Multiple sequence alignment - TraesCS2A01G115500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G115500 chr2A 100.000 4032 0 0 1 4032 65955875 65951844 0.000000e+00 7446.0
1 TraesCS2A01G115500 chr2A 92.954 1405 67 18 1638 3034 66004750 66003370 0.000000e+00 2017.0
2 TraesCS2A01G115500 chr2A 94.298 947 50 3 1 946 744395180 744396123 0.000000e+00 1447.0
3 TraesCS2A01G115500 chr2A 85.986 578 36 19 950 1490 66005436 66004867 9.720000e-161 577.0
4 TraesCS2A01G115500 chr2A 78.336 697 91 32 1942 2607 66915225 66914558 2.920000e-106 396.0
5 TraesCS2A01G115500 chr2A 76.933 776 114 33 1866 2602 66909636 66908887 8.180000e-102 381.0
6 TraesCS2A01G115500 chr2B 88.568 1627 122 36 1625 3232 101543497 101541916 0.000000e+00 1916.0
7 TraesCS2A01G115500 chr2B 87.479 591 48 6 3236 3805 101541960 101541375 0.000000e+00 658.0
8 TraesCS2A01G115500 chr2B 78.005 882 111 54 1768 2607 103845850 103845010 1.010000e-130 477.0
9 TraesCS2A01G115500 chr2B 81.773 609 37 20 948 1490 101544131 101543531 3.700000e-120 442.0
10 TraesCS2A01G115500 chr2B 77.026 901 118 50 1751 2610 103956347 103955495 6.190000e-118 435.0
11 TraesCS2A01G115500 chr2B 75.803 1058 137 75 1618 2607 104053034 104052028 3.720000e-115 425.0
12 TraesCS2A01G115500 chr2B 76.497 902 121 50 1751 2607 103901174 103900319 1.350000e-109 407.0
13 TraesCS2A01G115500 chr2B 90.547 201 14 4 3837 4032 145371304 145371504 1.110000e-65 261.0
14 TraesCS2A01G115500 chr2B 77.002 487 81 20 2131 2602 103869768 103869298 2.410000e-62 250.0
15 TraesCS2A01G115500 chr2B 78.422 431 55 17 2065 2467 104019169 104018749 3.110000e-61 246.0
16 TraesCS2A01G115500 chr2B 76.092 435 46 31 1772 2186 103709577 103709181 1.490000e-39 174.0
17 TraesCS2A01G115500 chr2B 100.000 36 0 0 3803 3838 514886229 514886264 2.600000e-07 67.6
18 TraesCS2A01G115500 chr2B 95.122 41 2 0 3798 3838 776795071 776795031 9.350000e-07 65.8
19 TraesCS2A01G115500 chr3A 94.937 948 47 1 1 947 17512370 17513317 0.000000e+00 1483.0
20 TraesCS2A01G115500 chr3A 94.192 947 52 2 1 945 706023838 706022893 0.000000e+00 1441.0
21 TraesCS2A01G115500 chr3A 98.469 196 3 0 3837 4032 122994411 122994216 2.980000e-91 346.0
22 TraesCS2A01G115500 chr3A 90.000 200 15 4 3838 4032 141557786 141557587 1.860000e-63 254.0
23 TraesCS2A01G115500 chrUn 94.931 947 46 1 1 945 83397758 83396812 0.000000e+00 1482.0
24 TraesCS2A01G115500 chrUn 93.981 947 55 2 1 946 63634270 63633325 0.000000e+00 1432.0
25 TraesCS2A01G115500 chr7A 94.620 948 47 3 1 945 662963733 662964679 0.000000e+00 1465.0
26 TraesCS2A01G115500 chr7A 89.796 196 15 5 3828 4019 80912742 80912936 3.110000e-61 246.0
27 TraesCS2A01G115500 chr5A 94.403 947 51 2 1 946 27688441 27689386 0.000000e+00 1454.0
28 TraesCS2A01G115500 chr5A 89.500 200 16 4 3838 4032 280768443 280768244 8.650000e-62 248.0
29 TraesCS2A01G115500 chr1A 94.118 952 55 1 1 952 25619104 25618154 0.000000e+00 1447.0
30 TraesCS2A01G115500 chr6A 94.292 946 50 4 1 945 114475172 114476114 0.000000e+00 1445.0
31 TraesCS2A01G115500 chr6A 94.872 195 10 0 3838 4032 293328834 293328640 5.060000e-79 305.0
32 TraesCS2A01G115500 chr2D 93.388 968 42 9 1638 2597 69028890 69027937 0.000000e+00 1413.0
33 TraesCS2A01G115500 chr2D 89.914 466 33 5 2668 3122 69027935 69027473 4.490000e-164 588.0
34 TraesCS2A01G115500 chr2D 84.589 584 42 19 950 1496 69029506 69028934 1.650000e-148 536.0
35 TraesCS2A01G115500 chr2D 87.746 457 36 5 3369 3805 69027178 69026722 2.150000e-142 516.0
36 TraesCS2A01G115500 chr2D 77.318 895 132 36 1739 2602 67447829 67448683 2.840000e-126 462.0
37 TraesCS2A01G115500 chr2D 76.458 909 119 52 1739 2602 67445143 67446001 4.850000e-109 405.0
38 TraesCS2A01G115500 chr2D 77.607 585 74 31 2065 2604 67442801 67443373 6.550000e-78 302.0
39 TraesCS2A01G115500 chr2D 75.763 590 86 29 1845 2430 67452693 67453229 1.120000e-60 244.0
40 TraesCS2A01G115500 chr2D 92.517 147 10 1 3236 3381 69027353 69027207 4.080000e-50 209.0
41 TraesCS2A01G115500 chr2D 88.043 92 6 3 1251 1340 68855648 68855736 1.980000e-18 104.0
42 TraesCS2A01G115500 chr4A 97.436 195 5 0 3838 4032 517933118 517932924 2.320000e-87 333.0
43 TraesCS2A01G115500 chr4B 89.500 200 16 4 3838 4032 566606809 566607008 8.650000e-62 248.0
44 TraesCS2A01G115500 chr4B 93.750 48 1 2 3793 3838 656282000 656282047 2.010000e-08 71.3
45 TraesCS2A01G115500 chr4B 100.000 36 0 0 3803 3838 656283159 656283124 2.600000e-07 67.6
46 TraesCS2A01G115500 chr1B 89.500 200 16 5 3838 4032 154143773 154143972 8.650000e-62 248.0
47 TraesCS2A01G115500 chr5D 95.556 45 1 1 3797 3840 72207112 72207068 2.010000e-08 71.3
48 TraesCS2A01G115500 chr5D 100.000 36 0 0 3803 3838 445179204 445179239 2.600000e-07 67.6
49 TraesCS2A01G115500 chr5B 100.000 38 0 0 3801 3838 510513754 510513791 2.010000e-08 71.3
50 TraesCS2A01G115500 chr3B 100.000 37 0 0 3802 3838 133428323 133428359 7.230000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G115500 chr2A 65951844 65955875 4031 True 7446.000000 7446 100.000000 1 4032 1 chr2A.!!$R1 4031
1 TraesCS2A01G115500 chr2A 744395180 744396123 943 False 1447.000000 1447 94.298000 1 946 1 chr2A.!!$F1 945
2 TraesCS2A01G115500 chr2A 66003370 66005436 2066 True 1297.000000 2017 89.470000 950 3034 2 chr2A.!!$R4 2084
3 TraesCS2A01G115500 chr2A 66914558 66915225 667 True 396.000000 396 78.336000 1942 2607 1 chr2A.!!$R3 665
4 TraesCS2A01G115500 chr2A 66908887 66909636 749 True 381.000000 381 76.933000 1866 2602 1 chr2A.!!$R2 736
5 TraesCS2A01G115500 chr2B 101541375 101544131 2756 True 1005.333333 1916 85.940000 948 3805 3 chr2B.!!$R9 2857
6 TraesCS2A01G115500 chr2B 103845010 103845850 840 True 477.000000 477 78.005000 1768 2607 1 chr2B.!!$R2 839
7 TraesCS2A01G115500 chr2B 103955495 103956347 852 True 435.000000 435 77.026000 1751 2610 1 chr2B.!!$R5 859
8 TraesCS2A01G115500 chr2B 104052028 104053034 1006 True 425.000000 425 75.803000 1618 2607 1 chr2B.!!$R7 989
9 TraesCS2A01G115500 chr2B 103900319 103901174 855 True 407.000000 407 76.497000 1751 2607 1 chr2B.!!$R4 856
10 TraesCS2A01G115500 chr3A 17512370 17513317 947 False 1483.000000 1483 94.937000 1 947 1 chr3A.!!$F1 946
11 TraesCS2A01G115500 chr3A 706022893 706023838 945 True 1441.000000 1441 94.192000 1 945 1 chr3A.!!$R3 944
12 TraesCS2A01G115500 chrUn 83396812 83397758 946 True 1482.000000 1482 94.931000 1 945 1 chrUn.!!$R2 944
13 TraesCS2A01G115500 chrUn 63633325 63634270 945 True 1432.000000 1432 93.981000 1 946 1 chrUn.!!$R1 945
14 TraesCS2A01G115500 chr7A 662963733 662964679 946 False 1465.000000 1465 94.620000 1 945 1 chr7A.!!$F2 944
15 TraesCS2A01G115500 chr5A 27688441 27689386 945 False 1454.000000 1454 94.403000 1 946 1 chr5A.!!$F1 945
16 TraesCS2A01G115500 chr1A 25618154 25619104 950 True 1447.000000 1447 94.118000 1 952 1 chr1A.!!$R1 951
17 TraesCS2A01G115500 chr6A 114475172 114476114 942 False 1445.000000 1445 94.292000 1 945 1 chr6A.!!$F1 944
18 TraesCS2A01G115500 chr2D 69026722 69029506 2784 True 652.400000 1413 89.630800 950 3805 5 chr2D.!!$R1 2855
19 TraesCS2A01G115500 chr2D 67442801 67448683 5882 False 389.666667 462 77.127667 1739 2604 3 chr2D.!!$F3 865
20 TraesCS2A01G115500 chr2D 67452693 67453229 536 False 244.000000 244 75.763000 1845 2430 1 chr2D.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 531 0.460987 GCTTGACTAGCGTGGCTCAT 60.461 55.0 0.0 0.0 40.71 2.90 F
1503 1587 0.031010 ACCTACCACTCCCTCCATCC 60.031 60.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1535 1619 0.035152 TAACTACTCCCTCCGTCGCA 60.035 55.0 0.00 0.00 0.0 5.10 R
3474 6999 0.108329 GGATTCTCTTCCGCGGTGAA 60.108 55.0 27.15 22.92 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 131 1.133790 CCGGTTCAACTACCTCCTACG 59.866 57.143 0.00 0.00 35.97 3.51
274 280 7.095229 CGGATACCAAAACCATCACACTATATG 60.095 40.741 0.00 0.00 0.00 1.78
508 516 1.999024 GCTTCGAGAGGAGAAAGCTTG 59.001 52.381 0.00 0.00 39.93 4.01
522 530 1.079819 GCTTGACTAGCGTGGCTCA 60.080 57.895 0.00 0.00 40.71 4.26
523 531 0.460987 GCTTGACTAGCGTGGCTCAT 60.461 55.000 0.00 0.00 40.71 2.90
576 584 2.619074 GGTGAGCTAGAGCACCCAAATT 60.619 50.000 18.65 0.00 46.91 1.82
879 889 2.148723 AATGCCACCATTGGTCCCGA 62.149 55.000 5.04 0.00 45.98 5.14
966 976 4.103153 TGGTAGGCCCTATCAGAAGATTTG 59.897 45.833 0.00 0.00 35.67 2.32
979 991 7.827819 TCAGAAGATTTGTACATAAACCGAG 57.172 36.000 0.00 0.00 0.00 4.63
992 1004 6.740110 ACATAAACCGAGTTTTTGTTGCATA 58.260 32.000 14.80 0.00 41.97 3.14
1019 1031 2.093869 GCAAGGTGTCCATTGATGCAAT 60.094 45.455 0.00 0.00 34.04 3.56
1024 1038 5.263599 AGGTGTCCATTGATGCAATTAAGA 58.736 37.500 0.00 0.00 31.05 2.10
1049 1063 0.179045 AGCTCAGCAAGTTTCGGTGT 60.179 50.000 0.00 0.00 33.61 4.16
1051 1065 1.597937 GCTCAGCAAGTTTCGGTGTTG 60.598 52.381 0.00 0.00 33.61 3.33
1066 1080 6.774354 TCGGTGTTGTAGTTCAAGAAATAC 57.226 37.500 12.10 12.10 40.90 1.89
1067 1081 6.518493 TCGGTGTTGTAGTTCAAGAAATACT 58.482 36.000 17.76 1.04 41.05 2.12
1068 1082 7.660112 TCGGTGTTGTAGTTCAAGAAATACTA 58.340 34.615 17.76 10.15 41.05 1.82
1146 1190 4.242475 GCAAAGTTTTGTTAGGGTATGGC 58.758 43.478 6.48 0.00 40.24 4.40
1147 1191 4.021456 GCAAAGTTTTGTTAGGGTATGGCT 60.021 41.667 6.48 0.00 40.24 4.75
1167 1211 3.805108 GCTGCCATGTCTGGTTAGGATAG 60.805 52.174 0.00 0.00 45.10 2.08
1168 1212 2.705658 TGCCATGTCTGGTTAGGATAGG 59.294 50.000 0.00 0.00 45.10 2.57
1170 1214 3.244249 GCCATGTCTGGTTAGGATAGGAC 60.244 52.174 0.00 0.00 45.10 3.85
1171 1215 4.227197 CCATGTCTGGTTAGGATAGGACT 58.773 47.826 0.00 0.00 37.79 3.85
1220 1264 3.587797 AACATCGTGACGTATGGAGTT 57.412 42.857 17.11 7.59 0.00 3.01
1227 1271 6.441093 TCGTGACGTATGGAGTTATAAAGT 57.559 37.500 4.40 0.00 0.00 2.66
1396 1475 9.883142 TTTGTAAGTTCAATTTGAGGAATGTTT 57.117 25.926 0.00 0.00 0.00 2.83
1462 1544 8.921670 GTTTTTATCCAGCGTTTAAATTCACAT 58.078 29.630 0.00 0.00 0.00 3.21
1473 1555 8.704234 GCGTTTAAATTCACATGGTTAATCAAA 58.296 29.630 0.00 0.00 0.00 2.69
1493 1577 9.582648 AATCAAATAACTTTGTTACCTACCACT 57.417 29.630 0.00 0.00 42.02 4.00
1494 1578 8.611654 TCAAATAACTTTGTTACCTACCACTC 57.388 34.615 0.00 0.00 42.02 3.51
1496 1580 4.362470 AACTTTGTTACCTACCACTCCC 57.638 45.455 0.00 0.00 0.00 4.30
1497 1581 3.595021 ACTTTGTTACCTACCACTCCCT 58.405 45.455 0.00 0.00 0.00 4.20
1498 1582 3.581770 ACTTTGTTACCTACCACTCCCTC 59.418 47.826 0.00 0.00 0.00 4.30
1501 1585 2.045326 TGTTACCTACCACTCCCTCCAT 59.955 50.000 0.00 0.00 0.00 3.41
1502 1586 2.699321 GTTACCTACCACTCCCTCCATC 59.301 54.545 0.00 0.00 0.00 3.51
1503 1587 0.031010 ACCTACCACTCCCTCCATCC 60.031 60.000 0.00 0.00 0.00 3.51
1504 1588 0.764752 CCTACCACTCCCTCCATCCC 60.765 65.000 0.00 0.00 0.00 3.85
1505 1589 0.031111 CTACCACTCCCTCCATCCCA 60.031 60.000 0.00 0.00 0.00 4.37
1506 1590 0.326238 TACCACTCCCTCCATCCCAC 60.326 60.000 0.00 0.00 0.00 4.61
1507 1591 1.616327 CCACTCCCTCCATCCCACA 60.616 63.158 0.00 0.00 0.00 4.17
1508 1592 1.207488 CCACTCCCTCCATCCCACAA 61.207 60.000 0.00 0.00 0.00 3.33
1509 1593 0.921896 CACTCCCTCCATCCCACAAT 59.078 55.000 0.00 0.00 0.00 2.71
1511 1595 0.921896 CTCCCTCCATCCCACAATGT 59.078 55.000 0.00 0.00 0.00 2.71
1512 1596 2.126882 CTCCCTCCATCCCACAATGTA 58.873 52.381 0.00 0.00 0.00 2.29
1513 1597 2.105477 CTCCCTCCATCCCACAATGTAG 59.895 54.545 0.00 0.00 0.00 2.74
1514 1598 1.143684 CCCTCCATCCCACAATGTAGG 59.856 57.143 0.00 0.00 33.66 3.18
1515 1599 2.126882 CCTCCATCCCACAATGTAGGA 58.873 52.381 2.50 2.50 35.36 2.94
1516 1600 2.158755 CCTCCATCCCACAATGTAGGAC 60.159 54.545 1.97 0.00 35.36 3.85
1517 1601 1.484653 TCCATCCCACAATGTAGGACG 59.515 52.381 1.97 0.00 30.97 4.79
1519 1603 2.355716 CCATCCCACAATGTAGGACGTT 60.356 50.000 1.97 0.00 30.97 3.99
1520 1604 3.343617 CATCCCACAATGTAGGACGTTT 58.656 45.455 1.97 0.00 30.97 3.60
1521 1605 3.495434 TCCCACAATGTAGGACGTTTT 57.505 42.857 0.00 0.00 0.00 2.43
1522 1606 3.822940 TCCCACAATGTAGGACGTTTTT 58.177 40.909 0.00 0.00 0.00 1.94
1543 1627 5.441709 TTTGACATATACTATGCGACGGA 57.558 39.130 0.00 0.00 0.00 4.69
1544 1628 4.680171 TGACATATACTATGCGACGGAG 57.320 45.455 0.00 0.00 0.00 4.63
1545 1629 3.439129 TGACATATACTATGCGACGGAGG 59.561 47.826 0.00 0.00 0.00 4.30
1546 1630 2.753452 ACATATACTATGCGACGGAGGG 59.247 50.000 0.00 0.00 0.00 4.30
1547 1631 2.865119 TATACTATGCGACGGAGGGA 57.135 50.000 0.00 0.00 0.00 4.20
1548 1632 1.535833 ATACTATGCGACGGAGGGAG 58.464 55.000 0.00 0.00 0.00 4.30
1562 1729 5.380900 ACGGAGGGAGTAGTTATTACCTAC 58.619 45.833 0.00 0.00 35.98 3.18
1689 1865 4.759693 TGGTCCACAGTTATGATTGTGAAC 59.240 41.667 13.76 4.46 43.84 3.18
1698 1874 7.492669 ACAGTTATGATTGTGAACTCTATTCCG 59.507 37.037 0.00 0.00 31.04 4.30
1829 2450 9.896645 ACAGTCTTATACAATTCACTGATTCAT 57.103 29.630 3.96 0.00 35.77 2.57
1875 2497 9.913310 TCTAGAAGAGATGTTGAGATCTTTAGA 57.087 33.333 0.00 0.00 32.57 2.10
1919 2554 8.950208 TGTATATCAAATGTGATCGGTAACAA 57.050 30.769 0.29 0.00 43.69 2.83
1920 2555 9.040939 TGTATATCAAATGTGATCGGTAACAAG 57.959 33.333 0.29 0.00 43.69 3.16
1921 2556 4.678509 TCAAATGTGATCGGTAACAAGC 57.321 40.909 0.00 0.00 0.00 4.01
1922 2557 4.323417 TCAAATGTGATCGGTAACAAGCT 58.677 39.130 0.00 0.00 0.00 3.74
1953 5274 2.663808 TGCGCACATTCTGTTGAAATG 58.336 42.857 5.66 0.00 35.63 2.32
2064 5406 2.435059 GGCCCAGCACGACTCTTC 60.435 66.667 0.00 0.00 0.00 2.87
2067 5409 0.461961 GCCCAGCACGACTCTTCTAT 59.538 55.000 0.00 0.00 0.00 1.98
2069 5411 2.544069 GCCCAGCACGACTCTTCTATAC 60.544 54.545 0.00 0.00 0.00 1.47
2071 5413 3.319405 CCCAGCACGACTCTTCTATACAT 59.681 47.826 0.00 0.00 0.00 2.29
2072 5414 4.519350 CCCAGCACGACTCTTCTATACATA 59.481 45.833 0.00 0.00 0.00 2.29
2073 5415 5.453648 CCAGCACGACTCTTCTATACATAC 58.546 45.833 0.00 0.00 0.00 2.39
2209 5587 3.916392 GACGCTGGTGTCGGGTCAG 62.916 68.421 0.00 0.00 42.05 3.51
2610 6009 4.783621 GATGGTGCCGCTGCCTCA 62.784 66.667 0.00 0.00 36.33 3.86
2611 6010 4.119363 ATGGTGCCGCTGCCTCAT 62.119 61.111 0.00 0.00 36.33 2.90
2612 6011 4.783621 TGGTGCCGCTGCCTCATC 62.784 66.667 0.00 0.00 36.33 2.92
2613 6012 4.783621 GGTGCCGCTGCCTCATCA 62.784 66.667 0.00 0.00 36.33 3.07
2614 6013 2.515523 GTGCCGCTGCCTCATCAT 60.516 61.111 0.00 0.00 36.33 2.45
2628 6027 1.757118 TCATCATCAGGACGAAGGGTC 59.243 52.381 0.00 0.00 45.31 4.46
2645 6044 3.680786 CGTGCTGGGACGACTCCA 61.681 66.667 8.89 0.00 42.10 3.86
2689 6088 1.532604 CGTGGCAGTACTGTCCTCCA 61.533 60.000 24.16 18.61 33.48 3.86
2698 6097 1.896220 ACTGTCCTCCAACGTACGTA 58.104 50.000 23.12 5.12 0.00 3.57
3075 6484 1.293498 GAGATGCACACGGTCCAGT 59.707 57.895 0.00 0.00 0.00 4.00
3090 6534 1.483415 TCCAGTTAGGGTACATTCCGC 59.517 52.381 0.00 0.00 38.24 5.54
3113 6564 4.396790 CCACTCCTGTAGTCTACTTGTCTC 59.603 50.000 11.28 0.00 35.76 3.36
3114 6565 5.250200 CACTCCTGTAGTCTACTTGTCTCT 58.750 45.833 11.28 0.00 35.76 3.10
3115 6566 6.408035 CACTCCTGTAGTCTACTTGTCTCTA 58.592 44.000 11.28 0.00 35.76 2.43
3116 6567 7.051623 CACTCCTGTAGTCTACTTGTCTCTAT 58.948 42.308 11.28 0.00 35.76 1.98
3117 6568 7.554835 CACTCCTGTAGTCTACTTGTCTCTATT 59.445 40.741 11.28 0.00 35.76 1.73
3118 6569 7.554835 ACTCCTGTAGTCTACTTGTCTCTATTG 59.445 40.741 11.28 0.00 30.33 1.90
3119 6570 7.403671 TCCTGTAGTCTACTTGTCTCTATTGT 58.596 38.462 11.28 0.00 0.00 2.71
3120 6571 7.337184 TCCTGTAGTCTACTTGTCTCTATTGTG 59.663 40.741 11.28 0.00 0.00 3.33
3121 6572 7.121463 CCTGTAGTCTACTTGTCTCTATTGTGT 59.879 40.741 11.28 0.00 0.00 3.72
3122 6573 8.405418 TGTAGTCTACTTGTCTCTATTGTGTT 57.595 34.615 11.28 0.00 0.00 3.32
3123 6574 8.297426 TGTAGTCTACTTGTCTCTATTGTGTTG 58.703 37.037 11.28 0.00 0.00 3.33
3124 6575 7.291411 AGTCTACTTGTCTCTATTGTGTTGT 57.709 36.000 0.00 0.00 0.00 3.32
3125 6576 7.371936 AGTCTACTTGTCTCTATTGTGTTGTC 58.628 38.462 0.00 0.00 0.00 3.18
3126 6577 7.014326 AGTCTACTTGTCTCTATTGTGTTGTCA 59.986 37.037 0.00 0.00 0.00 3.58
3127 6578 7.115095 GTCTACTTGTCTCTATTGTGTTGTCAC 59.885 40.741 0.00 0.00 44.08 3.67
3128 6579 5.918608 ACTTGTCTCTATTGTGTTGTCACT 58.081 37.500 0.00 0.00 44.14 3.41
3129 6580 6.349300 ACTTGTCTCTATTGTGTTGTCACTT 58.651 36.000 0.00 0.00 44.14 3.16
3130 6581 6.823689 ACTTGTCTCTATTGTGTTGTCACTTT 59.176 34.615 0.00 0.00 44.14 2.66
3131 6582 7.336931 ACTTGTCTCTATTGTGTTGTCACTTTT 59.663 33.333 0.00 0.00 44.14 2.27
3132 6583 7.624360 TGTCTCTATTGTGTTGTCACTTTTT 57.376 32.000 0.00 0.00 44.14 1.94
3158 6609 3.034721 TGACGGGTCTATTGTGTTGTC 57.965 47.619 0.00 0.00 0.00 3.18
3164 6615 4.319477 CGGGTCTATTGTGTTGTCACTTTG 60.319 45.833 0.00 0.00 44.14 2.77
3186 6637 0.723414 CGCTGTCCATTGCAGTGTAG 59.277 55.000 8.53 4.97 39.02 2.74
3188 6639 2.673893 CGCTGTCCATTGCAGTGTAGTA 60.674 50.000 8.53 0.00 39.02 1.82
3190 6641 3.617531 GCTGTCCATTGCAGTGTAGTACT 60.618 47.826 8.53 0.00 41.36 2.73
3192 6643 4.314961 TGTCCATTGCAGTGTAGTACTTG 58.685 43.478 8.53 0.00 37.60 3.16
3194 6645 3.007940 TCCATTGCAGTGTAGTACTTGCT 59.992 43.478 22.28 8.58 37.60 3.91
3198 6649 6.094048 CCATTGCAGTGTAGTACTTGCTTAAT 59.906 38.462 22.28 15.27 37.60 1.40
3199 6650 6.721571 TTGCAGTGTAGTACTTGCTTAATC 57.278 37.500 22.28 3.32 37.60 1.75
3200 6651 4.862574 TGCAGTGTAGTACTTGCTTAATCG 59.137 41.667 22.28 0.00 37.60 3.34
3201 6652 4.267928 GCAGTGTAGTACTTGCTTAATCGG 59.732 45.833 17.62 0.00 37.60 4.18
3202 6653 5.408356 CAGTGTAGTACTTGCTTAATCGGT 58.592 41.667 0.00 0.00 37.60 4.69
3204 6655 6.034683 CAGTGTAGTACTTGCTTAATCGGTTC 59.965 42.308 0.00 0.00 37.60 3.62
3206 6657 6.589139 GTGTAGTACTTGCTTAATCGGTTCTT 59.411 38.462 0.00 0.00 0.00 2.52
3207 6658 7.117379 GTGTAGTACTTGCTTAATCGGTTCTTT 59.883 37.037 0.00 0.00 0.00 2.52
3208 6659 6.723131 AGTACTTGCTTAATCGGTTCTTTC 57.277 37.500 0.00 0.00 0.00 2.62
3209 6660 6.465084 AGTACTTGCTTAATCGGTTCTTTCT 58.535 36.000 0.00 0.00 0.00 2.52
3210 6661 5.864628 ACTTGCTTAATCGGTTCTTTCTC 57.135 39.130 0.00 0.00 0.00 2.87
3211 6662 4.695928 ACTTGCTTAATCGGTTCTTTCTCC 59.304 41.667 0.00 0.00 0.00 3.71
3212 6663 4.553330 TGCTTAATCGGTTCTTTCTCCT 57.447 40.909 0.00 0.00 0.00 3.69
3213 6664 4.253685 TGCTTAATCGGTTCTTTCTCCTG 58.746 43.478 0.00 0.00 0.00 3.86
3215 6666 4.093556 GCTTAATCGGTTCTTTCTCCTGTG 59.906 45.833 0.00 0.00 0.00 3.66
3218 6669 2.317040 TCGGTTCTTTCTCCTGTGAGT 58.683 47.619 0.00 0.00 39.75 3.41
3219 6670 2.035961 TCGGTTCTTTCTCCTGTGAGTG 59.964 50.000 0.00 0.00 39.75 3.51
3220 6671 2.035961 CGGTTCTTTCTCCTGTGAGTGA 59.964 50.000 0.00 0.00 39.75 3.41
3221 6672 3.306364 CGGTTCTTTCTCCTGTGAGTGAT 60.306 47.826 0.00 0.00 39.75 3.06
3222 6673 4.646572 GGTTCTTTCTCCTGTGAGTGATT 58.353 43.478 0.00 0.00 39.75 2.57
3223 6674 5.566826 CGGTTCTTTCTCCTGTGAGTGATTA 60.567 44.000 0.00 0.00 39.75 1.75
3225 6676 6.710744 GGTTCTTTCTCCTGTGAGTGATTAAA 59.289 38.462 0.00 0.00 39.75 1.52
3226 6677 7.308049 GGTTCTTTCTCCTGTGAGTGATTAAAC 60.308 40.741 0.00 0.00 39.75 2.01
3229 6680 7.657761 TCTTTCTCCTGTGAGTGATTAAACTTC 59.342 37.037 0.00 0.00 39.75 3.01
3230 6681 6.419484 TCTCCTGTGAGTGATTAAACTTCA 57.581 37.500 0.00 0.00 39.75 3.02
3231 6682 6.826668 TCTCCTGTGAGTGATTAAACTTCAA 58.173 36.000 0.00 0.00 39.75 2.69
3232 6683 7.279615 TCTCCTGTGAGTGATTAAACTTCAAA 58.720 34.615 0.00 0.00 39.75 2.69
3233 6684 7.939039 TCTCCTGTGAGTGATTAAACTTCAAAT 59.061 33.333 0.00 0.00 39.75 2.32
3249 6732 8.742554 AACTTCAAATTTACTTGCTTAATCGG 57.257 30.769 0.00 0.00 0.00 4.18
3346 6830 1.884579 CAAAGTGCAGCTGTGGAATCT 59.115 47.619 16.64 2.46 0.00 2.40
3359 6843 4.744570 TGTGGAATCTAAGTGTTAGAGCG 58.255 43.478 3.01 0.00 44.80 5.03
3423 6948 6.056884 TGCAATGCATCTACATCTGACAATA 58.943 36.000 2.72 0.00 31.71 1.90
3432 6957 7.437713 TCTACATCTGACAATAAGGGTCAAT 57.562 36.000 0.00 0.00 44.04 2.57
3445 6970 2.774234 AGGGTCAATGGATCGAACTCAT 59.226 45.455 0.00 0.00 0.00 2.90
3507 7032 4.701765 AGAGAATCCACATCTGAATTCCG 58.298 43.478 2.27 0.00 33.66 4.30
3527 7054 3.947834 CCGTTCAAAAGGAGCATAAGGAT 59.052 43.478 0.00 0.00 0.00 3.24
3533 7060 7.391148 TCAAAAGGAGCATAAGGATAACAAC 57.609 36.000 0.00 0.00 0.00 3.32
3547 7074 0.396435 AACAACGGTGAGCCTGATCA 59.604 50.000 7.88 0.00 0.00 2.92
3593 7121 1.424638 GATGGCTACTCTAAGGCCCA 58.575 55.000 0.00 0.00 44.71 5.36
3626 7154 7.665145 TGAACAAGACAAACCATATCATGAGAA 59.335 33.333 0.09 0.00 0.00 2.87
3650 7195 3.446873 ACTTTGCATTTGTCAGTTGGTCA 59.553 39.130 0.00 0.00 0.00 4.02
3689 7234 6.176975 TGTGCATTCTAGGAATAACAAACG 57.823 37.500 0.00 0.00 0.00 3.60
3695 7240 9.813080 GCATTCTAGGAATAACAAACGAATATC 57.187 33.333 0.00 0.00 0.00 1.63
3707 7252 1.140052 ACGAATATCCACGGGATTGCA 59.860 47.619 10.21 0.00 39.79 4.08
3716 7261 1.086696 ACGGGATTGCAACGATCAAG 58.913 50.000 14.04 3.58 0.00 3.02
3758 7303 0.401738 TCTTGGGGAGGTTGCAAGAG 59.598 55.000 0.00 0.00 0.00 2.85
3797 7342 0.470766 TGTTAGTCGGTTGCCCAACT 59.529 50.000 10.61 0.00 40.94 3.16
3805 7350 4.179361 TTGCCCAACTGCAAGGAG 57.821 55.556 1.29 0.00 45.77 3.69
3806 7351 1.229927 TTGCCCAACTGCAAGGAGT 59.770 52.632 1.29 0.00 45.77 3.85
3807 7352 0.476338 TTGCCCAACTGCAAGGAGTA 59.524 50.000 0.00 0.00 45.77 2.59
3808 7353 0.698238 TGCCCAACTGCAAGGAGTAT 59.302 50.000 0.00 0.00 38.56 2.12
3809 7354 1.912731 TGCCCAACTGCAAGGAGTATA 59.087 47.619 0.00 0.00 38.56 1.47
3810 7355 2.509548 TGCCCAACTGCAAGGAGTATAT 59.490 45.455 0.00 0.00 38.56 0.86
3811 7356 3.714280 TGCCCAACTGCAAGGAGTATATA 59.286 43.478 0.00 0.00 38.56 0.86
3812 7357 4.202357 TGCCCAACTGCAAGGAGTATATAG 60.202 45.833 0.00 0.00 38.56 1.31
3813 7358 4.319177 CCCAACTGCAAGGAGTATATAGC 58.681 47.826 0.00 0.00 39.30 2.97
3814 7359 4.202357 CCCAACTGCAAGGAGTATATAGCA 60.202 45.833 0.00 0.00 39.30 3.49
3815 7360 5.368145 CCAACTGCAAGGAGTATATAGCAA 58.632 41.667 0.00 0.00 39.30 3.91
3816 7361 5.822519 CCAACTGCAAGGAGTATATAGCAAA 59.177 40.000 0.00 0.00 39.30 3.68
3817 7362 6.318648 CCAACTGCAAGGAGTATATAGCAAAA 59.681 38.462 0.00 0.00 39.30 2.44
3818 7363 7.148086 CCAACTGCAAGGAGTATATAGCAAAAA 60.148 37.037 0.00 0.00 39.30 1.94
3838 7383 6.812879 AAAAACTACCACATTACAGGCTAC 57.187 37.500 0.00 0.00 0.00 3.58
3839 7384 5.757099 AAACTACCACATTACAGGCTACT 57.243 39.130 0.00 0.00 0.00 2.57
3840 7385 6.862469 AAACTACCACATTACAGGCTACTA 57.138 37.500 0.00 0.00 0.00 1.82
3841 7386 6.466885 AACTACCACATTACAGGCTACTAG 57.533 41.667 0.00 0.00 0.00 2.57
3842 7387 5.516984 ACTACCACATTACAGGCTACTAGT 58.483 41.667 0.00 0.00 0.00 2.57
3843 7388 6.666678 ACTACCACATTACAGGCTACTAGTA 58.333 40.000 1.89 1.89 0.00 1.82
3844 7389 6.771749 ACTACCACATTACAGGCTACTAGTAG 59.228 42.308 23.25 23.25 36.29 2.57
3845 7390 5.763355 ACCACATTACAGGCTACTAGTAGA 58.237 41.667 30.09 11.11 35.21 2.59
3846 7391 6.192773 ACCACATTACAGGCTACTAGTAGAA 58.807 40.000 30.09 16.63 35.21 2.10
3847 7392 6.839657 ACCACATTACAGGCTACTAGTAGAAT 59.160 38.462 30.09 17.96 35.21 2.40
3848 7393 7.148641 CCACATTACAGGCTACTAGTAGAATG 58.851 42.308 30.09 27.21 35.21 2.67
3849 7394 6.642950 CACATTACAGGCTACTAGTAGAATGC 59.357 42.308 30.09 16.92 35.21 3.56
3850 7395 5.786264 TTACAGGCTACTAGTAGAATGCC 57.214 43.478 30.09 23.99 40.54 4.40
3851 7396 2.966516 ACAGGCTACTAGTAGAATGCCC 59.033 50.000 30.09 20.87 41.08 5.36
3852 7397 2.029828 CAGGCTACTAGTAGAATGCCCG 60.030 54.545 30.09 15.17 41.08 6.13
3853 7398 1.962100 GGCTACTAGTAGAATGCCCGT 59.038 52.381 30.09 0.00 35.21 5.28
3854 7399 2.288273 GGCTACTAGTAGAATGCCCGTG 60.288 54.545 30.09 4.31 35.21 4.94
3855 7400 2.862921 GCTACTAGTAGAATGCCCGTGC 60.863 54.545 30.09 10.36 35.21 5.34
3856 7401 0.102481 ACTAGTAGAATGCCCGTGCG 59.898 55.000 3.59 0.00 41.78 5.34
3857 7402 0.102481 CTAGTAGAATGCCCGTGCGT 59.898 55.000 0.00 0.00 41.78 5.24
3859 7404 1.019278 AGTAGAATGCCCGTGCGTTG 61.019 55.000 0.86 0.00 46.55 4.10
3860 7405 2.395360 TAGAATGCCCGTGCGTTGC 61.395 57.895 0.86 0.00 46.55 4.17
3861 7406 4.776647 GAATGCCCGTGCGTTGCC 62.777 66.667 0.86 0.00 46.55 4.52
3878 7423 2.959507 GCCACGGGCTTTTGAAATAT 57.040 45.000 7.58 0.00 46.69 1.28
3879 7424 3.245518 GCCACGGGCTTTTGAAATATT 57.754 42.857 7.58 0.00 46.69 1.28
3880 7425 3.595173 GCCACGGGCTTTTGAAATATTT 58.405 40.909 0.00 0.00 46.69 1.40
3881 7426 4.000325 GCCACGGGCTTTTGAAATATTTT 59.000 39.130 1.43 0.00 46.69 1.82
3882 7427 4.454161 GCCACGGGCTTTTGAAATATTTTT 59.546 37.500 1.43 0.00 46.69 1.94
3883 7428 5.616645 GCCACGGGCTTTTGAAATATTTTTG 60.617 40.000 1.43 0.00 46.69 2.44
3884 7429 5.468409 CCACGGGCTTTTGAAATATTTTTGT 59.532 36.000 1.43 0.00 0.00 2.83
3885 7430 6.017523 CCACGGGCTTTTGAAATATTTTTGTT 60.018 34.615 1.43 0.00 0.00 2.83
3886 7431 6.850317 CACGGGCTTTTGAAATATTTTTGTTG 59.150 34.615 1.43 0.00 0.00 3.33
3887 7432 6.763610 ACGGGCTTTTGAAATATTTTTGTTGA 59.236 30.769 1.43 0.00 0.00 3.18
3888 7433 7.042119 ACGGGCTTTTGAAATATTTTTGTTGAG 60.042 33.333 1.43 0.00 0.00 3.02
3889 7434 7.042119 CGGGCTTTTGAAATATTTTTGTTGAGT 60.042 33.333 1.43 0.00 0.00 3.41
3890 7435 8.620416 GGGCTTTTGAAATATTTTTGTTGAGTT 58.380 29.630 1.43 0.00 0.00 3.01
3891 7436 9.437045 GGCTTTTGAAATATTTTTGTTGAGTTG 57.563 29.630 1.43 0.00 0.00 3.16
3892 7437 9.986833 GCTTTTGAAATATTTTTGTTGAGTTGT 57.013 25.926 1.43 0.00 0.00 3.32
3906 7451 7.463469 TGTTGAGTTGTATAGACATAATGCG 57.537 36.000 0.00 0.00 34.86 4.73
3907 7452 7.039270 TGTTGAGTTGTATAGACATAATGCGT 58.961 34.615 0.00 0.00 34.86 5.24
3908 7453 8.192110 TGTTGAGTTGTATAGACATAATGCGTA 58.808 33.333 0.00 0.00 34.86 4.42
3909 7454 9.027129 GTTGAGTTGTATAGACATAATGCGTAA 57.973 33.333 0.00 0.00 34.86 3.18
3910 7455 9.589111 TTGAGTTGTATAGACATAATGCGTAAA 57.411 29.630 0.00 0.00 34.86 2.01
3911 7456 9.027129 TGAGTTGTATAGACATAATGCGTAAAC 57.973 33.333 0.00 0.00 34.86 2.01
3912 7457 9.245962 GAGTTGTATAGACATAATGCGTAAACT 57.754 33.333 0.00 0.00 34.86 2.66
3913 7458 9.595823 AGTTGTATAGACATAATGCGTAAACTT 57.404 29.630 0.00 0.00 34.86 2.66
3916 7461 9.589111 TGTATAGACATAATGCGTAAACTTTCA 57.411 29.630 0.00 0.00 0.00 2.69
3917 7462 9.845305 GTATAGACATAATGCGTAAACTTTCAC 57.155 33.333 0.00 0.00 0.00 3.18
3918 7463 6.795098 AGACATAATGCGTAAACTTTCACA 57.205 33.333 0.00 0.00 0.00 3.58
3919 7464 7.377766 AGACATAATGCGTAAACTTTCACAT 57.622 32.000 0.00 0.00 0.00 3.21
3920 7465 7.243487 AGACATAATGCGTAAACTTTCACATG 58.757 34.615 0.00 0.00 0.00 3.21
3921 7466 6.908825 ACATAATGCGTAAACTTTCACATGT 58.091 32.000 0.00 0.00 0.00 3.21
3922 7467 8.035165 ACATAATGCGTAAACTTTCACATGTA 57.965 30.769 0.00 0.00 0.00 2.29
3923 7468 8.175069 ACATAATGCGTAAACTTTCACATGTAG 58.825 33.333 0.00 0.00 0.00 2.74
3924 7469 6.795098 AATGCGTAAACTTTCACATGTAGA 57.205 33.333 0.00 0.00 0.00 2.59
3925 7470 5.839262 TGCGTAAACTTTCACATGTAGAG 57.161 39.130 0.00 0.00 0.00 2.43
3926 7471 5.534407 TGCGTAAACTTTCACATGTAGAGA 58.466 37.500 0.00 0.00 0.00 3.10
3927 7472 6.163476 TGCGTAAACTTTCACATGTAGAGAT 58.837 36.000 0.00 0.00 0.00 2.75
3928 7473 7.317390 TGCGTAAACTTTCACATGTAGAGATA 58.683 34.615 0.00 0.00 0.00 1.98
3929 7474 7.815549 TGCGTAAACTTTCACATGTAGAGATAA 59.184 33.333 0.00 0.00 0.00 1.75
3930 7475 8.321716 GCGTAAACTTTCACATGTAGAGATAAG 58.678 37.037 0.00 2.92 0.00 1.73
3931 7476 9.569167 CGTAAACTTTCACATGTAGAGATAAGA 57.431 33.333 0.00 0.00 0.00 2.10
3935 7480 9.757227 AACTTTCACATGTAGAGATAAGATAGC 57.243 33.333 0.00 0.00 0.00 2.97
3936 7481 8.918116 ACTTTCACATGTAGAGATAAGATAGCA 58.082 33.333 0.00 0.00 0.00 3.49
3937 7482 9.190858 CTTTCACATGTAGAGATAAGATAGCAC 57.809 37.037 0.00 0.00 0.00 4.40
3938 7483 6.903419 TCACATGTAGAGATAAGATAGCACG 58.097 40.000 0.00 0.00 0.00 5.34
3939 7484 6.072452 TCACATGTAGAGATAAGATAGCACGG 60.072 42.308 0.00 0.00 0.00 4.94
3940 7485 5.184096 ACATGTAGAGATAAGATAGCACGGG 59.816 44.000 0.00 0.00 0.00 5.28
3941 7486 4.981812 TGTAGAGATAAGATAGCACGGGA 58.018 43.478 0.00 0.00 0.00 5.14
3942 7487 5.382616 TGTAGAGATAAGATAGCACGGGAA 58.617 41.667 0.00 0.00 0.00 3.97
3943 7488 6.010850 TGTAGAGATAAGATAGCACGGGAAT 58.989 40.000 0.00 0.00 0.00 3.01
3944 7489 5.398603 AGAGATAAGATAGCACGGGAATG 57.601 43.478 0.00 0.00 0.00 2.67
3945 7490 4.835615 AGAGATAAGATAGCACGGGAATGT 59.164 41.667 0.00 0.00 0.00 2.71
3946 7491 5.047660 AGAGATAAGATAGCACGGGAATGTC 60.048 44.000 0.00 0.00 0.00 3.06
3947 7492 2.225068 AAGATAGCACGGGAATGTCG 57.775 50.000 0.00 0.00 0.00 4.35
3948 7493 0.389391 AGATAGCACGGGAATGTCGG 59.611 55.000 0.00 0.00 0.00 4.79
3949 7494 0.104304 GATAGCACGGGAATGTCGGT 59.896 55.000 0.00 0.00 0.00 4.69
3950 7495 0.179084 ATAGCACGGGAATGTCGGTG 60.179 55.000 0.00 0.00 39.82 4.94
3952 7497 3.124921 CACGGGAATGTCGGTGCC 61.125 66.667 0.00 0.00 32.70 5.01
3953 7498 3.319198 ACGGGAATGTCGGTGCCT 61.319 61.111 0.00 0.00 0.00 4.75
3954 7499 2.046314 CGGGAATGTCGGTGCCTT 60.046 61.111 0.00 0.00 0.00 4.35
3955 7500 2.398554 CGGGAATGTCGGTGCCTTG 61.399 63.158 0.00 0.00 0.00 3.61
3956 7501 2.700773 GGGAATGTCGGTGCCTTGC 61.701 63.158 0.00 0.00 0.00 4.01
3957 7502 2.700773 GGAATGTCGGTGCCTTGCC 61.701 63.158 0.00 0.00 0.00 4.52
3958 7503 1.971167 GAATGTCGGTGCCTTGCCA 60.971 57.895 0.00 0.00 0.00 4.92
3959 7504 1.304381 AATGTCGGTGCCTTGCCAT 60.304 52.632 0.00 0.00 0.00 4.40
3960 7505 1.597797 AATGTCGGTGCCTTGCCATG 61.598 55.000 0.00 0.00 0.00 3.66
3961 7506 2.672996 GTCGGTGCCTTGCCATGT 60.673 61.111 0.00 0.00 0.00 3.21
3962 7507 2.672651 TCGGTGCCTTGCCATGTG 60.673 61.111 0.00 0.00 0.00 3.21
3963 7508 4.424566 CGGTGCCTTGCCATGTGC 62.425 66.667 0.00 0.00 41.77 4.57
3964 7509 2.993264 GGTGCCTTGCCATGTGCT 60.993 61.111 7.54 0.00 42.00 4.40
3965 7510 1.678635 GGTGCCTTGCCATGTGCTA 60.679 57.895 7.54 0.13 42.00 3.49
3966 7511 1.508088 GTGCCTTGCCATGTGCTAC 59.492 57.895 7.54 0.00 42.00 3.58
3967 7512 2.039974 TGCCTTGCCATGTGCTACG 61.040 57.895 7.54 0.00 42.00 3.51
3968 7513 1.745115 GCCTTGCCATGTGCTACGA 60.745 57.895 7.54 0.00 42.00 3.43
3969 7514 1.097547 GCCTTGCCATGTGCTACGAT 61.098 55.000 7.54 0.00 42.00 3.73
3970 7515 1.382522 CCTTGCCATGTGCTACGATT 58.617 50.000 7.54 0.00 42.00 3.34
3971 7516 1.745087 CCTTGCCATGTGCTACGATTT 59.255 47.619 7.54 0.00 42.00 2.17
3972 7517 2.164219 CCTTGCCATGTGCTACGATTTT 59.836 45.455 7.54 0.00 42.00 1.82
3973 7518 3.367292 CCTTGCCATGTGCTACGATTTTT 60.367 43.478 7.54 0.00 42.00 1.94
4014 7559 5.767269 ACATAACGCATGTCAAATTTCACA 58.233 33.333 0.00 0.00 44.99 3.58
4015 7560 6.389091 ACATAACGCATGTCAAATTTCACAT 58.611 32.000 1.32 1.32 44.99 3.21
4016 7561 6.308524 ACATAACGCATGTCAAATTTCACATG 59.691 34.615 25.67 25.67 44.99 3.21
4022 7567 5.705902 CATGTCAAATTTCACATGCAGAGA 58.294 37.500 20.18 0.00 42.52 3.10
4023 7568 5.112220 TGTCAAATTTCACATGCAGAGAC 57.888 39.130 0.00 0.00 0.00 3.36
4024 7569 4.579753 TGTCAAATTTCACATGCAGAGACA 59.420 37.500 0.00 0.00 0.00 3.41
4025 7570 5.067544 TGTCAAATTTCACATGCAGAGACAA 59.932 36.000 0.00 0.00 30.32 3.18
4026 7571 5.978919 GTCAAATTTCACATGCAGAGACAAA 59.021 36.000 0.00 0.00 0.00 2.83
4027 7572 6.643770 GTCAAATTTCACATGCAGAGACAAAT 59.356 34.615 0.00 0.00 0.00 2.32
4028 7573 7.809331 GTCAAATTTCACATGCAGAGACAAATA 59.191 33.333 0.00 0.00 0.00 1.40
4029 7574 8.024865 TCAAATTTCACATGCAGAGACAAATAG 58.975 33.333 0.00 0.00 0.00 1.73
4030 7575 4.952262 TTCACATGCAGAGACAAATAGC 57.048 40.909 0.00 0.00 0.00 2.97
4031 7576 3.941573 TCACATGCAGAGACAAATAGCA 58.058 40.909 0.00 0.00 39.79 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 76 6.239120 CCGACCCTATTATCGAGAGGTTAAAA 60.239 42.308 0.00 0.00 40.86 1.52
508 516 0.531532 ATGCATGAGCCACGCTAGTC 60.532 55.000 0.00 0.00 39.88 2.59
522 530 3.346315 TGAGGTGTTCGATGAAATGCAT 58.654 40.909 0.00 0.00 40.77 3.96
523 531 2.777094 TGAGGTGTTCGATGAAATGCA 58.223 42.857 0.00 0.00 0.00 3.96
643 653 3.055094 ACCGAGACAAATGAGTTGCCTAT 60.055 43.478 0.00 0.00 41.31 2.57
644 654 2.301870 ACCGAGACAAATGAGTTGCCTA 59.698 45.455 0.00 0.00 41.31 3.93
841 851 0.901580 TCGTCCCGGTTCTTTAGCCT 60.902 55.000 0.00 0.00 0.00 4.58
866 876 0.392461 CACGAATCGGGACCAATGGT 60.392 55.000 3.74 3.74 39.44 3.55
879 889 0.037605 GTCCCGGTTCAGTCACGAAT 60.038 55.000 0.00 0.00 0.00 3.34
966 976 5.972382 TGCAACAAAAACTCGGTTTATGTAC 59.028 36.000 3.01 0.00 34.43 2.90
992 1004 1.541147 CAATGGACACCTTGCAATCGT 59.459 47.619 0.00 0.00 0.00 3.73
1006 1018 5.517924 TCCCTTCTTAATTGCATCAATGGA 58.482 37.500 0.00 0.00 34.04 3.41
1019 1031 3.073062 ACTTGCTGAGCTTCCCTTCTTAA 59.927 43.478 5.83 0.00 0.00 1.85
1024 1038 2.234143 GAAACTTGCTGAGCTTCCCTT 58.766 47.619 5.83 0.00 0.00 3.95
1120 1135 6.239176 CCATACCCTAACAAAACTTTGCAAGA 60.239 38.462 0.00 0.00 41.79 3.02
1167 1211 0.613777 ACAAGATCACCGGGAAGTCC 59.386 55.000 6.32 0.00 0.00 3.85
1168 1212 3.821421 ATACAAGATCACCGGGAAGTC 57.179 47.619 6.32 0.00 0.00 3.01
1170 1214 4.137116 TGAATACAAGATCACCGGGAAG 57.863 45.455 6.32 0.00 0.00 3.46
1171 1215 4.444306 GGATGAATACAAGATCACCGGGAA 60.444 45.833 6.32 0.00 0.00 3.97
1473 1555 5.789054 AGGGAGTGGTAGGTAACAAAGTTAT 59.211 40.000 0.00 0.00 41.41 1.89
1491 1575 0.921896 CATTGTGGGATGGAGGGAGT 59.078 55.000 0.00 0.00 0.00 3.85
1492 1576 0.921896 ACATTGTGGGATGGAGGGAG 59.078 55.000 0.00 0.00 0.00 4.30
1493 1577 2.126882 CTACATTGTGGGATGGAGGGA 58.873 52.381 0.00 0.00 34.85 4.20
1494 1578 2.645838 CTACATTGTGGGATGGAGGG 57.354 55.000 0.00 0.00 34.85 4.30
1496 1580 2.483714 CGTCCTACATTGTGGGATGGAG 60.484 54.545 25.95 14.59 44.58 3.86
1497 1581 1.484653 CGTCCTACATTGTGGGATGGA 59.515 52.381 25.95 11.51 44.58 3.41
1498 1582 1.953559 CGTCCTACATTGTGGGATGG 58.046 55.000 25.95 17.11 44.58 3.51
1501 1585 3.495434 AAAACGTCCTACATTGTGGGA 57.505 42.857 17.14 17.14 40.84 4.37
1519 1603 6.274579 TCCGTCGCATAGTATATGTCAAAAA 58.725 36.000 0.00 0.00 0.00 1.94
1520 1604 5.834169 TCCGTCGCATAGTATATGTCAAAA 58.166 37.500 0.00 0.00 0.00 2.44
1521 1605 5.441709 TCCGTCGCATAGTATATGTCAAA 57.558 39.130 0.00 0.00 0.00 2.69
1522 1606 4.082949 CCTCCGTCGCATAGTATATGTCAA 60.083 45.833 0.00 0.00 0.00 3.18
1524 1608 3.181499 CCCTCCGTCGCATAGTATATGTC 60.181 52.174 0.00 0.00 0.00 3.06
1525 1609 2.753452 CCCTCCGTCGCATAGTATATGT 59.247 50.000 0.00 0.00 0.00 2.29
1526 1610 3.014623 TCCCTCCGTCGCATAGTATATG 58.985 50.000 0.00 0.00 0.00 1.78
1527 1611 3.280295 CTCCCTCCGTCGCATAGTATAT 58.720 50.000 0.00 0.00 0.00 0.86
1528 1612 2.039480 ACTCCCTCCGTCGCATAGTATA 59.961 50.000 0.00 0.00 0.00 1.47
1529 1613 1.202903 ACTCCCTCCGTCGCATAGTAT 60.203 52.381 0.00 0.00 0.00 2.12
1530 1614 0.182061 ACTCCCTCCGTCGCATAGTA 59.818 55.000 0.00 0.00 0.00 1.82
1531 1615 0.182061 TACTCCCTCCGTCGCATAGT 59.818 55.000 0.00 0.00 0.00 2.12
1532 1616 0.875728 CTACTCCCTCCGTCGCATAG 59.124 60.000 0.00 0.00 0.00 2.23
1535 1619 0.035152 TAACTACTCCCTCCGTCGCA 60.035 55.000 0.00 0.00 0.00 5.10
1536 1620 1.316651 ATAACTACTCCCTCCGTCGC 58.683 55.000 0.00 0.00 0.00 5.19
1537 1621 3.251972 GGTAATAACTACTCCCTCCGTCG 59.748 52.174 0.00 0.00 0.00 5.12
1538 1622 4.468713 AGGTAATAACTACTCCCTCCGTC 58.531 47.826 0.00 0.00 0.00 4.79
1539 1623 4.533001 AGGTAATAACTACTCCCTCCGT 57.467 45.455 0.00 0.00 0.00 4.69
1540 1624 5.380043 TGTAGGTAATAACTACTCCCTCCG 58.620 45.833 15.61 0.00 41.03 4.63
1592 1759 8.796475 CAGAATGTATTCTTTCCAAAAGGAGAA 58.204 33.333 4.43 0.00 44.28 2.87
1593 1760 7.094205 GCAGAATGTATTCTTTCCAAAAGGAGA 60.094 37.037 4.43 0.00 44.28 3.71
1594 1761 7.031975 GCAGAATGTATTCTTTCCAAAAGGAG 58.968 38.462 4.43 0.00 44.28 3.69
1595 1762 6.493115 TGCAGAATGTATTCTTTCCAAAAGGA 59.507 34.615 4.43 0.00 44.28 3.36
1596 1763 6.690530 TGCAGAATGTATTCTTTCCAAAAGG 58.309 36.000 4.43 0.00 44.28 3.11
1597 1764 7.201496 GCATGCAGAATGTATTCTTTCCAAAAG 60.201 37.037 14.21 0.00 44.28 2.27
1598 1765 6.591062 GCATGCAGAATGTATTCTTTCCAAAA 59.409 34.615 14.21 0.00 44.28 2.44
1600 1767 5.185442 TGCATGCAGAATGTATTCTTTCCAA 59.815 36.000 18.46 0.00 44.28 3.53
1602 1769 5.163581 ACTGCATGCAGAATGTATTCTTTCC 60.164 40.000 45.50 0.90 44.28 3.13
1604 1771 5.909621 ACTGCATGCAGAATGTATTCTTT 57.090 34.783 45.50 21.66 44.28 2.52
1606 1773 5.191426 AGAACTGCATGCAGAATGTATTCT 58.809 37.500 45.50 36.31 38.69 2.40
1607 1774 5.496133 AGAACTGCATGCAGAATGTATTC 57.504 39.130 45.50 35.02 38.69 1.75
1608 1775 5.909621 AAGAACTGCATGCAGAATGTATT 57.090 34.783 45.50 30.81 38.69 1.89
1609 1776 5.651139 AGAAAGAACTGCATGCAGAATGTAT 59.349 36.000 45.50 28.37 44.27 2.29
1610 1777 5.005740 AGAAAGAACTGCATGCAGAATGTA 58.994 37.500 45.50 13.04 46.30 2.29
1612 1779 4.166523 CAGAAAGAACTGCATGCAGAATG 58.833 43.478 45.50 28.09 46.30 2.67
1613 1780 4.436242 CAGAAAGAACTGCATGCAGAAT 57.564 40.909 45.50 34.20 46.30 2.40
1635 1802 2.093869 CCAATTGCCCATGAAGAACTGG 60.094 50.000 0.00 0.00 0.00 4.00
1689 1865 6.452494 TCTTTTCCACTAGACGGAATAGAG 57.548 41.667 22.37 17.33 42.25 2.43
1698 1874 4.333926 GGTGCATGATCTTTTCCACTAGAC 59.666 45.833 0.00 0.00 0.00 2.59
1836 2457 9.836179 ACATCTCTTCTAGAATACCTATGGATT 57.164 33.333 5.44 0.00 37.89 3.01
1837 2458 9.836179 AACATCTCTTCTAGAATACCTATGGAT 57.164 33.333 5.44 0.00 37.89 3.41
1838 2459 9.083422 CAACATCTCTTCTAGAATACCTATGGA 57.917 37.037 5.44 0.00 37.89 3.41
1908 2543 3.310246 GCTAGCTAGCTTGTTACCGATC 58.690 50.000 33.71 4.59 45.62 3.69
1921 2556 0.737367 TGTGCGCAACAGCTAGCTAG 60.737 55.000 18.86 16.84 38.13 3.42
1922 2557 0.108186 ATGTGCGCAACAGCTAGCTA 60.108 50.000 18.86 0.00 43.64 3.32
2062 5404 1.621814 GCGCAGGGGGTATGTATAGAA 59.378 52.381 0.30 0.00 0.00 2.10
2064 5406 0.108804 CGCGCAGGGGGTATGTATAG 60.109 60.000 8.75 0.00 36.55 1.31
2067 5409 4.230002 GCGCGCAGGGGGTATGTA 62.230 66.667 29.10 0.00 42.39 2.29
2127 5494 2.467566 TGGAGAAAGGGAAACTACGC 57.532 50.000 0.00 0.00 0.00 4.42
2209 5587 2.480419 CACGTTGACATCCTTCAGGTTC 59.520 50.000 0.00 0.00 36.34 3.62
2328 5706 0.515564 CATGAACGTTTCGTCCCACC 59.484 55.000 0.46 0.00 39.99 4.61
2610 6009 0.747255 CGACCCTTCGTCCTGATGAT 59.253 55.000 0.00 0.00 40.61 2.45
2611 6010 2.189833 CGACCCTTCGTCCTGATGA 58.810 57.895 0.00 0.00 40.61 2.92
2612 6011 4.814900 CGACCCTTCGTCCTGATG 57.185 61.111 0.00 0.00 40.61 3.07
2628 6027 3.680786 TGGAGTCGTCCCAGCACG 61.681 66.667 0.00 0.00 43.15 5.34
3013 6418 8.311120 GTCAAGTTTTTATTCAAGTTTGACGTG 58.689 33.333 0.00 0.00 36.83 4.49
3075 6484 1.483415 GAGTGGCGGAATGTACCCTAA 59.517 52.381 0.00 0.00 0.00 2.69
3090 6534 4.337145 AGACAAGTAGACTACAGGAGTGG 58.663 47.826 14.95 0.00 39.06 4.00
3134 6585 4.641094 ACAACACAATAGACCCGTCAAAAA 59.359 37.500 0.00 0.00 0.00 1.94
3135 6586 4.200874 ACAACACAATAGACCCGTCAAAA 58.799 39.130 0.00 0.00 0.00 2.44
3136 6587 3.810941 GACAACACAATAGACCCGTCAAA 59.189 43.478 0.00 0.00 0.00 2.69
3137 6588 3.181464 TGACAACACAATAGACCCGTCAA 60.181 43.478 0.00 0.00 0.00 3.18
3138 6589 2.365941 TGACAACACAATAGACCCGTCA 59.634 45.455 0.00 0.00 0.00 4.35
3139 6590 2.735134 GTGACAACACAATAGACCCGTC 59.265 50.000 0.00 0.00 45.32 4.79
3140 6591 2.762745 GTGACAACACAATAGACCCGT 58.237 47.619 0.00 0.00 45.32 5.28
3152 6603 2.024022 GCGCGCAAAGTGACAACA 59.976 55.556 29.10 0.00 0.00 3.33
3158 6609 2.462255 AATGGACAGCGCGCAAAGTG 62.462 55.000 35.10 24.60 0.00 3.16
3164 6615 4.824166 CTGCAATGGACAGCGCGC 62.824 66.667 26.66 26.66 0.00 6.86
3186 6637 6.183360 GGAGAAAGAACCGATTAAGCAAGTAC 60.183 42.308 0.00 0.00 0.00 2.73
3188 6639 4.695928 GGAGAAAGAACCGATTAAGCAAGT 59.304 41.667 0.00 0.00 0.00 3.16
3190 6641 4.695455 CAGGAGAAAGAACCGATTAAGCAA 59.305 41.667 0.00 0.00 0.00 3.91
3192 6643 4.093556 CACAGGAGAAAGAACCGATTAAGC 59.906 45.833 0.00 0.00 0.00 3.09
3194 6645 5.011738 ACTCACAGGAGAAAGAACCGATTAA 59.988 40.000 0.00 0.00 44.26 1.40
3198 6649 2.035961 CACTCACAGGAGAAAGAACCGA 59.964 50.000 0.00 0.00 44.26 4.69
3199 6650 2.035961 TCACTCACAGGAGAAAGAACCG 59.964 50.000 0.00 0.00 44.26 4.44
3200 6651 3.753294 TCACTCACAGGAGAAAGAACC 57.247 47.619 0.00 0.00 44.26 3.62
3201 6652 7.442666 AGTTTAATCACTCACAGGAGAAAGAAC 59.557 37.037 0.00 0.00 44.26 3.01
3202 6653 7.509546 AGTTTAATCACTCACAGGAGAAAGAA 58.490 34.615 0.00 0.00 44.26 2.52
3204 6655 7.442364 TGAAGTTTAATCACTCACAGGAGAAAG 59.558 37.037 0.00 0.00 44.26 2.62
3206 6657 6.826668 TGAAGTTTAATCACTCACAGGAGAA 58.173 36.000 0.00 0.00 44.26 2.87
3207 6658 6.419484 TGAAGTTTAATCACTCACAGGAGA 57.581 37.500 0.00 0.00 44.26 3.71
3208 6659 7.496529 TTTGAAGTTTAATCACTCACAGGAG 57.503 36.000 0.00 0.00 46.96 3.69
3209 6660 8.463930 AATTTGAAGTTTAATCACTCACAGGA 57.536 30.769 0.00 0.00 0.00 3.86
3223 6674 9.191995 CCGATTAAGCAAGTAAATTTGAAGTTT 57.808 29.630 0.00 0.00 0.00 2.66
3225 6676 7.882179 ACCGATTAAGCAAGTAAATTTGAAGT 58.118 30.769 0.00 0.00 0.00 3.01
3226 6677 8.742554 AACCGATTAAGCAAGTAAATTTGAAG 57.257 30.769 0.00 0.00 0.00 3.02
3229 6680 7.312899 AGGAACCGATTAAGCAAGTAAATTTG 58.687 34.615 0.00 0.00 0.00 2.32
3230 6681 7.462571 AGGAACCGATTAAGCAAGTAAATTT 57.537 32.000 0.00 0.00 0.00 1.82
3231 6682 7.393515 AGAAGGAACCGATTAAGCAAGTAAATT 59.606 33.333 0.00 0.00 0.00 1.82
3232 6683 6.884836 AGAAGGAACCGATTAAGCAAGTAAAT 59.115 34.615 0.00 0.00 0.00 1.40
3233 6684 6.235664 AGAAGGAACCGATTAAGCAAGTAAA 58.764 36.000 0.00 0.00 0.00 2.01
3249 6732 3.971245 ATCACTCACAGGAGAAGGAAC 57.029 47.619 0.00 0.00 44.26 3.62
3344 6828 3.311871 GGATCGACGCTCTAACACTTAGA 59.688 47.826 0.00 0.00 39.83 2.10
3346 6830 3.011818 TGGATCGACGCTCTAACACTTA 58.988 45.455 0.00 0.00 0.00 2.24
3359 6843 5.799936 CCAATAAACATTGTTGTGGATCGAC 59.200 40.000 16.61 0.12 35.83 4.20
3423 6948 2.571653 TGAGTTCGATCCATTGACCCTT 59.428 45.455 0.00 0.00 0.00 3.95
3432 6957 2.985957 TGCATCATGAGTTCGATCCA 57.014 45.000 0.09 0.00 0.00 3.41
3474 6999 0.108329 GGATTCTCTTCCGCGGTGAA 60.108 55.000 27.15 22.92 0.00 3.18
3507 7032 7.391148 TGTTATCCTTATGCTCCTTTTGAAC 57.609 36.000 0.00 0.00 0.00 3.18
3527 7054 1.621317 TGATCAGGCTCACCGTTGTTA 59.379 47.619 0.00 0.00 42.76 2.41
3533 7060 0.034059 GGGTATGATCAGGCTCACCG 59.966 60.000 0.09 0.00 42.76 4.94
3547 7074 3.134081 CAGGTTTGAGTACATCCGGGTAT 59.866 47.826 0.00 0.00 0.00 2.73
3593 7121 5.461032 TGGTTTGTCTTGTTCAAGTTGTT 57.539 34.783 11.52 0.00 0.00 2.83
3626 7154 3.195396 ACCAACTGACAAATGCAAAGTGT 59.805 39.130 0.00 0.00 0.00 3.55
3650 7195 2.957680 TGCACAAGTGTTCCATGACATT 59.042 40.909 0.00 0.00 0.00 2.71
3675 7220 6.702723 CCGTGGATATTCGTTTGTTATTCCTA 59.297 38.462 0.00 0.00 0.00 2.94
3689 7234 2.032030 CGTTGCAATCCCGTGGATATTC 60.032 50.000 0.59 0.83 42.27 1.75
3695 7240 1.024046 TGATCGTTGCAATCCCGTGG 61.024 55.000 0.59 0.00 0.00 4.94
3707 7252 0.178975 TTTGGCACCCCTTGATCGTT 60.179 50.000 0.00 0.00 0.00 3.85
3758 7303 3.817647 ACAACCTTCTCTTCAACTCATGC 59.182 43.478 0.00 0.00 0.00 4.06
3815 7360 6.540083 AGTAGCCTGTAATGTGGTAGTTTTT 58.460 36.000 0.00 0.00 0.00 1.94
3816 7361 6.123045 AGTAGCCTGTAATGTGGTAGTTTT 57.877 37.500 0.00 0.00 0.00 2.43
3817 7362 5.757099 AGTAGCCTGTAATGTGGTAGTTT 57.243 39.130 0.00 0.00 0.00 2.66
3818 7363 5.956563 ACTAGTAGCCTGTAATGTGGTAGTT 59.043 40.000 0.00 0.00 0.00 2.24
3819 7364 5.516984 ACTAGTAGCCTGTAATGTGGTAGT 58.483 41.667 0.00 0.00 0.00 2.73
3820 7365 6.996879 TCTACTAGTAGCCTGTAATGTGGTAG 59.003 42.308 22.87 0.00 33.32 3.18
3821 7366 6.903516 TCTACTAGTAGCCTGTAATGTGGTA 58.096 40.000 22.87 0.10 33.32 3.25
3822 7367 5.763355 TCTACTAGTAGCCTGTAATGTGGT 58.237 41.667 22.87 0.00 33.32 4.16
3823 7368 6.710597 TTCTACTAGTAGCCTGTAATGTGG 57.289 41.667 22.87 0.00 33.32 4.17
3824 7369 6.642950 GCATTCTACTAGTAGCCTGTAATGTG 59.357 42.308 26.29 14.70 30.98 3.21
3825 7370 6.239345 GGCATTCTACTAGTAGCCTGTAATGT 60.239 42.308 26.29 6.11 39.02 2.71
3826 7371 6.159988 GGCATTCTACTAGTAGCCTGTAATG 58.840 44.000 23.97 23.97 39.02 1.90
3827 7372 5.246429 GGGCATTCTACTAGTAGCCTGTAAT 59.754 44.000 22.87 14.51 41.71 1.89
3828 7373 4.587684 GGGCATTCTACTAGTAGCCTGTAA 59.412 45.833 22.87 13.00 41.71 2.41
3829 7374 4.150359 GGGCATTCTACTAGTAGCCTGTA 58.850 47.826 22.87 4.72 41.71 2.74
3830 7375 2.966516 GGGCATTCTACTAGTAGCCTGT 59.033 50.000 22.87 7.50 41.71 4.00
3831 7376 2.029828 CGGGCATTCTACTAGTAGCCTG 60.030 54.545 22.87 21.10 41.71 4.85
3832 7377 2.240279 CGGGCATTCTACTAGTAGCCT 58.760 52.381 22.87 10.86 41.71 4.58
3833 7378 1.962100 ACGGGCATTCTACTAGTAGCC 59.038 52.381 22.87 20.37 41.29 3.93
3834 7379 2.862921 GCACGGGCATTCTACTAGTAGC 60.863 54.545 22.87 13.16 40.72 3.58
3835 7380 2.604855 CGCACGGGCATTCTACTAGTAG 60.605 54.545 21.87 21.87 41.24 2.57
3836 7381 1.335810 CGCACGGGCATTCTACTAGTA 59.664 52.381 11.77 1.89 41.24 1.82
3837 7382 0.102481 CGCACGGGCATTCTACTAGT 59.898 55.000 11.77 0.00 41.24 2.57
3838 7383 0.102481 ACGCACGGGCATTCTACTAG 59.898 55.000 11.77 0.00 41.24 2.57
3839 7384 0.533491 AACGCACGGGCATTCTACTA 59.467 50.000 11.77 0.00 41.24 1.82
3840 7385 1.019278 CAACGCACGGGCATTCTACT 61.019 55.000 11.77 0.00 41.24 2.57
3841 7386 1.423845 CAACGCACGGGCATTCTAC 59.576 57.895 11.77 0.00 41.24 2.59
3842 7387 2.395360 GCAACGCACGGGCATTCTA 61.395 57.895 11.77 0.00 41.24 2.10
3843 7388 3.737172 GCAACGCACGGGCATTCT 61.737 61.111 11.77 0.00 41.24 2.40
3844 7389 4.776647 GGCAACGCACGGGCATTC 62.777 66.667 11.77 0.00 41.24 2.67
3860 7405 5.468409 ACAAAAATATTTCAAAAGCCCGTGG 59.532 36.000 0.10 0.00 0.00 4.94
3861 7406 6.538189 ACAAAAATATTTCAAAAGCCCGTG 57.462 33.333 0.10 0.00 0.00 4.94
3862 7407 6.763610 TCAACAAAAATATTTCAAAAGCCCGT 59.236 30.769 0.10 0.00 0.00 5.28
3863 7408 7.042119 ACTCAACAAAAATATTTCAAAAGCCCG 60.042 33.333 0.10 0.00 0.00 6.13
3864 7409 8.153479 ACTCAACAAAAATATTTCAAAAGCCC 57.847 30.769 0.10 0.00 0.00 5.19
3865 7410 9.437045 CAACTCAACAAAAATATTTCAAAAGCC 57.563 29.630 0.10 0.00 0.00 4.35
3866 7411 9.986833 ACAACTCAACAAAAATATTTCAAAAGC 57.013 25.926 0.10 0.00 0.00 3.51
3880 7425 8.387354 CGCATTATGTCTATACAACTCAACAAA 58.613 33.333 0.00 0.00 39.58 2.83
3881 7426 7.547722 ACGCATTATGTCTATACAACTCAACAA 59.452 33.333 0.00 0.00 39.58 2.83
3882 7427 7.039270 ACGCATTATGTCTATACAACTCAACA 58.961 34.615 0.00 0.00 39.58 3.33
3883 7428 7.464830 ACGCATTATGTCTATACAACTCAAC 57.535 36.000 0.00 0.00 39.58 3.18
3884 7429 9.589111 TTTACGCATTATGTCTATACAACTCAA 57.411 29.630 0.00 0.00 39.58 3.02
3885 7430 9.027129 GTTTACGCATTATGTCTATACAACTCA 57.973 33.333 0.00 0.00 39.58 3.41
3886 7431 9.245962 AGTTTACGCATTATGTCTATACAACTC 57.754 33.333 0.00 0.00 39.58 3.01
3887 7432 9.595823 AAGTTTACGCATTATGTCTATACAACT 57.404 29.630 0.00 0.00 39.58 3.16
3890 7435 9.589111 TGAAAGTTTACGCATTATGTCTATACA 57.411 29.630 0.00 0.00 40.69 2.29
3891 7436 9.845305 GTGAAAGTTTACGCATTATGTCTATAC 57.155 33.333 0.00 0.00 0.00 1.47
3892 7437 9.589111 TGTGAAAGTTTACGCATTATGTCTATA 57.411 29.630 0.00 0.00 0.00 1.31
3893 7438 8.487313 TGTGAAAGTTTACGCATTATGTCTAT 57.513 30.769 0.00 0.00 0.00 1.98
3894 7439 7.892778 TGTGAAAGTTTACGCATTATGTCTA 57.107 32.000 0.00 0.00 0.00 2.59
3895 7440 6.795098 TGTGAAAGTTTACGCATTATGTCT 57.205 33.333 0.00 0.00 0.00 3.41
3896 7441 7.021196 ACATGTGAAAGTTTACGCATTATGTC 58.979 34.615 0.00 0.00 35.49 3.06
3897 7442 6.908825 ACATGTGAAAGTTTACGCATTATGT 58.091 32.000 0.00 6.91 35.49 2.29
3898 7443 8.387354 TCTACATGTGAAAGTTTACGCATTATG 58.613 33.333 9.11 0.00 35.49 1.90
3899 7444 8.487313 TCTACATGTGAAAGTTTACGCATTAT 57.513 30.769 9.11 6.15 35.49 1.28
3900 7445 7.815549 TCTCTACATGTGAAAGTTTACGCATTA 59.184 33.333 9.11 7.02 35.49 1.90
3901 7446 6.649141 TCTCTACATGTGAAAGTTTACGCATT 59.351 34.615 9.11 6.51 35.49 3.56
3902 7447 6.163476 TCTCTACATGTGAAAGTTTACGCAT 58.837 36.000 9.11 7.74 37.66 4.73
3903 7448 5.534407 TCTCTACATGTGAAAGTTTACGCA 58.466 37.500 9.11 0.00 0.00 5.24
3904 7449 6.648725 ATCTCTACATGTGAAAGTTTACGC 57.351 37.500 9.11 0.00 0.00 4.42
3905 7450 9.569167 TCTTATCTCTACATGTGAAAGTTTACG 57.431 33.333 9.11 0.00 0.00 3.18
3909 7454 9.757227 GCTATCTTATCTCTACATGTGAAAGTT 57.243 33.333 9.11 1.21 0.00 2.66
3910 7455 8.918116 TGCTATCTTATCTCTACATGTGAAAGT 58.082 33.333 9.11 0.00 0.00 2.66
3911 7456 9.190858 GTGCTATCTTATCTCTACATGTGAAAG 57.809 37.037 9.11 3.13 0.00 2.62
3912 7457 7.862873 CGTGCTATCTTATCTCTACATGTGAAA 59.137 37.037 9.11 0.00 0.00 2.69
3913 7458 7.363431 CGTGCTATCTTATCTCTACATGTGAA 58.637 38.462 9.11 0.00 0.00 3.18
3914 7459 6.072452 CCGTGCTATCTTATCTCTACATGTGA 60.072 42.308 9.11 3.24 0.00 3.58
3915 7460 6.089476 CCGTGCTATCTTATCTCTACATGTG 58.911 44.000 9.11 0.00 0.00 3.21
3916 7461 5.184096 CCCGTGCTATCTTATCTCTACATGT 59.816 44.000 2.69 2.69 0.00 3.21
3917 7462 5.416013 TCCCGTGCTATCTTATCTCTACATG 59.584 44.000 0.00 0.00 0.00 3.21
3918 7463 5.571285 TCCCGTGCTATCTTATCTCTACAT 58.429 41.667 0.00 0.00 0.00 2.29
3919 7464 4.981812 TCCCGTGCTATCTTATCTCTACA 58.018 43.478 0.00 0.00 0.00 2.74
3920 7465 5.961396 TTCCCGTGCTATCTTATCTCTAC 57.039 43.478 0.00 0.00 0.00 2.59
3921 7466 6.010850 ACATTCCCGTGCTATCTTATCTCTA 58.989 40.000 0.00 0.00 0.00 2.43
3922 7467 4.835615 ACATTCCCGTGCTATCTTATCTCT 59.164 41.667 0.00 0.00 0.00 3.10
3923 7468 5.140747 ACATTCCCGTGCTATCTTATCTC 57.859 43.478 0.00 0.00 0.00 2.75
3924 7469 4.321304 CGACATTCCCGTGCTATCTTATCT 60.321 45.833 0.00 0.00 0.00 1.98
3925 7470 3.921021 CGACATTCCCGTGCTATCTTATC 59.079 47.826 0.00 0.00 0.00 1.75
3926 7471 3.306088 CCGACATTCCCGTGCTATCTTAT 60.306 47.826 0.00 0.00 0.00 1.73
3927 7472 2.035449 CCGACATTCCCGTGCTATCTTA 59.965 50.000 0.00 0.00 0.00 2.10
3928 7473 1.202533 CCGACATTCCCGTGCTATCTT 60.203 52.381 0.00 0.00 0.00 2.40
3929 7474 0.389391 CCGACATTCCCGTGCTATCT 59.611 55.000 0.00 0.00 0.00 1.98
3930 7475 0.104304 ACCGACATTCCCGTGCTATC 59.896 55.000 0.00 0.00 0.00 2.08
3931 7476 0.179084 CACCGACATTCCCGTGCTAT 60.179 55.000 0.00 0.00 0.00 2.97
3932 7477 1.216977 CACCGACATTCCCGTGCTA 59.783 57.895 0.00 0.00 0.00 3.49
3933 7478 2.047274 CACCGACATTCCCGTGCT 60.047 61.111 0.00 0.00 0.00 4.40
3934 7479 3.799755 GCACCGACATTCCCGTGC 61.800 66.667 0.00 0.00 0.00 5.34
3935 7480 3.124921 GGCACCGACATTCCCGTG 61.125 66.667 0.00 0.00 0.00 4.94
3936 7481 2.890766 AAGGCACCGACATTCCCGT 61.891 57.895 0.00 0.00 0.00 5.28
3937 7482 2.046314 AAGGCACCGACATTCCCG 60.046 61.111 0.00 0.00 0.00 5.14
3938 7483 2.700773 GCAAGGCACCGACATTCCC 61.701 63.158 0.00 0.00 0.00 3.97
3939 7484 2.700773 GGCAAGGCACCGACATTCC 61.701 63.158 0.00 0.00 0.00 3.01
3940 7485 1.315257 ATGGCAAGGCACCGACATTC 61.315 55.000 0.00 0.00 0.00 2.67
3941 7486 1.304381 ATGGCAAGGCACCGACATT 60.304 52.632 0.00 0.00 0.00 2.71
3942 7487 2.048023 CATGGCAAGGCACCGACAT 61.048 57.895 0.00 0.00 0.00 3.06
3943 7488 2.672651 CATGGCAAGGCACCGACA 60.673 61.111 0.00 0.00 0.00 4.35
3944 7489 2.672996 ACATGGCAAGGCACCGAC 60.673 61.111 0.00 0.00 0.00 4.79
3945 7490 2.672651 CACATGGCAAGGCACCGA 60.673 61.111 0.00 0.00 0.00 4.69
3946 7491 4.424566 GCACATGGCAAGGCACCG 62.425 66.667 0.00 0.00 43.97 4.94
3973 7518 9.710979 GCGTTATGTTTACATAATTCTAGCAAA 57.289 29.630 15.99 0.00 46.63 3.68
3974 7519 8.884726 TGCGTTATGTTTACATAATTCTAGCAA 58.115 29.630 15.99 7.62 46.63 3.91
3975 7520 8.426881 TGCGTTATGTTTACATAATTCTAGCA 57.573 30.769 15.99 17.04 46.63 3.49
3976 7521 9.318041 CATGCGTTATGTTTACATAATTCTAGC 57.682 33.333 15.99 15.40 46.63 3.42
3992 7537 6.688601 CATGTGAAATTTGACATGCGTTATG 58.311 36.000 29.40 12.69 43.68 1.90
3993 7538 6.874297 CATGTGAAATTTGACATGCGTTAT 57.126 33.333 29.40 5.12 43.68 1.89
4000 7545 5.242171 TGTCTCTGCATGTGAAATTTGACAT 59.758 36.000 16.36 16.36 35.36 3.06
4001 7546 4.579753 TGTCTCTGCATGTGAAATTTGACA 59.420 37.500 12.95 12.95 0.00 3.58
4002 7547 5.112220 TGTCTCTGCATGTGAAATTTGAC 57.888 39.130 0.27 0.27 0.00 3.18
4003 7548 5.771153 TTGTCTCTGCATGTGAAATTTGA 57.229 34.783 0.00 0.00 0.00 2.69
4004 7549 7.201410 GCTATTTGTCTCTGCATGTGAAATTTG 60.201 37.037 0.00 0.00 0.00 2.32
4005 7550 6.810182 GCTATTTGTCTCTGCATGTGAAATTT 59.190 34.615 0.00 0.00 0.00 1.82
4006 7551 6.071784 TGCTATTTGTCTCTGCATGTGAAATT 60.072 34.615 0.00 0.00 0.00 1.82
4007 7552 5.416639 TGCTATTTGTCTCTGCATGTGAAAT 59.583 36.000 0.00 0.00 0.00 2.17
4008 7553 4.761227 TGCTATTTGTCTCTGCATGTGAAA 59.239 37.500 0.00 0.00 0.00 2.69
4009 7554 4.325972 TGCTATTTGTCTCTGCATGTGAA 58.674 39.130 0.00 0.00 0.00 3.18
4010 7555 3.941573 TGCTATTTGTCTCTGCATGTGA 58.058 40.909 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.