Multiple sequence alignment - TraesCS2A01G115700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G115700 chr2A 100.000 3110 0 0 1 3110 66005481 66002372 0.000000e+00 5744.0
1 TraesCS2A01G115700 chr2A 92.954 1405 67 18 732 2112 65954238 65952842 0.000000e+00 2017.0
2 TraesCS2A01G115700 chr2A 84.541 621 81 5 2499 3109 44772951 44772336 4.440000e-168 601.0
3 TraesCS2A01G115700 chr2A 84.843 607 76 6 2513 3109 44771572 44770972 5.740000e-167 597.0
4 TraesCS2A01G115700 chr2A 85.986 578 36 19 46 615 65954926 65954386 7.480000e-161 577.0
5 TraesCS2A01G115700 chr2A 78.470 771 106 34 955 1686 66909636 66908887 1.700000e-122 449.0
6 TraesCS2A01G115700 chr2A 79.765 682 85 30 1036 1688 66915218 66914561 2.200000e-121 446.0
7 TraesCS2A01G115700 chr2A 97.297 111 3 0 2438 2548 66002940 66002830 4.090000e-44 189.0
8 TraesCS2A01G115700 chr2A 97.297 111 3 0 2542 2652 66003044 66002934 4.090000e-44 189.0
9 TraesCS2A01G115700 chr2A 81.250 128 22 2 201 326 738028835 738028708 5.490000e-18 102.0
10 TraesCS2A01G115700 chr2B 91.398 1395 81 20 734 2113 101543482 101542112 0.000000e+00 1875.0
11 TraesCS2A01G115700 chr2B 88.316 659 38 13 4 628 101544171 101543518 0.000000e+00 754.0
12 TraesCS2A01G115700 chr2B 86.596 567 74 2 2542 3108 67944511 67943947 2.630000e-175 625.0
13 TraesCS2A01G115700 chr2B 78.418 885 112 41 845 1688 103956347 103955501 1.290000e-138 503.0
14 TraesCS2A01G115700 chr2B 78.696 859 104 49 877 1688 103845839 103845013 1.670000e-137 499.0
15 TraesCS2A01G115700 chr2B 77.480 1008 112 62 751 1690 104052989 104052029 5.990000e-137 497.0
16 TraesCS2A01G115700 chr2B 78.016 887 118 43 845 1688 103901174 103900322 1.300000e-133 486.0
17 TraesCS2A01G115700 chr2B 88.764 356 31 4 2697 3044 67922419 67922065 7.970000e-116 427.0
18 TraesCS2A01G115700 chr2B 78.136 558 65 26 1036 1559 104019275 104018741 5.040000e-78 302.0
19 TraesCS2A01G115700 chr2B 77.218 417 45 28 877 1270 103709570 103709181 6.800000e-47 198.0
20 TraesCS2A01G115700 chr2B 88.889 144 16 0 2151 2294 519598861 519599004 8.860000e-41 178.0
21 TraesCS2A01G115700 chr2B 92.857 42 3 0 2111 2152 101977768 101977727 9.310000e-06 62.1
22 TraesCS2A01G115700 chr2B 100.000 29 0 0 710 738 101543519 101543491 2.000000e-03 54.7
23 TraesCS2A01G115700 chr2D 93.465 964 47 8 728 1681 69028894 69027937 0.000000e+00 1417.0
24 TraesCS2A01G115700 chr2D 92.089 632 36 11 4 628 69029548 69028924 0.000000e+00 878.0
25 TraesCS2A01G115700 chr2D 90.158 569 56 0 2542 3110 40828287 40827719 0.000000e+00 741.0
26 TraesCS2A01G115700 chr2D 85.085 590 75 5 2530 3109 43240468 43239882 9.610000e-165 590.0
27 TraesCS2A01G115700 chr2D 79.209 885 123 38 833 1686 67447829 67448683 2.710000e-155 558.0
28 TraesCS2A01G115700 chr2D 92.954 369 19 2 1746 2110 69027935 69027570 5.910000e-147 531.0
29 TraesCS2A01G115700 chr2D 77.311 714 83 46 1026 1688 67442688 67443373 6.380000e-92 348.0
30 TraesCS2A01G115700 chr2D 90.826 218 16 2 1 218 68811484 68811697 3.920000e-74 289.0
31 TraesCS2A01G115700 chr2D 94.186 86 5 0 627 712 564921773 564921688 7.000000e-27 132.0
32 TraesCS2A01G115700 chr2D 93.976 83 4 1 372 454 68855648 68855729 1.170000e-24 124.0
33 TraesCS2A01G115700 chr2D 74.390 328 62 16 1249 1571 68905035 68904725 1.510000e-23 121.0
34 TraesCS2A01G115700 chr7D 89.510 143 15 0 2151 2293 363148833 363148975 6.850000e-42 182.0
35 TraesCS2A01G115700 chr7D 88.356 146 17 0 2148 2293 529915464 529915609 3.190000e-40 176.0
36 TraesCS2A01G115700 chr7A 89.510 143 15 0 2151 2293 717441321 717441179 6.850000e-42 182.0
37 TraesCS2A01G115700 chr7A 88.811 143 16 0 2151 2293 16718366 16718224 3.190000e-40 176.0
38 TraesCS2A01G115700 chr7A 88.811 143 16 0 2151 2293 643187054 643186912 3.190000e-40 176.0
39 TraesCS2A01G115700 chr5A 89.510 143 15 0 2151 2293 367790241 367790099 6.850000e-42 182.0
40 TraesCS2A01G115700 chr5A 88.732 142 16 0 2147 2288 668081761 668081902 1.150000e-39 174.0
41 TraesCS2A01G115700 chr5B 88.811 143 16 0 2151 2293 262533786 262533644 3.190000e-40 176.0
42 TraesCS2A01G115700 chr4A 75.472 371 72 16 4 370 631905181 631904826 2.480000e-36 163.0
43 TraesCS2A01G115700 chr4A 89.000 100 11 0 619 718 584810957 584810858 1.170000e-24 124.0
44 TraesCS2A01G115700 chr4D 96.471 85 3 0 627 711 469582356 469582272 1.160000e-29 141.0
45 TraesCS2A01G115700 chr1A 95.402 87 4 0 626 712 12556266 12556180 4.180000e-29 139.0
46 TraesCS2A01G115700 chr3D 95.349 86 4 0 626 711 400684028 400683943 1.500000e-28 137.0
47 TraesCS2A01G115700 chr4B 94.318 88 5 0 627 714 673204474 673204561 5.410000e-28 135.0
48 TraesCS2A01G115700 chr4B 94.118 85 5 0 627 711 590440315 590440231 2.520000e-26 130.0
49 TraesCS2A01G115700 chr3B 95.294 85 4 0 627 711 284678927 284678843 5.410000e-28 135.0
50 TraesCS2A01G115700 chr6A 93.182 88 6 0 627 714 93285704 93285791 2.520000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G115700 chr2A 66002372 66005481 3109 True 2040.666667 5744 98.198 1 3110 3 chr2A.!!$R6 3109
1 TraesCS2A01G115700 chr2A 65952842 65954926 2084 True 1297.000000 2017 89.470 46 2112 2 chr2A.!!$R5 2066
2 TraesCS2A01G115700 chr2A 44770972 44772951 1979 True 599.000000 601 84.692 2499 3109 2 chr2A.!!$R4 610
3 TraesCS2A01G115700 chr2A 66908887 66909636 749 True 449.000000 449 78.470 955 1686 1 chr2A.!!$R1 731
4 TraesCS2A01G115700 chr2A 66914561 66915218 657 True 446.000000 446 79.765 1036 1688 1 chr2A.!!$R2 652
5 TraesCS2A01G115700 chr2B 101542112 101544171 2059 True 894.566667 1875 93.238 4 2113 3 chr2B.!!$R10 2109
6 TraesCS2A01G115700 chr2B 67943947 67944511 564 True 625.000000 625 86.596 2542 3108 1 chr2B.!!$R2 566
7 TraesCS2A01G115700 chr2B 103955501 103956347 846 True 503.000000 503 78.418 845 1688 1 chr2B.!!$R7 843
8 TraesCS2A01G115700 chr2B 103845013 103845839 826 True 499.000000 499 78.696 877 1688 1 chr2B.!!$R5 811
9 TraesCS2A01G115700 chr2B 104052029 104052989 960 True 497.000000 497 77.480 751 1690 1 chr2B.!!$R9 939
10 TraesCS2A01G115700 chr2B 103900322 103901174 852 True 486.000000 486 78.016 845 1688 1 chr2B.!!$R6 843
11 TraesCS2A01G115700 chr2B 104018741 104019275 534 True 302.000000 302 78.136 1036 1559 1 chr2B.!!$R8 523
12 TraesCS2A01G115700 chr2D 69027570 69029548 1978 True 942.000000 1417 92.836 4 2110 3 chr2D.!!$R5 2106
13 TraesCS2A01G115700 chr2D 40827719 40828287 568 True 741.000000 741 90.158 2542 3110 1 chr2D.!!$R1 568
14 TraesCS2A01G115700 chr2D 43239882 43240468 586 True 590.000000 590 85.085 2530 3109 1 chr2D.!!$R2 579
15 TraesCS2A01G115700 chr2D 67447829 67448683 854 False 558.000000 558 79.209 833 1686 1 chr2D.!!$F2 853
16 TraesCS2A01G115700 chr2D 67442688 67443373 685 False 348.000000 348 77.311 1026 1688 1 chr2D.!!$F1 662


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 1.281867 TGAAACACCAGCTATCAGGGG 59.718 52.381 0.00 0.0 0.0 4.79 F
118 119 1.575419 AGGTGGCCATTGATGCAAAT 58.425 45.000 9.72 0.0 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1007 1210 1.926511 AATGTGCGCAACAGCTAGCC 61.927 55.000 14.00 0.0 43.64 3.93 R
2113 2418 2.232941 ACCAAATGAAATCAGCTGCAGG 59.767 45.455 17.12 0.0 0.00 4.85 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.281867 TGAAACACCAGCTATCAGGGG 59.718 52.381 0.00 0.00 0.00 4.79
60 61 4.277515 GCACATGCCCTATCAGAAGATA 57.722 45.455 0.00 0.00 33.61 1.98
118 119 1.575419 AGGTGGCCATTGATGCAAAT 58.425 45.000 9.72 0.00 0.00 2.32
119 120 2.749600 AGGTGGCCATTGATGCAAATA 58.250 42.857 9.72 0.00 0.00 1.40
131 132 7.179694 CCATTGATGCAAATATAAGGAGGGAAT 59.820 37.037 0.00 0.00 0.00 3.01
144 145 3.075134 AGGAGGGAATCTCAGCAAGTTTT 59.925 43.478 0.00 0.00 44.19 2.43
294 304 4.503296 GGCGTCATGTCTGGTTAGGATATT 60.503 45.833 0.00 0.00 0.00 1.28
327 337 5.408880 TGTATTCGTCCCTGTAAACATCA 57.591 39.130 0.00 0.00 0.00 3.07
521 562 9.950680 TGTAAGTTCAGTTTGAGAAATGATTTC 57.049 29.630 9.82 9.82 39.34 2.17
539 582 7.149569 TGATTTCTTTTCTTAGGTGCTCATG 57.850 36.000 0.00 0.00 0.00 3.07
557 601 5.632347 GCTCATGTTTTCTGTCCTTCAATTG 59.368 40.000 0.00 0.00 0.00 2.32
631 736 9.853177 TGTTACCTACTAGTTATTACCTACTCC 57.147 37.037 0.00 0.00 0.00 3.85
632 737 9.290988 GTTACCTACTAGTTATTACCTACTCCC 57.709 40.741 0.00 0.00 0.00 4.30
633 738 7.719967 ACCTACTAGTTATTACCTACTCCCT 57.280 40.000 0.00 0.00 0.00 4.20
634 739 7.754624 ACCTACTAGTTATTACCTACTCCCTC 58.245 42.308 0.00 0.00 0.00 4.30
635 740 7.174413 CCTACTAGTTATTACCTACTCCCTCC 58.826 46.154 0.00 0.00 0.00 4.30
636 741 5.629125 ACTAGTTATTACCTACTCCCTCCG 58.371 45.833 0.00 0.00 0.00 4.63
637 742 4.533001 AGTTATTACCTACTCCCTCCGT 57.467 45.455 0.00 0.00 0.00 4.69
638 743 5.653255 AGTTATTACCTACTCCCTCCGTA 57.347 43.478 0.00 0.00 0.00 4.02
639 744 6.018433 AGTTATTACCTACTCCCTCCGTAA 57.982 41.667 0.00 0.00 0.00 3.18
640 745 6.435164 AGTTATTACCTACTCCCTCCGTAAA 58.565 40.000 0.00 0.00 0.00 2.01
641 746 6.548993 AGTTATTACCTACTCCCTCCGTAAAG 59.451 42.308 0.00 0.00 0.00 1.85
642 747 4.591321 TTACCTACTCCCTCCGTAAAGA 57.409 45.455 0.00 0.00 0.00 2.52
643 748 3.463048 ACCTACTCCCTCCGTAAAGAA 57.537 47.619 0.00 0.00 0.00 2.52
644 749 3.782992 ACCTACTCCCTCCGTAAAGAAA 58.217 45.455 0.00 0.00 0.00 2.52
645 750 4.359996 ACCTACTCCCTCCGTAAAGAAAT 58.640 43.478 0.00 0.00 0.00 2.17
646 751 5.522641 ACCTACTCCCTCCGTAAAGAAATA 58.477 41.667 0.00 0.00 0.00 1.40
647 752 6.141790 ACCTACTCCCTCCGTAAAGAAATAT 58.858 40.000 0.00 0.00 0.00 1.28
648 753 7.300658 ACCTACTCCCTCCGTAAAGAAATATA 58.699 38.462 0.00 0.00 0.00 0.86
649 754 7.786464 ACCTACTCCCTCCGTAAAGAAATATAA 59.214 37.037 0.00 0.00 0.00 0.98
650 755 8.087136 CCTACTCCCTCCGTAAAGAAATATAAC 58.913 40.741 0.00 0.00 0.00 1.89
651 756 7.427989 ACTCCCTCCGTAAAGAAATATAACA 57.572 36.000 0.00 0.00 0.00 2.41
652 757 7.498443 ACTCCCTCCGTAAAGAAATATAACAG 58.502 38.462 0.00 0.00 0.00 3.16
653 758 6.285990 TCCCTCCGTAAAGAAATATAACAGC 58.714 40.000 0.00 0.00 0.00 4.40
654 759 5.176958 CCCTCCGTAAAGAAATATAACAGCG 59.823 44.000 0.00 0.00 0.00 5.18
655 760 5.751990 CCTCCGTAAAGAAATATAACAGCGT 59.248 40.000 0.00 0.00 0.00 5.07
656 761 6.257193 CCTCCGTAAAGAAATATAACAGCGTT 59.743 38.462 0.02 0.02 0.00 4.84
657 762 7.201582 CCTCCGTAAAGAAATATAACAGCGTTT 60.202 37.037 0.00 0.00 0.00 3.60
658 763 8.700722 TCCGTAAAGAAATATAACAGCGTTTA 57.299 30.769 0.00 0.00 0.00 2.01
659 764 9.316730 TCCGTAAAGAAATATAACAGCGTTTAT 57.683 29.630 0.00 0.00 0.00 1.40
706 811 8.943909 ACGTTCTTATATTTCTTTACAGAGGG 57.056 34.615 0.00 0.00 0.00 4.30
707 812 8.755977 ACGTTCTTATATTTCTTTACAGAGGGA 58.244 33.333 0.00 0.00 0.00 4.20
708 813 9.250624 CGTTCTTATATTTCTTTACAGAGGGAG 57.749 37.037 0.00 0.00 0.00 4.30
768 931 3.807538 GCATGCAGCTGGTCCACG 61.808 66.667 17.12 0.00 41.15 4.94
915 1086 5.731591 AGCAACCTAACAGTCCTATACAAC 58.268 41.667 0.00 0.00 0.00 3.32
1032 1244 1.401530 CTGTTGCGCACATTCTGTTG 58.598 50.000 11.12 0.00 33.76 3.33
1033 1245 1.002576 CTGTTGCGCACATTCTGTTGA 60.003 47.619 11.12 0.00 33.76 3.18
1034 1246 1.403323 TGTTGCGCACATTCTGTTGAA 59.597 42.857 11.12 0.00 36.54 2.69
1056 1268 3.131046 AGAAATTTCCATTGGCATCGGAC 59.869 43.478 14.61 0.00 0.00 4.79
1115 1335 3.371097 TTGGAGCAGCCGATCGACC 62.371 63.158 18.66 7.18 40.66 4.79
1430 1702 2.645411 CGTGGGACGATACGTTCAC 58.355 57.895 0.00 15.58 46.05 3.18
1656 1949 4.155733 CGGGGCATGCTCACCGTA 62.156 66.667 28.37 0.00 41.34 4.02
1664 1957 1.317431 ATGCTCACCGTAGCGTACCA 61.317 55.000 0.00 0.00 45.85 3.25
1719 2018 2.358737 GGGTTGTGCTGGGACGAG 60.359 66.667 0.00 0.00 0.00 4.18
2002 2301 4.680237 CGGACAAGGCGGCTCACA 62.680 66.667 13.70 0.00 0.00 3.58
2114 2419 9.673454 AAGTACGTCAAACTTGAATAAAAATCC 57.327 29.630 1.45 0.00 39.21 3.01
2115 2420 9.063615 AGTACGTCAAACTTGAATAAAAATCCT 57.936 29.630 0.00 0.00 39.21 3.24
2116 2421 9.113876 GTACGTCAAACTTGAATAAAAATCCTG 57.886 33.333 0.00 0.00 39.21 3.86
2117 2422 6.640907 ACGTCAAACTTGAATAAAAATCCTGC 59.359 34.615 0.00 0.00 39.21 4.85
2118 2423 6.640499 CGTCAAACTTGAATAAAAATCCTGCA 59.360 34.615 0.00 0.00 39.21 4.41
2119 2424 7.148918 CGTCAAACTTGAATAAAAATCCTGCAG 60.149 37.037 6.78 6.78 39.21 4.41
2120 2425 6.646240 TCAAACTTGAATAAAAATCCTGCAGC 59.354 34.615 8.66 0.00 33.55 5.25
2121 2426 5.990120 ACTTGAATAAAAATCCTGCAGCT 57.010 34.783 8.66 0.00 0.00 4.24
2122 2427 5.717119 ACTTGAATAAAAATCCTGCAGCTG 58.283 37.500 10.11 10.11 0.00 4.24
2123 2428 5.477984 ACTTGAATAAAAATCCTGCAGCTGA 59.522 36.000 20.43 0.87 0.00 4.26
2124 2429 6.154021 ACTTGAATAAAAATCCTGCAGCTGAT 59.846 34.615 20.43 3.68 0.00 2.90
2125 2430 6.534475 TGAATAAAAATCCTGCAGCTGATT 57.466 33.333 20.43 10.24 32.72 2.57
2126 2431 6.938507 TGAATAAAAATCCTGCAGCTGATTT 58.061 32.000 20.43 19.36 41.63 2.17
2127 2432 7.037438 TGAATAAAAATCCTGCAGCTGATTTC 58.963 34.615 23.02 14.82 39.59 2.17
2128 2433 4.877378 AAAAATCCTGCAGCTGATTTCA 57.123 36.364 23.02 4.56 39.59 2.69
2129 2434 5.416271 AAAAATCCTGCAGCTGATTTCAT 57.584 34.783 23.02 15.72 39.59 2.57
2130 2435 5.416271 AAAATCCTGCAGCTGATTTCATT 57.584 34.783 23.02 11.20 39.59 2.57
2131 2436 5.416271 AAATCCTGCAGCTGATTTCATTT 57.584 34.783 20.43 11.04 36.69 2.32
2132 2437 3.861276 TCCTGCAGCTGATTTCATTTG 57.139 42.857 20.43 0.00 0.00 2.32
2133 2438 2.494471 TCCTGCAGCTGATTTCATTTGG 59.506 45.455 20.43 3.79 0.00 3.28
2134 2439 2.232941 CCTGCAGCTGATTTCATTTGGT 59.767 45.455 20.43 0.00 0.00 3.67
2135 2440 3.508762 CTGCAGCTGATTTCATTTGGTC 58.491 45.455 20.43 0.00 0.00 4.02
2136 2441 3.159472 TGCAGCTGATTTCATTTGGTCT 58.841 40.909 20.43 0.00 0.00 3.85
2137 2442 3.057104 TGCAGCTGATTTCATTTGGTCTG 60.057 43.478 20.43 0.00 0.00 3.51
2138 2443 3.192001 GCAGCTGATTTCATTTGGTCTGA 59.808 43.478 20.43 0.00 0.00 3.27
2139 2444 4.674623 GCAGCTGATTTCATTTGGTCTGAG 60.675 45.833 20.43 0.00 0.00 3.35
2140 2445 4.698780 CAGCTGATTTCATTTGGTCTGAGA 59.301 41.667 8.42 0.00 0.00 3.27
2141 2446 5.357314 CAGCTGATTTCATTTGGTCTGAGAT 59.643 40.000 8.42 0.00 0.00 2.75
2142 2447 5.950549 AGCTGATTTCATTTGGTCTGAGATT 59.049 36.000 0.00 0.00 0.00 2.40
2143 2448 6.436532 AGCTGATTTCATTTGGTCTGAGATTT 59.563 34.615 0.00 0.00 0.00 2.17
2144 2449 7.039223 AGCTGATTTCATTTGGTCTGAGATTTT 60.039 33.333 0.00 0.00 0.00 1.82
2145 2450 7.275123 GCTGATTTCATTTGGTCTGAGATTTTC 59.725 37.037 0.00 0.00 0.00 2.29
2146 2451 7.307694 TGATTTCATTTGGTCTGAGATTTTCG 58.692 34.615 0.00 0.00 0.00 3.46
2147 2452 6.633500 TTTCATTTGGTCTGAGATTTTCGT 57.367 33.333 0.00 0.00 0.00 3.85
2148 2453 7.737972 TTTCATTTGGTCTGAGATTTTCGTA 57.262 32.000 0.00 0.00 0.00 3.43
2149 2454 7.921786 TTCATTTGGTCTGAGATTTTCGTAT 57.078 32.000 0.00 0.00 0.00 3.06
2150 2455 7.921786 TCATTTGGTCTGAGATTTTCGTATT 57.078 32.000 0.00 0.00 0.00 1.89
2151 2456 9.443323 TTCATTTGGTCTGAGATTTTCGTATTA 57.557 29.630 0.00 0.00 0.00 0.98
2152 2457 8.879759 TCATTTGGTCTGAGATTTTCGTATTAC 58.120 33.333 0.00 0.00 0.00 1.89
2153 2458 8.883731 CATTTGGTCTGAGATTTTCGTATTACT 58.116 33.333 0.00 0.00 0.00 2.24
2154 2459 8.475331 TTTGGTCTGAGATTTTCGTATTACTC 57.525 34.615 0.00 0.00 0.00 2.59
2155 2460 6.570692 TGGTCTGAGATTTTCGTATTACTCC 58.429 40.000 0.00 0.00 0.00 3.85
2156 2461 5.984323 GGTCTGAGATTTTCGTATTACTCCC 59.016 44.000 0.00 0.00 0.00 4.30
2157 2462 6.183360 GGTCTGAGATTTTCGTATTACTCCCT 60.183 42.308 0.00 0.00 0.00 4.20
2158 2463 7.266400 GTCTGAGATTTTCGTATTACTCCCTT 58.734 38.462 0.00 0.00 0.00 3.95
2159 2464 7.435784 GTCTGAGATTTTCGTATTACTCCCTTC 59.564 40.741 0.00 0.00 0.00 3.46
2160 2465 6.270815 TGAGATTTTCGTATTACTCCCTTCG 58.729 40.000 0.00 0.00 0.00 3.79
2161 2466 6.127535 TGAGATTTTCGTATTACTCCCTTCGT 60.128 38.462 0.00 0.00 0.00 3.85
2162 2467 6.637657 AGATTTTCGTATTACTCCCTTCGTT 58.362 36.000 0.00 0.00 0.00 3.85
2163 2468 7.101700 AGATTTTCGTATTACTCCCTTCGTTT 58.898 34.615 0.00 0.00 0.00 3.60
2164 2469 6.710692 TTTTCGTATTACTCCCTTCGTTTC 57.289 37.500 0.00 0.00 0.00 2.78
2165 2470 5.649782 TTCGTATTACTCCCTTCGTTTCT 57.350 39.130 0.00 0.00 0.00 2.52
2166 2471 6.757897 TTCGTATTACTCCCTTCGTTTCTA 57.242 37.500 0.00 0.00 0.00 2.10
2167 2472 6.757897 TCGTATTACTCCCTTCGTTTCTAA 57.242 37.500 0.00 0.00 0.00 2.10
2168 2473 7.156876 TCGTATTACTCCCTTCGTTTCTAAA 57.843 36.000 0.00 0.00 0.00 1.85
2169 2474 7.775120 TCGTATTACTCCCTTCGTTTCTAAAT 58.225 34.615 0.00 0.00 0.00 1.40
2170 2475 8.902806 TCGTATTACTCCCTTCGTTTCTAAATA 58.097 33.333 0.00 0.00 0.00 1.40
2171 2476 9.688592 CGTATTACTCCCTTCGTTTCTAAATAT 57.311 33.333 0.00 0.00 0.00 1.28
2248 2553 9.690434 CTTATTTTAGAGTGTTGATTTACTCGC 57.310 33.333 0.00 0.00 46.05 5.03
2249 2554 7.907214 ATTTTAGAGTGTTGATTTACTCGCT 57.093 32.000 0.00 0.00 46.05 4.93
2250 2555 7.724305 TTTTAGAGTGTTGATTTACTCGCTT 57.276 32.000 0.00 0.00 46.05 4.68
2251 2556 7.724305 TTTAGAGTGTTGATTTACTCGCTTT 57.276 32.000 0.00 0.00 46.05 3.51
2252 2557 5.597813 AGAGTGTTGATTTACTCGCTTTG 57.402 39.130 0.00 0.00 46.05 2.77
2253 2558 4.083802 AGAGTGTTGATTTACTCGCTTTGC 60.084 41.667 0.00 0.00 46.05 3.68
2254 2559 3.815401 AGTGTTGATTTACTCGCTTTGCT 59.185 39.130 0.00 0.00 0.00 3.91
2255 2560 4.083802 AGTGTTGATTTACTCGCTTTGCTC 60.084 41.667 0.00 0.00 0.00 4.26
2256 2561 3.188460 TGTTGATTTACTCGCTTTGCTCC 59.812 43.478 0.00 0.00 0.00 4.70
2257 2562 1.999735 TGATTTACTCGCTTTGCTCCG 59.000 47.619 0.00 0.00 0.00 4.63
2258 2563 2.000447 GATTTACTCGCTTTGCTCCGT 59.000 47.619 0.00 0.00 0.00 4.69
2259 2564 2.728690 TTTACTCGCTTTGCTCCGTA 57.271 45.000 0.00 0.00 0.00 4.02
2260 2565 2.953466 TTACTCGCTTTGCTCCGTAT 57.047 45.000 0.00 0.00 0.00 3.06
2261 2566 2.203800 TACTCGCTTTGCTCCGTATG 57.796 50.000 0.00 0.00 0.00 2.39
2262 2567 0.246635 ACTCGCTTTGCTCCGTATGT 59.753 50.000 0.00 0.00 0.00 2.29
2263 2568 1.475280 ACTCGCTTTGCTCCGTATGTA 59.525 47.619 0.00 0.00 0.00 2.29
2264 2569 2.120232 CTCGCTTTGCTCCGTATGTAG 58.880 52.381 0.00 0.00 0.00 2.74
2265 2570 1.475280 TCGCTTTGCTCCGTATGTAGT 59.525 47.619 0.00 0.00 0.00 2.73
2266 2571 1.852895 CGCTTTGCTCCGTATGTAGTC 59.147 52.381 0.00 0.00 0.00 2.59
2267 2572 2.734175 CGCTTTGCTCCGTATGTAGTCA 60.734 50.000 0.00 0.00 0.00 3.41
2268 2573 2.603560 GCTTTGCTCCGTATGTAGTCAC 59.396 50.000 0.00 0.00 0.00 3.67
2269 2574 3.676324 GCTTTGCTCCGTATGTAGTCACT 60.676 47.826 0.00 0.00 0.00 3.41
2270 2575 4.495422 CTTTGCTCCGTATGTAGTCACTT 58.505 43.478 0.00 0.00 0.00 3.16
2271 2576 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2272 2577 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2273 2578 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2274 2579 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2275 2580 4.174009 CTCCGTATGTAGTCACTTGTTGG 58.826 47.826 0.00 0.00 0.00 3.77
2276 2581 3.827876 TCCGTATGTAGTCACTTGTTGGA 59.172 43.478 0.00 0.00 0.00 3.53
2277 2582 4.281435 TCCGTATGTAGTCACTTGTTGGAA 59.719 41.667 0.00 0.00 0.00 3.53
2278 2583 5.046878 TCCGTATGTAGTCACTTGTTGGAAT 60.047 40.000 0.00 0.00 0.00 3.01
2279 2584 5.291128 CCGTATGTAGTCACTTGTTGGAATC 59.709 44.000 0.00 0.00 0.00 2.52
2280 2585 6.100004 CGTATGTAGTCACTTGTTGGAATCT 58.900 40.000 0.00 0.00 0.00 2.40
2281 2586 6.253727 CGTATGTAGTCACTTGTTGGAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
2282 2587 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
2283 2588 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
2284 2589 7.297936 TGTAGTCACTTGTTGGAATCTCTAA 57.702 36.000 0.00 0.00 0.00 2.10
2285 2590 7.732025 TGTAGTCACTTGTTGGAATCTCTAAA 58.268 34.615 0.00 0.00 0.00 1.85
2286 2591 8.208224 TGTAGTCACTTGTTGGAATCTCTAAAA 58.792 33.333 0.00 0.00 0.00 1.52
2287 2592 9.052759 GTAGTCACTTGTTGGAATCTCTAAAAA 57.947 33.333 0.00 0.00 0.00 1.94
2328 2633 9.950680 AAAGTAATAAATATCTGATTGCAACCG 57.049 29.630 0.00 0.00 0.00 4.44
2329 2634 7.584987 AGTAATAAATATCTGATTGCAACCGC 58.415 34.615 0.00 0.00 39.24 5.68
2339 2644 4.319249 GCAACCGCAAAACTCCAC 57.681 55.556 0.00 0.00 38.36 4.02
2340 2645 1.435515 GCAACCGCAAAACTCCACA 59.564 52.632 0.00 0.00 38.36 4.17
2341 2646 0.179124 GCAACCGCAAAACTCCACAA 60.179 50.000 0.00 0.00 38.36 3.33
2342 2647 1.737363 GCAACCGCAAAACTCCACAAA 60.737 47.619 0.00 0.00 38.36 2.83
2343 2648 2.820330 CAACCGCAAAACTCCACAAAT 58.180 42.857 0.00 0.00 0.00 2.32
2344 2649 3.194062 CAACCGCAAAACTCCACAAATT 58.806 40.909 0.00 0.00 0.00 1.82
2345 2650 3.092334 ACCGCAAAACTCCACAAATTC 57.908 42.857 0.00 0.00 0.00 2.17
2346 2651 2.693074 ACCGCAAAACTCCACAAATTCT 59.307 40.909 0.00 0.00 0.00 2.40
2347 2652 3.052036 CCGCAAAACTCCACAAATTCTG 58.948 45.455 0.00 0.00 0.00 3.02
2348 2653 3.243367 CCGCAAAACTCCACAAATTCTGA 60.243 43.478 0.00 0.00 0.00 3.27
2349 2654 4.358851 CGCAAAACTCCACAAATTCTGAA 58.641 39.130 0.00 0.00 0.00 3.02
2350 2655 4.442073 CGCAAAACTCCACAAATTCTGAAG 59.558 41.667 0.00 0.00 0.00 3.02
2351 2656 4.746611 GCAAAACTCCACAAATTCTGAAGG 59.253 41.667 0.00 0.00 0.00 3.46
2352 2657 5.291971 CAAAACTCCACAAATTCTGAAGGG 58.708 41.667 0.00 0.00 0.00 3.95
2353 2658 3.884037 ACTCCACAAATTCTGAAGGGT 57.116 42.857 0.00 0.00 0.00 4.34
2354 2659 4.184649 ACTCCACAAATTCTGAAGGGTT 57.815 40.909 0.00 0.00 0.00 4.11
2355 2660 3.891366 ACTCCACAAATTCTGAAGGGTTG 59.109 43.478 0.00 3.40 0.00 3.77
2356 2661 3.891366 CTCCACAAATTCTGAAGGGTTGT 59.109 43.478 9.71 9.71 32.78 3.32
2357 2662 5.055265 TCCACAAATTCTGAAGGGTTGTA 57.945 39.130 13.31 1.81 31.44 2.41
2358 2663 5.070001 TCCACAAATTCTGAAGGGTTGTAG 58.930 41.667 13.31 8.88 31.44 2.74
2359 2664 4.827284 CCACAAATTCTGAAGGGTTGTAGT 59.173 41.667 13.31 0.00 31.44 2.73
2360 2665 5.278463 CCACAAATTCTGAAGGGTTGTAGTG 60.278 44.000 13.31 6.32 31.44 2.74
2361 2666 5.299279 CACAAATTCTGAAGGGTTGTAGTGT 59.701 40.000 13.31 0.00 31.44 3.55
2362 2667 5.891551 ACAAATTCTGAAGGGTTGTAGTGTT 59.108 36.000 12.49 0.00 30.88 3.32
2363 2668 6.183360 ACAAATTCTGAAGGGTTGTAGTGTTG 60.183 38.462 12.49 0.00 30.88 3.33
2364 2669 3.485463 TCTGAAGGGTTGTAGTGTTGG 57.515 47.619 0.00 0.00 0.00 3.77
2365 2670 2.775384 TCTGAAGGGTTGTAGTGTTGGT 59.225 45.455 0.00 0.00 0.00 3.67
2366 2671 3.201266 TCTGAAGGGTTGTAGTGTTGGTT 59.799 43.478 0.00 0.00 0.00 3.67
2367 2672 3.951680 CTGAAGGGTTGTAGTGTTGGTTT 59.048 43.478 0.00 0.00 0.00 3.27
2368 2673 4.345854 TGAAGGGTTGTAGTGTTGGTTTT 58.654 39.130 0.00 0.00 0.00 2.43
2369 2674 4.158764 TGAAGGGTTGTAGTGTTGGTTTTG 59.841 41.667 0.00 0.00 0.00 2.44
2370 2675 2.429250 AGGGTTGTAGTGTTGGTTTTGC 59.571 45.455 0.00 0.00 0.00 3.68
2371 2676 2.166664 GGGTTGTAGTGTTGGTTTTGCA 59.833 45.455 0.00 0.00 0.00 4.08
2372 2677 3.181470 GGGTTGTAGTGTTGGTTTTGCAT 60.181 43.478 0.00 0.00 0.00 3.96
2373 2678 4.048504 GGTTGTAGTGTTGGTTTTGCATC 58.951 43.478 0.00 0.00 0.00 3.91
2374 2679 4.440802 GGTTGTAGTGTTGGTTTTGCATCA 60.441 41.667 0.00 0.00 0.00 3.07
2375 2680 4.991153 TGTAGTGTTGGTTTTGCATCAA 57.009 36.364 0.00 0.00 0.00 2.57
2376 2681 5.528043 TGTAGTGTTGGTTTTGCATCAAT 57.472 34.783 0.00 0.00 0.00 2.57
2377 2682 5.911752 TGTAGTGTTGGTTTTGCATCAATT 58.088 33.333 0.00 0.00 0.00 2.32
2378 2683 6.344500 TGTAGTGTTGGTTTTGCATCAATTT 58.656 32.000 0.00 0.00 0.00 1.82
2379 2684 6.820656 TGTAGTGTTGGTTTTGCATCAATTTT 59.179 30.769 0.00 0.00 0.00 1.82
2380 2685 6.756299 AGTGTTGGTTTTGCATCAATTTTT 57.244 29.167 0.00 0.00 0.00 1.94
2401 2706 3.636282 TTTTTGGCTTAAGAGTTCGCC 57.364 42.857 6.67 0.00 42.78 5.54
2402 2707 1.530323 TTTGGCTTAAGAGTTCGCCC 58.470 50.000 6.67 0.00 41.80 6.13
2403 2708 0.322187 TTGGCTTAAGAGTTCGCCCC 60.322 55.000 6.67 0.00 41.80 5.80
2404 2709 1.298667 GGCTTAAGAGTTCGCCCCA 59.701 57.895 6.67 0.00 36.56 4.96
2405 2710 0.107165 GGCTTAAGAGTTCGCCCCAT 60.107 55.000 6.67 0.00 36.56 4.00
2406 2711 1.682087 GGCTTAAGAGTTCGCCCCATT 60.682 52.381 6.67 0.00 36.56 3.16
2407 2712 2.092323 GCTTAAGAGTTCGCCCCATTT 58.908 47.619 6.67 0.00 0.00 2.32
2408 2713 2.492088 GCTTAAGAGTTCGCCCCATTTT 59.508 45.455 6.67 0.00 0.00 1.82
2409 2714 3.673323 GCTTAAGAGTTCGCCCCATTTTG 60.673 47.826 6.67 0.00 0.00 2.44
2410 2715 2.286365 AAGAGTTCGCCCCATTTTGA 57.714 45.000 0.00 0.00 0.00 2.69
2411 2716 2.286365 AGAGTTCGCCCCATTTTGAA 57.714 45.000 0.00 0.00 0.00 2.69
2412 2717 2.593026 AGAGTTCGCCCCATTTTGAAA 58.407 42.857 0.00 0.00 0.00 2.69
2413 2718 2.962421 AGAGTTCGCCCCATTTTGAAAA 59.038 40.909 0.00 0.00 0.00 2.29
2414 2719 3.386402 AGAGTTCGCCCCATTTTGAAAAA 59.614 39.130 0.00 0.00 0.00 1.94
2415 2720 3.727726 AGTTCGCCCCATTTTGAAAAAG 58.272 40.909 0.00 0.00 0.00 2.27
2416 2721 3.133901 AGTTCGCCCCATTTTGAAAAAGT 59.866 39.130 0.00 0.00 0.00 2.66
2417 2722 3.828875 TCGCCCCATTTTGAAAAAGTT 57.171 38.095 0.00 0.00 0.00 2.66
2418 2723 3.723260 TCGCCCCATTTTGAAAAAGTTC 58.277 40.909 0.00 0.00 0.00 3.01
2419 2724 2.805671 CGCCCCATTTTGAAAAAGTTCC 59.194 45.455 0.00 0.00 32.28 3.62
2420 2725 2.805671 GCCCCATTTTGAAAAAGTTCCG 59.194 45.455 0.00 0.00 32.28 4.30
2421 2726 3.742954 GCCCCATTTTGAAAAAGTTCCGT 60.743 43.478 0.00 0.00 32.28 4.69
2422 2727 4.055360 CCCCATTTTGAAAAAGTTCCGTC 58.945 43.478 0.00 0.00 32.28 4.79
2423 2728 4.055360 CCCATTTTGAAAAAGTTCCGTCC 58.945 43.478 0.00 0.00 32.28 4.79
2424 2729 4.202212 CCCATTTTGAAAAAGTTCCGTCCT 60.202 41.667 0.00 0.00 32.28 3.85
2425 2730 5.356426 CCATTTTGAAAAAGTTCCGTCCTT 58.644 37.500 0.00 0.00 32.28 3.36
2426 2731 5.462068 CCATTTTGAAAAAGTTCCGTCCTTC 59.538 40.000 0.00 0.00 32.28 3.46
2427 2732 3.955771 TTGAAAAAGTTCCGTCCTTCG 57.044 42.857 0.00 0.00 39.52 3.79
2428 2733 2.908916 TGAAAAAGTTCCGTCCTTCGT 58.091 42.857 0.00 0.00 37.94 3.85
2429 2734 2.867975 TGAAAAAGTTCCGTCCTTCGTC 59.132 45.455 0.00 0.00 37.94 4.20
2430 2735 2.607631 AAAAGTTCCGTCCTTCGTCA 57.392 45.000 0.00 0.00 37.94 4.35
2431 2736 1.861971 AAAGTTCCGTCCTTCGTCAC 58.138 50.000 0.00 0.00 37.94 3.67
2432 2737 1.038280 AAGTTCCGTCCTTCGTCACT 58.962 50.000 0.00 0.00 37.94 3.41
2433 2738 0.314302 AGTTCCGTCCTTCGTCACTG 59.686 55.000 0.00 0.00 37.94 3.66
2434 2739 0.666577 GTTCCGTCCTTCGTCACTGG 60.667 60.000 0.00 0.00 37.94 4.00
2435 2740 2.430382 TTCCGTCCTTCGTCACTGGC 62.430 60.000 0.00 0.00 37.94 4.85
2436 2741 2.432628 CGTCCTTCGTCACTGGCC 60.433 66.667 0.00 0.00 34.52 5.36
2437 2742 2.741092 GTCCTTCGTCACTGGCCA 59.259 61.111 4.71 4.71 0.00 5.36
2438 2743 1.668151 GTCCTTCGTCACTGGCCAC 60.668 63.158 0.00 0.00 0.00 5.01
2439 2744 2.738521 CCTTCGTCACTGGCCACG 60.739 66.667 0.00 3.68 37.36 4.94
2440 2745 2.029073 CTTCGTCACTGGCCACGT 59.971 61.111 0.00 0.75 37.30 4.49
2441 2746 2.279851 TTCGTCACTGGCCACGTG 60.280 61.111 22.21 22.21 37.30 4.49
2442 2747 3.800685 TTCGTCACTGGCCACGTGG 62.801 63.158 30.66 30.66 37.30 4.94
2443 2748 4.293648 CGTCACTGGCCACGTGGA 62.294 66.667 38.30 17.53 37.39 4.02
2444 2749 2.110213 GTCACTGGCCACGTGGAA 59.890 61.111 38.30 23.07 37.39 3.53
2445 2750 1.961277 GTCACTGGCCACGTGGAAG 60.961 63.158 38.30 31.80 37.39 3.46
2446 2751 2.669569 CACTGGCCACGTGGAAGG 60.670 66.667 38.30 25.40 37.39 3.46
2451 2756 2.125106 GCCACGTGGAAGGCCTAG 60.125 66.667 38.30 8.59 45.18 3.02
2452 2757 2.656069 GCCACGTGGAAGGCCTAGA 61.656 63.158 38.30 0.00 45.18 2.43
2453 2758 1.517832 CCACGTGGAAGGCCTAGAG 59.482 63.158 31.31 0.00 37.39 2.43
2454 2759 1.153549 CACGTGGAAGGCCTAGAGC 60.154 63.158 5.16 0.00 42.60 4.09
2455 2760 1.305381 ACGTGGAAGGCCTAGAGCT 60.305 57.895 5.16 0.00 43.05 4.09
2456 2761 1.142748 CGTGGAAGGCCTAGAGCTG 59.857 63.158 5.16 0.00 43.05 4.24
2457 2762 1.323271 CGTGGAAGGCCTAGAGCTGA 61.323 60.000 5.16 0.00 43.05 4.26
2458 2763 0.176910 GTGGAAGGCCTAGAGCTGAC 59.823 60.000 5.16 0.00 43.05 3.51
2459 2764 1.323271 TGGAAGGCCTAGAGCTGACG 61.323 60.000 5.16 0.00 43.05 4.35
2460 2765 1.439644 GAAGGCCTAGAGCTGACGG 59.560 63.158 5.16 0.00 43.05 4.79
2461 2766 2.636778 GAAGGCCTAGAGCTGACGGC 62.637 65.000 5.16 0.00 43.05 5.68
2463 2768 3.151022 GCCTAGAGCTGACGGCCT 61.151 66.667 0.00 2.61 43.05 5.19
2464 2769 2.726351 GCCTAGAGCTGACGGCCTT 61.726 63.158 0.00 0.00 43.05 4.35
2465 2770 1.142748 CCTAGAGCTGACGGCCTTG 59.857 63.158 0.00 1.38 43.05 3.61
2466 2771 1.142748 CTAGAGCTGACGGCCTTGG 59.857 63.158 0.00 0.00 43.05 3.61
2467 2772 2.303549 CTAGAGCTGACGGCCTTGGG 62.304 65.000 0.00 0.00 43.05 4.12
2468 2773 4.785453 GAGCTGACGGCCTTGGGG 62.785 72.222 0.00 0.00 43.05 4.96
2494 2799 4.856801 GACCGCGGACCATGGCAT 62.857 66.667 35.90 5.18 0.00 4.40
2495 2800 4.424711 ACCGCGGACCATGGCATT 62.425 61.111 35.90 0.68 0.00 3.56
2496 2801 2.203139 CCGCGGACCATGGCATTA 60.203 61.111 24.07 0.00 0.00 1.90
2497 2802 2.253758 CCGCGGACCATGGCATTAG 61.254 63.158 24.07 0.47 0.00 1.73
2505 2810 1.922447 ACCATGGCATTAGGACCTGAA 59.078 47.619 13.04 0.00 0.00 3.02
2509 2814 1.213296 GGCATTAGGACCTGAAGGGA 58.787 55.000 3.53 0.00 40.27 4.20
2510 2815 1.134068 GGCATTAGGACCTGAAGGGAC 60.134 57.143 3.53 0.00 40.27 4.46
2511 2816 1.559682 GCATTAGGACCTGAAGGGACA 59.440 52.381 3.53 0.00 40.27 4.02
2520 2825 0.674581 CTGAAGGGACAATGCAGCGA 60.675 55.000 0.00 0.00 0.00 4.93
2521 2826 0.955428 TGAAGGGACAATGCAGCGAC 60.955 55.000 0.00 0.00 0.00 5.19
2523 2828 0.537143 AAGGGACAATGCAGCGACAA 60.537 50.000 0.00 0.00 0.00 3.18
2525 2830 1.514678 GGGACAATGCAGCGACAACA 61.515 55.000 0.00 0.00 0.00 3.33
2548 2855 1.526575 GGGTCGGTGTAGACGTGGAA 61.527 60.000 0.00 0.00 41.81 3.53
2554 2861 1.180029 GTGTAGACGTGGAAGGCCTA 58.820 55.000 5.16 0.00 34.31 3.93
2559 2866 1.305381 ACGTGGAAGGCCTAGAGCT 60.305 57.895 5.16 0.00 43.05 4.09
2617 2924 3.372025 GCATTAGGACCTGAAGGGACAAT 60.372 47.826 3.53 0.00 40.27 2.71
2664 2971 0.041238 ACGTGGAGAGATCCTTGGGA 59.959 55.000 0.00 0.00 35.55 4.37
2687 2995 1.134694 GACGGCTGCGATCCAAAAC 59.865 57.895 0.00 0.00 0.00 2.43
2690 2998 1.873165 GGCTGCGATCCAAAACGAA 59.127 52.632 0.00 0.00 0.00 3.85
2693 3001 1.201965 GCTGCGATCCAAAACGAAGAG 60.202 52.381 0.00 0.00 37.35 2.85
2695 3003 1.270625 TGCGATCCAAAACGAAGAGGT 60.271 47.619 0.00 0.00 0.00 3.85
2725 3033 3.074412 CCCGTTGCTTAATCAGTGAAGT 58.926 45.455 0.00 0.00 0.00 3.01
2771 3079 3.255379 GGAATCGTGGACGCTCGC 61.255 66.667 0.00 0.00 39.60 5.03
2783 3091 0.179076 ACGCTCGCATGATCAATCCA 60.179 50.000 0.00 0.00 0.00 3.41
2845 3154 4.961511 GCAGCCGGACGTGACACA 62.962 66.667 5.05 0.00 0.00 3.72
2867 3176 2.412591 AGCTAGGCCATCTGGTACATT 58.587 47.619 5.01 0.00 38.20 2.71
2873 3182 1.949525 GCCATCTGGTACATTCGCAAT 59.050 47.619 0.00 0.00 38.20 3.56
2929 3238 1.747355 GCACTTACATGCAATCAGGCT 59.253 47.619 0.00 0.00 45.39 4.58
3078 3395 4.789075 GCCAACGTAGGAGCGCGA 62.789 66.667 12.10 0.00 34.88 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 1.126488 TCAATGGCCACCTTGCAAAA 58.874 45.000 8.16 0.00 0.00 2.44
118 119 5.219739 ACTTGCTGAGATTCCCTCCTTATA 58.780 41.667 0.00 0.00 41.25 0.98
119 120 4.043596 ACTTGCTGAGATTCCCTCCTTAT 58.956 43.478 0.00 0.00 41.25 1.73
131 132 2.057137 AGCACCAAAACTTGCTGAGA 57.943 45.000 0.00 0.00 36.15 3.27
144 145 7.926555 GCTACTATTTCTTGAACTATAGCACCA 59.073 37.037 0.00 0.00 34.13 4.17
294 304 2.100252 GGACGAATACAAGATCACCGGA 59.900 50.000 9.46 0.00 0.00 5.14
327 337 5.511234 AGCTTTATTACTCCGTACGTCAT 57.489 39.130 15.21 0.95 0.00 3.06
521 562 6.860023 CAGAAAACATGAGCACCTAAGAAAAG 59.140 38.462 0.00 0.00 0.00 2.27
539 582 8.424274 AAACATTCAATTGAAGGACAGAAAAC 57.576 30.769 32.81 0.00 37.99 2.43
626 731 8.537728 TGTTATATTTCTTTACGGAGGGAGTA 57.462 34.615 0.00 0.00 0.00 2.59
627 732 7.427989 TGTTATATTTCTTTACGGAGGGAGT 57.572 36.000 0.00 0.00 0.00 3.85
628 733 6.424207 GCTGTTATATTTCTTTACGGAGGGAG 59.576 42.308 0.00 0.00 0.00 4.30
629 734 6.285990 GCTGTTATATTTCTTTACGGAGGGA 58.714 40.000 0.00 0.00 0.00 4.20
630 735 5.176958 CGCTGTTATATTTCTTTACGGAGGG 59.823 44.000 0.00 0.00 0.00 4.30
631 736 5.751990 ACGCTGTTATATTTCTTTACGGAGG 59.248 40.000 0.00 0.00 0.00 4.30
632 737 6.823678 ACGCTGTTATATTTCTTTACGGAG 57.176 37.500 0.00 0.00 0.00 4.63
633 738 7.599630 AAACGCTGTTATATTTCTTTACGGA 57.400 32.000 0.00 0.00 0.00 4.69
680 785 9.379791 CCCTCTGTAAAGAAATATAAGAACGTT 57.620 33.333 0.00 0.00 0.00 3.99
681 786 8.755977 TCCCTCTGTAAAGAAATATAAGAACGT 58.244 33.333 0.00 0.00 0.00 3.99
682 787 9.250624 CTCCCTCTGTAAAGAAATATAAGAACG 57.749 37.037 0.00 0.00 0.00 3.95
915 1086 2.810274 CCTGTGGTTGTGAATCAGTGAG 59.190 50.000 0.00 0.00 0.00 3.51
1007 1210 1.926511 AATGTGCGCAACAGCTAGCC 61.927 55.000 14.00 0.00 43.64 3.93
1032 1244 4.114794 CCGATGCCAATGGAAATTTCTTC 58.885 43.478 17.42 3.03 0.00 2.87
1033 1245 3.768757 TCCGATGCCAATGGAAATTTCTT 59.231 39.130 17.42 2.65 0.00 2.52
1034 1246 3.131046 GTCCGATGCCAATGGAAATTTCT 59.869 43.478 17.42 0.00 32.60 2.52
1473 1745 2.283966 AGCACGTGGAGGTAGGCT 60.284 61.111 18.88 1.79 0.00 4.58
1599 1892 2.747460 CGGACCGGGTACGACTCA 60.747 66.667 27.60 0.00 43.34 3.41
1664 1957 4.096003 CCATCACGGGGCCGAAGT 62.096 66.667 0.00 0.00 42.83 3.01
2002 2301 3.075186 GGGCTTGTACCCGGAGTT 58.925 61.111 0.73 0.00 40.98 3.01
2113 2418 2.232941 ACCAAATGAAATCAGCTGCAGG 59.767 45.455 17.12 0.00 0.00 4.85
2114 2419 3.192844 AGACCAAATGAAATCAGCTGCAG 59.807 43.478 10.11 10.11 0.00 4.41
2115 2420 3.057104 CAGACCAAATGAAATCAGCTGCA 60.057 43.478 9.47 0.77 0.00 4.41
2116 2421 3.192001 TCAGACCAAATGAAATCAGCTGC 59.808 43.478 9.47 0.00 0.00 5.25
2117 2422 4.698780 TCTCAGACCAAATGAAATCAGCTG 59.301 41.667 7.63 7.63 0.00 4.24
2118 2423 4.914983 TCTCAGACCAAATGAAATCAGCT 58.085 39.130 0.00 0.00 0.00 4.24
2119 2424 5.831702 ATCTCAGACCAAATGAAATCAGC 57.168 39.130 0.00 0.00 0.00 4.26
2120 2425 7.484007 CGAAAATCTCAGACCAAATGAAATCAG 59.516 37.037 0.00 0.00 0.00 2.90
2121 2426 7.040478 ACGAAAATCTCAGACCAAATGAAATCA 60.040 33.333 0.00 0.00 0.00 2.57
2122 2427 7.308435 ACGAAAATCTCAGACCAAATGAAATC 58.692 34.615 0.00 0.00 0.00 2.17
2123 2428 7.219484 ACGAAAATCTCAGACCAAATGAAAT 57.781 32.000 0.00 0.00 0.00 2.17
2124 2429 6.633500 ACGAAAATCTCAGACCAAATGAAA 57.367 33.333 0.00 0.00 0.00 2.69
2125 2430 7.921786 ATACGAAAATCTCAGACCAAATGAA 57.078 32.000 0.00 0.00 0.00 2.57
2126 2431 7.921786 AATACGAAAATCTCAGACCAAATGA 57.078 32.000 0.00 0.00 0.00 2.57
2127 2432 8.883731 AGTAATACGAAAATCTCAGACCAAATG 58.116 33.333 0.00 0.00 0.00 2.32
2128 2433 9.099454 GAGTAATACGAAAATCTCAGACCAAAT 57.901 33.333 0.00 0.00 0.00 2.32
2129 2434 7.548075 GGAGTAATACGAAAATCTCAGACCAAA 59.452 37.037 0.00 0.00 0.00 3.28
2130 2435 7.039882 GGAGTAATACGAAAATCTCAGACCAA 58.960 38.462 0.00 0.00 0.00 3.67
2131 2436 6.406624 GGGAGTAATACGAAAATCTCAGACCA 60.407 42.308 0.00 0.00 0.00 4.02
2132 2437 5.984323 GGGAGTAATACGAAAATCTCAGACC 59.016 44.000 0.00 0.00 0.00 3.85
2133 2438 6.807789 AGGGAGTAATACGAAAATCTCAGAC 58.192 40.000 0.00 0.00 0.00 3.51
2134 2439 7.419711 AAGGGAGTAATACGAAAATCTCAGA 57.580 36.000 0.00 0.00 0.00 3.27
2135 2440 6.418226 CGAAGGGAGTAATACGAAAATCTCAG 59.582 42.308 0.00 0.00 0.00 3.35
2136 2441 6.127535 ACGAAGGGAGTAATACGAAAATCTCA 60.128 38.462 0.00 0.00 0.00 3.27
2137 2442 6.271566 ACGAAGGGAGTAATACGAAAATCTC 58.728 40.000 0.00 0.00 0.00 2.75
2138 2443 6.218108 ACGAAGGGAGTAATACGAAAATCT 57.782 37.500 0.00 0.00 0.00 2.40
2139 2444 6.898912 AACGAAGGGAGTAATACGAAAATC 57.101 37.500 0.00 0.00 0.00 2.17
2140 2445 7.101700 AGAAACGAAGGGAGTAATACGAAAAT 58.898 34.615 0.00 0.00 0.00 1.82
2141 2446 6.458210 AGAAACGAAGGGAGTAATACGAAAA 58.542 36.000 0.00 0.00 0.00 2.29
2142 2447 6.029346 AGAAACGAAGGGAGTAATACGAAA 57.971 37.500 0.00 0.00 0.00 3.46
2143 2448 5.649782 AGAAACGAAGGGAGTAATACGAA 57.350 39.130 0.00 0.00 0.00 3.85
2144 2449 6.757897 TTAGAAACGAAGGGAGTAATACGA 57.242 37.500 0.00 0.00 0.00 3.43
2145 2450 7.998753 ATTTAGAAACGAAGGGAGTAATACG 57.001 36.000 0.00 0.00 0.00 3.06
2222 2527 9.690434 GCGAGTAAATCAACACTCTAAAATAAG 57.310 33.333 0.00 0.00 39.23 1.73
2223 2528 9.431887 AGCGAGTAAATCAACACTCTAAAATAA 57.568 29.630 0.00 0.00 39.23 1.40
2224 2529 8.997621 AGCGAGTAAATCAACACTCTAAAATA 57.002 30.769 0.00 0.00 39.23 1.40
2225 2530 7.907214 AGCGAGTAAATCAACACTCTAAAAT 57.093 32.000 0.00 0.00 39.23 1.82
2226 2531 7.724305 AAGCGAGTAAATCAACACTCTAAAA 57.276 32.000 0.00 0.00 39.23 1.52
2227 2532 7.572759 CAAAGCGAGTAAATCAACACTCTAAA 58.427 34.615 0.00 0.00 39.23 1.85
2228 2533 6.347402 GCAAAGCGAGTAAATCAACACTCTAA 60.347 38.462 0.00 0.00 39.23 2.10
2229 2534 5.120208 GCAAAGCGAGTAAATCAACACTCTA 59.880 40.000 0.00 0.00 39.23 2.43
2230 2535 4.083802 GCAAAGCGAGTAAATCAACACTCT 60.084 41.667 0.00 0.00 39.23 3.24
2231 2536 4.083802 AGCAAAGCGAGTAAATCAACACTC 60.084 41.667 0.00 0.00 38.24 3.51
2232 2537 3.815401 AGCAAAGCGAGTAAATCAACACT 59.185 39.130 0.00 0.00 0.00 3.55
2233 2538 4.147219 AGCAAAGCGAGTAAATCAACAC 57.853 40.909 0.00 0.00 0.00 3.32
2234 2539 3.188460 GGAGCAAAGCGAGTAAATCAACA 59.812 43.478 0.00 0.00 0.00 3.33
2235 2540 3.725010 CGGAGCAAAGCGAGTAAATCAAC 60.725 47.826 0.00 0.00 0.00 3.18
2236 2541 2.415168 CGGAGCAAAGCGAGTAAATCAA 59.585 45.455 0.00 0.00 0.00 2.57
2237 2542 1.999735 CGGAGCAAAGCGAGTAAATCA 59.000 47.619 0.00 0.00 0.00 2.57
2238 2543 2.000447 ACGGAGCAAAGCGAGTAAATC 59.000 47.619 0.00 0.00 0.00 2.17
2239 2544 2.094762 ACGGAGCAAAGCGAGTAAAT 57.905 45.000 0.00 0.00 0.00 1.40
2240 2545 2.728690 TACGGAGCAAAGCGAGTAAA 57.271 45.000 0.00 0.00 0.00 2.01
2241 2546 2.094390 ACATACGGAGCAAAGCGAGTAA 60.094 45.455 0.00 0.00 0.00 2.24
2242 2547 1.475280 ACATACGGAGCAAAGCGAGTA 59.525 47.619 0.00 0.00 0.00 2.59
2243 2548 0.246635 ACATACGGAGCAAAGCGAGT 59.753 50.000 0.00 0.00 0.00 4.18
2244 2549 2.120232 CTACATACGGAGCAAAGCGAG 58.880 52.381 0.00 0.00 0.00 5.03
2245 2550 1.475280 ACTACATACGGAGCAAAGCGA 59.525 47.619 0.00 0.00 0.00 4.93
2246 2551 1.852895 GACTACATACGGAGCAAAGCG 59.147 52.381 0.00 0.00 0.00 4.68
2247 2552 2.603560 GTGACTACATACGGAGCAAAGC 59.396 50.000 0.00 0.00 0.00 3.51
2248 2553 4.111375 AGTGACTACATACGGAGCAAAG 57.889 45.455 0.00 0.00 0.00 2.77
2249 2554 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2250 2555 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2251 2556 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2252 2557 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2253 2558 4.082408 TCCAACAAGTGACTACATACGGAG 60.082 45.833 0.00 0.00 0.00 4.63
2254 2559 3.827876 TCCAACAAGTGACTACATACGGA 59.172 43.478 0.00 0.00 0.00 4.69
2255 2560 4.182693 TCCAACAAGTGACTACATACGG 57.817 45.455 0.00 0.00 0.00 4.02
2256 2561 6.100004 AGATTCCAACAAGTGACTACATACG 58.900 40.000 0.00 0.00 0.00 3.06
2257 2562 7.324178 AGAGATTCCAACAAGTGACTACATAC 58.676 38.462 0.00 0.00 0.00 2.39
2258 2563 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
2259 2564 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
2260 2565 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
2261 2566 8.603242 TTTTAGAGATTCCAACAAGTGACTAC 57.397 34.615 0.00 0.00 0.00 2.73
2302 2607 9.950680 CGGTTGCAATCAGATATTTATTACTTT 57.049 29.630 10.93 0.00 0.00 2.66
2303 2608 8.076178 GCGGTTGCAATCAGATATTTATTACTT 58.924 33.333 10.93 0.00 42.15 2.24
2304 2609 7.584987 GCGGTTGCAATCAGATATTTATTACT 58.415 34.615 10.93 0.00 42.15 2.24
2305 2610 7.781763 GCGGTTGCAATCAGATATTTATTAC 57.218 36.000 10.93 0.00 42.15 1.89
2322 2627 0.179124 TTGTGGAGTTTTGCGGTTGC 60.179 50.000 0.00 0.00 43.20 4.17
2323 2628 2.285827 TTTGTGGAGTTTTGCGGTTG 57.714 45.000 0.00 0.00 0.00 3.77
2324 2629 3.132111 AGAATTTGTGGAGTTTTGCGGTT 59.868 39.130 0.00 0.00 0.00 4.44
2325 2630 2.693074 AGAATTTGTGGAGTTTTGCGGT 59.307 40.909 0.00 0.00 0.00 5.68
2326 2631 3.052036 CAGAATTTGTGGAGTTTTGCGG 58.948 45.455 0.00 0.00 0.00 5.69
2327 2632 3.963665 TCAGAATTTGTGGAGTTTTGCG 58.036 40.909 0.00 0.00 0.00 4.85
2328 2633 4.746611 CCTTCAGAATTTGTGGAGTTTTGC 59.253 41.667 1.51 0.00 0.00 3.68
2329 2634 5.163416 ACCCTTCAGAATTTGTGGAGTTTTG 60.163 40.000 1.51 0.00 0.00 2.44
2330 2635 4.962362 ACCCTTCAGAATTTGTGGAGTTTT 59.038 37.500 1.51 0.00 0.00 2.43
2331 2636 4.546674 ACCCTTCAGAATTTGTGGAGTTT 58.453 39.130 1.51 0.00 0.00 2.66
2332 2637 4.184649 ACCCTTCAGAATTTGTGGAGTT 57.815 40.909 1.51 0.00 0.00 3.01
2333 2638 3.884037 ACCCTTCAGAATTTGTGGAGT 57.116 42.857 1.51 0.00 0.00 3.85
2334 2639 3.891366 ACAACCCTTCAGAATTTGTGGAG 59.109 43.478 0.00 0.00 0.00 3.86
2335 2640 3.909732 ACAACCCTTCAGAATTTGTGGA 58.090 40.909 4.78 0.00 0.00 4.02
2336 2641 4.827284 ACTACAACCCTTCAGAATTTGTGG 59.173 41.667 12.26 11.79 35.46 4.17
2337 2642 5.299279 ACACTACAACCCTTCAGAATTTGTG 59.701 40.000 12.26 0.00 32.73 3.33
2338 2643 5.445964 ACACTACAACCCTTCAGAATTTGT 58.554 37.500 9.00 9.00 34.79 2.83
2339 2644 6.208644 CAACACTACAACCCTTCAGAATTTG 58.791 40.000 0.00 0.00 0.00 2.32
2340 2645 5.301805 CCAACACTACAACCCTTCAGAATTT 59.698 40.000 0.00 0.00 0.00 1.82
2341 2646 4.827284 CCAACACTACAACCCTTCAGAATT 59.173 41.667 0.00 0.00 0.00 2.17
2342 2647 4.141251 ACCAACACTACAACCCTTCAGAAT 60.141 41.667 0.00 0.00 0.00 2.40
2343 2648 3.201266 ACCAACACTACAACCCTTCAGAA 59.799 43.478 0.00 0.00 0.00 3.02
2344 2649 2.775384 ACCAACACTACAACCCTTCAGA 59.225 45.455 0.00 0.00 0.00 3.27
2345 2650 3.208747 ACCAACACTACAACCCTTCAG 57.791 47.619 0.00 0.00 0.00 3.02
2346 2651 3.655615 AACCAACACTACAACCCTTCA 57.344 42.857 0.00 0.00 0.00 3.02
2347 2652 4.678622 CAAAACCAACACTACAACCCTTC 58.321 43.478 0.00 0.00 0.00 3.46
2348 2653 3.118920 GCAAAACCAACACTACAACCCTT 60.119 43.478 0.00 0.00 0.00 3.95
2349 2654 2.429250 GCAAAACCAACACTACAACCCT 59.571 45.455 0.00 0.00 0.00 4.34
2350 2655 2.166664 TGCAAAACCAACACTACAACCC 59.833 45.455 0.00 0.00 0.00 4.11
2351 2656 3.512033 TGCAAAACCAACACTACAACC 57.488 42.857 0.00 0.00 0.00 3.77
2352 2657 4.677584 TGATGCAAAACCAACACTACAAC 58.322 39.130 0.00 0.00 0.00 3.32
2353 2658 4.991153 TGATGCAAAACCAACACTACAA 57.009 36.364 0.00 0.00 0.00 2.41
2354 2659 4.991153 TTGATGCAAAACCAACACTACA 57.009 36.364 0.00 0.00 0.00 2.74
2355 2660 6.843069 AAATTGATGCAAAACCAACACTAC 57.157 33.333 0.00 0.00 0.00 2.73
2356 2661 7.856145 AAAAATTGATGCAAAACCAACACTA 57.144 28.000 0.00 0.00 0.00 2.74
2357 2662 6.756299 AAAAATTGATGCAAAACCAACACT 57.244 29.167 0.00 0.00 0.00 3.55
2387 2692 1.751437 AATGGGGCGAACTCTTAAGC 58.249 50.000 0.00 0.00 0.00 3.09
2388 2693 3.756434 TCAAAATGGGGCGAACTCTTAAG 59.244 43.478 0.00 0.00 0.00 1.85
2389 2694 3.757270 TCAAAATGGGGCGAACTCTTAA 58.243 40.909 0.00 0.00 0.00 1.85
2390 2695 3.426787 TCAAAATGGGGCGAACTCTTA 57.573 42.857 0.00 0.00 0.00 2.10
2391 2696 2.286365 TCAAAATGGGGCGAACTCTT 57.714 45.000 0.00 0.00 0.00 2.85
2392 2697 2.286365 TTCAAAATGGGGCGAACTCT 57.714 45.000 0.00 0.00 0.00 3.24
2393 2698 3.378911 TTTTCAAAATGGGGCGAACTC 57.621 42.857 0.00 0.00 0.00 3.01
2394 2699 3.133901 ACTTTTTCAAAATGGGGCGAACT 59.866 39.130 1.21 0.00 0.00 3.01
2395 2700 3.462982 ACTTTTTCAAAATGGGGCGAAC 58.537 40.909 1.21 0.00 0.00 3.95
2396 2701 3.828875 ACTTTTTCAAAATGGGGCGAA 57.171 38.095 1.21 0.00 0.00 4.70
2397 2702 3.493524 GGAACTTTTTCAAAATGGGGCGA 60.494 43.478 1.21 0.00 32.80 5.54
2398 2703 2.805671 GGAACTTTTTCAAAATGGGGCG 59.194 45.455 1.21 0.00 32.80 6.13
2399 2704 2.805671 CGGAACTTTTTCAAAATGGGGC 59.194 45.455 1.21 0.00 32.80 5.80
2400 2705 4.055360 GACGGAACTTTTTCAAAATGGGG 58.945 43.478 1.21 0.00 32.80 4.96
2401 2706 4.055360 GGACGGAACTTTTTCAAAATGGG 58.945 43.478 1.21 0.00 32.80 4.00
2402 2707 4.944048 AGGACGGAACTTTTTCAAAATGG 58.056 39.130 1.21 0.00 32.80 3.16
2403 2708 5.173131 CGAAGGACGGAACTTTTTCAAAATG 59.827 40.000 0.00 0.00 38.46 2.32
2404 2709 5.278604 CGAAGGACGGAACTTTTTCAAAAT 58.721 37.500 0.00 0.00 38.46 1.82
2405 2710 4.664188 CGAAGGACGGAACTTTTTCAAAA 58.336 39.130 0.00 0.00 38.46 2.44
2406 2711 4.281525 CGAAGGACGGAACTTTTTCAAA 57.718 40.909 0.00 0.00 38.46 2.69
2407 2712 3.955771 CGAAGGACGGAACTTTTTCAA 57.044 42.857 0.00 0.00 38.46 2.69
2420 2725 1.668151 GTGGCCAGTGACGAAGGAC 60.668 63.158 5.11 0.00 0.00 3.85
2421 2726 2.741092 GTGGCCAGTGACGAAGGA 59.259 61.111 5.11 0.00 0.00 3.36
2422 2727 2.738521 CGTGGCCAGTGACGAAGG 60.739 66.667 5.11 0.00 37.81 3.46
2423 2728 2.029073 ACGTGGCCAGTGACGAAG 59.971 61.111 19.17 0.89 38.94 3.79
2424 2729 2.279851 CACGTGGCCAGTGACGAA 60.280 61.111 23.25 0.00 41.83 3.85
2425 2730 4.293648 CCACGTGGCCAGTGACGA 62.294 66.667 24.02 0.00 41.83 4.20
2426 2731 3.800685 TTCCACGTGGCCAGTGACG 62.801 63.158 30.25 20.56 41.83 4.35
2427 2732 1.961277 CTTCCACGTGGCCAGTGAC 60.961 63.158 30.25 8.67 41.83 3.67
2428 2733 2.425592 CTTCCACGTGGCCAGTGA 59.574 61.111 30.25 8.69 41.83 3.41
2429 2734 2.669569 CCTTCCACGTGGCCAGTG 60.670 66.667 30.25 21.62 39.19 3.66
2430 2735 4.643387 GCCTTCCACGTGGCCAGT 62.643 66.667 30.25 3.37 43.11 4.00
2435 2740 1.517832 CTCTAGGCCTTCCACGTGG 59.482 63.158 29.26 29.26 33.74 4.94
2436 2741 1.153549 GCTCTAGGCCTTCCACGTG 60.154 63.158 12.58 9.08 34.27 4.49
2437 2742 1.305381 AGCTCTAGGCCTTCCACGT 60.305 57.895 12.58 0.00 43.05 4.49
2438 2743 1.142748 CAGCTCTAGGCCTTCCACG 59.857 63.158 12.58 0.00 43.05 4.94
2439 2744 0.176910 GTCAGCTCTAGGCCTTCCAC 59.823 60.000 12.58 0.00 43.05 4.02
2440 2745 1.323271 CGTCAGCTCTAGGCCTTCCA 61.323 60.000 12.58 0.00 43.05 3.53
2441 2746 1.439644 CGTCAGCTCTAGGCCTTCC 59.560 63.158 12.58 0.00 43.05 3.46
2442 2747 1.439644 CCGTCAGCTCTAGGCCTTC 59.560 63.158 12.58 0.00 43.05 3.46
2443 2748 2.726351 GCCGTCAGCTCTAGGCCTT 61.726 63.158 12.58 0.00 43.54 4.35
2444 2749 3.151022 GCCGTCAGCTCTAGGCCT 61.151 66.667 11.78 11.78 43.54 5.19
2447 2752 1.142748 CAAGGCCGTCAGCTCTAGG 59.857 63.158 0.00 0.00 43.05 3.02
2448 2753 1.142748 CCAAGGCCGTCAGCTCTAG 59.857 63.158 0.00 0.00 43.05 2.43
2449 2754 2.359169 CCCAAGGCCGTCAGCTCTA 61.359 63.158 0.00 0.00 43.05 2.43
2450 2755 3.710722 CCCAAGGCCGTCAGCTCT 61.711 66.667 0.00 0.00 43.05 4.09
2451 2756 4.785453 CCCCAAGGCCGTCAGCTC 62.785 72.222 0.00 0.00 43.05 4.09
2477 2782 2.933878 TAATGCCATGGTCCGCGGTC 62.934 60.000 27.15 20.62 0.00 4.79
2478 2783 2.940890 CTAATGCCATGGTCCGCGGT 62.941 60.000 27.15 1.49 0.00 5.68
2479 2784 2.203139 TAATGCCATGGTCCGCGG 60.203 61.111 22.12 22.12 0.00 6.46
2480 2785 2.253758 CCTAATGCCATGGTCCGCG 61.254 63.158 14.67 0.00 0.00 6.46
2481 2786 1.148273 TCCTAATGCCATGGTCCGC 59.852 57.895 14.67 0.00 0.00 5.54
2482 2787 0.535102 GGTCCTAATGCCATGGTCCG 60.535 60.000 14.67 0.00 0.00 4.79
2483 2788 0.846693 AGGTCCTAATGCCATGGTCC 59.153 55.000 14.67 0.00 0.00 4.46
2484 2789 1.490490 TCAGGTCCTAATGCCATGGTC 59.510 52.381 14.67 6.41 0.00 4.02
2485 2790 1.595311 TCAGGTCCTAATGCCATGGT 58.405 50.000 14.67 0.00 0.00 3.55
2486 2791 2.579873 CTTCAGGTCCTAATGCCATGG 58.420 52.381 7.63 7.63 0.00 3.66
2487 2792 2.579873 CCTTCAGGTCCTAATGCCATG 58.420 52.381 0.00 0.00 0.00 3.66
2488 2793 1.496429 CCCTTCAGGTCCTAATGCCAT 59.504 52.381 0.00 0.00 0.00 4.40
2489 2794 0.918983 CCCTTCAGGTCCTAATGCCA 59.081 55.000 0.00 0.00 0.00 4.92
2490 2795 1.134068 GTCCCTTCAGGTCCTAATGCC 60.134 57.143 0.00 0.00 36.75 4.40
2491 2796 1.559682 TGTCCCTTCAGGTCCTAATGC 59.440 52.381 0.00 0.00 36.75 3.56
2492 2797 4.202441 CATTGTCCCTTCAGGTCCTAATG 58.798 47.826 0.00 0.00 36.75 1.90
2493 2798 3.372025 GCATTGTCCCTTCAGGTCCTAAT 60.372 47.826 0.00 0.00 36.75 1.73
2494 2799 2.026262 GCATTGTCCCTTCAGGTCCTAA 60.026 50.000 0.00 0.00 36.75 2.69
2495 2800 1.559682 GCATTGTCCCTTCAGGTCCTA 59.440 52.381 0.00 0.00 36.75 2.94
2496 2801 0.329596 GCATTGTCCCTTCAGGTCCT 59.670 55.000 0.00 0.00 36.75 3.85
2497 2802 0.038166 TGCATTGTCCCTTCAGGTCC 59.962 55.000 0.00 0.00 36.75 4.46
2505 2810 1.073025 TTGTCGCTGCATTGTCCCT 59.927 52.632 0.00 0.00 0.00 4.20
2509 2814 1.279539 CGTGTTGTCGCTGCATTGT 59.720 52.632 0.00 0.00 0.00 2.71
2510 2815 4.119936 CGTGTTGTCGCTGCATTG 57.880 55.556 0.00 0.00 0.00 2.82
2521 2826 3.844858 TACACCGACCCGCGTGTTG 62.845 63.158 4.92 3.02 40.00 3.33
2523 2828 4.047059 CTACACCGACCCGCGTGT 62.047 66.667 4.92 0.00 41.35 4.49
2525 2830 3.741476 GTCTACACCGACCCGCGT 61.741 66.667 4.92 0.00 38.67 6.01
2528 2833 2.177531 CACGTCTACACCGACCCG 59.822 66.667 0.00 0.00 0.00 5.28
2538 2843 2.022754 GCTCTAGGCCTTCCACGTCTA 61.023 57.143 12.58 0.00 34.27 2.59
2548 2855 3.151022 GCCGTCAGCTCTAGGCCT 61.151 66.667 11.78 11.78 43.54 5.19
2554 2861 3.710722 CCCAAGGCCGTCAGCTCT 61.711 66.667 0.00 0.00 43.05 4.09
2589 2896 0.907704 TCAGGTCCTAATGCCACGGT 60.908 55.000 0.00 0.00 0.00 4.83
2598 2905 2.026262 GCATTGTCCCTTCAGGTCCTAA 60.026 50.000 0.00 0.00 36.75 2.69
2617 2924 3.268603 CCACGTGTTGTCGCTGCA 61.269 61.111 15.65 0.00 0.00 4.41
2672 2979 0.179189 CTTCGTTTTGGATCGCAGCC 60.179 55.000 0.00 0.00 0.00 4.85
2683 2991 2.543777 TGCAGCTACCTCTTCGTTTT 57.456 45.000 0.00 0.00 0.00 2.43
2687 2995 0.741221 GGGTTGCAGCTACCTCTTCG 60.741 60.000 23.17 0.00 35.92 3.79
2690 2998 1.481056 AACGGGTTGCAGCTACCTCT 61.481 55.000 23.17 7.86 35.92 3.69
2693 3001 3.263941 CAACGGGTTGCAGCTACC 58.736 61.111 17.03 17.03 33.45 3.18
2714 3022 4.256920 GAGTATGTGCCACTTCACTGATT 58.743 43.478 0.00 0.00 37.81 2.57
2718 3026 3.181455 TGTTGAGTATGTGCCACTTCACT 60.181 43.478 0.00 0.00 37.81 3.41
2725 3033 2.248280 ACGTTGTTGAGTATGTGCCA 57.752 45.000 0.00 0.00 0.00 4.92
2754 3062 3.255379 GCGAGCGTCCACGATTCC 61.255 66.667 2.58 0.00 43.02 3.01
2771 3079 4.024977 TCACGCGTAATTGGATTGATCATG 60.025 41.667 13.44 0.00 0.00 3.07
2783 3091 3.430895 ACACTTCGATTTCACGCGTAATT 59.569 39.130 13.44 3.58 0.00 1.40
2845 3154 3.260269 TGTACCAGATGGCCTAGCTAT 57.740 47.619 3.32 0.00 39.32 2.97
2867 3176 1.406341 GGTTGCACCTAGGTATTGCGA 60.406 52.381 15.80 11.45 39.22 5.10
2873 3182 2.320681 AGTCTGGTTGCACCTAGGTA 57.679 50.000 15.80 0.00 39.58 3.08
2913 3222 2.945008 GTGCTAGCCTGATTGCATGTAA 59.055 45.455 13.29 0.00 37.76 2.41
3052 3369 3.969250 CTACGTTGGCCCGCACCAT 62.969 63.158 0.00 0.00 40.13 3.55
3053 3370 4.690719 CTACGTTGGCCCGCACCA 62.691 66.667 0.00 0.00 38.16 4.17



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.