Multiple sequence alignment - TraesCS2A01G115400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G115400 chr2A 100.000 3029 0 0 1 3029 65823924 65820896 0.000000e+00 5594.0
1 TraesCS2A01G115400 chr2A 100.000 1595 0 0 3408 5002 65820517 65818923 0.000000e+00 2946.0
2 TraesCS2A01G115400 chr2A 85.851 523 58 11 1715 2235 24300484 24300992 4.730000e-150 542.0
3 TraesCS2A01G115400 chr2A 100.000 112 0 0 5263 5374 65818662 65818551 1.960000e-49 207.0
4 TraesCS2A01G115400 chr2A 88.344 163 14 3 2395 2553 65821386 65821225 1.980000e-44 191.0
5 TraesCS2A01G115400 chr2A 88.344 163 14 3 2539 2700 65821530 65821372 1.980000e-44 191.0
6 TraesCS2A01G115400 chr2A 76.849 311 60 6 2672 2976 65821214 65820910 1.200000e-36 165.0
7 TraesCS2A01G115400 chr2A 85.000 120 12 3 3410 3529 65821014 65820901 3.400000e-22 117.0
8 TraesCS2A01G115400 chr2B 93.644 1479 89 3 1540 3017 101489518 101488044 0.000000e+00 2206.0
9 TraesCS2A01G115400 chr2B 92.569 1413 84 11 3459 4865 101487624 101486227 0.000000e+00 2008.0
10 TraesCS2A01G115400 chr2B 82.410 614 86 14 1715 2326 39195089 39194496 2.870000e-142 516.0
11 TraesCS2A01G115400 chr2B 85.206 534 38 18 2 529 101494660 101494162 1.340000e-140 510.0
12 TraesCS2A01G115400 chr2B 77.676 654 118 21 2381 3017 101488608 101487966 1.830000e-99 374.0
13 TraesCS2A01G115400 chr2B 87.755 245 18 4 720 954 101490878 101490636 5.300000e-70 276.0
14 TraesCS2A01G115400 chr2B 80.000 330 50 10 2708 3029 101488392 101488071 4.190000e-56 230.0
15 TraesCS2A01G115400 chr2B 82.403 233 31 8 3410 3640 101488189 101487965 1.530000e-45 195.0
16 TraesCS2A01G115400 chr2B 89.172 157 12 3 2539 2694 101488663 101488511 1.980000e-44 191.0
17 TraesCS2A01G115400 chr2B 85.632 174 19 3 3410 3583 101488111 101487944 1.540000e-40 178.0
18 TraesCS2A01G115400 chr2B 92.727 110 7 1 579 688 101491057 101490949 2.000000e-34 158.0
19 TraesCS2A01G115400 chr2B 79.907 214 40 3 2722 2935 39194472 39194262 2.590000e-33 154.0
20 TraesCS2A01G115400 chr2B 78.667 225 42 2 3413 3637 101488225 101488007 1.560000e-30 145.0
21 TraesCS2A01G115400 chr2B 84.672 137 21 0 2879 3015 101487624 101487488 2.610000e-28 137.0
22 TraesCS2A01G115400 chr2B 90.526 95 6 1 3408 3502 101488035 101487944 7.310000e-24 122.0
23 TraesCS2A01G115400 chr2B 93.878 49 3 0 5326 5374 101458850 101458802 2.080000e-09 75.0
24 TraesCS2A01G115400 chr2B 90.385 52 4 1 1494 1545 101489743 101489693 3.470000e-07 67.6
25 TraesCS2A01G115400 chr2D 88.054 1716 154 31 1328 3029 68924461 68922783 0.000000e+00 1986.0
26 TraesCS2A01G115400 chr2D 88.502 1609 128 25 3408 5002 68922420 68920855 0.000000e+00 1893.0
27 TraesCS2A01G115400 chr2D 87.761 719 52 16 2 719 68925628 68924945 0.000000e+00 808.0
28 TraesCS2A01G115400 chr2D 84.676 633 77 16 2381 3003 68923353 68922731 9.890000e-172 614.0
29 TraesCS2A01G115400 chr2D 85.141 498 59 6 1715 2212 22503109 22503591 3.740000e-136 496.0
30 TraesCS2A01G115400 chr2D 89.677 310 32 0 2708 3017 68923065 68922756 3.900000e-106 396.0
31 TraesCS2A01G115400 chr2D 78.075 561 97 21 2381 2925 68923281 68922731 1.120000e-86 331.0
32 TraesCS2A01G115400 chr2D 89.552 201 18 1 2500 2700 68923375 68923178 8.940000e-63 252.0
33 TraesCS2A01G115400 chr2D 88.344 163 7 4 1140 1290 68924604 68924442 9.190000e-43 185.0
34 TraesCS2A01G115400 chr2D 83.432 169 25 1 2850 3015 68922398 68922230 2.590000e-33 154.0
35 TraesCS2A01G115400 chr2D 77.344 256 53 3 2764 3015 68922445 68922191 4.340000e-31 147.0
36 TraesCS2A01G115400 chr2D 89.091 110 11 1 5265 5374 68920807 68920699 9.390000e-28 135.0
37 TraesCS2A01G115400 chr2D 79.688 192 29 4 2750 2935 68922420 68922233 4.370000e-26 130.0
38 TraesCS2A01G115400 chr2D 80.864 162 28 3 2722 2883 22503723 22503881 2.030000e-24 124.0
39 TraesCS2A01G115400 chr2D 89.583 96 7 2 3410 3505 68922823 68922731 9.460000e-23 119.0
40 TraesCS2A01G115400 chr3D 76.792 293 47 15 1753 2042 555454713 555454439 1.560000e-30 145.0
41 TraesCS2A01G115400 chr5B 82.353 119 20 1 1024 1141 35193042 35193160 9.520000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G115400 chr2A 65818551 65823924 5373 True 1344.428571 5594 91.219571 1 5374 7 chr2A.!!$R1 5373
1 TraesCS2A01G115400 chr2A 24300484 24300992 508 False 542.000000 542 85.851000 1715 2235 1 chr2A.!!$F1 520
2 TraesCS2A01G115400 chr2B 101486227 101494660 8433 True 485.542857 2206 86.502429 2 4865 14 chr2B.!!$R3 4863
3 TraesCS2A01G115400 chr2B 39194262 39195089 827 True 335.000000 516 81.158500 1715 2935 2 chr2B.!!$R2 1220
4 TraesCS2A01G115400 chr2D 68920699 68925628 4929 True 550.000000 1986 85.675308 2 5374 13 chr2D.!!$R1 5372
5 TraesCS2A01G115400 chr2D 22503109 22503881 772 False 310.000000 496 83.002500 1715 2883 2 chr2D.!!$F1 1168

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 337 0.321210 TCCGAAAGAAATGCCTGCGA 60.321 50.0 0.00 0.0 0.00 5.10 F
1130 4413 0.673985 AAGGACAAGCTTTTTCGGGC 59.326 50.0 0.00 0.0 0.00 6.13 F
1359 5095 0.031585 TGTCAGTTGTACGCGCTCTT 59.968 50.0 5.73 0.0 0.00 2.85 F
1642 5564 0.103937 CGCATTCCTCTCCCTCTCAC 59.896 60.0 0.00 0.0 0.00 3.51 F
2597 6588 0.239347 CCTGCAAAGCAAGAAGGTCG 59.761 55.0 0.00 0.0 38.41 4.79 F
2809 6800 0.249398 GGTGTCTATGCCACCGTCTT 59.751 55.0 0.00 0.0 42.69 3.01 F
3713 8028 0.034896 TTCTCCTCCGAAACCAGCAC 59.965 55.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1298 5034 0.029834 AGAACGCGTACAACTGACGT 59.970 50.0 14.46 0.0 42.31 4.34 R
2574 6565 0.386478 CTTCTTGCTTTGCAGGCGAC 60.386 55.0 8.76 0.0 40.61 5.19 R
2649 6640 0.524862 CTTCTTGCTTTGCAGGCGAT 59.475 50.0 8.76 0.0 40.61 4.58 R
3427 7457 0.249573 GTTCGACTGGTTTCGGTGGA 60.250 55.0 0.00 0.0 39.58 4.02 R
3430 7460 0.872881 CACGTTCGACTGGTTTCGGT 60.873 55.0 0.00 0.0 39.58 4.69 R
4329 8690 1.178534 AACCCAGTCATGCCAAACCG 61.179 55.0 0.00 0.0 0.00 4.44 R
4814 9186 0.895530 GACTCCTTCCATCGGTCACA 59.104 55.0 0.00 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.931907 TGGGTCATCCATCCAGTAAAG 57.068 47.619 0.00 0.00 41.46 1.85
39 40 7.054124 GGTCATCCATCCAGTAAAGTAATCAA 58.946 38.462 0.00 0.00 0.00 2.57
40 41 7.721399 GGTCATCCATCCAGTAAAGTAATCAAT 59.279 37.037 0.00 0.00 0.00 2.57
42 43 9.699410 TCATCCATCCAGTAAAGTAATCAATTT 57.301 29.630 0.00 0.00 0.00 1.82
124 125 4.991056 GCGGACAGAGCAATAATCAAGATA 59.009 41.667 0.00 0.00 34.19 1.98
143 145 0.952497 ATGCGTGTGCTCCACAAGAG 60.952 55.000 13.93 4.49 46.28 2.85
188 190 6.908820 GGTTAATTAAGCCATTAACAGTACGC 59.091 38.462 15.09 4.26 45.63 4.42
279 281 2.893637 CTCTGTATGTGCACCACTACC 58.106 52.381 15.69 0.00 35.11 3.18
327 329 3.255888 GCAAAGAAGGGTCCGAAAGAAAT 59.744 43.478 0.00 0.00 0.00 2.17
328 330 4.798574 CAAAGAAGGGTCCGAAAGAAATG 58.201 43.478 0.00 0.00 0.00 2.32
329 331 2.437413 AGAAGGGTCCGAAAGAAATGC 58.563 47.619 0.00 0.00 0.00 3.56
330 332 1.472878 GAAGGGTCCGAAAGAAATGCC 59.527 52.381 0.00 0.00 0.00 4.40
331 333 0.698818 AGGGTCCGAAAGAAATGCCT 59.301 50.000 0.00 0.00 0.00 4.75
332 334 0.811281 GGGTCCGAAAGAAATGCCTG 59.189 55.000 0.00 0.00 0.00 4.85
335 337 0.321210 TCCGAAAGAAATGCCTGCGA 60.321 50.000 0.00 0.00 0.00 5.10
392 394 3.927142 ACAGAGAAAGCCGAACGAATAAG 59.073 43.478 0.00 0.00 0.00 1.73
395 397 4.082136 AGAGAAAGCCGAACGAATAAGACT 60.082 41.667 0.00 0.00 0.00 3.24
447 455 2.964740 AGGATATTGGCATCGATCGTG 58.035 47.619 15.94 13.42 0.00 4.35
449 457 3.509967 AGGATATTGGCATCGATCGTGTA 59.490 43.478 15.94 0.00 0.00 2.90
465 473 2.926200 CGTGTACAGGCAATCTTCTGAG 59.074 50.000 2.09 0.00 35.20 3.35
540 3618 3.317430 GCCTCCATATCTTTCTTTGCCTG 59.683 47.826 0.00 0.00 0.00 4.85
549 3627 1.460273 TTCTTTGCCTGCCGGGAAAC 61.460 55.000 9.77 0.00 44.45 2.78
577 3655 4.020617 CCCGAAGCTGCTGTCCCA 62.021 66.667 1.35 0.00 0.00 4.37
661 3746 1.076350 TCCAATGGTTTTGGATCGGGT 59.924 47.619 0.00 0.00 43.17 5.28
662 3747 2.309162 TCCAATGGTTTTGGATCGGGTA 59.691 45.455 0.00 0.00 43.17 3.69
691 3776 4.954933 GCCACCGGCTCTGAATTA 57.045 55.556 0.00 0.00 46.69 1.40
693 3778 0.947244 GCCACCGGCTCTGAATTATG 59.053 55.000 0.00 0.00 46.69 1.90
697 3797 0.947244 CCGGCTCTGAATTATGTGGC 59.053 55.000 0.00 0.00 0.00 5.01
757 3884 3.360956 GAAGCCCCAAATGCCTGCG 62.361 63.158 0.00 0.00 0.00 5.18
801 3938 5.392767 TCTAACTGAGCCTCTAAACACTG 57.607 43.478 0.00 0.00 0.00 3.66
888 4030 4.147321 TGGTAGTATGGGTCGAGGTTATC 58.853 47.826 0.00 0.00 0.00 1.75
890 4032 4.022503 GGTAGTATGGGTCGAGGTTATCAC 60.023 50.000 0.00 0.00 0.00 3.06
898 4043 4.307432 GGTCGAGGTTATCACATGTATGG 58.693 47.826 0.00 0.00 0.00 2.74
913 4058 6.003950 ACATGTATGGGGTGCAATAATAGTC 58.996 40.000 0.00 0.00 0.00 2.59
915 4060 5.620206 TGTATGGGGTGCAATAATAGTCTG 58.380 41.667 0.00 0.00 0.00 3.51
917 4062 2.230660 GGGGTGCAATAATAGTCTGCC 58.769 52.381 0.00 0.00 35.13 4.85
942 4087 1.421382 CAAAATTCACAAGGCGGCTG 58.579 50.000 14.21 9.65 0.00 4.85
956 4101 3.054948 AGGCGGCTGTTATTGGTACTTTA 60.055 43.478 12.25 0.00 0.00 1.85
959 4104 4.510571 CGGCTGTTATTGGTACTTTAGGT 58.489 43.478 0.00 0.00 0.00 3.08
962 4107 6.408869 GGCTGTTATTGGTACTTTAGGTGTA 58.591 40.000 0.00 0.00 0.00 2.90
1034 4317 9.905713 ACATATGTAACAAAATACTCACTCCAT 57.094 29.630 6.56 0.00 0.00 3.41
1036 4319 7.865706 ATGTAACAAAATACTCACTCCATCC 57.134 36.000 0.00 0.00 0.00 3.51
1037 4320 5.872617 TGTAACAAAATACTCACTCCATCCG 59.127 40.000 0.00 0.00 0.00 4.18
1038 4321 4.819105 ACAAAATACTCACTCCATCCGA 57.181 40.909 0.00 0.00 0.00 4.55
1039 4322 4.759782 ACAAAATACTCACTCCATCCGAG 58.240 43.478 0.00 0.00 44.95 4.63
1040 4323 4.466370 ACAAAATACTCACTCCATCCGAGA 59.534 41.667 0.00 0.00 41.63 4.04
1041 4324 5.046591 ACAAAATACTCACTCCATCCGAGAA 60.047 40.000 0.00 0.00 41.63 2.87
1042 4325 5.677319 AAATACTCACTCCATCCGAGAAA 57.323 39.130 0.00 0.00 41.63 2.52
1043 4326 5.677319 AATACTCACTCCATCCGAGAAAA 57.323 39.130 0.00 0.00 41.63 2.29
1044 4327 3.320673 ACTCACTCCATCCGAGAAAAC 57.679 47.619 0.00 0.00 41.63 2.43
1045 4328 2.900546 ACTCACTCCATCCGAGAAAACT 59.099 45.455 0.00 0.00 41.63 2.66
1046 4329 3.325135 ACTCACTCCATCCGAGAAAACTT 59.675 43.478 0.00 0.00 41.63 2.66
1047 4330 3.664107 TCACTCCATCCGAGAAAACTTG 58.336 45.455 0.00 0.00 41.63 3.16
1048 4331 3.071023 TCACTCCATCCGAGAAAACTTGT 59.929 43.478 0.00 0.00 41.63 3.16
1049 4332 3.433615 CACTCCATCCGAGAAAACTTGTC 59.566 47.826 0.00 0.00 41.63 3.18
1050 4333 3.003480 CTCCATCCGAGAAAACTTGTCC 58.997 50.000 0.00 0.00 41.63 4.02
1051 4334 2.084546 CCATCCGAGAAAACTTGTCCC 58.915 52.381 0.00 0.00 0.00 4.46
1052 4335 2.552155 CCATCCGAGAAAACTTGTCCCA 60.552 50.000 0.00 0.00 0.00 4.37
1053 4336 3.146066 CATCCGAGAAAACTTGTCCCAA 58.854 45.455 0.00 0.00 0.00 4.12
1054 4337 3.284793 TCCGAGAAAACTTGTCCCAAA 57.715 42.857 0.00 0.00 0.00 3.28
1055 4338 2.946990 TCCGAGAAAACTTGTCCCAAAC 59.053 45.455 0.00 0.00 0.00 2.93
1056 4339 2.949644 CCGAGAAAACTTGTCCCAAACT 59.050 45.455 0.00 0.00 0.00 2.66
1057 4340 3.380320 CCGAGAAAACTTGTCCCAAACTT 59.620 43.478 0.00 0.00 0.00 2.66
1058 4341 4.351192 CGAGAAAACTTGTCCCAAACTTG 58.649 43.478 0.00 0.00 0.00 3.16
1059 4342 4.142469 CGAGAAAACTTGTCCCAAACTTGT 60.142 41.667 0.00 0.00 0.00 3.16
1060 4343 5.621329 CGAGAAAACTTGTCCCAAACTTGTT 60.621 40.000 0.00 0.00 0.00 2.83
1061 4344 6.109156 AGAAAACTTGTCCCAAACTTGTTT 57.891 33.333 0.00 0.00 36.38 2.83
1062 4345 7.234661 AGAAAACTTGTCCCAAACTTGTTTA 57.765 32.000 0.00 0.00 34.98 2.01
1063 4346 7.847096 AGAAAACTTGTCCCAAACTTGTTTAT 58.153 30.769 0.00 0.00 34.98 1.40
1064 4347 7.979537 AGAAAACTTGTCCCAAACTTGTTTATC 59.020 33.333 0.00 0.00 34.98 1.75
1065 4348 6.783708 AACTTGTCCCAAACTTGTTTATCA 57.216 33.333 0.00 0.00 0.00 2.15
1066 4349 6.783708 ACTTGTCCCAAACTTGTTTATCAA 57.216 33.333 0.00 2.78 34.61 2.57
1067 4350 7.176589 ACTTGTCCCAAACTTGTTTATCAAA 57.823 32.000 0.00 0.00 35.48 2.69
1068 4351 7.791029 ACTTGTCCCAAACTTGTTTATCAAAT 58.209 30.769 0.00 0.00 35.48 2.32
1069 4352 7.926018 ACTTGTCCCAAACTTGTTTATCAAATC 59.074 33.333 0.00 0.00 35.48 2.17
1070 4353 7.353414 TGTCCCAAACTTGTTTATCAAATCA 57.647 32.000 0.00 0.00 35.48 2.57
1071 4354 7.786030 TGTCCCAAACTTGTTTATCAAATCAA 58.214 30.769 0.00 0.00 35.48 2.57
1072 4355 8.428063 TGTCCCAAACTTGTTTATCAAATCAAT 58.572 29.630 0.00 0.00 35.48 2.57
1073 4356 8.711457 GTCCCAAACTTGTTTATCAAATCAATG 58.289 33.333 0.00 0.00 35.48 2.82
1074 4357 8.428063 TCCCAAACTTGTTTATCAAATCAATGT 58.572 29.630 0.00 0.00 35.48 2.71
1075 4358 9.703892 CCCAAACTTGTTTATCAAATCAATGTA 57.296 29.630 0.00 0.00 35.48 2.29
1092 4375 8.807948 ATCAATGTATTTAGCACTAACTTGGT 57.192 30.769 0.00 0.00 0.00 3.67
1093 4376 8.039603 TCAATGTATTTAGCACTAACTTGGTG 57.960 34.615 0.97 0.97 37.70 4.17
1094 4377 7.663905 TCAATGTATTTAGCACTAACTTGGTGT 59.336 33.333 7.08 0.00 37.07 4.16
1095 4378 7.996098 ATGTATTTAGCACTAACTTGGTGTT 57.004 32.000 7.08 3.82 42.31 3.32
1096 4379 9.509956 AATGTATTTAGCACTAACTTGGTGTTA 57.490 29.630 7.08 2.89 39.89 2.41
1115 4398 6.381498 TGTTAGATACACCCATTTGAAGGA 57.619 37.500 0.00 0.00 0.00 3.36
1116 4399 6.177610 TGTTAGATACACCCATTTGAAGGAC 58.822 40.000 0.00 0.00 0.00 3.85
1117 4400 4.927267 AGATACACCCATTTGAAGGACA 57.073 40.909 0.00 0.00 0.00 4.02
1118 4401 5.255397 AGATACACCCATTTGAAGGACAA 57.745 39.130 0.00 0.00 36.65 3.18
1119 4402 5.256474 AGATACACCCATTTGAAGGACAAG 58.744 41.667 0.00 0.00 39.77 3.16
1120 4403 1.963515 ACACCCATTTGAAGGACAAGC 59.036 47.619 0.00 0.00 39.77 4.01
1121 4404 2.242043 CACCCATTTGAAGGACAAGCT 58.758 47.619 0.00 0.00 39.77 3.74
1122 4405 2.629617 CACCCATTTGAAGGACAAGCTT 59.370 45.455 0.00 0.00 39.77 3.74
1123 4406 3.070015 CACCCATTTGAAGGACAAGCTTT 59.930 43.478 0.00 0.00 39.77 3.51
1124 4407 3.711190 ACCCATTTGAAGGACAAGCTTTT 59.289 39.130 0.00 0.00 39.77 2.27
1125 4408 4.164030 ACCCATTTGAAGGACAAGCTTTTT 59.836 37.500 0.00 0.00 39.77 1.94
1126 4409 4.751600 CCCATTTGAAGGACAAGCTTTTTC 59.248 41.667 0.00 0.00 39.77 2.29
1127 4410 4.445385 CCATTTGAAGGACAAGCTTTTTCG 59.555 41.667 0.00 0.00 39.77 3.46
1128 4411 3.708563 TTGAAGGACAAGCTTTTTCGG 57.291 42.857 0.00 0.00 34.20 4.30
1129 4412 1.953686 TGAAGGACAAGCTTTTTCGGG 59.046 47.619 0.00 0.00 0.00 5.14
1130 4413 0.673985 AAGGACAAGCTTTTTCGGGC 59.326 50.000 0.00 0.00 0.00 6.13
1131 4414 1.081442 GGACAAGCTTTTTCGGGCG 60.081 57.895 0.00 0.00 0.00 6.13
1132 4415 1.081442 GACAAGCTTTTTCGGGCGG 60.081 57.895 0.00 0.00 0.00 6.13
1133 4416 1.512156 GACAAGCTTTTTCGGGCGGA 61.512 55.000 0.00 0.00 0.00 5.54
1134 4417 1.210155 CAAGCTTTTTCGGGCGGAG 59.790 57.895 0.00 0.00 0.00 4.63
1135 4418 1.072505 AAGCTTTTTCGGGCGGAGA 59.927 52.632 0.00 0.00 0.00 3.71
1136 4419 0.955919 AAGCTTTTTCGGGCGGAGAG 60.956 55.000 0.00 0.00 0.00 3.20
1137 4420 1.375523 GCTTTTTCGGGCGGAGAGA 60.376 57.895 0.00 0.00 0.00 3.10
1138 4421 1.362406 GCTTTTTCGGGCGGAGAGAG 61.362 60.000 0.00 0.00 0.00 3.20
1174 4460 8.153550 TCAAATATGGCCAAATACAAAAAGTGT 58.846 29.630 10.96 0.00 44.82 3.55
1285 5021 6.231211 ACCTAGATCTGAAATTTTGTGACGT 58.769 36.000 5.18 0.00 0.00 4.34
1288 5024 6.233430 AGATCTGAAATTTTGTGACGTCAG 57.767 37.500 20.73 2.92 35.01 3.51
1289 5025 5.760253 AGATCTGAAATTTTGTGACGTCAGT 59.240 36.000 20.73 0.00 35.20 3.41
1290 5026 6.929049 AGATCTGAAATTTTGTGACGTCAGTA 59.071 34.615 20.73 8.54 35.20 2.74
1291 5027 7.604164 AGATCTGAAATTTTGTGACGTCAGTAT 59.396 33.333 20.73 7.13 35.20 2.12
1292 5028 7.490962 TCTGAAATTTTGTGACGTCAGTATT 57.509 32.000 20.73 12.69 35.20 1.89
1293 5029 7.925993 TCTGAAATTTTGTGACGTCAGTATTT 58.074 30.769 20.73 19.54 35.20 1.40
1294 5030 8.402472 TCTGAAATTTTGTGACGTCAGTATTTT 58.598 29.630 20.73 14.65 35.20 1.82
1295 5031 8.334016 TGAAATTTTGTGACGTCAGTATTTTG 57.666 30.769 20.73 0.00 0.00 2.44
1296 5032 7.971168 TGAAATTTTGTGACGTCAGTATTTTGT 59.029 29.630 20.73 0.84 0.00 2.83
1297 5033 7.678194 AATTTTGTGACGTCAGTATTTTGTG 57.322 32.000 20.73 0.00 0.00 3.33
1298 5034 6.424176 TTTTGTGACGTCAGTATTTTGTGA 57.576 33.333 20.73 0.00 0.00 3.58
1299 5035 5.398176 TTGTGACGTCAGTATTTTGTGAC 57.602 39.130 20.73 2.79 39.83 3.67
1327 5063 3.904571 TGTACGCGTTCTTTCTATGTGT 58.095 40.909 20.78 0.00 0.00 3.72
1328 5064 3.671459 TGTACGCGTTCTTTCTATGTGTG 59.329 43.478 20.78 0.00 0.00 3.82
1329 5065 3.021269 ACGCGTTCTTTCTATGTGTGA 57.979 42.857 5.58 0.00 0.00 3.58
1330 5066 3.386486 ACGCGTTCTTTCTATGTGTGAA 58.614 40.909 5.58 0.00 0.00 3.18
1331 5067 3.805422 ACGCGTTCTTTCTATGTGTGAAA 59.195 39.130 5.58 0.00 33.15 2.69
1332 5068 4.451096 ACGCGTTCTTTCTATGTGTGAAAT 59.549 37.500 5.58 0.00 33.65 2.17
1333 5069 5.049680 ACGCGTTCTTTCTATGTGTGAAATT 60.050 36.000 5.58 0.00 33.65 1.82
1334 5070 5.851177 CGCGTTCTTTCTATGTGTGAAATTT 59.149 36.000 0.00 0.00 33.65 1.82
1335 5071 6.031417 CGCGTTCTTTCTATGTGTGAAATTTC 59.969 38.462 11.41 11.41 33.65 2.17
1336 5072 6.031417 GCGTTCTTTCTATGTGTGAAATTTCG 59.969 38.462 13.34 0.00 33.65 3.46
1337 5073 7.069569 CGTTCTTTCTATGTGTGAAATTTCGT 58.930 34.615 13.34 0.40 33.65 3.85
1338 5074 7.058354 CGTTCTTTCTATGTGTGAAATTTCGTG 59.942 37.037 13.34 0.00 33.65 4.35
1339 5075 7.722795 TCTTTCTATGTGTGAAATTTCGTGA 57.277 32.000 13.34 0.00 33.65 4.35
1340 5076 8.322906 TCTTTCTATGTGTGAAATTTCGTGAT 57.677 30.769 13.34 5.59 33.65 3.06
1341 5077 8.229811 TCTTTCTATGTGTGAAATTTCGTGATG 58.770 33.333 13.34 1.38 33.65 3.07
1342 5078 7.433708 TTCTATGTGTGAAATTTCGTGATGT 57.566 32.000 13.34 1.22 0.00 3.06
1343 5079 7.060600 TCTATGTGTGAAATTTCGTGATGTC 57.939 36.000 13.34 1.23 0.00 3.06
1344 5080 5.687770 ATGTGTGAAATTTCGTGATGTCA 57.312 34.783 13.34 6.20 0.00 3.58
1345 5081 5.094429 TGTGTGAAATTTCGTGATGTCAG 57.906 39.130 13.34 0.00 0.00 3.51
1346 5082 4.574421 TGTGTGAAATTTCGTGATGTCAGT 59.426 37.500 13.34 0.00 0.00 3.41
1347 5083 5.065859 TGTGTGAAATTTCGTGATGTCAGTT 59.934 36.000 13.34 0.00 0.00 3.16
1348 5084 5.396362 GTGTGAAATTTCGTGATGTCAGTTG 59.604 40.000 13.34 0.00 0.00 3.16
1349 5085 5.065859 TGTGAAATTTCGTGATGTCAGTTGT 59.934 36.000 13.34 0.00 0.00 3.32
1350 5086 6.258947 TGTGAAATTTCGTGATGTCAGTTGTA 59.741 34.615 13.34 0.00 0.00 2.41
1351 5087 6.573725 GTGAAATTTCGTGATGTCAGTTGTAC 59.426 38.462 13.34 0.00 0.00 2.90
1352 5088 4.903638 ATTTCGTGATGTCAGTTGTACG 57.096 40.909 0.00 0.00 0.00 3.67
1353 5089 1.693467 TCGTGATGTCAGTTGTACGC 58.307 50.000 0.00 0.00 0.00 4.42
1354 5090 0.362179 CGTGATGTCAGTTGTACGCG 59.638 55.000 3.53 3.53 0.00 6.01
1355 5091 0.093026 GTGATGTCAGTTGTACGCGC 59.907 55.000 5.73 0.00 0.00 6.86
1356 5092 0.038618 TGATGTCAGTTGTACGCGCT 60.039 50.000 5.73 0.00 0.00 5.92
1357 5093 0.640768 GATGTCAGTTGTACGCGCTC 59.359 55.000 5.73 0.00 0.00 5.03
1358 5094 0.243907 ATGTCAGTTGTACGCGCTCT 59.756 50.000 5.73 0.00 0.00 4.09
1359 5095 0.031585 TGTCAGTTGTACGCGCTCTT 59.968 50.000 5.73 0.00 0.00 2.85
1360 5096 1.137513 GTCAGTTGTACGCGCTCTTT 58.862 50.000 5.73 0.00 0.00 2.52
1361 5097 1.124477 GTCAGTTGTACGCGCTCTTTC 59.876 52.381 5.73 0.00 0.00 2.62
1362 5098 1.000607 TCAGTTGTACGCGCTCTTTCT 60.001 47.619 5.73 0.00 0.00 2.52
1363 5099 2.227149 TCAGTTGTACGCGCTCTTTCTA 59.773 45.455 5.73 0.00 0.00 2.10
1364 5100 3.119602 TCAGTTGTACGCGCTCTTTCTAT 60.120 43.478 5.73 0.00 0.00 1.98
1365 5101 3.000674 CAGTTGTACGCGCTCTTTCTATG 60.001 47.826 5.73 0.00 0.00 2.23
1366 5102 2.921754 GTTGTACGCGCTCTTTCTATGT 59.078 45.455 5.73 0.00 0.00 2.29
1367 5103 2.526077 TGTACGCGCTCTTTCTATGTG 58.474 47.619 5.73 0.00 0.00 3.21
1368 5104 2.094906 TGTACGCGCTCTTTCTATGTGT 60.095 45.455 5.73 0.00 0.00 3.72
1373 5109 3.190079 GCGCTCTTTCTATGTGTCATGA 58.810 45.455 0.00 0.00 0.00 3.07
1391 5127 8.302438 GTGTCATGATTTTCTTTCCAGATTCTT 58.698 33.333 0.00 0.00 0.00 2.52
1392 5128 8.301720 TGTCATGATTTTCTTTCCAGATTCTTG 58.698 33.333 0.00 0.00 0.00 3.02
1409 5145 5.490139 TTCTTGACAACTTTCAGCTTCAG 57.510 39.130 0.00 0.00 0.00 3.02
1411 5147 2.575532 TGACAACTTTCAGCTTCAGGG 58.424 47.619 0.00 0.00 0.00 4.45
1429 5165 8.520351 GCTTCAGGGTTTGTTTTACTATAATGT 58.480 33.333 0.00 0.00 0.00 2.71
1492 5229 1.679311 TGGGCTAACTGCTCACCAG 59.321 57.895 0.00 0.00 46.78 4.00
1526 5267 4.641396 AGAATCAAACAGGTGTCGATGAA 58.359 39.130 0.00 0.00 0.00 2.57
1531 5272 3.685139 AACAGGTGTCGATGAAGATGT 57.315 42.857 0.00 0.00 0.00 3.06
1536 5277 1.207089 GTGTCGATGAAGATGTCCCCA 59.793 52.381 0.00 0.00 0.00 4.96
1538 5459 2.304470 TGTCGATGAAGATGTCCCCAAA 59.696 45.455 0.00 0.00 0.00 3.28
1547 5468 5.602145 TGAAGATGTCCCCAAACTGAATTTT 59.398 36.000 0.00 0.00 0.00 1.82
1549 5470 4.528206 AGATGTCCCCAAACTGAATTTTCC 59.472 41.667 0.00 0.00 0.00 3.13
1551 5472 3.239449 GTCCCCAAACTGAATTTTCCCT 58.761 45.455 0.00 0.00 0.00 4.20
1553 5474 2.231235 CCCCAAACTGAATTTTCCCTCG 59.769 50.000 0.00 0.00 0.00 4.63
1563 5485 3.660501 ATTTTCCCTCGGTTTTGCTTC 57.339 42.857 0.00 0.00 0.00 3.86
1569 5491 1.269569 CCTCGGTTTTGCTTCCAAACC 60.270 52.381 4.73 4.73 40.45 3.27
1586 5508 2.818751 ACCGGAATCTTATTTGCCCA 57.181 45.000 9.46 0.00 0.00 5.36
1587 5509 2.654863 ACCGGAATCTTATTTGCCCAG 58.345 47.619 9.46 0.00 0.00 4.45
1615 5537 1.133790 GCCCCTACGCCTATACATACG 59.866 57.143 0.00 0.00 0.00 3.06
1642 5564 0.103937 CGCATTCCTCTCCCTCTCAC 59.896 60.000 0.00 0.00 0.00 3.51
1667 5589 0.391130 AACCACCATCACGATCACCG 60.391 55.000 0.00 0.00 45.44 4.94
1761 5683 1.194781 TCCTGTCAGCCAAGGACCTC 61.195 60.000 0.00 0.00 34.36 3.85
2337 6265 3.058160 CCTCCACCTGCAAAGCCG 61.058 66.667 0.00 0.00 0.00 5.52
2388 6316 2.044352 AAAGCACCCGGGCATACC 60.044 61.111 24.08 4.15 35.83 2.73
2528 6519 0.390735 GCAAAGCAAGAAGGGCATGG 60.391 55.000 0.00 0.00 0.00 3.66
2595 6586 1.799258 CGCCTGCAAAGCAAGAAGGT 61.799 55.000 8.92 0.00 38.41 3.50
2597 6588 0.239347 CCTGCAAAGCAAGAAGGTCG 59.761 55.000 0.00 0.00 38.41 4.79
2670 6661 1.291272 GCCTGCAAAGCAAGAAGGG 59.709 57.895 3.57 0.00 38.41 3.95
2706 6697 3.249189 TCTCCAAAGCCAGCCGGT 61.249 61.111 1.90 0.00 33.28 5.28
2809 6800 0.249398 GGTGTCTATGCCACCGTCTT 59.751 55.000 0.00 0.00 42.69 3.01
2892 6883 3.700970 TCCATGCCGCCGTCTCAA 61.701 61.111 0.00 0.00 0.00 3.02
2940 6970 2.341176 CCGTCTCCGAAACCGGTT 59.659 61.111 15.86 15.86 46.77 4.44
2997 7027 2.282180 GGGCATGTGGTGTCCGTT 60.282 61.111 0.00 0.00 43.97 4.44
3021 7051 1.448922 CGGCTCCAAAACCGGTTGAA 61.449 55.000 23.08 5.82 45.74 2.69
3442 7472 1.671379 GCCTCCACCGAAACCAGTC 60.671 63.158 0.00 0.00 0.00 3.51
3502 7814 1.549203 GAAATGTGGTGTCCATGCCT 58.451 50.000 0.00 0.00 35.28 4.75
3529 7841 1.370051 GCCGAAACCAGTTGAACGC 60.370 57.895 0.00 0.00 0.00 4.84
3617 7929 3.190849 CCGAGCAGCATGTGTCCG 61.191 66.667 0.00 0.61 39.31 4.79
3712 8027 0.321671 CTTCTCCTCCGAAACCAGCA 59.678 55.000 0.00 0.00 0.00 4.41
3713 8028 0.034896 TTCTCCTCCGAAACCAGCAC 59.965 55.000 0.00 0.00 0.00 4.40
3841 8156 2.672651 CCTGTTCATGCGGTGCCA 60.673 61.111 0.00 0.00 0.00 4.92
4010 8364 1.683365 ATGCCGCCTGCTCCAAAAT 60.683 52.632 0.00 0.00 42.00 1.82
4015 8369 1.138247 GCCTGCTCCAAAATCAGCG 59.862 57.895 0.00 0.00 38.59 5.18
4256 8610 7.254455 GCAGAGATGTTTACACGCACTAATAAT 60.254 37.037 0.00 0.00 0.00 1.28
4257 8611 9.244799 CAGAGATGTTTACACGCACTAATAATA 57.755 33.333 0.00 0.00 0.00 0.98
4259 8613 9.845305 GAGATGTTTACACGCACTAATAATAAC 57.155 33.333 0.00 0.00 0.00 1.89
4260 8614 8.823818 AGATGTTTACACGCACTAATAATAACC 58.176 33.333 0.00 0.00 0.00 2.85
4261 8615 8.726870 ATGTTTACACGCACTAATAATAACCT 57.273 30.769 0.00 0.00 0.00 3.50
4328 8689 4.499758 GCACGATGTACTAGTAAAGAGTGC 59.500 45.833 26.34 26.34 43.06 4.40
4329 8690 5.035443 CACGATGTACTAGTAAAGAGTGCC 58.965 45.833 14.16 0.00 0.00 5.01
4386 8747 7.502696 TGCTATAAATTAAGACATGGGTACGT 58.497 34.615 0.00 0.00 0.00 3.57
4474 8836 5.180492 TGGAAGAGTAAACTGCATAAAACCG 59.820 40.000 0.00 0.00 0.00 4.44
4484 8846 2.223688 TGCATAAAACCGCCATATGTGC 60.224 45.455 1.24 4.17 31.25 4.57
4494 8858 3.228749 CGCCATATGTGCAAATCGATTC 58.771 45.455 11.83 0.07 0.00 2.52
4539 8903 7.203910 CAGTGGATCTTAGTACTGAACATACC 58.796 42.308 5.39 1.47 42.28 2.73
4575 8947 7.698130 GGTTAAATGATGTTTGTGAGCATACTC 59.302 37.037 0.00 0.00 43.76 2.59
4609 8981 7.504924 TGTAGTAGTTTTATGCAGTTTGCTT 57.495 32.000 2.48 0.00 45.31 3.91
4814 9186 0.033504 GGTGACGATGTGACAGTGGT 59.966 55.000 0.00 0.00 0.00 4.16
4866 9238 0.104882 TCAAGGTGTGGGGTGGTCTA 60.105 55.000 0.00 0.00 0.00 2.59
4868 9240 0.104620 AAGGTGTGGGGTGGTCTACT 60.105 55.000 0.00 0.00 0.00 2.57
4875 9247 0.175073 GGGGTGGTCTACTAACGCTG 59.825 60.000 0.00 0.00 0.00 5.18
4886 9258 1.618837 ACTAACGCTGGAGAAGAGCAA 59.381 47.619 0.00 0.00 36.12 3.91
4889 9261 1.449246 CGCTGGAGAAGAGCAAGGG 60.449 63.158 0.00 0.00 36.12 3.95
4893 9265 1.208293 CTGGAGAAGAGCAAGGGGTAC 59.792 57.143 0.00 0.00 0.00 3.34
4903 9275 2.375345 AAGGGGTACAGGGATGCCG 61.375 63.158 0.00 0.00 0.00 5.69
4906 9278 3.087906 GGTACAGGGATGCCGGGT 61.088 66.667 8.49 8.51 0.00 5.28
4916 9288 2.854300 GATGCCGGGTGGGGAAACAT 62.854 60.000 2.18 0.00 40.78 2.71
4980 9352 4.962836 GTGGTGGCAGCAGGCTGT 62.963 66.667 21.25 0.00 45.24 4.40
4985 9357 4.385405 GGCAGCAGGCTGTCGACT 62.385 66.667 21.19 1.00 45.24 4.18
5297 9669 0.476771 AAATCCAACAGGTGACGGGT 59.523 50.000 0.00 0.00 0.00 5.28
5298 9670 0.036306 AATCCAACAGGTGACGGGTC 59.964 55.000 0.00 0.00 0.00 4.46
5302 9674 1.156803 AACAGGTGACGGGTCCCTA 59.843 57.895 6.29 0.00 31.81 3.53
5335 9707 7.830201 AGTAGGTCCCATAGATTAATCTCTACG 59.170 40.741 21.17 8.40 38.32 3.51
5338 9710 7.896496 AGGTCCCATAGATTAATCTCTACGATT 59.104 37.037 21.17 0.00 44.35 3.34
5341 9713 8.961634 TCCCATAGATTAATCTCTACGATTCTG 58.038 37.037 21.17 6.59 41.36 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.840181 AGGCCTGTAAAAACCTTAGGTTAAAA 59.160 34.615 17.80 2.70 46.20 1.52
43 44 6.375418 AGGCCTGTAAAAACCTTAGGTTAAA 58.625 36.000 17.80 3.07 46.20 1.52
44 45 5.955944 AGGCCTGTAAAAACCTTAGGTTAA 58.044 37.500 17.80 3.44 46.20 2.01
45 46 5.587760 AGGCCTGTAAAAACCTTAGGTTA 57.412 39.130 17.80 0.00 46.20 2.85
48 49 5.431179 TCTAGGCCTGTAAAAACCTTAGG 57.569 43.478 17.99 0.00 33.60 2.69
49 50 7.754851 TTTTCTAGGCCTGTAAAAACCTTAG 57.245 36.000 17.99 0.00 33.60 2.18
50 51 7.781219 AGTTTTTCTAGGCCTGTAAAAACCTTA 59.219 33.333 36.54 19.87 45.93 2.69
51 52 6.610020 AGTTTTTCTAGGCCTGTAAAAACCTT 59.390 34.615 36.54 27.38 45.93 3.50
52 53 6.134055 AGTTTTTCTAGGCCTGTAAAAACCT 58.866 36.000 36.54 28.52 45.93 3.50
53 54 6.401047 AGTTTTTCTAGGCCTGTAAAAACC 57.599 37.500 36.54 27.56 45.93 3.27
84 85 1.080772 GCCTTGCTTGTTAACCGCC 60.081 57.895 12.65 0.00 0.00 6.13
143 145 3.723348 GTCGCTTGACGGGTTGGC 61.723 66.667 0.00 0.00 43.89 4.52
188 190 3.374988 TCTTGACACTGTGCTTTCTTGTG 59.625 43.478 7.90 0.00 35.09 3.33
265 267 0.605319 CGTTGGGTAGTGGTGCACAT 60.605 55.000 20.43 6.43 36.74 3.21
267 269 1.964373 CCGTTGGGTAGTGGTGCAC 60.964 63.158 8.80 8.80 34.10 4.57
327 329 2.352715 CGGATATGTTCTATCGCAGGCA 60.353 50.000 0.00 0.00 0.00 4.75
328 330 2.094700 TCGGATATGTTCTATCGCAGGC 60.095 50.000 0.00 0.00 0.00 4.85
329 331 3.440522 TCTCGGATATGTTCTATCGCAGG 59.559 47.826 0.00 0.00 0.00 4.85
330 332 4.393371 TCTCTCGGATATGTTCTATCGCAG 59.607 45.833 0.00 0.00 0.00 5.18
331 333 4.324267 TCTCTCGGATATGTTCTATCGCA 58.676 43.478 0.00 0.00 0.00 5.10
332 334 4.948608 TCTCTCGGATATGTTCTATCGC 57.051 45.455 0.00 0.00 0.00 4.58
335 337 6.827586 GAGGTTCTCTCGGATATGTTCTAT 57.172 41.667 0.00 0.00 32.18 1.98
392 394 2.335712 CCGGCTTTTCCCTGCAGTC 61.336 63.158 13.81 0.00 0.00 3.51
395 397 1.603455 CTTCCGGCTTTTCCCTGCA 60.603 57.895 0.00 0.00 0.00 4.41
447 455 3.182967 CGTCTCAGAAGATTGCCTGTAC 58.817 50.000 0.00 0.00 33.08 2.90
449 457 1.620819 ACGTCTCAGAAGATTGCCTGT 59.379 47.619 0.00 0.00 33.08 4.00
540 3618 1.029681 GTAATCCATGGTTTCCCGGC 58.970 55.000 12.58 0.00 0.00 6.13
549 3627 0.474184 AGCTTCGGGGTAATCCATGG 59.526 55.000 4.97 4.97 37.22 3.66
559 3637 4.785453 GGGACAGCAGCTTCGGGG 62.785 72.222 0.00 0.00 0.00 5.73
577 3655 0.040058 TCCCTGATTGGCAAGCACAT 59.960 50.000 15.11 0.00 0.00 3.21
649 3734 6.320164 CACCTTGATATTTACCCGATCCAAAA 59.680 38.462 0.00 0.00 0.00 2.44
650 3735 5.825679 CACCTTGATATTTACCCGATCCAAA 59.174 40.000 0.00 0.00 0.00 3.28
661 3746 2.925724 CCGGTGGCACCTTGATATTTA 58.074 47.619 32.28 0.00 35.66 1.40
662 3747 1.762708 CCGGTGGCACCTTGATATTT 58.237 50.000 32.28 0.00 35.66 1.40
691 3776 1.648116 AAAATTCCCAGCAGCCACAT 58.352 45.000 0.00 0.00 0.00 3.21
693 3778 1.620323 AGAAAAATTCCCAGCAGCCAC 59.380 47.619 0.00 0.00 0.00 5.01
697 3797 3.575687 AGTTGGAGAAAAATTCCCAGCAG 59.424 43.478 12.94 0.00 35.36 4.24
757 3884 5.412904 AGAAGGGACAAAAACGAAGATGATC 59.587 40.000 0.00 0.00 0.00 2.92
801 3938 9.760660 CAGATGCAAAGTCTAAAGTTGTAATAC 57.239 33.333 0.00 0.00 0.00 1.89
888 4030 5.769662 ACTATTATTGCACCCCATACATGTG 59.230 40.000 9.11 0.00 0.00 3.21
890 4032 6.149973 CAGACTATTATTGCACCCCATACATG 59.850 42.308 0.00 0.00 0.00 3.21
898 4043 2.930950 TGGCAGACTATTATTGCACCC 58.069 47.619 0.00 0.00 39.54 4.61
913 4058 3.731652 TGTGAATTTTGGACTTGGCAG 57.268 42.857 0.00 0.00 0.00 4.85
915 4060 3.392882 CCTTGTGAATTTTGGACTTGGC 58.607 45.455 0.00 0.00 0.00 4.52
917 4062 3.052036 CGCCTTGTGAATTTTGGACTTG 58.948 45.455 0.00 0.00 0.00 3.16
956 4101 7.156673 TGCGAAAAGACTTATAAAGTACACCT 58.843 34.615 0.00 0.00 43.03 4.00
1016 4299 5.046591 TCTCGGATGGAGTGAGTATTTTGTT 60.047 40.000 0.00 0.00 43.60 2.83
1023 4306 4.087182 AGTTTTCTCGGATGGAGTGAGTA 58.913 43.478 0.00 0.00 43.60 2.59
1024 4307 2.900546 AGTTTTCTCGGATGGAGTGAGT 59.099 45.455 0.00 0.00 43.60 3.41
1025 4308 3.601443 AGTTTTCTCGGATGGAGTGAG 57.399 47.619 0.00 0.00 43.60 3.51
1026 4309 3.071023 ACAAGTTTTCTCGGATGGAGTGA 59.929 43.478 0.00 0.00 43.60 3.41
1027 4310 3.403038 ACAAGTTTTCTCGGATGGAGTG 58.597 45.455 0.00 0.00 43.60 3.51
1028 4311 3.557264 GGACAAGTTTTCTCGGATGGAGT 60.557 47.826 0.00 0.00 43.60 3.85
1029 4312 3.003480 GGACAAGTTTTCTCGGATGGAG 58.997 50.000 0.00 0.00 44.58 3.86
1030 4313 2.290071 GGGACAAGTTTTCTCGGATGGA 60.290 50.000 0.00 0.00 0.00 3.41
1031 4314 2.084546 GGGACAAGTTTTCTCGGATGG 58.915 52.381 0.00 0.00 0.00 3.51
1032 4315 2.778299 TGGGACAAGTTTTCTCGGATG 58.222 47.619 0.00 0.00 31.92 3.51
1040 4323 8.097662 TTGATAAACAAGTTTGGGACAAGTTTT 58.902 29.630 8.37 0.00 38.04 2.43
1041 4324 7.616313 TTGATAAACAAGTTTGGGACAAGTTT 58.384 30.769 8.37 0.00 39.34 2.66
1042 4325 7.176589 TTGATAAACAAGTTTGGGACAAGTT 57.823 32.000 8.37 0.00 37.48 2.66
1043 4326 6.783708 TTGATAAACAAGTTTGGGACAAGT 57.216 33.333 8.37 0.00 37.48 3.16
1044 4327 7.925483 TGATTTGATAAACAAGTTTGGGACAAG 59.075 33.333 8.37 0.00 41.27 3.16
1045 4328 7.786030 TGATTTGATAAACAAGTTTGGGACAA 58.214 30.769 8.37 6.53 41.27 3.18
1046 4329 7.353414 TGATTTGATAAACAAGTTTGGGACA 57.647 32.000 8.37 1.45 39.77 4.02
1047 4330 8.711457 CATTGATTTGATAAACAAGTTTGGGAC 58.289 33.333 8.37 0.00 39.77 4.46
1048 4331 8.428063 ACATTGATTTGATAAACAAGTTTGGGA 58.572 29.630 8.37 0.00 39.77 4.37
1049 4332 8.606040 ACATTGATTTGATAAACAAGTTTGGG 57.394 30.769 8.37 0.00 39.77 4.12
1066 4349 9.243105 ACCAAGTTAGTGCTAAATACATTGATT 57.757 29.630 0.00 0.00 0.00 2.57
1067 4350 8.677300 CACCAAGTTAGTGCTAAATACATTGAT 58.323 33.333 0.00 0.00 0.00 2.57
1068 4351 7.663905 ACACCAAGTTAGTGCTAAATACATTGA 59.336 33.333 0.99 0.00 38.87 2.57
1069 4352 7.816640 ACACCAAGTTAGTGCTAAATACATTG 58.183 34.615 0.99 0.00 38.87 2.82
1070 4353 7.996098 ACACCAAGTTAGTGCTAAATACATT 57.004 32.000 0.99 0.00 38.87 2.71
1071 4354 7.996098 AACACCAAGTTAGTGCTAAATACAT 57.004 32.000 0.99 0.00 39.09 2.29
1092 4375 6.177610 GTCCTTCAAATGGGTGTATCTAACA 58.822 40.000 0.00 0.00 35.06 2.41
1093 4376 6.177610 TGTCCTTCAAATGGGTGTATCTAAC 58.822 40.000 0.00 0.00 0.00 2.34
1094 4377 6.381498 TGTCCTTCAAATGGGTGTATCTAA 57.619 37.500 0.00 0.00 0.00 2.10
1095 4378 6.381498 TTGTCCTTCAAATGGGTGTATCTA 57.619 37.500 0.00 0.00 32.64 1.98
1096 4379 4.927267 TGTCCTTCAAATGGGTGTATCT 57.073 40.909 0.00 0.00 0.00 1.98
1097 4380 4.142381 GCTTGTCCTTCAAATGGGTGTATC 60.142 45.833 0.00 0.00 35.48 2.24
1098 4381 3.763897 GCTTGTCCTTCAAATGGGTGTAT 59.236 43.478 0.00 0.00 35.48 2.29
1099 4382 3.153919 GCTTGTCCTTCAAATGGGTGTA 58.846 45.455 0.00 0.00 35.48 2.90
1100 4383 1.963515 GCTTGTCCTTCAAATGGGTGT 59.036 47.619 0.00 0.00 35.48 4.16
1101 4384 2.242043 AGCTTGTCCTTCAAATGGGTG 58.758 47.619 0.00 0.00 35.48 4.61
1102 4385 2.683211 AGCTTGTCCTTCAAATGGGT 57.317 45.000 0.00 0.00 35.48 4.51
1103 4386 4.341366 AAAAGCTTGTCCTTCAAATGGG 57.659 40.909 0.00 0.00 35.48 4.00
1104 4387 4.445385 CGAAAAAGCTTGTCCTTCAAATGG 59.555 41.667 0.00 0.00 35.48 3.16
1105 4388 4.445385 CCGAAAAAGCTTGTCCTTCAAATG 59.555 41.667 0.00 0.00 35.48 2.32
1106 4389 4.501400 CCCGAAAAAGCTTGTCCTTCAAAT 60.501 41.667 0.00 0.00 35.48 2.32
1107 4390 3.181480 CCCGAAAAAGCTTGTCCTTCAAA 60.181 43.478 0.00 0.00 35.48 2.69
1108 4391 2.360801 CCCGAAAAAGCTTGTCCTTCAA 59.639 45.455 0.00 0.00 34.61 2.69
1109 4392 1.953686 CCCGAAAAAGCTTGTCCTTCA 59.046 47.619 0.00 0.00 0.00 3.02
1110 4393 1.335964 GCCCGAAAAAGCTTGTCCTTC 60.336 52.381 0.00 0.32 0.00 3.46
1111 4394 0.673985 GCCCGAAAAAGCTTGTCCTT 59.326 50.000 0.00 0.00 0.00 3.36
1112 4395 1.515521 CGCCCGAAAAAGCTTGTCCT 61.516 55.000 0.00 0.00 0.00 3.85
1113 4396 1.081442 CGCCCGAAAAAGCTTGTCC 60.081 57.895 0.00 0.00 0.00 4.02
1114 4397 1.081442 CCGCCCGAAAAAGCTTGTC 60.081 57.895 0.00 0.00 0.00 3.18
1115 4398 1.515521 CTCCGCCCGAAAAAGCTTGT 61.516 55.000 0.00 0.00 0.00 3.16
1116 4399 1.210155 CTCCGCCCGAAAAAGCTTG 59.790 57.895 0.00 0.00 0.00 4.01
1117 4400 0.955919 CTCTCCGCCCGAAAAAGCTT 60.956 55.000 0.00 0.00 0.00 3.74
1118 4401 1.376037 CTCTCCGCCCGAAAAAGCT 60.376 57.895 0.00 0.00 0.00 3.74
1119 4402 1.362406 CTCTCTCCGCCCGAAAAAGC 61.362 60.000 0.00 0.00 0.00 3.51
1120 4403 0.037232 ACTCTCTCCGCCCGAAAAAG 60.037 55.000 0.00 0.00 0.00 2.27
1121 4404 1.259609 TACTCTCTCCGCCCGAAAAA 58.740 50.000 0.00 0.00 0.00 1.94
1122 4405 1.407979 GATACTCTCTCCGCCCGAAAA 59.592 52.381 0.00 0.00 0.00 2.29
1123 4406 1.030457 GATACTCTCTCCGCCCGAAA 58.970 55.000 0.00 0.00 0.00 3.46
1124 4407 0.106868 TGATACTCTCTCCGCCCGAA 60.107 55.000 0.00 0.00 0.00 4.30
1125 4408 0.106868 TTGATACTCTCTCCGCCCGA 60.107 55.000 0.00 0.00 0.00 5.14
1126 4409 0.744874 TTTGATACTCTCTCCGCCCG 59.255 55.000 0.00 0.00 0.00 6.13
1127 4410 3.477210 AATTTGATACTCTCTCCGCCC 57.523 47.619 0.00 0.00 0.00 6.13
1128 4411 4.442706 TGAAATTTGATACTCTCTCCGCC 58.557 43.478 0.00 0.00 0.00 6.13
1129 4412 6.422776 TTTGAAATTTGATACTCTCTCCGC 57.577 37.500 0.00 0.00 0.00 5.54
1132 4415 9.890352 GCCATATTTGAAATTTGATACTCTCTC 57.110 33.333 9.46 0.00 0.00 3.20
1133 4416 8.854117 GGCCATATTTGAAATTTGATACTCTCT 58.146 33.333 9.46 0.00 0.00 3.10
1134 4417 8.632679 TGGCCATATTTGAAATTTGATACTCTC 58.367 33.333 0.00 0.00 0.00 3.20
1135 4418 8.537728 TGGCCATATTTGAAATTTGATACTCT 57.462 30.769 0.00 0.00 0.00 3.24
1136 4419 9.598517 TTTGGCCATATTTGAAATTTGATACTC 57.401 29.630 6.09 0.00 0.00 2.59
1285 5021 5.113383 ACAACTGACGTCACAAAATACTGA 58.887 37.500 15.76 0.00 0.00 3.41
1288 5024 5.360296 CGTACAACTGACGTCACAAAATAC 58.640 41.667 15.76 12.13 35.58 1.89
1289 5025 4.084952 GCGTACAACTGACGTCACAAAATA 60.085 41.667 15.76 0.98 42.31 1.40
1290 5026 3.302870 GCGTACAACTGACGTCACAAAAT 60.303 43.478 15.76 1.99 42.31 1.82
1291 5027 2.029486 GCGTACAACTGACGTCACAAAA 59.971 45.455 15.76 0.00 42.31 2.44
1292 5028 1.589320 GCGTACAACTGACGTCACAAA 59.411 47.619 15.76 0.00 42.31 2.83
1293 5029 1.202203 GCGTACAACTGACGTCACAA 58.798 50.000 15.76 0.00 42.31 3.33
1294 5030 0.931202 CGCGTACAACTGACGTCACA 60.931 55.000 15.76 0.00 42.31 3.58
1295 5031 0.931662 ACGCGTACAACTGACGTCAC 60.932 55.000 15.76 2.53 42.31 3.67
1296 5032 0.248580 AACGCGTACAACTGACGTCA 60.249 50.000 18.88 18.88 42.31 4.35
1297 5033 0.428618 GAACGCGTACAACTGACGTC 59.571 55.000 14.46 9.11 42.31 4.34
1298 5034 0.029834 AGAACGCGTACAACTGACGT 59.970 50.000 14.46 0.00 42.31 4.34
1299 5035 1.126079 AAGAACGCGTACAACTGACG 58.874 50.000 14.46 0.00 43.19 4.35
1300 5036 2.793232 AGAAAGAACGCGTACAACTGAC 59.207 45.455 14.46 7.93 0.00 3.51
1301 5037 3.088194 AGAAAGAACGCGTACAACTGA 57.912 42.857 14.46 0.00 0.00 3.41
1302 5038 4.384846 ACATAGAAAGAACGCGTACAACTG 59.615 41.667 14.46 5.81 0.00 3.16
1303 5039 4.384846 CACATAGAAAGAACGCGTACAACT 59.615 41.667 14.46 11.38 0.00 3.16
1327 5063 5.749596 ACAACTGACATCACGAAATTTCA 57.250 34.783 17.99 0.00 0.00 2.69
1328 5064 5.783654 CGTACAACTGACATCACGAAATTTC 59.216 40.000 8.20 8.20 0.00 2.17
1329 5065 5.675970 CGTACAACTGACATCACGAAATTT 58.324 37.500 0.00 0.00 0.00 1.82
1330 5066 4.377022 GCGTACAACTGACATCACGAAATT 60.377 41.667 0.00 0.00 0.00 1.82
1331 5067 3.122948 GCGTACAACTGACATCACGAAAT 59.877 43.478 0.00 0.00 0.00 2.17
1332 5068 2.473609 GCGTACAACTGACATCACGAAA 59.526 45.455 0.00 0.00 0.00 3.46
1333 5069 2.055838 GCGTACAACTGACATCACGAA 58.944 47.619 0.00 0.00 0.00 3.85
1334 5070 1.693467 GCGTACAACTGACATCACGA 58.307 50.000 0.00 0.00 0.00 4.35
1335 5071 0.362179 CGCGTACAACTGACATCACG 59.638 55.000 0.00 0.00 0.00 4.35
1336 5072 0.093026 GCGCGTACAACTGACATCAC 59.907 55.000 8.43 0.00 0.00 3.06
1337 5073 0.038618 AGCGCGTACAACTGACATCA 60.039 50.000 8.43 0.00 0.00 3.07
1338 5074 0.640768 GAGCGCGTACAACTGACATC 59.359 55.000 8.43 0.00 0.00 3.06
1339 5075 0.243907 AGAGCGCGTACAACTGACAT 59.756 50.000 8.43 0.00 0.00 3.06
1340 5076 0.031585 AAGAGCGCGTACAACTGACA 59.968 50.000 8.43 0.00 0.00 3.58
1341 5077 1.124477 GAAAGAGCGCGTACAACTGAC 59.876 52.381 8.43 0.00 0.00 3.51
1342 5078 1.000607 AGAAAGAGCGCGTACAACTGA 60.001 47.619 8.43 0.00 0.00 3.41
1343 5079 1.419374 AGAAAGAGCGCGTACAACTG 58.581 50.000 8.43 0.00 0.00 3.16
1344 5080 3.179830 CATAGAAAGAGCGCGTACAACT 58.820 45.455 8.43 0.00 0.00 3.16
1345 5081 2.921754 ACATAGAAAGAGCGCGTACAAC 59.078 45.455 8.43 0.00 0.00 3.32
1346 5082 2.921121 CACATAGAAAGAGCGCGTACAA 59.079 45.455 8.43 0.00 0.00 2.41
1347 5083 2.094906 ACACATAGAAAGAGCGCGTACA 60.095 45.455 8.43 0.00 0.00 2.90
1348 5084 2.527100 ACACATAGAAAGAGCGCGTAC 58.473 47.619 8.43 1.75 0.00 3.67
1349 5085 2.162809 TGACACATAGAAAGAGCGCGTA 59.837 45.455 8.43 0.00 0.00 4.42
1350 5086 1.067846 TGACACATAGAAAGAGCGCGT 60.068 47.619 8.43 0.00 0.00 6.01
1351 5087 1.629013 TGACACATAGAAAGAGCGCG 58.371 50.000 0.00 0.00 0.00 6.86
1352 5088 3.190079 TCATGACACATAGAAAGAGCGC 58.810 45.455 0.00 0.00 0.00 5.92
1353 5089 5.980698 AATCATGACACATAGAAAGAGCG 57.019 39.130 0.00 0.00 0.00 5.03
1354 5090 7.983307 AGAAAATCATGACACATAGAAAGAGC 58.017 34.615 0.00 0.00 0.00 4.09
1357 5093 9.565213 GGAAAGAAAATCATGACACATAGAAAG 57.435 33.333 0.00 0.00 0.00 2.62
1358 5094 9.076781 TGGAAAGAAAATCATGACACATAGAAA 57.923 29.630 0.00 0.00 0.00 2.52
1359 5095 8.634335 TGGAAAGAAAATCATGACACATAGAA 57.366 30.769 0.00 0.00 0.00 2.10
1360 5096 8.102676 TCTGGAAAGAAAATCATGACACATAGA 58.897 33.333 0.00 0.00 0.00 1.98
1361 5097 8.272545 TCTGGAAAGAAAATCATGACACATAG 57.727 34.615 0.00 0.00 0.00 2.23
1362 5098 8.812513 ATCTGGAAAGAAAATCATGACACATA 57.187 30.769 0.00 0.00 0.00 2.29
1363 5099 7.713734 ATCTGGAAAGAAAATCATGACACAT 57.286 32.000 0.00 0.00 0.00 3.21
1364 5100 7.449395 AGAATCTGGAAAGAAAATCATGACACA 59.551 33.333 0.00 0.00 0.00 3.72
1365 5101 7.824672 AGAATCTGGAAAGAAAATCATGACAC 58.175 34.615 0.00 0.00 0.00 3.67
1366 5102 8.301720 CAAGAATCTGGAAAGAAAATCATGACA 58.698 33.333 0.00 0.00 0.00 3.58
1367 5103 8.517878 TCAAGAATCTGGAAAGAAAATCATGAC 58.482 33.333 0.00 0.00 0.00 3.06
1368 5104 8.517878 GTCAAGAATCTGGAAAGAAAATCATGA 58.482 33.333 0.00 0.00 0.00 3.07
1373 5109 8.242729 AGTTGTCAAGAATCTGGAAAGAAAAT 57.757 30.769 0.00 0.00 0.00 1.82
1391 5127 2.092429 ACCCTGAAGCTGAAAGTTGTCA 60.092 45.455 0.00 0.00 35.30 3.58
1392 5128 2.576615 ACCCTGAAGCTGAAAGTTGTC 58.423 47.619 0.00 0.00 35.30 3.18
1409 5145 9.925268 CATACGACATTATAGTAAAACAAACCC 57.075 33.333 0.00 0.00 0.00 4.11
1480 5217 1.611673 GGCACATACTGGTGAGCAGTT 60.612 52.381 23.11 8.02 41.32 3.16
1482 5219 0.251354 AGGCACATACTGGTGAGCAG 59.749 55.000 10.51 10.51 41.32 4.24
1492 5229 3.932710 TGTTTGATTCTCGAGGCACATAC 59.067 43.478 13.56 14.16 0.00 2.39
1526 5267 4.528206 GGAAAATTCAGTTTGGGGACATCT 59.472 41.667 0.00 0.00 42.32 2.90
1531 5272 3.506398 GAGGGAAAATTCAGTTTGGGGA 58.494 45.455 0.00 0.00 0.00 4.81
1536 5277 5.356426 CAAAACCGAGGGAAAATTCAGTTT 58.644 37.500 0.00 0.00 0.00 2.66
1538 5459 3.243737 GCAAAACCGAGGGAAAATTCAGT 60.244 43.478 0.00 0.00 0.00 3.41
1547 5468 0.183971 TTGGAAGCAAAACCGAGGGA 59.816 50.000 0.00 0.00 0.00 4.20
1549 5470 1.269569 GGTTTGGAAGCAAAACCGAGG 60.270 52.381 1.01 0.00 45.15 4.63
1563 5485 3.430236 GGGCAAATAAGATTCCGGTTTGG 60.430 47.826 0.00 0.00 40.09 3.28
1569 5491 3.243201 GCTTCTGGGCAAATAAGATTCCG 60.243 47.826 0.00 0.00 0.00 4.30
1586 5508 4.148825 CGTAGGGGCGCTGCTTCT 62.149 66.667 15.11 0.49 0.00 2.85
1615 5537 1.483424 GAGAGGAATGCGCGCTACAC 61.483 60.000 33.29 19.40 0.00 2.90
1642 5564 1.890876 TCGTGATGGTGGTTTCAAGG 58.109 50.000 0.00 0.00 0.00 3.61
1690 5612 0.595095 GTGAACTGAAGCAAGCTGGG 59.405 55.000 0.00 0.00 0.00 4.45
1761 5683 1.728971 GTGATGAGGTTCACGCTCTTG 59.271 52.381 0.00 0.00 36.93 3.02
2253 6181 4.434354 GCCACATACCCGGGCCAA 62.434 66.667 24.08 6.86 41.90 4.52
2316 6244 4.659172 TTTGCAGGTGGAGGCGGG 62.659 66.667 0.00 0.00 0.00 6.13
2337 6265 1.893808 CACATCCATGTAGCCGGCC 60.894 63.158 26.15 9.73 39.39 6.13
2388 6316 1.227527 TATTGGAGACGGCCATGCG 60.228 57.895 2.24 0.00 37.86 4.73
2391 6319 1.213296 AAGGTATTGGAGACGGCCAT 58.787 50.000 2.24 0.00 37.86 4.40
2574 6565 0.386478 CTTCTTGCTTTGCAGGCGAC 60.386 55.000 8.76 0.00 40.61 5.19
2609 6600 4.084888 GTTTTGGAGTCGCCGGCG 62.085 66.667 42.13 42.13 40.66 6.46
2614 6605 0.875059 CCAGAAGGTTTTGGAGTCGC 59.125 55.000 0.00 0.00 36.55 5.19
2649 6640 0.524862 CTTCTTGCTTTGCAGGCGAT 59.475 50.000 8.76 0.00 40.61 4.58
2684 6675 2.032528 CTGGCTTTGGAGACGGCA 59.967 61.111 0.00 0.00 31.56 5.69
2724 6715 1.596477 GGATGGCTCATGAGACGGC 60.596 63.158 27.04 18.31 40.06 5.68
2732 6723 3.550431 CCCGACCGGATGGCTCAT 61.550 66.667 9.46 0.00 39.70 2.90
2892 6883 2.873604 CGCACGTTCGACCGGTTTT 61.874 57.895 9.42 0.00 0.00 2.43
2940 6970 1.070615 CATGGACACCACACGGTCA 59.929 57.895 0.00 0.00 44.71 4.02
2995 7025 2.981350 TTTTGGAGCCGGCGGAAC 60.981 61.111 33.44 21.57 0.00 3.62
3427 7457 0.249573 GTTCGACTGGTTTCGGTGGA 60.250 55.000 0.00 0.00 39.58 4.02
3430 7460 0.872881 CACGTTCGACTGGTTTCGGT 60.873 55.000 0.00 0.00 39.58 4.69
3442 7472 1.859398 CATGGACACCACACGTTCG 59.141 57.895 0.00 0.00 35.80 3.95
3523 7835 4.673298 ATGGACACCGCGCGTTCA 62.673 61.111 29.95 16.15 0.00 3.18
3550 7862 2.742372 CGCCCGACTGGTTTCTGG 60.742 66.667 0.00 0.00 36.04 3.86
3841 8156 2.508526 GTGCTTGTCTTTGGAGATGGT 58.491 47.619 0.00 0.00 33.70 3.55
3979 8294 2.756400 GGCATGGACACCACCTGA 59.244 61.111 0.00 0.00 35.80 3.86
4031 8385 2.597217 TGGTTTTGGAGGCGGCAG 60.597 61.111 13.08 0.00 0.00 4.85
4032 8386 2.597217 CTGGTTTTGGAGGCGGCA 60.597 61.111 13.08 0.00 0.00 5.69
4256 8610 8.660435 AGCTATATTTGGATCTTAGCAAGGTTA 58.340 33.333 0.00 0.00 38.15 2.85
4257 8611 7.521669 AGCTATATTTGGATCTTAGCAAGGTT 58.478 34.615 0.00 0.00 38.15 3.50
4259 8613 7.663081 TCAAGCTATATTTGGATCTTAGCAAGG 59.337 37.037 0.00 0.00 38.15 3.61
4260 8614 8.613060 TCAAGCTATATTTGGATCTTAGCAAG 57.387 34.615 0.00 0.00 38.15 4.01
4306 8667 5.035443 GGCACTCTTTACTAGTACATCGTG 58.965 45.833 0.91 9.17 0.00 4.35
4313 8674 4.322198 CCAAACCGGCACTCTTTACTAGTA 60.322 45.833 0.00 0.00 0.00 1.82
4328 8689 2.342650 CCCAGTCATGCCAAACCGG 61.343 63.158 0.00 0.00 38.11 5.28
4329 8690 1.178534 AACCCAGTCATGCCAAACCG 61.179 55.000 0.00 0.00 0.00 4.44
4448 8810 7.065324 CGGTTTTATGCAGTTTACTCTTCCATA 59.935 37.037 0.00 0.00 0.00 2.74
4449 8811 6.128007 CGGTTTTATGCAGTTTACTCTTCCAT 60.128 38.462 0.00 0.00 0.00 3.41
4450 8812 5.180492 CGGTTTTATGCAGTTTACTCTTCCA 59.820 40.000 0.00 0.00 0.00 3.53
4474 8836 3.228749 CGAATCGATTTGCACATATGGC 58.771 45.455 12.81 8.32 0.00 4.40
4484 8846 6.279227 AGATAGTTTGAGCGAATCGATTTG 57.721 37.500 19.36 19.36 0.00 2.32
4494 8858 5.961843 CACTGCAATTTAGATAGTTTGAGCG 59.038 40.000 0.00 0.00 0.00 5.03
4539 8903 4.778904 ACATCATTTAACCACACGTTTCG 58.221 39.130 0.00 0.00 35.79 3.46
4602 8974 8.961092 CAACTATGCACAATGATATAAGCAAAC 58.039 33.333 0.00 0.00 35.45 2.93
4631 9003 4.939509 ATAGCAAACACGCGTTAATCTT 57.060 36.364 10.22 0.00 33.99 2.40
4639 9011 3.160545 CCTTACAAATAGCAAACACGCG 58.839 45.455 3.53 3.53 36.85 6.01
4640 9012 2.914838 GCCTTACAAATAGCAAACACGC 59.085 45.455 0.00 0.00 0.00 5.34
4641 9013 4.153958 TGCCTTACAAATAGCAAACACG 57.846 40.909 0.00 0.00 30.97 4.49
4666 9038 9.099454 GAATCGACTAACACCAAATCTATTCTT 57.901 33.333 0.00 0.00 0.00 2.52
4814 9186 0.895530 GACTCCTTCCATCGGTCACA 59.104 55.000 0.00 0.00 0.00 3.58
4866 9238 1.257743 TGCTCTTCTCCAGCGTTAGT 58.742 50.000 0.00 0.00 40.01 2.24
4868 9240 1.066858 CCTTGCTCTTCTCCAGCGTTA 60.067 52.381 0.00 0.00 40.01 3.18
4875 9247 1.208293 CTGTACCCCTTGCTCTTCTCC 59.792 57.143 0.00 0.00 0.00 3.71
4886 9258 2.768344 CGGCATCCCTGTACCCCT 60.768 66.667 0.00 0.00 0.00 4.79
4889 9261 3.087906 ACCCGGCATCCCTGTACC 61.088 66.667 0.00 0.00 0.00 3.34
4903 9275 3.068064 CGCCATGTTTCCCCACCC 61.068 66.667 0.00 0.00 0.00 4.61
4906 9278 2.203552 TTGCGCCATGTTTCCCCA 60.204 55.556 4.18 0.00 0.00 4.96
4911 9283 2.048877 GCTGCTTGCGCCATGTTT 60.049 55.556 4.18 0.00 34.43 2.83
4956 9328 2.125512 GCTGCCACCACCTACGAG 60.126 66.667 0.00 0.00 0.00 4.18
4980 9352 2.427095 CACCTCATGTACCATCAGTCGA 59.573 50.000 0.00 0.00 0.00 4.20
4981 9353 2.814269 CACCTCATGTACCATCAGTCG 58.186 52.381 0.00 0.00 0.00 4.18
5277 9649 1.165270 CCCGTCACCTGTTGGATTTC 58.835 55.000 0.00 0.00 37.04 2.17
5284 9656 1.156803 TAGGGACCCGTCACCTGTT 59.843 57.895 4.40 0.00 33.97 3.16
5309 9681 7.830201 CGTAGAGATTAATCTATGGGACCTACT 59.170 40.741 20.37 10.85 37.25 2.57
5330 9702 8.657074 TCTTTTCTTTTCAACAGAATCGTAGA 57.343 30.769 0.00 0.00 45.75 2.59
5334 9706 9.884465 AGTAATCTTTTCTTTTCAACAGAATCG 57.116 29.630 0.00 0.00 30.26 3.34
5338 9710 9.057089 GGAGAGTAATCTTTTCTTTTCAACAGA 57.943 33.333 0.00 0.00 0.00 3.41
5341 9713 8.076781 GGTGGAGAGTAATCTTTTCTTTTCAAC 58.923 37.037 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.