.770040 CGTGCCCTCGGGTGATCA 61.770 66.667 3.54 0.00 37.65 2.92
645 680 0.250234 TCATCGGGTGAAGAAGCTGG 59.750 55.000 0.00 0.00 32.78 4.85
648 683 2.747855 GGGTGAAGAAGCTGGCCG 60.748 66.667 0.00 0.00 0.00 6.13
652 687 2.347490 GAAGAAGCTGGCCGACCA 59.653 61.111 0.00 0.00 46.51 4.02
669 704 4.282068 CGACCAATGAAAATGGAATAGCG 58.718 43.478 0.00 0.00 40.56 4.26
732 785 0.320683 TGTGAGGACAAGGATGCACG 60.321 55.000 0.00 0.00 0.00 5.34
762 835 2.065906 GACCTAGCGCGGGAGAGAAG 62.066 65.000 24.88 4.87 0.00 2.85
791 864 2.513897 GGAATCTTCCCGTGCCCG 60.514 66.667 0.00 0.00 41.62 6.13
885 958 1.142748 CATCCTCCTGTCTGTCCGC 59.857 63.158 0.00 0.00 0.00 5.54
942 1020 4.620937 GTCGGCCTTATCCCCGCC 62.621 72.222 0.00 0.00 44.01 6.13
1035 1113 1.375326 GAATATCCTGCCCGTCCCC 59.625 63.158 0.00 0.00 0.00 4.81
1114 1197 4.185394 GACGATTCCTTTCCTTCCTTCTC 58.815 47.826 0.00 0.00 0.00 2.87
1120 1203 2.644798 CCTTTCCTTCCTTCTCCTTCCA 59.355 50.000 0.00 0.00 0.00 3.53
1146 1229 3.316760 ACCTTCCCCGTCCCGTTC 61.317 66.667 0.00 0.00 0.00 3.95
1181 1296 5.594777 TCTCTATCTTCCTGGTTCTTTCCT 58.405 41.667 0.00 0.00 0.00 3.36
1206 1321 2.341257 GATCAATCCATCCATCCGACG 58.659 52.381 0.00 0.00 0.00 5.12
1208 1323 1.341209 TCAATCCATCCATCCGACGAG 59.659 52.381 0.00 0.00 0.00 4.18
1209 1324 1.341209 CAATCCATCCATCCGACGAGA 59.659 52.381 0.00 0.00 0.00 4.04
1230 1360 0.975135 CTGCGGAGATGGAGATGGAT 59.025 55.000 0.00 0.00 0.00 3.41
1332 1462 1.519455 GATCCACGTCTTCCAGCGG 60.519 63.158 0.00 0.00 0.00 5.52
1458 1618 2.481568 GTGTGTGTGTGATCCTGTGATG 59.518 50.000 0.00 0.00 0.00 3.07
1578 1738 3.635268 CTCAAGCCCAGCCTGTCCC 62.635 68.421 0.00 0.00 0.00 4.46
1798 1961 9.890629 ACATATTGCTGTGTTTCTCTTTATCTA 57.109 29.630 0.00 0.00 0.00 1.98
1801 1964 8.854614 ATTGCTGTGTTTCTCTTTATCTACTT 57.145 30.769 0.00 0.00 0.00 2.24
1804 1967 9.944376 TGCTGTGTTTCTCTTTATCTACTTTAT 57.056 29.630 0.00 0.00 0.00 1.40
2046 2412 1.227556 GGTGCACGACAAGGACAGT 60.228 57.895 11.45 0.00 0.00 3.55
2054 2420 2.271800 CGACAAGGACAGTAAGGATGC 58.728 52.381 0.00 0.00 0.00 3.91
2210 2576 1.152138 ACGGTTGGTTCCCTTTCCC 59.848 57.895 0.00 0.00 0.00 3.97
2215 2581 0.481128 TTGGTTCCCTTTCCCTCACC 59.519 55.000 0.00 0.00 0.00 4.02
2221 2587 1.635487 TCCCTTTCCCTCACCAGATTG 59.365 52.381 0.00 0.00 0.00 2.67
2256 2650 4.386652 CCCTCATCAAAAATCAAAGTTGCG 59.613 41.667 0.00 0.00 0.00 4.85
2364 2761 0.526524 CGACGAGGTCAAGAGCCATC 60.527 60.000 0.00 0.00 32.09 3.51
2394 2791 2.499289 AGTCGGTGCTTCTTGATGAGAT 59.501 45.455 0.00 0.00 33.49 2.75
2395 2792 2.863137 GTCGGTGCTTCTTGATGAGATC 59.137 50.000 0.00 0.00 33.49 2.75
2396 2793 2.497273 TCGGTGCTTCTTGATGAGATCA 59.503 45.455 0.00 0.00 37.55 2.92
2397 2794 3.133542 TCGGTGCTTCTTGATGAGATCAT 59.866 43.478 0.00 0.00 39.39 2.45
2440 2867 7.981789 TGTTAATTAGACATCATGGAGTCTGAC 59.018 37.037 22.93 15.65 44.32 3.51
2577 3004 2.591753 GGCAGCTGCATCTGGGTA 59.408 61.111 37.63 0.00 44.36 3.69
2709 3136 1.071471 AGGGTCGAAGCCACACTTG 59.929 57.895 0.00 0.00 39.29 3.16
2778 3217 1.302271 GGACTCGGACAACCCAACC 60.302 63.158 0.00 0.00 34.14 3.77
2784 3223 1.573829 CGGACAACCCAACCATGTCG 61.574 60.000 0.00 0.00 43.38 4.35
2785 3224 0.536460 GGACAACCCAACCATGTCGT 60.536 55.000 0.00 0.00 43.38 4.34
2786 3225 0.872388 GACAACCCAACCATGTCGTC 59.128 55.000 0.00 0.00 34.72 4.20
2803 3242 3.512452 CGTCGTCGTCGTCGCAAG 61.512 66.667 8.64 0.00 40.72 4.01
2831 3270 0.459759 GCAGGGCGTCCTTAGTGTAC 60.460 60.000 5.38 0.00 42.67 2.90
2832 3271 0.179145 CAGGGCGTCCTTAGTGTACG 60.179 60.000 5.38 0.00 42.67 3.67
2833 3272 0.610232 AGGGCGTCCTTAGTGTACGT 60.610 55.000 0.35 0.00 41.56 3.57
2834 3273 1.094785 GGGCGTCCTTAGTGTACGTA 58.905 55.000 0.00 0.00 38.81 3.57
2835 3274 1.202188 GGGCGTCCTTAGTGTACGTAC 60.202 57.143 18.90 18.90 38.81 3.67
2836 3275 1.529826 GGCGTCCTTAGTGTACGTACG 60.530 57.143 20.18 15.01 38.81 3.67
2837 3276 1.128692 GCGTCCTTAGTGTACGTACGT 59.871 52.381 25.98 25.98 38.81 3.57
2838 3277 2.347452 GCGTCCTTAGTGTACGTACGTA 59.653 50.000 23.60 23.60 38.81 3.57
2848 3287 4.700213 AGTGTACGTACGTATAACCTTGGT 59.300 41.667 29.05 12.50 32.82 3.67
2849 3288 5.183140 AGTGTACGTACGTATAACCTTGGTT 59.817 40.000 29.05 10.11 32.82 3.67
2853 3292 5.296748 ACGTACGTATAACCTTGGTTGTTT 58.703 37.500 21.41 3.17 0.00 2.83
2856 3295 3.822167 ACGTATAACCTTGGTTGTTTGGG 59.178 43.478 14.67 2.85 0.00 4.12
2857 3296 3.191791 CGTATAACCTTGGTTGTTTGGGG 59.808 47.826 14.67 0.00 0.00 4.96
2858 3297 3.621682 ATAACCTTGGTTGTTTGGGGA 57.378 42.857 14.67 0.00 0.00 4.81
2860 3299 2.009681 ACCTTGGTTGTTTGGGGATC 57.990 50.000 0.00 0.00 0.00 3.36
2862 3301 2.719705 ACCTTGGTTGTTTGGGGATCTA 59.280 45.455 0.00 0.00 0.00 1.98
2863 3302 3.245264 ACCTTGGTTGTTTGGGGATCTAG 60.245 47.826 0.00 0.00 0.00 2.43
2864 3303 3.245264 CCTTGGTTGTTTGGGGATCTAGT 60.245 47.826 0.00 0.00 0.00 2.57
2927 3366 6.877611 AAGGTCACATTTTACAGTAAGGTG 57.122 37.500 12.34 12.34 38.31 4.00
2942 3381 0.173255 AGGTGCGCCACATTATTTGC 59.827 50.000 20.59 0.00 35.86 3.68
2965 3404 7.059788 TGCTGATGTAGAGAAGAGAGAATACT 58.940 38.462 0.00 0.00 0.00 2.12
2966 3405 7.559533 TGCTGATGTAGAGAAGAGAGAATACTT 59.440 37.037 0.00 0.00 0.00 2.24
2967 3406 9.062524 GCTGATGTAGAGAAGAGAGAATACTTA 57.937 37.037 0.00 0.00 0.00 2.24
2973 3412 7.333528 AGAGAAGAGAGAATACTTACTGCTG 57.666 40.000 0.00 0.00 0.00 4.41
3009 3448 0.965866 GGCCAAGCTTAAGGTGACCC 60.966 60.000 8.16 5.09 0.00 4.46
3010 3449 0.251165 GCCAAGCTTAAGGTGACCCA 60.251 55.000 8.16 0.00 0.00 4.51
3011 3450 1.616994 GCCAAGCTTAAGGTGACCCAT 60.617 52.381 8.16 0.00 0.00 4.00
3012 3451 2.094675 CCAAGCTTAAGGTGACCCATG 58.905 52.381 8.16 1.41 0.00 3.66
3048 3487 2.030958 GCCACAAGCTTTGCCATGC 61.031 57.895 0.00 0.00 38.99 4.06
3050 3489 0.669318 CCACAAGCTTTGCCATGCAG 60.669 55.000 0.00 0.00 40.61 4.41
3068 3507 3.886505 TGCAGGTTGTAAAGGGTAGTTTG 59.113 43.478 0.00 0.00 0.00 2.93
3077 3516 3.812156 AAGGGTAGTTTGTTTTGCACC 57.188 42.857 0.00 0.00 0.00 5.01
3177 4484 5.009010 ACATCCAGCTTTGAGTAGTTTGTTG 59.991 40.000 0.00 0.00 0.00 3.33
3217 4524 9.970395 TTAATTGCTTCATACATGATCCATTTC 57.030 29.630 0.00 0.00 36.56 2.17
3222 4529 7.445096 TGCTTCATACATGATCCATTTCGTTAT 59.555 33.333 0.00 0.00 36.56 1.89
3229 4536 1.948104 TCCATTTCGTTATGAGGGCG 58.052 50.000 1.89 0.00 0.00 6.13
3230 4537 1.208535 TCCATTTCGTTATGAGGGCGT 59.791 47.619 1.89 0.00 0.00 5.68
3351 4693 3.063997 GTCGAGTGTATTTCATTGGGCAG 59.936 47.826 0.00 0.00 0.00 4.85
3396 4738 2.104967 TGTACCAGGGATAACACTCGG 58.895 52.381 0.00 0.00 0.00 4.63
3399 6041 0.179073 CCAGGGATAACACTCGGCAG 60.179 60.000 0.00 0.00 0.00 4.85
3431 6073 3.119849 ACTCGATAAACATGTGCTTTGCC 60.120 43.478 0.00 0.00 0.00 4.52
3435 6077 1.398958 AAACATGTGCTTTGCCGGGT 61.399 50.000 2.18 0.00 0.00 5.28
3441 6083 0.461163 GTGCTTTGCCGGGTGTTTTT 60.461 50.000 2.18 0.00 0.00 1.94
3502 6146 7.747155 TTTTATGACCCTCGACAAACAATTA 57.253 32.000 0.00 0.00 0.00 1.40
3625 6270 9.736023 GAGTACCTAAATATGAATTTTGCTTGG 57.264 33.333 0.00 0.00 36.67 3.61
3658 6303 9.640952 AGCCCATTTTTATATACATGTAGTGTT 57.359 29.630 11.91 0.00 42.29 3.32
3687 6343 8.786898 TCAATAAATAGCTAGAATGCAATCACC 58.213 33.333 4.25 0.00 34.99 4.02
3701 6357 7.624360 ATGCAATCACCGTCTTAAAATTAGA 57.376 32.000 0.00 0.00 0.00 2.10
3710 6366 8.455682 CACCGTCTTAAAATTAGAAAATGGCTA 58.544 33.333 0.00 0.00 0.00 3.93
3746 6402 3.247442 CTGGCATTAGCAACACAATGTG 58.753 45.455 12.40 12.40 44.61 3.21
3755 6412 5.021033 AGCAACACAATGTGAAATTTCCA 57.979 34.783 21.34 12.67 36.96 3.53
3782 6439 9.009675 TGTGGGAAAGATTAGGGATATTTTAGA 57.990 33.333 0.00 0.00 29.69 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.355756 CCAACCATTCGATCATGACCAC 59.644 50.000 0.00 0.00 0.00 4.16
3 4 1.949525 CCCAACCATTCGATCATGACC 59.050 52.381 0.00 0.00 0.00 4.02
4 5 1.334869 GCCCAACCATTCGATCATGAC 59.665 52.381 0.00 0.00 0.00 3.06
5 6 1.212688 AGCCCAACCATTCGATCATGA 59.787 47.619 0.00 0.00 0.00 3.07
6 7 1.335810 CAGCCCAACCATTCGATCATG 59.664 52.381 0.00 0.00 0.00 3.07
8 9 1.031571 GCAGCCCAACCATTCGATCA 61.032 55.000 0.00 0.00 0.00 2.92
9 10 1.728490 GGCAGCCCAACCATTCGATC 61.728 60.000 0.00 0.00 0.00 3.69
10 11 1.754234 GGCAGCCCAACCATTCGAT 60.754 57.895 0.00 0.00 0.00 3.59
11 12 2.361104 GGCAGCCCAACCATTCGA 60.361 61.111 0.00 0.00 0.00 3.71
12 13 1.937546 GAAGGCAGCCCAACCATTCG 61.938 60.000 8.22 0.00 0.00 3.34
13 14 0.613012 AGAAGGCAGCCCAACCATTC 60.613 55.000 8.22 4.11 0.00 2.67
14 15 0.901580 CAGAAGGCAGCCCAACCATT 60.902 55.000 8.22 0.00 0.00 3.16
15 16 1.304713 CAGAAGGCAGCCCAACCAT 60.305 57.895 8.22 0.00 0.00 3.55
16 17 2.115910 CAGAAGGCAGCCCAACCA 59.884 61.111 8.22 0.00 0.00 3.67
17 18 2.116125 ACAGAAGGCAGCCCAACC 59.884 61.111 8.22 0.00 0.00 3.77
18 19 0.250727 TACACAGAAGGCAGCCCAAC 60.251 55.000 8.22 0.00 0.00 3.77
19 20 0.036732 CTACACAGAAGGCAGCCCAA 59.963 55.000 8.22 0.00 0.00 4.12
20 21 1.679311 CTACACAGAAGGCAGCCCA 59.321 57.895 8.22 0.00 0.00 5.36
21 22 1.746991 GCTACACAGAAGGCAGCCC 60.747 63.158 8.22 0.00 0.00 5.19
22 23 0.742635 GAGCTACACAGAAGGCAGCC 60.743 60.000 1.84 1.84 32.58 4.85
23 24 0.036952 TGAGCTACACAGAAGGCAGC 60.037 55.000 0.00 0.00 0.00 5.25
24 25 2.277969 CATGAGCTACACAGAAGGCAG 58.722 52.381 0.00 0.00 0.00 4.85
25 26 1.625315 ACATGAGCTACACAGAAGGCA 59.375 47.619 0.00 0.00 0.00 4.75
26 27 2.005451 CACATGAGCTACACAGAAGGC 58.995 52.381 0.00 0.00 0.00 4.35
27 28 2.027745 ACCACATGAGCTACACAGAAGG 60.028 50.000 0.00 0.00 0.00 3.46
28 29 3.257393 GACCACATGAGCTACACAGAAG 58.743 50.000 0.00 0.00 0.00 2.85
29 30 2.632512 TGACCACATGAGCTACACAGAA 59.367 45.455 0.00 0.00 0.00 3.02
30 31 2.247358 TGACCACATGAGCTACACAGA 58.753 47.619 0.00 0.00 0.00 3.41
31 32 2.749280 TGACCACATGAGCTACACAG 57.251 50.000 0.00 0.00 0.00 3.66
32 33 2.632512 TCTTGACCACATGAGCTACACA 59.367 45.455 0.00 0.00 0.00 3.72
33 34 3.319137 TCTTGACCACATGAGCTACAC 57.681 47.619 0.00 0.00 0.00 2.90
34 35 3.515104 TGATCTTGACCACATGAGCTACA 59.485 43.478 0.00 0.00 37.44 2.74
35 36 4.118410 CTGATCTTGACCACATGAGCTAC 58.882 47.826 0.00 0.00 37.44 3.58
36 37 3.133542 CCTGATCTTGACCACATGAGCTA 59.866 47.826 0.00 0.00 37.44 3.32
37 38 2.093075 CCTGATCTTGACCACATGAGCT 60.093 50.000 0.00 0.00 37.44 4.09
38 39 2.286872 CCTGATCTTGACCACATGAGC 58.713 52.381 0.00 0.00 37.20 4.26
39 40 3.623906 ACCTGATCTTGACCACATGAG 57.376 47.619 0.00 0.00 34.54 2.90
40 41 3.307691 GGAACCTGATCTTGACCACATGA 60.308 47.826 0.00 0.00 35.30 3.07
41 42 3.012518 GGAACCTGATCTTGACCACATG 58.987 50.000 0.00 0.00 0.00 3.21
42 43 2.915604 AGGAACCTGATCTTGACCACAT 59.084 45.455 0.00 0.00 0.00 3.21
43 44 2.338809 AGGAACCTGATCTTGACCACA 58.661 47.619 0.00 0.00 0.00 4.17
44 45 3.008485 AGAAGGAACCTGATCTTGACCAC 59.992 47.826 0.00 0.00 0.00 4.16
45 46 3.251484 AGAAGGAACCTGATCTTGACCA 58.749 45.455 0.00 0.00 0.00 4.02
46 47 3.261897 TGAGAAGGAACCTGATCTTGACC 59.738 47.826 0.00 0.00 0.00 4.02
47 48 4.020662 AGTGAGAAGGAACCTGATCTTGAC 60.021 45.833 0.00 0.00 0.00 3.18
48 49 4.163427 AGTGAGAAGGAACCTGATCTTGA 58.837 43.478 0.00 0.00 0.00 3.02
49 50 4.550076 AGTGAGAAGGAACCTGATCTTG 57.450 45.455 0.00 0.00 0.00 3.02
50 51 5.072329 TGAAAGTGAGAAGGAACCTGATCTT 59.928 40.000 0.00 0.00 0.00 2.40
51 52 4.594920 TGAAAGTGAGAAGGAACCTGATCT 59.405 41.667 0.00 0.00 0.00 2.75
52 53 4.899502 TGAAAGTGAGAAGGAACCTGATC 58.100 43.478 0.00 0.00 0.00 2.92
53 54 4.982241 TGAAAGTGAGAAGGAACCTGAT 57.018 40.909 0.00 0.00 0.00 2.90
54 55 4.708177 CTTGAAAGTGAGAAGGAACCTGA 58.292 43.478 0.00 0.00 0.00 3.86
55 56 3.251972 GCTTGAAAGTGAGAAGGAACCTG 59.748 47.826 0.00 0.00 0.00 4.00
56 57 3.137360 AGCTTGAAAGTGAGAAGGAACCT 59.863 43.478 0.00 0.00 0.00 3.50
57 58 3.251972 CAGCTTGAAAGTGAGAAGGAACC 59.748 47.826 0.00 0.00 0.00 3.62
58 59 3.251972 CCAGCTTGAAAGTGAGAAGGAAC 59.748 47.826 0.00 0.00 0.00 3.62
59 60 3.117888 ACCAGCTTGAAAGTGAGAAGGAA 60.118 43.478 0.00 0.00 0.00 3.36
60 61 2.439507 ACCAGCTTGAAAGTGAGAAGGA 59.560 45.455 0.00 0.00 0.00 3.36
61 62 2.551459 CACCAGCTTGAAAGTGAGAAGG 59.449 50.000 0.00 0.00 31.79 3.46
62 63 3.470709 TCACCAGCTTGAAAGTGAGAAG 58.529 45.455 0.00 0.00 34.44 2.85
63 64 3.558931 TCACCAGCTTGAAAGTGAGAA 57.441 42.857 0.00 0.00 34.44 2.87
66 67 2.485479 GGACTCACCAGCTTGAAAGTGA 60.485 50.000 0.00 0.00 37.65 3.41
67 68 1.876156 GGACTCACCAGCTTGAAAGTG 59.124 52.381 0.00 0.00 38.79 3.16
68 69 1.202818 GGGACTCACCAGCTTGAAAGT 60.203 52.381 0.00 0.00 41.20 2.66
69 70 1.202806 TGGGACTCACCAGCTTGAAAG 60.203 52.381 0.00 0.00 41.20 2.62
70 71 0.843309 TGGGACTCACCAGCTTGAAA 59.157 50.000 0.00 0.00 41.20 2.69
71 72 0.108585 GTGGGACTCACCAGCTTGAA 59.891 55.000 0.00 0.00 42.20 2.69
72 73 1.754745 GTGGGACTCACCAGCTTGA 59.245 57.895 0.00 0.00 42.20 3.02
73 74 1.669115 CGTGGGACTCACCAGCTTG 60.669 63.158 0.00 0.00 42.20 4.01
74 75 1.407656 TTCGTGGGACTCACCAGCTT 61.408 55.000 0.00 0.00 42.20 3.74
75 76 1.837051 TTCGTGGGACTCACCAGCT 60.837 57.895 0.00 0.00 42.20 4.24
76 77 1.668151 GTTCGTGGGACTCACCAGC 60.668 63.158 0.00 0.00 42.20 4.85
77 78 0.393077 AAGTTCGTGGGACTCACCAG 59.607 55.000 0.00 0.00 42.20 4.00
78 79 0.105964 CAAGTTCGTGGGACTCACCA 59.894 55.000 0.00 0.00 43.23 4.17
79 80 0.391597 TCAAGTTCGTGGGACTCACC 59.608 55.000 0.00 0.00 43.23 4.02
80 81 2.135933 CTTCAAGTTCGTGGGACTCAC 58.864 52.381 0.00 0.00 42.74 3.51
81 82 1.070134 CCTTCAAGTTCGTGGGACTCA 59.930 52.381 0.00 0.00 0.00 3.41
82 83 1.070289 ACCTTCAAGTTCGTGGGACTC 59.930 52.381 0.00 0.00 0.00 3.36
83 84 1.129058 ACCTTCAAGTTCGTGGGACT 58.871 50.000 0.00 0.00 0.00 3.85
84 85 1.202604 TCACCTTCAAGTTCGTGGGAC 60.203 52.381 0.00 0.00 0.00 4.46
85 86 1.124780 TCACCTTCAAGTTCGTGGGA 58.875 50.000 0.00 0.00 0.00 4.37
86 87 2.076863 GATCACCTTCAAGTTCGTGGG 58.923 52.381 0.00 0.00 0.00 4.61
87 88 2.766313 TGATCACCTTCAAGTTCGTGG 58.234 47.619 0.00 0.00 0.00 4.94
88 89 5.362556 AAATGATCACCTTCAAGTTCGTG 57.637 39.130 0.00 0.00 0.00 4.35
89 90 5.530915 TGAAAATGATCACCTTCAAGTTCGT 59.469 36.000 15.57 0.00 30.68 3.85
90 91 6.000891 TGAAAATGATCACCTTCAAGTTCG 57.999 37.500 15.57 0.00 30.68 3.95
91 92 6.360681 CGTTGAAAATGATCACCTTCAAGTTC 59.639 38.462 24.27 16.11 38.19 3.01
92 93 6.039270 TCGTTGAAAATGATCACCTTCAAGTT 59.961 34.615 24.27 2.01 36.82 2.66
93 94 5.530915 TCGTTGAAAATGATCACCTTCAAGT 59.469 36.000 24.27 0.00 36.82 3.16
94 95 5.853282 GTCGTTGAAAATGATCACCTTCAAG 59.147 40.000 24.27 19.40 44.82 3.02
95 96 5.559991 CGTCGTTGAAAATGATCACCTTCAA 60.560 40.000 21.67 21.67 44.82 2.69
96 97 4.084066 CGTCGTTGAAAATGATCACCTTCA 60.084 41.667 14.43 14.43 44.82 3.02
97 98 4.151689 TCGTCGTTGAAAATGATCACCTTC 59.848 41.667 0.00 4.57 44.82 3.46
98 99 4.062293 TCGTCGTTGAAAATGATCACCTT 58.938 39.130 0.00 0.00 44.82 3.50
99 100 3.659786 TCGTCGTTGAAAATGATCACCT 58.340 40.909 0.00 0.00 44.82 4.00
100 101 3.181520 CCTCGTCGTTGAAAATGATCACC 60.182 47.826 0.00 0.00 44.82 4.02
101 102 3.432252 ACCTCGTCGTTGAAAATGATCAC 59.568 43.478 0.00 0.00 44.82 3.06
102 103 3.431912 CACCTCGTCGTTGAAAATGATCA 59.568 43.478 0.00 0.00 44.82 2.92
103 104 3.432252 ACACCTCGTCGTTGAAAATGATC 59.568 43.478 0.00 0.00 44.82 2.92
104 105 3.399330 ACACCTCGTCGTTGAAAATGAT 58.601 40.909 0.00 0.00 44.82 2.45
105 106 2.828877 ACACCTCGTCGTTGAAAATGA 58.171 42.857 0.00 0.00 40.09 2.57
106 107 3.001838 TCAACACCTCGTCGTTGAAAATG 59.998 43.478 2.65 0.00 46.29 2.32
107 108 3.199677 TCAACACCTCGTCGTTGAAAAT 58.800 40.909 2.65 0.00 46.29 1.82
108 109 2.619147 TCAACACCTCGTCGTTGAAAA 58.381 42.857 2.65 0.00 46.29 2.29
109 110 2.296831 TCAACACCTCGTCGTTGAAA 57.703 45.000 2.65 0.00 46.29 2.69
111 112 0.031585 CCTCAACACCTCGTCGTTGA 59.968 55.000 5.02 5.02 46.91 3.18
112 113 0.249322 ACCTCAACACCTCGTCGTTG 60.249 55.000 0.00 0.00 43.09 4.10
113 114 0.249322 CACCTCAACACCTCGTCGTT 60.249 55.000 0.00 0.00 0.00 3.85
114 115 1.362717 CACCTCAACACCTCGTCGT 59.637 57.895 0.00 0.00 0.00 4.34
115 116 1.372997 CCACCTCAACACCTCGTCG 60.373 63.158 0.00 0.00 0.00 5.12
116 117 0.600255 CACCACCTCAACACCTCGTC 60.600 60.000 0.00 0.00 0.00 4.20
117 118 1.445942 CACCACCTCAACACCTCGT 59.554 57.895 0.00 0.00 0.00 4.18
118 119 1.301716 CCACCACCTCAACACCTCG 60.302 63.158 0.00 0.00 0.00 4.63
119 120 1.600916 GCCACCACCTCAACACCTC 60.601 63.158 0.00 0.00 0.00 3.85
120 121 2.515901 GCCACCACCTCAACACCT 59.484 61.111 0.00 0.00 0.00 4.00
121 122 2.597510 GGCCACCACCTCAACACC 60.598 66.667 0.00 0.00 0.00 4.16
122 123 1.454847 TTGGCCACCACCTCAACAC 60.455 57.895 3.88 0.00 30.78 3.32
123 124 1.152777 CTTGGCCACCACCTCAACA 60.153 57.895 3.88 0.00 30.78 3.33
124 125 1.152756 ACTTGGCCACCACCTCAAC 60.153 57.895 3.88 0.00 30.78 3.18
125 126 1.152777 CACTTGGCCACCACCTCAA 60.153 57.895 3.88 0.00 30.78 3.02
126 127 2.515398 CACTTGGCCACCACCTCA 59.485 61.111 3.88 0.00 30.78 3.86
127 128 2.985847 GCACTTGGCCACCACCTC 60.986 66.667 3.88 0.00 36.11 3.85
128 129 2.870035 TTTGCACTTGGCCACCACCT 62.870 55.000 3.88 0.00 43.89 4.00
129 130 2.430610 TTTGCACTTGGCCACCACC 61.431 57.895 3.88 0.00 43.89 4.61
130 131 1.227234 GTTTGCACTTGGCCACCAC 60.227 57.895 3.88 0.00 43.89 4.16
131 132 2.430610 GGTTTGCACTTGGCCACCA 61.431 57.895 3.88 0.00 42.07 4.17
132 133 2.421314 GGTTTGCACTTGGCCACC 59.579 61.111 3.88 0.00 43.89 4.61
133 134 2.421314 GGGTTTGCACTTGGCCAC 59.579 61.111 3.88 0.00 43.89 5.01
134 135 2.841988 GGGGTTTGCACTTGGCCA 60.842 61.111 0.00 0.00 43.89 5.36
135 136 2.841988 TGGGGTTTGCACTTGGCC 60.842 61.111 0.00 0.00 43.89 5.36
136 137 2.421314 GTGGGGTTTGCACTTGGC 59.579 61.111 0.00 0.00 45.13 4.52
137 138 1.760086 TGGTGGGGTTTGCACTTGG 60.760 57.895 0.00 0.00 0.00 3.61
138 139 1.326213 TGTGGTGGGGTTTGCACTTG 61.326 55.000 0.00 0.00 0.00 3.16
139 140 0.616111 TTGTGGTGGGGTTTGCACTT 60.616 50.000 0.00 0.00 0.00 3.16
140 141 0.616111 TTTGTGGTGGGGTTTGCACT 60.616 50.000 0.00 0.00 0.00 4.40
141 142 0.179086 CTTTGTGGTGGGGTTTGCAC 60.179 55.000 0.00 0.00 0.00 4.57
142 143 1.965754 GCTTTGTGGTGGGGTTTGCA 61.966 55.000 0.00 0.00 0.00 4.08
143 144 1.227527 GCTTTGTGGTGGGGTTTGC 60.228 57.895 0.00 0.00 0.00 3.68
144 145 0.758123 ATGCTTTGTGGTGGGGTTTG 59.242 50.000 0.00 0.00 0.00 2.93
145 146 1.140652 CAATGCTTTGTGGTGGGGTTT 59.859 47.619 4.21 0.00 0.00 3.27
146 147 0.758123 CAATGCTTTGTGGTGGGGTT 59.242 50.000 4.21 0.00 0.00 4.11
147 148 0.105760 TCAATGCTTTGTGGTGGGGT 60.106 50.000 11.67 0.00 34.32 4.95
148 149 0.318120 GTCAATGCTTTGTGGTGGGG 59.682 55.000 11.67 0.00 34.32 4.96
149 150 1.039068 TGTCAATGCTTTGTGGTGGG 58.961 50.000 11.67 0.00 34.32 4.61
150 151 2.610976 CCATGTCAATGCTTTGTGGTGG 60.611 50.000 11.67 12.83 34.32 4.61
151 152 2.296752 TCCATGTCAATGCTTTGTGGTG 59.703 45.455 15.69 11.03 31.59 4.17
152 153 2.596346 TCCATGTCAATGCTTTGTGGT 58.404 42.857 15.69 2.03 31.59 4.16
153 154 3.517602 CATCCATGTCAATGCTTTGTGG 58.482 45.455 11.67 11.83 34.32 4.17
154 155 2.927477 GCATCCATGTCAATGCTTTGTG 59.073 45.455 11.67 3.82 43.87 3.33
155 156 3.241067 GCATCCATGTCAATGCTTTGT 57.759 42.857 11.67 0.00 43.87 2.83
160 161 2.295349 CCCTTAGCATCCATGTCAATGC 59.705 50.000 14.00 14.00 46.84 3.56
161 162 3.317149 CACCCTTAGCATCCATGTCAATG 59.683 47.826 0.00 0.00 0.00 2.82
162 163 3.559069 CACCCTTAGCATCCATGTCAAT 58.441 45.455 0.00 0.00 0.00 2.57
163 164 2.945440 GCACCCTTAGCATCCATGTCAA 60.945 50.000 0.00 0.00 0.00 3.18
164 165 1.408683 GCACCCTTAGCATCCATGTCA 60.409 52.381 0.00 0.00 0.00 3.58
165 166 1.133976 AGCACCCTTAGCATCCATGTC 60.134 52.381 0.00 0.00 0.00 3.06
166 167 0.921896 AGCACCCTTAGCATCCATGT 59.078 50.000 0.00 0.00 0.00 3.21
167 168 2.062971 AAGCACCCTTAGCATCCATG 57.937 50.000 0.00 0.00 0.00 3.66
168 169 2.762327 CAAAAGCACCCTTAGCATCCAT 59.238 45.455 0.00 0.00 0.00 3.41
169 170 2.170166 CAAAAGCACCCTTAGCATCCA 58.830 47.619 0.00 0.00 0.00 3.41
170 171 2.094545 CACAAAAGCACCCTTAGCATCC 60.095 50.000 0.00 0.00 0.00 3.51
171 172 2.558359 ACACAAAAGCACCCTTAGCATC 59.442 45.455 0.00 0.00 0.00 3.91
172 173 2.597455 ACACAAAAGCACCCTTAGCAT 58.403 42.857 0.00 0.00 0.00 3.79
173 174 2.065899 ACACAAAAGCACCCTTAGCA 57.934 45.000 0.00 0.00 0.00 3.49
174 175 4.459337 AGATAACACAAAAGCACCCTTAGC 59.541 41.667 0.00 0.00 0.00 3.09
175 176 5.940470 AGAGATAACACAAAAGCACCCTTAG 59.060 40.000 0.00 0.00 0.00 2.18
176 177 5.705441 CAGAGATAACACAAAAGCACCCTTA 59.295 40.000 0.00 0.00 0.00 2.69
177 178 4.520492 CAGAGATAACACAAAAGCACCCTT 59.480 41.667 0.00 0.00 0.00 3.95
178 179 4.074970 CAGAGATAACACAAAAGCACCCT 58.925 43.478 0.00 0.00 0.00 4.34
179 180 3.366374 GCAGAGATAACACAAAAGCACCC 60.366 47.826 0.00 0.00 0.00 4.61
180 181 3.503748 AGCAGAGATAACACAAAAGCACC 59.496 43.478 0.00 0.00 0.00 5.01
181 182 4.756084 AGCAGAGATAACACAAAAGCAC 57.244 40.909 0.00 0.00 0.00 4.40
182 183 6.409704 AGATAGCAGAGATAACACAAAAGCA 58.590 36.000 0.00 0.00 0.00 3.91
183 184 6.917217 AGATAGCAGAGATAACACAAAAGC 57.083 37.500 0.00 0.00 0.00 3.51
186 187 9.973450 GAGATAAGATAGCAGAGATAACACAAA 57.027 33.333 0.00 0.00 0.00 2.83
187 188 9.360901 AGAGATAAGATAGCAGAGATAACACAA 57.639 33.333 0.00 0.00 0.00 3.33
188 189 8.932434 AGAGATAAGATAGCAGAGATAACACA 57.068 34.615 0.00 0.00 0.00 3.72
220 221 9.416284 ACCAGAAAGTTTTGAATAAGGACTAAA 57.584 29.630 0.00 0.00 0.00 1.85
221 222 8.990163 ACCAGAAAGTTTTGAATAAGGACTAA 57.010 30.769 0.00 0.00 0.00 2.24
222 223 9.498176 GTACCAGAAAGTTTTGAATAAGGACTA 57.502 33.333 0.00 0.00 0.00 2.59
223 224 8.218488 AGTACCAGAAAGTTTTGAATAAGGACT 58.782 33.333 0.00 0.00 0.00 3.85
224 225 8.392372 AGTACCAGAAAGTTTTGAATAAGGAC 57.608 34.615 0.00 0.00 0.00 3.85
254 255 9.719355 ACAGATGTGTTCATAACATTACTAACA 57.281 29.630 0.00 0.00 44.35 2.41
258 259 9.944376 ACTAACAGATGTGTTCATAACATTACT 57.056 29.630 12.09 0.00 43.88 2.24
261 262 9.944376 AGTACTAACAGATGTGTTCATAACATT 57.056 29.630 12.09 0.00 43.88 2.71
268 269 9.990360 TCAAAATAGTACTAACAGATGTGTTCA 57.010 29.630 12.09 0.00 43.88 3.18
271 272 9.772973 TTGTCAAAATAGTACTAACAGATGTGT 57.227 29.630 6.70 0.00 39.19 3.72
285 286 9.528489 ACCATAACCATACTTTGTCAAAATAGT 57.472 29.630 0.00 0.00 0.00 2.12
296 297 9.350951 GCTAGGAATAAACCATAACCATACTTT 57.649 33.333 0.00 0.00 0.00 2.66
307 308 5.625568 ACCGTTAGCTAGGAATAAACCAT 57.374 39.130 6.05 0.00 0.00 3.55
316 317 5.361571 TCACATCATAAACCGTTAGCTAGGA 59.638 40.000 6.05 0.00 0.00 2.94
317 318 5.462398 GTCACATCATAAACCGTTAGCTAGG 59.538 44.000 0.00 0.00 0.00 3.02
318 319 6.273825 AGTCACATCATAAACCGTTAGCTAG 58.726 40.000 0.00 0.00 0.00 3.42
319 320 6.216801 AGTCACATCATAAACCGTTAGCTA 57.783 37.500 0.00 0.00 0.00 3.32
320 321 5.086104 AGTCACATCATAAACCGTTAGCT 57.914 39.130 0.00 0.00 0.00 3.32
326 327 8.826710 ACAACATAATAGTCACATCATAAACCG 58.173 33.333 0.00 0.00 0.00 4.44
335 336 8.075574 CACACAACAACAACATAATAGTCACAT 58.924 33.333 0.00 0.00 0.00 3.21
349 350 2.362397 ACCAACACACACACAACAACAA 59.638 40.909 0.00 0.00 0.00 2.83
355 356 4.010349 TGATGTTACCAACACACACACAA 58.990 39.130 0.00 0.00 45.50 3.33
374 375 2.747686 GGGTGGTGTCGTGGTGAT 59.252 61.111 0.00 0.00 0.00 3.06
380 381 4.892291 AGGGTGGGGTGGTGTCGT 62.892 66.667 0.00 0.00 0.00 4.34
381 382 4.329545 CAGGGTGGGGTGGTGTCG 62.330 72.222 0.00 0.00 0.00 4.35
382 383 3.175710 ACAGGGTGGGGTGGTGTC 61.176 66.667 0.00 0.00 0.00 3.67
383 384 3.498071 CACAGGGTGGGGTGGTGT 61.498 66.667 0.00 0.00 0.00 4.16
384 385 3.068383 AACACAGGGTGGGGTGGTG 62.068 63.158 1.07 0.00 39.31 4.17
385 386 2.698406 AACACAGGGTGGGGTGGT 60.698 61.111 1.07 0.00 39.31 4.16
386 387 2.203480 CAACACAGGGTGGGGTGG 60.203 66.667 1.07 0.00 39.31 4.61
387 388 1.827789 CACAACACAGGGTGGGGTG 60.828 63.158 1.07 0.00 37.94 4.61
388 389 2.313427 ACACAACACAGGGTGGGGT 61.313 57.895 1.07 0.00 39.31 4.95
389 390 1.827789 CACACAACACAGGGTGGGG 60.828 63.158 1.07 0.00 39.31 4.96
390 391 0.181587 TACACACAACACAGGGTGGG 59.818 55.000 1.14 0.00 43.96 4.61
391 392 2.045561 TTACACACAACACAGGGTGG 57.954 50.000 1.14 0.00 39.31 4.61
398 399 4.688511 TTGTCTGGTTTACACACAACAC 57.311 40.909 0.00 0.00 33.79 3.32
423 424 7.836842 TGCATGTTCTACTCAGATACAAAGTA 58.163 34.615 0.00 0.00 30.72 2.24
428 429 4.442052 GCCTGCATGTTCTACTCAGATACA 60.442 45.833 0.00 0.00 0.00 2.29
430 431 3.706086 TGCCTGCATGTTCTACTCAGATA 59.294 43.478 0.00 0.00 0.00 1.98
436 437 1.271543 TGCTTGCCTGCATGTTCTACT 60.272 47.619 6.84 0.00 38.12 2.57
440 441 1.012486 GCTTGCTTGCCTGCATGTTC 61.012 55.000 12.85 0.00 42.96 3.18
461 462 2.228059 GAGTAGTAGCATAGGCACCGA 58.772 52.381 0.67 0.00 44.61 4.69
493 494 1.134946 GTTTGATTGGCTTCATCCCCG 59.865 52.381 0.00 0.00 0.00 5.73
539 551 8.867097 ACCTAGACTGAGTGAATACAAGTAAAA 58.133 33.333 0.00 0.00 0.00 1.52
545 557 4.398358 CCGACCTAGACTGAGTGAATACAA 59.602 45.833 0.00 0.00 0.00 2.41
554 566 1.379977 TGGCCCGACCTAGACTGAG 60.380 63.158 0.00 0.00 40.22 3.35
555 567 1.681327 GTGGCCCGACCTAGACTGA 60.681 63.158 0.00 0.00 40.22 3.41
558 570 3.834799 CCGTGGCCCGACCTAGAC 61.835 72.222 14.30 0.00 40.22 2.59
561 573 1.829533 GTATCCGTGGCCCGACCTA 60.830 63.158 14.30 1.70 40.22 3.08
562 574 3.152400 GTATCCGTGGCCCGACCT 61.152 66.667 14.30 2.51 40.22 3.85
563 575 2.524951 TTTGTATCCGTGGCCCGACC 62.525 60.000 14.30 0.00 39.56 4.79
574 594 4.542697 TCTATTTTGGGCCCTTTGTATCC 58.457 43.478 25.70 0.00 0.00 2.59
578 598 3.790126 ACATCTATTTTGGGCCCTTTGT 58.210 40.909 25.70 11.44 0.00 2.83
584 604 5.830991 TGGTTACATACATCTATTTTGGGCC 59.169 40.000 0.00 0.00 0.00 5.80
585 605 6.952773 TGGTTACATACATCTATTTTGGGC 57.047 37.500 0.00 0.00 0.00 5.36
588 608 9.272901 CACGTTTGGTTACATACATCTATTTTG 57.727 33.333 0.00 0.00 0.00 2.44
599 619 2.702261 GAGGGCACGTTTGGTTACATA 58.298 47.619 0.00 0.00 0.00 2.29
603 623 1.301874 CCGAGGGCACGTTTGGTTA 60.302 57.895 0.00 0.00 0.00 2.85
612 632 1.227674 GATGATCACCCGAGGGCAC 60.228 63.158 8.33 0.00 39.32 5.01
615 635 2.737180 CCGATGATCACCCGAGGG 59.263 66.667 17.74 6.63 42.03 4.30
616 636 2.134287 ACCCGATGATCACCCGAGG 61.134 63.158 17.74 17.49 0.00 4.63
618 638 0.973496 TTCACCCGATGATCACCCGA 60.973 55.000 17.74 0.00 37.11 5.14
619 639 0.530650 CTTCACCCGATGATCACCCG 60.531 60.000 0.00 4.85 37.11 5.28
628 653 1.078143 GCCAGCTTCTTCACCCGAT 60.078 57.895 0.00 0.00 0.00 4.18
645 680 3.525268 ATTCCATTTTCATTGGTCGGC 57.475 42.857 0.00 0.00 35.64 5.54
648 683 4.610945 CCGCTATTCCATTTTCATTGGTC 58.389 43.478 0.00 0.00 35.64 4.02
652 687 3.068590 CCTGCCGCTATTCCATTTTCATT 59.931 43.478 0.00 0.00 0.00 2.57
732 785 1.161563 CGCTAGGTCTCTCGTCTCCC 61.162 65.000 0.00 0.00 0.00 4.30
762 835 1.621317 GAAGATTCCCGAGAGATCCCC 59.379 57.143 0.00 0.00 0.00 4.81
898 976 4.083862 GGAGAGGACACGGGGCAC 62.084 72.222 0.00 0.00 0.00 5.01
942 1020 2.140717 GTTGTTTACTCGAGTGGGTGG 58.859 52.381 28.12 0.00 0.00 4.61
1035 1113 1.524621 GCGGAGTGATGGGTGGATG 60.525 63.158 0.00 0.00 0.00 3.51
1114 1197 2.092699 GGAAGGTGAGGAAGATGGAAGG 60.093 54.545 0.00 0.00 0.00 3.46
1120 1203 0.252742 ACGGGGAAGGTGAGGAAGAT 60.253 55.000 0.00 0.00 0.00 2.40
1163 1246 3.425659 GCAAGGAAAGAACCAGGAAGAT 58.574 45.455 0.00 0.00 0.00 2.40
1204 1319 2.780094 CCATCTCCGCAGCTCTCGT 61.780 63.158 4.47 0.00 0.00 4.18
1206 1321 1.106351 TCTCCATCTCCGCAGCTCTC 61.106 60.000 0.00 0.00 0.00 3.20
1208 1323 0.319727 CATCTCCATCTCCGCAGCTC 60.320 60.000 0.00 0.00 0.00 4.09
1209 1324 1.747145 CATCTCCATCTCCGCAGCT 59.253 57.895 0.00 0.00 0.00 4.24
1332 1462 4.814041 AGGCAGAGGGGGAGCTCC 62.814 72.222 25.59 25.59 0.00 4.70
1436 1596 0.861185 CACAGGATCACACACACACG 59.139 55.000 0.00 0.00 0.00 4.49
1437 1597 2.238942 TCACAGGATCACACACACAC 57.761 50.000 0.00 0.00 0.00 3.82
1458 1618 1.364626 CCCTCGATTGCTGCAGACAC 61.365 60.000 20.43 0.00 0.00 3.67
1631 1794 2.158959 CGTCTCGGCCTTAGCGTTG 61.159 63.158 0.00 0.00 41.24 4.10
1699 1862 4.801221 CCGAAGAAAGCTGCGCGC 62.801 66.667 27.26 27.26 42.05 6.86
1712 1875 3.706373 GGCTCACTCCAGGCCGAA 61.706 66.667 0.00 0.00 36.37 4.30
1716 1879 4.106925 CTGGGGCTCACTCCAGGC 62.107 72.222 3.92 0.00 44.99 4.85
1775 1938 9.944376 AAGTAGATAAAGAGAAACACAGCAATA 57.056 29.630 0.00 0.00 0.00 1.90
1804 1967 9.709495 ACAGCATCAGCAAATTTATCTTTTAAA 57.291 25.926 0.00 0.00 45.49 1.52
1818 1985 2.949826 TGCATCACAGCATCAGCAA 58.050 47.368 0.00 0.00 45.49 3.91
1819 1986 4.726334 TGCATCACAGCATCAGCA 57.274 50.000 0.00 0.00 45.49 4.41
1825 1992 2.804212 CATCGGTAGATGCATCACAGCA 60.804 50.000 27.81 14.50 46.46 4.41
1826 1993 1.797046 CATCGGTAGATGCATCACAGC 59.203 52.381 27.81 21.32 46.46 4.40
1840 2206 2.688958 GCACCTAGTAGAGTTCATCGGT 59.311 50.000 0.00 0.00 0.00 4.69
2046 2412 3.582647 TGTCTTTCTCAGTGGCATCCTTA 59.417 43.478 0.00 0.00 0.00 2.69
2054 2420 3.459232 TGTCTGTGTCTTTCTCAGTGG 57.541 47.619 0.00 0.00 38.39 4.00
2106 2472 1.306148 GTGGCTTCCGGTTATTAGGC 58.694 55.000 0.00 5.68 0.00 3.93
2107 2473 1.578583 CGTGGCTTCCGGTTATTAGG 58.421 55.000 0.00 0.00 0.00 2.69
2108 2474 1.578583 CCGTGGCTTCCGGTTATTAG 58.421 55.000 0.00 0.00 40.59 1.73
2109 2475 3.764658 CCGTGGCTTCCGGTTATTA 57.235 52.632 0.00 0.00 40.59 0.98
2110 2476 4.629779 CCGTGGCTTCCGGTTATT 57.370 55.556 0.00 0.00 40.59 1.40
2215 2581 6.001449 TGAGGGGAATAAGTAACCAATCTG 57.999 41.667 0.00 0.00 0.00 2.90
2221 2587 7.712204 TTTTTGATGAGGGGAATAAGTAACC 57.288 36.000 0.00 0.00 0.00 2.85
2226 2592 8.534496 ACTTTGATTTTTGATGAGGGGAATAAG 58.466 33.333 0.00 0.00 0.00 1.73
2229 2595 6.940430 ACTTTGATTTTTGATGAGGGGAAT 57.060 33.333 0.00 0.00 0.00 3.01
2230 2596 6.523840 CAACTTTGATTTTTGATGAGGGGAA 58.476 36.000 0.00 0.00 0.00 3.97
2231 2597 5.511202 GCAACTTTGATTTTTGATGAGGGGA 60.511 40.000 0.00 0.00 0.00 4.81
2232 2598 4.692155 GCAACTTTGATTTTTGATGAGGGG 59.308 41.667 0.00 0.00 0.00 4.79
2233 2599 4.386652 CGCAACTTTGATTTTTGATGAGGG 59.613 41.667 0.00 0.00 0.00 4.30
2256 2650 6.426327 GGCACCAATCAAATTTTGTTGTTAC 58.574 36.000 8.89 4.95 0.00 2.50
2303 2700 1.222936 CAGCTCCCGGATCTGCTTT 59.777 57.895 0.73 0.00 33.03 3.51
2394 2791 8.560355 TTAACAGCACTAATTAAGCAAGATGA 57.440 30.769 10.99 0.00 0.00 2.92
2395 2792 9.793252 AATTAACAGCACTAATTAAGCAAGATG 57.207 29.630 10.99 4.48 29.24 2.90
2400 2797 9.443323 TGTCTAATTAACAGCACTAATTAAGCA 57.557 29.630 10.99 0.00 33.15 3.91
2406 2833 9.060347 CCATGATGTCTAATTAACAGCACTAAT 57.940 33.333 15.83 3.88 44.82 1.73
2428 2855 3.623906 AATGTGAGGTCAGACTCCATG 57.376 47.619 0.00 0.00 36.66 3.66
2429 2856 3.328931 ACAAATGTGAGGTCAGACTCCAT 59.671 43.478 0.00 0.83 36.66 3.41
2430 2857 2.705658 ACAAATGTGAGGTCAGACTCCA 59.294 45.455 0.00 0.00 36.66 3.86
2440 2867 2.037511 ACCCAATGCAACAAATGTGAGG 59.962 45.455 0.00 0.00 0.00 3.86
2645 3072 2.102109 TACTTGGTTCGCGCTTCCCA 62.102 55.000 5.56 5.14 0.00 4.37
2696 3123 1.600413 GCTTTTCCAAGTGTGGCTTCG 60.600 52.381 0.00 0.00 45.54 3.79
2709 3136 1.337823 TGCCTACTCGACTGCTTTTCC 60.338 52.381 0.00 0.00 0.00 3.13
2778 3217 3.647026 GACGACGACGACGACATG 58.353 61.111 25.15 3.03 42.66 3.21
2819 3258 6.258068 AGGTTATACGTACGTACACTAAGGAC 59.742 42.308 28.99 12.21 33.01 3.85
2831 3270 5.389725 CCAAACAACCAAGGTTATACGTACG 60.390 44.000 15.01 15.01 36.46 3.67
2832 3271 5.106594 CCCAAACAACCAAGGTTATACGTAC 60.107 44.000 3.82 0.00 36.46 3.67
2833 3272 5.002516 CCCAAACAACCAAGGTTATACGTA 58.997 41.667 3.82 0.00 36.46 3.57
2834 3273 3.822167 CCCAAACAACCAAGGTTATACGT 59.178 43.478 3.82 0.00 36.46 3.57
2835 3274 3.191791 CCCCAAACAACCAAGGTTATACG 59.808 47.826 3.82 0.00 36.46 3.06
2836 3275 4.409187 TCCCCAAACAACCAAGGTTATAC 58.591 43.478 3.82 0.00 36.46 1.47
2837 3276 4.743705 TCCCCAAACAACCAAGGTTATA 57.256 40.909 3.82 0.00 36.46 0.98
2838 3277 3.621682 TCCCCAAACAACCAAGGTTAT 57.378 42.857 3.82 0.00 36.46 1.89
2848 3287 7.675195 TGTAAGTAGTACTAGATCCCCAAACAA 59.325 37.037 1.87 0.00 33.46 2.83
2849 3288 7.184161 TGTAAGTAGTACTAGATCCCCAAACA 58.816 38.462 1.87 0.00 33.46 2.83
2853 3292 7.018349 AGCTATGTAAGTAGTACTAGATCCCCA 59.982 40.741 1.87 0.00 33.46 4.96
2856 3295 7.278424 CCGAGCTATGTAAGTAGTACTAGATCC 59.722 44.444 1.87 0.00 31.80 3.36
2857 3296 8.034215 TCCGAGCTATGTAAGTAGTACTAGATC 58.966 40.741 1.87 4.38 31.97 2.75
2858 3297 7.905265 TCCGAGCTATGTAAGTAGTACTAGAT 58.095 38.462 1.87 0.00 33.46 1.98
2860 3299 7.377398 TCTCCGAGCTATGTAAGTAGTACTAG 58.623 42.308 1.87 0.00 33.46 2.57
2862 3301 6.172136 TCTCCGAGCTATGTAAGTAGTACT 57.828 41.667 0.00 0.00 33.46 2.73
2863 3302 6.857777 TTCTCCGAGCTATGTAAGTAGTAC 57.142 41.667 0.00 0.00 0.00 2.73
2864 3303 8.997323 GTATTTCTCCGAGCTATGTAAGTAGTA 58.003 37.037 0.00 0.00 0.00 1.82
2905 3344 4.760204 GCACCTTACTGTAAAATGTGACCT 59.240 41.667 19.96 0.00 0.00 3.85
2927 3366 2.121786 CATCAGCAAATAATGTGGCGC 58.878 47.619 0.00 0.00 0.00 6.53
2965 3404 3.081061 CCACAAGGCATAACAGCAGTAA 58.919 45.455 0.00 0.00 35.83 2.24
2966 3405 2.617788 CCCACAAGGCATAACAGCAGTA 60.618 50.000 0.00 0.00 35.83 2.74
2967 3406 1.538047 CCACAAGGCATAACAGCAGT 58.462 50.000 0.00 0.00 35.83 4.40
2968 3407 0.813184 CCCACAAGGCATAACAGCAG 59.187 55.000 0.00 0.00 35.83 4.24
2991 3430 0.251165 TGGGTCACCTTAAGCTTGGC 60.251 55.000 9.86 0.00 37.76 4.52
3009 3448 4.980434 GGCAAAACTCAAGCTATATGCATG 59.020 41.667 10.16 0.00 45.94 4.06
3010 3449 4.646040 TGGCAAAACTCAAGCTATATGCAT 59.354 37.500 3.79 3.79 45.94 3.96
3011 3450 4.015764 TGGCAAAACTCAAGCTATATGCA 58.984 39.130 0.00 0.00 45.94 3.96
3012 3451 4.142403 TGTGGCAAAACTCAAGCTATATGC 60.142 41.667 0.00 0.00 43.29 3.14
3048 3487 6.459670 AAACAAACTACCCTTTACAACCTG 57.540 37.500 0.00 0.00 0.00 4.00
3050 3489 5.521010 GCAAAACAAACTACCCTTTACAACC 59.479 40.000 0.00 0.00 0.00 3.77
3068 3507 1.282875 GAGCTCCACGGTGCAAAAC 59.717 57.895 12.32 0.00 37.12 2.43
3103 3542 1.341531 CTATCGAAGGGCCTACACCAG 59.658 57.143 6.41 0.00 0.00 4.00
3177 4484 5.500645 AGCAATTAAGCGAAGGTAATTCC 57.499 39.130 0.00 0.00 37.06 3.01
3217 4524 1.393539 CACAAAGACGCCCTCATAACG 59.606 52.381 0.00 0.00 0.00 3.18
3222 4529 1.334160 TACTCACAAAGACGCCCTCA 58.666 50.000 0.00 0.00 0.00 3.86
3230 4537 5.290493 ACATGGTGTCTTACTCACAAAGA 57.710 39.130 0.00 0.00 37.52 2.52
3272 4613 4.534168 CGTAGTGATGGTAGATTGTACGG 58.466 47.826 0.00 0.00 0.00 4.02
3394 4736 0.994995 CGAGTGTCATTTCTCTGCCG 59.005 55.000 0.00 0.00 0.00 5.69
3396 4738 5.348724 TGTTTATCGAGTGTCATTTCTCTGC 59.651 40.000 0.00 0.00 0.00 4.26
3399 6041 7.176075 CACATGTTTATCGAGTGTCATTTCTC 58.824 38.462 0.00 0.00 0.00 2.87
3401 6043 5.734498 GCACATGTTTATCGAGTGTCATTTC 59.266 40.000 0.00 0.00 32.99 2.17
3407 6049 4.613622 GCAAAGCACATGTTTATCGAGTGT 60.614 41.667 0.00 0.00 32.99 3.55
3441 6083 5.182190 TGTTTGTTTGCAGAGTGTCTTACAA 59.818 36.000 0.00 0.00 0.00 2.41
3598 6243 9.438291 CAAGCAAAATTCATATTTAGGTACTCG 57.562 33.333 0.00 0.00 41.75 4.18
3662 6307 7.747799 CGGTGATTGCATTCTAGCTATTTATTG 59.252 37.037 9.81 0.00 34.99 1.90
3663 6308 7.445402 ACGGTGATTGCATTCTAGCTATTTATT 59.555 33.333 9.81 0.00 34.99 1.40
3665 6310 6.288294 ACGGTGATTGCATTCTAGCTATTTA 58.712 36.000 9.81 0.00 34.99 1.40
3666 6311 5.126067 ACGGTGATTGCATTCTAGCTATTT 58.874 37.500 9.81 0.00 34.99 1.40
3724 6380 2.231964 ACATTGTGTTGCTAATGCCAGG 59.768 45.455 0.00 0.00 37.71 4.45
3755 6412 9.813826 CTAAAATATCCCTAATCTTTCCCACAT 57.186 33.333 0.00 0.00 0.00 3.21
3790 6447 8.190122 CACTTGATGGCTTAAATATAGCAACAA 58.810 33.333 0.00 0.00 40.42 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.