Multiple sequence alignment - TraesCS2A01G115000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G115000 chr2A 100.000 7187 0 0 1 7187 65671433 65664247 0.000000e+00 13272.0
1 TraesCS2A01G115000 chr2A 96.255 267 10 0 6578 6844 589517533 589517267 8.560000e-119 438.0
2 TraesCS2A01G115000 chr2A 92.254 142 7 3 1293 1434 65669998 65669861 1.580000e-46 198.0
3 TraesCS2A01G115000 chr2A 92.254 142 7 3 1436 1573 65670141 65670000 1.580000e-46 198.0
4 TraesCS2A01G115000 chr2B 95.385 3770 132 16 1179 4943 100339155 100335423 0.000000e+00 5960.0
5 TraesCS2A01G115000 chr2B 96.310 786 23 3 4902 5683 100335356 100334573 0.000000e+00 1286.0
6 TraesCS2A01G115000 chr2B 95.522 737 29 3 442 1174 100340029 100339293 0.000000e+00 1175.0
7 TraesCS2A01G115000 chr2B 93.919 444 16 2 1 444 100340502 100340070 0.000000e+00 660.0
8 TraesCS2A01G115000 chr2B 91.000 400 30 5 5725 6119 100334571 100334173 1.060000e-147 534.0
9 TraesCS2A01G115000 chr2B 90.842 273 20 5 6140 6411 100334093 100333825 1.910000e-95 361.0
10 TraesCS2A01G115000 chr2B 92.647 136 6 4 1295 1430 100338896 100338765 7.360000e-45 193.0
11 TraesCS2A01G115000 chr2B 78.491 265 24 12 6882 7117 100333771 100333511 7.520000e-30 143.0
12 TraesCS2A01G115000 chr2B 91.667 48 2 1 7142 7187 100333507 100333460 1.670000e-06 65.8
13 TraesCS2A01G115000 chr2D 95.927 3118 105 11 442 3548 64188227 64185121 0.000000e+00 5035.0
14 TraesCS2A01G115000 chr2D 92.187 2483 117 43 3679 6129 64185118 64182681 0.000000e+00 3439.0
15 TraesCS2A01G115000 chr2D 95.495 444 19 1 1 444 64188711 64188269 0.000000e+00 708.0
16 TraesCS2A01G115000 chr2D 91.268 355 23 4 6231 6580 64182470 64182119 1.810000e-130 477.0
17 TraesCS2A01G115000 chr2D 92.958 142 5 3 1293 1434 64187234 64187098 1.220000e-47 202.0
18 TraesCS2A01G115000 chr2D 88.489 139 13 3 1436 1571 64187375 64187237 1.600000e-36 165.0
19 TraesCS2A01G115000 chr7A 96.255 267 10 0 6578 6844 572373037 572372771 8.560000e-119 438.0
20 TraesCS2A01G115000 chr7A 86.559 186 22 3 5437 5621 104530948 104530765 1.220000e-47 202.0
21 TraesCS2A01G115000 chr7A 88.182 110 9 3 5618 5726 104517460 104517354 2.100000e-25 128.0
22 TraesCS2A01G115000 chr5A 96.591 264 9 0 6578 6841 625030859 625031122 8.560000e-119 438.0
23 TraesCS2A01G115000 chr5A 96.212 264 10 0 6578 6841 151650527 151650790 3.980000e-117 433.0
24 TraesCS2A01G115000 chr4A 96.591 264 9 0 6578 6841 474005141 474005404 8.560000e-119 438.0
25 TraesCS2A01G115000 chr1A 96.591 264 9 0 6578 6841 369171726 369171989 8.560000e-119 438.0
26 TraesCS2A01G115000 chr1A 95.880 267 11 0 6578 6844 92312444 92312178 3.980000e-117 433.0
27 TraesCS2A01G115000 chr1A 95.880 267 11 0 6578 6844 259841423 259841157 3.980000e-117 433.0
28 TraesCS2A01G115000 chr4B 96.212 264 10 0 6578 6841 622768939 622769202 3.980000e-117 433.0
29 TraesCS2A01G115000 chr4B 86.047 301 26 13 5437 5726 631789655 631789950 7.000000e-80 309.0
30 TraesCS2A01G115000 chr5D 88.014 292 28 6 5437 5726 262397798 262397512 8.930000e-89 339.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G115000 chr2A 65664247 65671433 7186 True 4556.000000 13272 94.836000 1 7187 3 chr2A.!!$R2 7186
1 TraesCS2A01G115000 chr2B 100333460 100340502 7042 True 1153.088889 5960 91.753667 1 7187 9 chr2B.!!$R1 7186
2 TraesCS2A01G115000 chr2D 64182119 64188711 6592 True 1671.000000 5035 92.720667 1 6580 6 chr2D.!!$R1 6579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.322636 TCTCTCACAGGGACGAGGAC 60.323 60.000 0.00 0.0 0.00 3.85 F
1061 1108 0.600557 AAGAGTGCCAGAGTCAGTCG 59.399 55.000 0.00 0.0 38.55 4.18 F
1063 1110 0.109504 GAGTGCCAGAGTCAGTCGAC 60.110 60.000 7.70 7.7 42.95 4.20 F
1273 1456 1.701847 GATGGACCATATGAGGGCACT 59.298 52.381 7.05 0.0 38.98 4.40 F
2444 2630 2.097825 CATTCCCTGCTTCTTCTTGGG 58.902 52.381 0.00 0.0 39.22 4.12 F
3544 3737 2.050144 TCTTCTGGTCAACTGCTTCCT 58.950 47.619 0.00 0.0 0.00 3.36 F
3981 4174 0.462581 GCATGTACTGCCAGCTGCTA 60.463 55.000 8.66 0.0 45.66 3.49 F
5217 5522 0.036294 GCTACCCAGACACTTCCACC 60.036 60.000 0.00 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1063 1110 1.417890 CCTGGTAGGAGTAGCATTGGG 59.582 57.143 0.00 0.00 37.67 4.12 R
2751 2939 3.436704 ACATGGCTAAACACGTCATCTTG 59.563 43.478 0.00 0.00 0.00 3.02 R
3001 3193 4.036852 GGGAAGTTTCTTTGACCACAGAAG 59.963 45.833 0.00 0.00 0.00 2.85 R
3189 3381 3.392616 ACTCCAGCTATCAGGGTAAATGG 59.607 47.826 0.00 0.00 0.00 3.16 R
3822 4015 1.064654 GGAATGCCAGAATTCGTCAGC 59.935 52.381 0.00 2.71 37.42 4.26 R
4827 5020 0.108585 AGAGCTGCCAGTTTCCGAAA 59.891 50.000 0.00 0.00 0.00 3.46 R
5971 6289 0.103208 GCACGATCAGACCGGAGATT 59.897 55.000 9.46 0.00 0.00 2.40 R
6843 7312 0.101759 CTTTGCTGAATGCCGATGGG 59.898 55.000 0.00 0.00 42.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.322636 TCTCTCACAGGGACGAGGAC 60.323 60.000 0.00 0.00 0.00 3.85
38 39 1.689582 GGGACGAGGACCAGGGAAT 60.690 63.158 0.00 0.00 0.00 3.01
42 43 1.829222 GACGAGGACCAGGGAATGTAA 59.171 52.381 0.00 0.00 0.00 2.41
184 185 2.553028 GGATGAGGAGCAAGAAACCACA 60.553 50.000 0.00 0.00 0.00 4.17
385 386 0.610785 GGGCGGAATTTGGTCTCCAA 60.611 55.000 0.00 0.00 42.29 3.53
406 407 5.591877 CCAATTGAGAGAAATAGACAAGGGG 59.408 44.000 7.12 0.00 0.00 4.79
408 409 5.422214 TTGAGAGAAATAGACAAGGGGAC 57.578 43.478 0.00 0.00 0.00 4.46
642 688 9.935241 TGTATTCTAGATGAAGCATTCCTATTC 57.065 33.333 0.00 0.00 46.93 1.75
773 820 9.257651 CTATATGATGGCTGTACATGATATGTG 57.742 37.037 0.00 6.00 44.60 3.21
914 961 7.587392 GCATCAAGTTTGTTTTTAATGCTTTCC 59.413 33.333 0.00 0.00 36.29 3.13
938 985 4.997905 TTTCTCTTTCTGCTCACGATTG 57.002 40.909 0.00 0.00 0.00 2.67
963 1010 7.560991 TGTGAGATCCTTAATATTTTGCACCAT 59.439 33.333 0.00 0.00 0.00 3.55
1061 1108 0.600557 AAGAGTGCCAGAGTCAGTCG 59.399 55.000 0.00 0.00 38.55 4.18
1063 1110 0.109504 GAGTGCCAGAGTCAGTCGAC 60.110 60.000 7.70 7.70 42.95 4.20
1067 1114 1.816863 GCCAGAGTCAGTCGACCCAA 61.817 60.000 13.01 0.00 43.73 4.12
1118 1165 7.827236 TCCCTCAGACGATGTTAATTGTTAAAT 59.173 33.333 0.00 0.00 29.93 1.40
1125 1172 8.276252 ACGATGTTAATTGTTAAATAGCCAGT 57.724 30.769 0.00 0.00 0.00 4.00
1146 1195 6.366332 CCAGTTATATAGGTTAGAGCTTTGCG 59.634 42.308 0.00 0.00 0.00 4.85
1273 1456 1.701847 GATGGACCATATGAGGGCACT 59.298 52.381 7.05 0.00 38.98 4.40
1503 1686 2.389713 GCAACCATGCGATCATGTAC 57.610 50.000 4.80 0.00 46.64 2.90
1636 1819 8.522830 TGTCAAGGAAAAATGAGATGTAATTCC 58.477 33.333 0.00 0.00 36.06 3.01
1655 1838 9.127277 GTAATTCCTAAAAGGTGCATAATGGTA 57.873 33.333 0.00 0.00 36.53 3.25
1656 1839 8.602472 AATTCCTAAAAGGTGCATAATGGTAA 57.398 30.769 0.00 0.00 36.53 2.85
1657 1840 8.782137 ATTCCTAAAAGGTGCATAATGGTAAT 57.218 30.769 0.00 0.00 36.53 1.89
1658 1841 8.602472 TTCCTAAAAGGTGCATAATGGTAATT 57.398 30.769 0.00 0.00 36.53 1.40
1659 1842 8.006298 TCCTAAAAGGTGCATAATGGTAATTG 57.994 34.615 0.00 0.00 36.53 2.32
1660 1843 7.069331 TCCTAAAAGGTGCATAATGGTAATTGG 59.931 37.037 0.00 0.00 36.53 3.16
1661 1844 6.619329 AAAAGGTGCATAATGGTAATTGGT 57.381 33.333 0.00 0.00 0.00 3.67
1774 1957 8.800031 GTTTTGCGTTACATTTTTCAGTAGAAA 58.200 29.630 0.00 0.00 41.78 2.52
2377 2563 6.533012 TCTCATAAGCGCTTTCTGCATATATC 59.467 38.462 30.13 0.00 43.06 1.63
2444 2630 2.097825 CATTCCCTGCTTCTTCTTGGG 58.902 52.381 0.00 0.00 39.22 4.12
2456 2642 3.347216 TCTTCTTGGGCTTGACATAAGC 58.653 45.455 3.16 3.16 42.30 3.09
2657 2843 6.516478 CTCATGTGGAGTGATATGTAAACG 57.484 41.667 0.00 0.00 38.90 3.60
2713 2899 5.205056 TGGTTACAAAATTTGACAGTCCCT 58.795 37.500 13.19 0.00 0.00 4.20
2725 2911 3.136443 TGACAGTCCCTCAAAGTTCATGT 59.864 43.478 0.00 0.00 0.00 3.21
2746 2932 7.701924 TCATGTCACTGCTCTGTTTTTAAAAAG 59.298 33.333 13.58 3.61 0.00 2.27
2747 2933 6.919721 TGTCACTGCTCTGTTTTTAAAAAGT 58.080 32.000 13.58 3.73 0.00 2.66
2751 2939 7.971722 TCACTGCTCTGTTTTTAAAAAGTAACC 59.028 33.333 13.58 2.84 0.00 2.85
2790 2978 5.536161 AGCCATGTTATGTGTTCTTGAAACT 59.464 36.000 0.00 0.00 0.00 2.66
2848 3040 9.081204 ACATTTATTGCAAGATATTATGCCTCA 57.919 29.630 4.94 0.00 41.87 3.86
2989 3181 4.427312 CATCTGAAAGCCCAGTTATTTGC 58.573 43.478 0.00 0.00 35.71 3.68
3011 3203 5.039333 GCATTTGAATATGCTTCTGTGGTC 58.961 41.667 0.00 0.00 45.80 4.02
3090 3282 6.092944 CACGACTCACATAGTTAGTCTTCTCT 59.907 42.308 9.11 0.00 39.07 3.10
3124 3316 8.816894 AGTGACCTAGTTTGAATTATTCTCTCA 58.183 33.333 6.50 0.00 0.00 3.27
3159 3351 9.098355 TGAATGACTATTGTACTTGATGCTAAC 57.902 33.333 0.00 0.00 0.00 2.34
3162 3354 6.750501 TGACTATTGTACTTGATGCTAACGAC 59.249 38.462 0.00 0.00 0.00 4.34
3166 3358 4.878439 TGTACTTGATGCTAACGACTTGT 58.122 39.130 0.00 0.00 0.00 3.16
3175 3367 6.653320 TGATGCTAACGACTTGTTATTTCCTT 59.347 34.615 0.00 0.00 42.02 3.36
3221 3413 6.429385 CCCTGATAGCTGGAGTTTATGAAATC 59.571 42.308 5.34 0.00 35.28 2.17
3247 3439 5.354234 TGTTTCCTGTCACTTCTTTGAACTC 59.646 40.000 0.00 0.00 0.00 3.01
3313 3506 5.815233 ATCTGTATGACGATCATCCCTTT 57.185 39.130 4.15 0.00 38.26 3.11
3528 3721 8.271487 GCAGTTTTGTCATTTCTGAAATTCTTC 58.729 33.333 12.74 5.17 31.85 2.87
3544 3737 2.050144 TCTTCTGGTCAACTGCTTCCT 58.950 47.619 0.00 0.00 0.00 3.36
3548 3741 3.239449 TCTGGTCAACTGCTTCCTAAGA 58.761 45.455 0.00 0.00 0.00 2.10
3549 3742 3.840666 TCTGGTCAACTGCTTCCTAAGAT 59.159 43.478 0.00 0.00 0.00 2.40
3550 3743 5.023452 TCTGGTCAACTGCTTCCTAAGATA 58.977 41.667 0.00 0.00 0.00 1.98
3551 3744 5.483937 TCTGGTCAACTGCTTCCTAAGATAA 59.516 40.000 0.00 0.00 0.00 1.75
3552 3745 6.156949 TCTGGTCAACTGCTTCCTAAGATAAT 59.843 38.462 0.00 0.00 0.00 1.28
3553 3746 6.721318 TGGTCAACTGCTTCCTAAGATAATT 58.279 36.000 0.00 0.00 0.00 1.40
3554 3747 7.175104 TGGTCAACTGCTTCCTAAGATAATTT 58.825 34.615 0.00 0.00 0.00 1.82
3581 3774 8.375493 ACTTAGTATGTTACCTGAATTCTGGA 57.625 34.615 31.43 15.97 38.22 3.86
3595 3788 7.557719 CCTGAATTCTGGACATAACCTTGTAAT 59.442 37.037 23.28 0.00 37.15 1.89
3596 3789 8.877864 TGAATTCTGGACATAACCTTGTAATT 57.122 30.769 7.05 0.00 0.00 1.40
3597 3790 9.308000 TGAATTCTGGACATAACCTTGTAATTT 57.692 29.630 7.05 0.00 0.00 1.82
3628 3821 4.081642 TGAACATAACTGCCTCACCTCTAC 60.082 45.833 0.00 0.00 0.00 2.59
3656 3849 7.117241 TCTTGAATTAGTTTTACTGCTCGTG 57.883 36.000 0.00 0.00 0.00 4.35
3683 3876 7.445121 TCCTGGCTGTATTCATCTGTAATAAG 58.555 38.462 0.00 0.00 0.00 1.73
3816 4009 6.149973 CCATGTATCTTCTCTTTGTGAAAGCA 59.850 38.462 0.00 0.00 38.39 3.91
3822 4015 4.536364 TCTCTTTGTGAAAGCAGAAACG 57.464 40.909 0.00 0.00 38.39 3.60
3936 4129 2.623418 ACACCAGTCCTGATGAGGTA 57.377 50.000 0.00 0.00 40.76 3.08
3939 4132 3.846588 ACACCAGTCCTGATGAGGTAATT 59.153 43.478 0.00 0.00 40.76 1.40
3981 4174 0.462581 GCATGTACTGCCAGCTGCTA 60.463 55.000 8.66 0.00 45.66 3.49
4100 4293 4.278919 TGACCTTGTCACTGACATACGTAA 59.721 41.667 12.71 0.62 42.40 3.18
4132 4325 0.553333 TCCCAATGTCACCAACACCA 59.447 50.000 0.00 0.00 41.75 4.17
4134 4327 1.759445 CCCAATGTCACCAACACCAAA 59.241 47.619 0.00 0.00 41.75 3.28
4206 4399 3.276857 TGATGAGCTTGAGGAAATCTGC 58.723 45.455 0.00 0.00 0.00 4.26
4407 4600 1.588667 GCCACTGTGCAAACCAACG 60.589 57.895 1.29 0.00 0.00 4.10
4758 4951 9.177608 TCCTCATTTTTCTGAACATAATACCTG 57.822 33.333 0.00 0.00 0.00 4.00
4815 5008 3.508845 AGCTACAACTGGAACAATGGT 57.491 42.857 0.00 0.00 38.70 3.55
4824 5017 6.493115 ACAACTGGAACAATGGTTATGAATCA 59.507 34.615 0.00 0.00 38.70 2.57
4827 5020 8.137745 ACTGGAACAATGGTTATGAATCAAAT 57.862 30.769 0.00 0.00 38.70 2.32
4858 5051 0.510359 GCAGCTCTTCTGTCGTTGTG 59.490 55.000 0.00 0.00 44.66 3.33
4946 5248 3.817647 GCTAGCAAGGGATATGAAACAGG 59.182 47.826 10.63 0.00 0.00 4.00
5217 5522 0.036294 GCTACCCAGACACTTCCACC 60.036 60.000 0.00 0.00 0.00 4.61
5226 5531 2.203182 ACTTCCACCGTCCCTGGA 59.797 61.111 0.00 0.00 35.91 3.86
5308 5613 3.754740 CTCCTCGAGAGCTGCTGCG 62.755 68.421 15.71 11.14 45.42 5.18
5316 5621 4.427661 AGCTGCTGCGTCTCCGTC 62.428 66.667 10.14 0.00 45.42 4.79
5520 5825 0.249868 TGCTCAACTCCAAGGTCACG 60.250 55.000 0.00 0.00 0.00 4.35
5609 5918 3.526931 AGTATGGTGTCTTGATCGGTG 57.473 47.619 0.00 0.00 0.00 4.94
5629 5938 4.096081 GGTGCTGAAAAGGAAGATCATCTG 59.904 45.833 0.00 0.00 0.00 2.90
5637 5946 3.904717 AGGAAGATCATCTGTAGACCGT 58.095 45.455 0.00 0.00 0.00 4.83
5638 5947 5.050126 AGGAAGATCATCTGTAGACCGTA 57.950 43.478 0.00 0.00 0.00 4.02
5683 5992 2.625790 TCCCAAGTTAAATTTGCGCTGT 59.374 40.909 9.73 0.00 0.00 4.40
5688 5997 6.092748 CCAAGTTAAATTTGCGCTGTTAGAT 58.907 36.000 9.73 0.00 0.00 1.98
5690 5999 7.201350 CCAAGTTAAATTTGCGCTGTTAGATTC 60.201 37.037 9.73 0.00 0.00 2.52
5743 6052 7.874940 TGCGTAGTAGTAACTTCTAACTGAAA 58.125 34.615 0.00 0.00 37.15 2.69
5744 6053 7.805071 TGCGTAGTAGTAACTTCTAACTGAAAC 59.195 37.037 0.00 0.00 37.15 2.78
5745 6054 7.805071 GCGTAGTAGTAACTTCTAACTGAAACA 59.195 37.037 0.00 0.00 37.15 2.83
5746 6055 9.669353 CGTAGTAGTAACTTCTAACTGAAACAA 57.331 33.333 0.00 0.00 37.15 2.83
5795 6106 7.318141 CCTGATCTATTGCACAGAAACAAAAT 58.682 34.615 1.50 0.00 32.90 1.82
5820 6131 4.851639 AATCCTTGGCTAGAACTCACAT 57.148 40.909 0.00 0.00 0.00 3.21
5869 6183 0.543749 GAGGCAGCTCCCTTGTATGT 59.456 55.000 0.00 0.00 34.69 2.29
5875 6189 3.565902 GCAGCTCCCTTGTATGTTTATCC 59.434 47.826 0.00 0.00 0.00 2.59
5877 6191 3.454812 AGCTCCCTTGTATGTTTATCCGT 59.545 43.478 0.00 0.00 0.00 4.69
5892 6206 0.453282 TCCGTAGCGAGAAACGAACG 60.453 55.000 0.00 0.00 45.36 3.95
5908 6222 3.913573 CGGCTCGGTCATTTCGCG 61.914 66.667 0.00 0.00 0.00 5.87
5939 6256 0.870393 ATCTGAACTTGCTGCGTGTG 59.130 50.000 0.00 0.00 0.00 3.82
5989 6307 2.196749 CAAATCTCCGGTCTGATCGTG 58.803 52.381 9.73 2.09 0.00 4.35
6043 6361 1.838913 TTCTGCTGCTTGCGTTTTTC 58.161 45.000 0.00 0.00 46.63 2.29
6066 6385 6.464222 TCATTTGGAGAACTACCACTACTTG 58.536 40.000 0.00 0.00 37.13 3.16
6084 6403 7.274904 CACTACTTGTTATAGCGCTTTCTTGTA 59.725 37.037 18.68 9.86 0.00 2.41
6090 6409 9.929722 TTGTTATAGCGCTTTCTTGTATTATTG 57.070 29.630 18.68 0.00 0.00 1.90
6116 6481 5.379706 AGCCCTAAAGCAGAATGAAGTAT 57.620 39.130 0.00 0.00 39.69 2.12
6216 6640 5.294552 GCTCCAAACTGAATGGTGATACTAC 59.705 44.000 8.83 0.00 39.09 2.73
6286 6751 2.514824 GATTGGGCCTGCGTCCTC 60.515 66.667 4.53 0.00 0.00 3.71
6295 6760 4.451150 TGCGTCCTCGGCCATGTC 62.451 66.667 2.24 0.00 37.56 3.06
6346 6811 1.581447 GGGAGCTTCTTTTGTGCCG 59.419 57.895 0.00 0.00 0.00 5.69
6412 6877 6.063640 TCATCATATTTCGCTTTGTCCATG 57.936 37.500 0.00 0.00 0.00 3.66
6414 6879 5.895636 TCATATTTCGCTTTGTCCATGTT 57.104 34.783 0.00 0.00 0.00 2.71
6417 6882 4.853924 ATTTCGCTTTGTCCATGTTTCT 57.146 36.364 0.00 0.00 0.00 2.52
6418 6883 3.896648 TTCGCTTTGTCCATGTTTCTC 57.103 42.857 0.00 0.00 0.00 2.87
6461 6926 2.365293 GTCCAAGGCCACAAACTTTCAT 59.635 45.455 5.01 0.00 0.00 2.57
6512 6977 8.121305 TCCATGTCAATGTTAATAAAGCACTT 57.879 30.769 0.00 0.00 31.27 3.16
6514 6979 7.489113 CCATGTCAATGTTAATAAAGCACTTCC 59.511 37.037 0.00 0.00 31.27 3.46
6515 6980 7.759489 TGTCAATGTTAATAAAGCACTTCCT 57.241 32.000 0.00 0.00 0.00 3.36
6522 6987 0.036388 TAAAGCACTTCCTCTGCCGG 60.036 55.000 0.00 0.00 35.01 6.13
6580 7049 5.153950 AGAGTCCCTGAACAAATGAGTAC 57.846 43.478 0.00 0.00 0.00 2.73
6581 7050 4.841246 AGAGTCCCTGAACAAATGAGTACT 59.159 41.667 0.00 0.00 0.00 2.73
6582 7051 5.046950 AGAGTCCCTGAACAAATGAGTACTC 60.047 44.000 16.32 16.32 0.00 2.59
6583 7052 4.020128 AGTCCCTGAACAAATGAGTACTCC 60.020 45.833 20.11 3.40 0.00 3.85
6584 7053 3.263425 TCCCTGAACAAATGAGTACTCCC 59.737 47.826 20.11 0.00 0.00 4.30
6585 7054 3.264450 CCCTGAACAAATGAGTACTCCCT 59.736 47.826 20.11 4.85 0.00 4.20
6586 7055 4.508662 CCTGAACAAATGAGTACTCCCTC 58.491 47.826 20.11 7.92 0.00 4.30
6587 7056 4.223923 CCTGAACAAATGAGTACTCCCTCT 59.776 45.833 20.11 0.00 32.50 3.69
6588 7057 5.152623 TGAACAAATGAGTACTCCCTCTG 57.847 43.478 20.11 13.55 32.50 3.35
6589 7058 4.593206 TGAACAAATGAGTACTCCCTCTGT 59.407 41.667 20.11 14.13 32.50 3.41
6590 7059 4.810191 ACAAATGAGTACTCCCTCTGTC 57.190 45.455 20.11 0.00 32.50 3.51
6591 7060 3.515901 ACAAATGAGTACTCCCTCTGTCC 59.484 47.826 20.11 0.00 32.50 4.02
6592 7061 3.474798 AATGAGTACTCCCTCTGTCCA 57.525 47.619 20.11 0.00 32.50 4.02
6593 7062 3.697190 ATGAGTACTCCCTCTGTCCAT 57.303 47.619 20.11 1.39 32.50 3.41
6594 7063 2.739943 TGAGTACTCCCTCTGTCCATG 58.260 52.381 20.11 0.00 32.50 3.66
6595 7064 2.311841 TGAGTACTCCCTCTGTCCATGA 59.688 50.000 20.11 0.00 32.50 3.07
6596 7065 3.245622 TGAGTACTCCCTCTGTCCATGAA 60.246 47.826 20.11 0.00 32.50 2.57
6597 7066 3.964031 GAGTACTCCCTCTGTCCATGAAT 59.036 47.826 12.13 0.00 0.00 2.57
6598 7067 5.141182 GAGTACTCCCTCTGTCCATGAATA 58.859 45.833 12.13 0.00 0.00 1.75
6599 7068 5.529289 AGTACTCCCTCTGTCCATGAATAA 58.471 41.667 0.00 0.00 0.00 1.40
6600 7069 5.964477 AGTACTCCCTCTGTCCATGAATAAA 59.036 40.000 0.00 0.00 0.00 1.40
6601 7070 5.983333 ACTCCCTCTGTCCATGAATAAAT 57.017 39.130 0.00 0.00 0.00 1.40
6602 7071 5.688807 ACTCCCTCTGTCCATGAATAAATG 58.311 41.667 0.00 0.00 0.00 2.32
6603 7072 5.192522 ACTCCCTCTGTCCATGAATAAATGT 59.807 40.000 0.00 0.00 0.00 2.71
6604 7073 6.386927 ACTCCCTCTGTCCATGAATAAATGTA 59.613 38.462 0.00 0.00 0.00 2.29
6605 7074 6.591935 TCCCTCTGTCCATGAATAAATGTAC 58.408 40.000 0.00 0.00 0.00 2.90
6606 7075 6.386927 TCCCTCTGTCCATGAATAAATGTACT 59.613 38.462 0.00 0.00 0.00 2.73
6607 7076 7.056635 CCCTCTGTCCATGAATAAATGTACTT 58.943 38.462 0.00 0.00 0.00 2.24
6608 7077 7.227512 CCCTCTGTCCATGAATAAATGTACTTC 59.772 40.741 0.00 0.00 0.00 3.01
6609 7078 7.989741 CCTCTGTCCATGAATAAATGTACTTCT 59.010 37.037 0.00 0.00 0.00 2.85
6612 7081 8.662781 TGTCCATGAATAAATGTACTTCTAGC 57.337 34.615 0.00 0.00 0.00 3.42
6613 7082 8.486210 TGTCCATGAATAAATGTACTTCTAGCT 58.514 33.333 0.00 0.00 0.00 3.32
6614 7083 9.331282 GTCCATGAATAAATGTACTTCTAGCTT 57.669 33.333 0.00 0.00 0.00 3.74
6615 7084 9.905713 TCCATGAATAAATGTACTTCTAGCTTT 57.094 29.630 0.00 0.00 0.00 3.51
6625 7094 9.780186 AATGTACTTCTAGCTTTTGTCTTAAGT 57.220 29.630 1.63 0.00 0.00 2.24
6626 7095 9.780186 ATGTACTTCTAGCTTTTGTCTTAAGTT 57.220 29.630 1.63 0.00 0.00 2.66
6668 7137 9.733556 TGATCAACTTTATAGGAAAAAGTAGCA 57.266 29.630 0.00 0.00 44.35 3.49
6670 7139 8.040716 TCAACTTTATAGGAAAAAGTAGCAGC 57.959 34.615 1.96 0.00 44.35 5.25
6671 7140 7.663905 TCAACTTTATAGGAAAAAGTAGCAGCA 59.336 33.333 0.00 0.00 44.35 4.41
6672 7141 8.462016 CAACTTTATAGGAAAAAGTAGCAGCAT 58.538 33.333 0.00 0.00 44.35 3.79
6673 7142 8.581253 ACTTTATAGGAAAAAGTAGCAGCATT 57.419 30.769 0.00 0.00 43.54 3.56
6674 7143 9.025041 ACTTTATAGGAAAAAGTAGCAGCATTT 57.975 29.630 0.00 0.00 43.54 2.32
6678 7147 8.752005 ATAGGAAAAAGTAGCAGCATTTATGA 57.248 30.769 0.00 0.00 0.00 2.15
6679 7148 6.856895 AGGAAAAAGTAGCAGCATTTATGAC 58.143 36.000 0.00 0.00 0.00 3.06
6680 7149 6.434028 AGGAAAAAGTAGCAGCATTTATGACA 59.566 34.615 0.00 0.00 0.00 3.58
6681 7150 6.528072 GGAAAAAGTAGCAGCATTTATGACAC 59.472 38.462 0.00 0.00 0.00 3.67
6682 7151 6.824305 AAAAGTAGCAGCATTTATGACACT 57.176 33.333 0.00 0.00 0.00 3.55
6683 7152 7.921786 AAAAGTAGCAGCATTTATGACACTA 57.078 32.000 0.00 0.00 0.00 2.74
6684 7153 7.921786 AAAGTAGCAGCATTTATGACACTAA 57.078 32.000 0.00 0.00 0.00 2.24
6685 7154 7.921786 AAGTAGCAGCATTTATGACACTAAA 57.078 32.000 0.00 0.00 0.00 1.85
6686 7155 8.511604 AAGTAGCAGCATTTATGACACTAAAT 57.488 30.769 0.00 0.00 32.76 1.40
6687 7156 8.511604 AGTAGCAGCATTTATGACACTAAATT 57.488 30.769 0.00 0.00 30.68 1.82
6688 7157 9.613428 AGTAGCAGCATTTATGACACTAAATTA 57.387 29.630 0.00 0.00 30.68 1.40
6689 7158 9.869844 GTAGCAGCATTTATGACACTAAATTAG 57.130 33.333 0.00 0.00 30.68 1.73
6690 7159 8.511604 AGCAGCATTTATGACACTAAATTAGT 57.488 30.769 0.00 0.00 40.28 2.24
6691 7160 8.960591 AGCAGCATTTATGACACTAAATTAGTT 58.039 29.630 2.41 0.00 36.76 2.24
6692 7161 9.573133 GCAGCATTTATGACACTAAATTAGTTT 57.427 29.630 2.41 0.00 36.76 2.66
6704 7173 9.924650 ACACTAAATTAGTTTCACTAGATTCGT 57.075 29.630 2.41 0.00 36.76 3.85
6812 7281 7.730364 CTTTGACTTAGAACAAAGGCTAGAA 57.270 36.000 19.47 0.00 44.95 2.10
6813 7282 7.730364 TTTGACTTAGAACAAAGGCTAGAAG 57.270 36.000 0.00 0.00 35.37 2.85
6814 7283 6.420913 TGACTTAGAACAAAGGCTAGAAGT 57.579 37.500 0.00 0.00 35.37 3.01
6815 7284 7.534723 TGACTTAGAACAAAGGCTAGAAGTA 57.465 36.000 0.00 0.00 35.37 2.24
6816 7285 7.376615 TGACTTAGAACAAAGGCTAGAAGTAC 58.623 38.462 0.00 0.00 35.37 2.73
6817 7286 7.014905 TGACTTAGAACAAAGGCTAGAAGTACA 59.985 37.037 0.00 0.00 35.37 2.90
6818 7287 7.153315 ACTTAGAACAAAGGCTAGAAGTACAC 58.847 38.462 0.00 0.00 0.00 2.90
6819 7288 5.810080 AGAACAAAGGCTAGAAGTACACT 57.190 39.130 0.00 0.00 0.00 3.55
6820 7289 6.176014 AGAACAAAGGCTAGAAGTACACTT 57.824 37.500 0.00 0.00 39.23 3.16
6821 7290 7.299246 AGAACAAAGGCTAGAAGTACACTTA 57.701 36.000 0.00 0.00 36.11 2.24
6822 7291 7.908453 AGAACAAAGGCTAGAAGTACACTTAT 58.092 34.615 0.00 0.00 36.11 1.73
6823 7292 8.376270 AGAACAAAGGCTAGAAGTACACTTATT 58.624 33.333 0.00 0.00 36.11 1.40
6824 7293 8.549338 AACAAAGGCTAGAAGTACACTTATTC 57.451 34.615 0.00 0.00 36.11 1.75
6825 7294 6.812160 ACAAAGGCTAGAAGTACACTTATTCG 59.188 38.462 0.00 0.00 36.11 3.34
6826 7295 4.934515 AGGCTAGAAGTACACTTATTCGC 58.065 43.478 0.00 0.00 36.11 4.70
6827 7296 3.729716 GGCTAGAAGTACACTTATTCGCG 59.270 47.826 0.00 0.00 36.11 5.87
6828 7297 3.729716 GCTAGAAGTACACTTATTCGCGG 59.270 47.826 6.13 0.00 36.11 6.46
6829 7298 4.497006 GCTAGAAGTACACTTATTCGCGGA 60.497 45.833 6.13 0.00 36.11 5.54
6830 7299 4.030134 AGAAGTACACTTATTCGCGGAG 57.970 45.455 6.13 2.02 36.11 4.63
6831 7300 2.865343 AGTACACTTATTCGCGGAGG 57.135 50.000 6.13 0.00 0.00 4.30
6832 7301 1.407979 AGTACACTTATTCGCGGAGGG 59.592 52.381 6.13 3.19 44.04 4.30
6833 7302 4.438841 AAGTACACTTATTCGCGGAGGGA 61.439 47.826 6.13 0.00 40.44 4.20
6834 7303 6.230313 AAGTACACTTATTCGCGGAGGGAG 62.230 50.000 6.13 0.00 42.08 4.30
6841 7310 3.739167 CGCGGAGGGAGAGAGTAG 58.261 66.667 0.00 0.00 46.37 2.57
6842 7311 1.146485 CGCGGAGGGAGAGAGTAGA 59.854 63.158 0.00 0.00 46.37 2.59
6843 7312 1.161563 CGCGGAGGGAGAGAGTAGAC 61.162 65.000 0.00 0.00 46.37 2.59
6844 7313 0.820482 GCGGAGGGAGAGAGTAGACC 60.820 65.000 0.00 0.00 0.00 3.85
6845 7314 0.179012 CGGAGGGAGAGAGTAGACCC 60.179 65.000 0.00 0.00 42.36 4.46
6846 7315 0.927767 GGAGGGAGAGAGTAGACCCA 59.072 60.000 0.00 0.00 44.25 4.51
6847 7316 1.501604 GGAGGGAGAGAGTAGACCCAT 59.498 57.143 0.00 0.00 44.25 4.00
6848 7317 2.490168 GGAGGGAGAGAGTAGACCCATC 60.490 59.091 0.00 0.00 44.25 3.51
6849 7318 1.144093 AGGGAGAGAGTAGACCCATCG 59.856 57.143 0.00 0.00 44.25 3.84
6850 7319 1.611519 GGAGAGAGTAGACCCATCGG 58.388 60.000 0.00 0.00 0.00 4.18
6851 7320 0.955905 GAGAGAGTAGACCCATCGGC 59.044 60.000 0.00 0.00 0.00 5.54
6852 7321 0.259065 AGAGAGTAGACCCATCGGCA 59.741 55.000 0.00 0.00 0.00 5.69
6853 7322 1.133325 AGAGAGTAGACCCATCGGCAT 60.133 52.381 0.00 0.00 0.00 4.40
6854 7323 1.689273 GAGAGTAGACCCATCGGCATT 59.311 52.381 0.00 0.00 0.00 3.56
6855 7324 1.689273 AGAGTAGACCCATCGGCATTC 59.311 52.381 0.00 0.00 0.00 2.67
6856 7325 1.412710 GAGTAGACCCATCGGCATTCA 59.587 52.381 0.00 0.00 0.00 2.57
6857 7326 1.414181 AGTAGACCCATCGGCATTCAG 59.586 52.381 0.00 0.00 0.00 3.02
6858 7327 0.106708 TAGACCCATCGGCATTCAGC 59.893 55.000 0.00 0.00 44.65 4.26
6874 7343 7.350110 GCATTCAGCAAAGATCTATAGTCTC 57.650 40.000 0.00 0.00 44.79 3.36
6875 7344 6.368516 GCATTCAGCAAAGATCTATAGTCTCC 59.631 42.308 0.00 0.00 44.79 3.71
6876 7345 7.669427 CATTCAGCAAAGATCTATAGTCTCCT 58.331 38.462 0.00 0.00 0.00 3.69
6877 7346 7.667575 TTCAGCAAAGATCTATAGTCTCCTT 57.332 36.000 0.00 0.00 0.00 3.36
6878 7347 7.667575 TCAGCAAAGATCTATAGTCTCCTTT 57.332 36.000 0.00 3.32 0.00 3.11
6879 7348 8.083828 TCAGCAAAGATCTATAGTCTCCTTTT 57.916 34.615 0.00 0.00 0.00 2.27
6880 7349 8.200792 TCAGCAAAGATCTATAGTCTCCTTTTC 58.799 37.037 0.00 1.41 0.00 2.29
6881 7350 7.440856 CAGCAAAGATCTATAGTCTCCTTTTCC 59.559 40.741 0.00 1.07 0.00 3.13
6882 7351 7.346960 AGCAAAGATCTATAGTCTCCTTTTCCT 59.653 37.037 0.00 2.86 0.00 3.36
6883 7352 7.990314 GCAAAGATCTATAGTCTCCTTTTCCTT 59.010 37.037 0.00 0.00 0.00 3.36
6884 7353 9.898152 CAAAGATCTATAGTCTCCTTTTCCTTT 57.102 33.333 0.00 0.00 0.00 3.11
6886 7355 9.500701 AAGATCTATAGTCTCCTTTTCCTTTCT 57.499 33.333 0.00 0.00 0.00 2.52
6891 7360 7.987750 ATAGTCTCCTTTTCCTTTCTTTCAC 57.012 36.000 0.00 0.00 0.00 3.18
6903 7372 0.603569 TCTTTCACTGAGACGAGGCC 59.396 55.000 0.00 0.00 0.00 5.19
6933 7402 0.524862 CTCCATGTCAGCTTTGCACC 59.475 55.000 0.00 0.00 0.00 5.01
6948 7417 2.668550 ACCGCACGGCCTCTTTTC 60.669 61.111 9.43 0.00 39.32 2.29
6952 7421 2.041115 GCACGGCCTCTTTTCCCTC 61.041 63.158 0.00 0.00 0.00 4.30
6954 7423 2.125106 CGGCCTCTTTTCCCTCGG 60.125 66.667 0.00 0.00 0.00 4.63
6955 7424 2.438614 GGCCTCTTTTCCCTCGGC 60.439 66.667 0.00 0.00 39.98 5.54
6965 7434 0.461339 TTCCCTCGGCGTAATGAAGC 60.461 55.000 6.85 0.00 0.00 3.86
6974 7443 1.226295 GTAATGAAGCCGTTGCCGC 60.226 57.895 0.00 0.00 38.69 6.53
6989 7458 2.480555 CGCTTGCCAATCACGTCC 59.519 61.111 0.00 0.00 0.00 4.79
6990 7459 2.034879 CGCTTGCCAATCACGTCCT 61.035 57.895 0.00 0.00 0.00 3.85
6991 7460 1.796796 GCTTGCCAATCACGTCCTC 59.203 57.895 0.00 0.00 0.00 3.71
7009 7502 0.735471 TCGTGAGGCGAGAATGAGAG 59.265 55.000 0.00 0.00 45.68 3.20
7025 7518 2.071778 AGAGTGAGATCTCTCCTGCC 57.928 55.000 22.95 9.40 40.28 4.85
7026 7519 1.039856 GAGTGAGATCTCTCCTGCCC 58.960 60.000 22.95 4.76 42.20 5.36
7044 7537 1.153208 CCTCACTCATCAGCTGCCC 60.153 63.158 9.47 0.00 0.00 5.36
7076 7577 1.597199 GCGTGCTCTGATCATTGCATG 60.597 52.381 25.44 25.44 43.07 4.06
7095 7596 0.741927 GTTTGCATGATGCTTGGGCC 60.742 55.000 19.19 0.00 45.31 5.80
7096 7597 2.228389 TTTGCATGATGCTTGGGCCG 62.228 55.000 19.19 0.00 45.31 6.13
7097 7598 3.908081 GCATGATGCTTGGGCCGG 61.908 66.667 10.72 0.00 40.96 6.13
7098 7599 3.908081 CATGATGCTTGGGCCGGC 61.908 66.667 21.18 21.18 37.74 6.13
7117 7618 4.217159 GGCCACCCCGCGTAGTAG 62.217 72.222 4.92 0.00 0.00 2.57
7118 7619 4.217159 GCCACCCCGCGTAGTAGG 62.217 72.222 4.92 7.49 0.00 3.18
7119 7620 2.440796 CCACCCCGCGTAGTAGGA 60.441 66.667 4.92 0.00 0.00 2.94
7120 7621 2.487532 CCACCCCGCGTAGTAGGAG 61.488 68.421 4.92 0.00 0.00 3.69
7121 7622 1.751927 CACCCCGCGTAGTAGGAGT 60.752 63.158 4.92 0.00 0.00 3.85
7122 7623 0.464373 CACCCCGCGTAGTAGGAGTA 60.464 60.000 4.92 0.00 0.00 2.59
7123 7624 0.464554 ACCCCGCGTAGTAGGAGTAC 60.465 60.000 4.92 0.00 0.00 2.73
7124 7625 1.502163 CCCCGCGTAGTAGGAGTACG 61.502 65.000 4.92 9.05 46.95 3.67
7125 7626 0.811616 CCCGCGTAGTAGGAGTACGT 60.812 60.000 4.92 0.00 46.20 3.57
7126 7627 1.538204 CCCGCGTAGTAGGAGTACGTA 60.538 57.143 4.92 0.00 46.20 3.57
7127 7628 1.523095 CCGCGTAGTAGGAGTACGTAC 59.477 57.143 18.10 18.10 46.20 3.67
7128 7629 2.464865 CGCGTAGTAGGAGTACGTACT 58.535 52.381 27.71 27.71 46.20 2.73
7129 7630 3.550233 CCGCGTAGTAGGAGTACGTACTA 60.550 52.174 27.44 10.38 46.20 1.82
7171 7672 5.240844 ACTGTAGTACCTTTGGCATCAAAAC 59.759 40.000 0.00 0.00 41.70 2.43
7182 7685 2.812011 GGCATCAAAACTTGAGTACGGT 59.188 45.455 0.00 0.00 43.98 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.305928 CTCGTCCCTGTGAGAGATCAT 58.694 52.381 0.00 0.00 34.04 2.45
19 20 2.182858 ATTCCCTGGTCCTCGTCCCT 62.183 60.000 0.00 0.00 0.00 4.20
30 31 5.510861 CGTATAACCTCCTTACATTCCCTGG 60.511 48.000 0.00 0.00 0.00 4.45
38 39 3.133362 CCTTGCCGTATAACCTCCTTACA 59.867 47.826 0.00 0.00 0.00 2.41
42 43 1.761198 GTCCTTGCCGTATAACCTCCT 59.239 52.381 0.00 0.00 0.00 3.69
98 99 5.114785 TGCTAAAGTCGCAATGCTAAAAA 57.885 34.783 2.94 0.00 33.87 1.94
99 100 4.757799 TGCTAAAGTCGCAATGCTAAAA 57.242 36.364 2.94 0.00 33.87 1.52
385 386 5.728741 AGTCCCCTTGTCTATTTCTCTCAAT 59.271 40.000 0.00 0.00 0.00 2.57
406 407 7.988737 TGTTGATGTTGAATTGATGGATAGTC 58.011 34.615 0.00 0.00 0.00 2.59
408 409 7.993101 ACTGTTGATGTTGAATTGATGGATAG 58.007 34.615 0.00 0.00 0.00 2.08
513 558 5.750352 AACTAGGTCCCAAGTTCGATTTA 57.250 39.130 0.00 0.00 30.08 1.40
514 559 4.635699 AACTAGGTCCCAAGTTCGATTT 57.364 40.909 0.00 0.00 30.08 2.17
517 562 3.771216 ACTAACTAGGTCCCAAGTTCGA 58.229 45.455 9.88 0.00 37.19 3.71
518 563 4.532314 AACTAACTAGGTCCCAAGTTCG 57.468 45.455 9.88 7.37 37.19 3.95
519 564 6.293698 TCAAAACTAACTAGGTCCCAAGTTC 58.706 40.000 9.88 0.00 37.19 3.01
773 820 8.507524 AAGTTACCAATAATGCTCCTAAGAAC 57.492 34.615 0.00 0.00 0.00 3.01
914 961 5.604010 ATCGTGAGCAGAAAGAGAAAAAG 57.396 39.130 0.00 0.00 0.00 2.27
938 985 7.333528 TGGTGCAAAATATTAAGGATCTCAC 57.666 36.000 0.00 0.00 0.00 3.51
944 991 7.041107 GCAAGAATGGTGCAAAATATTAAGGA 58.959 34.615 0.00 0.00 41.80 3.36
963 1010 6.711277 ACTTGTTACCAGATCTATGCAAGAA 58.289 36.000 21.05 8.33 37.89 2.52
1061 1108 2.103263 CTGGTAGGAGTAGCATTGGGTC 59.897 54.545 0.00 0.00 36.09 4.46
1063 1110 1.417890 CCTGGTAGGAGTAGCATTGGG 59.582 57.143 0.00 0.00 37.67 4.12
1067 1114 4.140663 AGGATAACCTGGTAGGAGTAGCAT 60.141 45.833 0.00 0.00 45.92 3.79
1118 1165 8.585881 CAAAGCTCTAACCTATATAACTGGCTA 58.414 37.037 0.00 0.00 0.00 3.93
1125 1172 9.991906 ATAAACGCAAAGCTCTAACCTATATAA 57.008 29.630 0.00 0.00 0.00 0.98
1146 1195 8.184192 CCTCATTTGTAGACATTCCACATAAAC 58.816 37.037 0.00 0.00 0.00 2.01
1205 1388 6.566079 ACAAATTGAGAGGAGACCATATCA 57.434 37.500 0.00 0.00 0.00 2.15
1242 1425 8.917088 CCTCATATGGTCCATCTTTTTGTATTT 58.083 33.333 7.92 0.00 0.00 1.40
1243 1426 7.506938 CCCTCATATGGTCCATCTTTTTGTATT 59.493 37.037 7.92 0.00 0.00 1.89
1393 1576 5.402398 TGTGTGACACATAGAGATTCGAAG 58.598 41.667 15.39 0.00 39.62 3.79
1636 1819 7.781056 ACCAATTACCATTATGCACCTTTTAG 58.219 34.615 0.00 0.00 0.00 1.85
1655 1838 5.205056 TGAAACTCCACCTGTTTACCAATT 58.795 37.500 0.00 0.00 37.70 2.32
1656 1839 4.798882 TGAAACTCCACCTGTTTACCAAT 58.201 39.130 0.00 0.00 37.70 3.16
1657 1840 4.237976 TGAAACTCCACCTGTTTACCAA 57.762 40.909 0.00 0.00 37.70 3.67
1658 1841 3.935818 TGAAACTCCACCTGTTTACCA 57.064 42.857 0.00 0.00 37.70 3.25
1659 1842 4.142038 ACATGAAACTCCACCTGTTTACC 58.858 43.478 0.00 0.00 37.70 2.85
1660 1843 4.819630 TGACATGAAACTCCACCTGTTTAC 59.180 41.667 0.00 0.00 37.70 2.01
1661 1844 4.819630 GTGACATGAAACTCCACCTGTTTA 59.180 41.667 0.00 0.00 37.70 2.01
1774 1957 4.497291 TCTGGAACCCGCACTATTATTT 57.503 40.909 0.00 0.00 0.00 1.40
2160 2343 4.873746 TTTGCTCAAGTACTCACTAGCT 57.126 40.909 15.45 0.00 37.30 3.32
2444 2630 5.470845 AACATAAGACGCTTATGTCAAGC 57.529 39.130 28.91 0.00 42.78 4.01
2657 2843 6.441093 TGGCACAATCTTATGTTCTCATTC 57.559 37.500 0.00 0.00 33.07 2.67
2713 2899 3.811497 CAGAGCAGTGACATGAACTTTGA 59.189 43.478 0.00 0.00 0.00 2.69
2725 2911 7.971722 GGTTACTTTTTAAAAACAGAGCAGTGA 59.028 33.333 9.31 0.00 0.00 3.41
2746 2932 4.142966 GGCTAAACACGTCATCTTGGTTAC 60.143 45.833 0.00 0.00 0.00 2.50
2747 2933 3.998341 GGCTAAACACGTCATCTTGGTTA 59.002 43.478 0.00 0.00 0.00 2.85
2751 2939 3.436704 ACATGGCTAAACACGTCATCTTG 59.563 43.478 0.00 0.00 0.00 3.02
2989 3181 6.198650 TGACCACAGAAGCATATTCAAATG 57.801 37.500 0.00 0.00 0.00 2.32
3001 3193 4.036852 GGGAAGTTTCTTTGACCACAGAAG 59.963 45.833 0.00 0.00 0.00 2.85
3103 3295 8.260818 TGTCCTGAGAGAATAATTCAAACTAGG 58.739 37.037 0.00 0.00 0.00 3.02
3124 3316 3.521126 ACAATAGTCATTCAGCCTGTCCT 59.479 43.478 0.00 0.00 0.00 3.85
3159 3351 5.730568 GCATAGCCAAGGAAATAACAAGTCG 60.731 44.000 0.00 0.00 0.00 4.18
3189 3381 3.392616 ACTCCAGCTATCAGGGTAAATGG 59.607 47.826 0.00 0.00 0.00 3.16
3221 3413 5.756195 TCAAAGAAGTGACAGGAAACATG 57.244 39.130 0.00 0.00 0.00 3.21
3330 3523 5.753921 CGAGAAGTTCCGGAGCTATAAATTT 59.246 40.000 22.11 3.43 0.00 1.82
3528 3721 3.685139 TCTTAGGAAGCAGTTGACCAG 57.315 47.619 0.00 0.00 0.00 4.00
3553 3746 9.653287 CAGAATTCAGGTAACATACTAAGTCAA 57.347 33.333 8.44 0.00 41.41 3.18
3554 3747 8.258007 CCAGAATTCAGGTAACATACTAAGTCA 58.742 37.037 8.44 0.00 41.41 3.41
3602 3795 4.469657 AGGTGAGGCAGTTATGTTCAAAA 58.530 39.130 0.00 0.00 0.00 2.44
3603 3796 4.072131 GAGGTGAGGCAGTTATGTTCAAA 58.928 43.478 0.00 0.00 0.00 2.69
3604 3797 3.327757 AGAGGTGAGGCAGTTATGTTCAA 59.672 43.478 0.00 0.00 0.00 2.69
3617 3810 8.865090 ACTAATTCAAGATATGTAGAGGTGAGG 58.135 37.037 0.00 0.00 0.00 3.86
3628 3821 9.855361 CGAGCAGTAAAACTAATTCAAGATATG 57.145 33.333 0.00 0.00 0.00 1.78
3648 3841 2.031516 CAGCCAGGAACACGAGCAG 61.032 63.158 0.00 0.00 0.00 4.24
3656 3849 3.878778 ACAGATGAATACAGCCAGGAAC 58.121 45.455 0.00 0.00 32.31 3.62
3683 3876 2.086869 ACACATGTGTAATGGCTCTGC 58.913 47.619 29.66 0.00 42.90 4.26
3816 4009 2.069273 CCAGAATTCGTCAGCGTTTCT 58.931 47.619 0.00 0.00 39.89 2.52
3822 4015 1.064654 GGAATGCCAGAATTCGTCAGC 59.935 52.381 0.00 2.71 37.42 4.26
3936 4129 1.260544 GGCTGTCAGGGCAAAGAATT 58.739 50.000 1.14 0.00 0.00 2.17
3939 4132 1.073722 CTGGCTGTCAGGGCAAAGA 59.926 57.895 0.16 0.00 41.12 2.52
3981 4174 3.055719 CGTTCAACCAGGCCGCAT 61.056 61.111 0.00 0.00 0.00 4.73
4088 4281 7.821595 TTGAGTTTACCATTACGTATGTCAG 57.178 36.000 0.00 0.00 31.99 3.51
4100 4293 5.418840 GTGACATTGGGATTGAGTTTACCAT 59.581 40.000 0.00 0.00 0.00 3.55
4251 4444 3.660501 ACAGCTTCGATGTACTTGACA 57.339 42.857 0.00 0.00 43.97 3.58
4281 4474 2.765699 GGGGATGTATTGTGCCATTGTT 59.234 45.455 0.00 0.00 0.00 2.83
4732 4925 9.177608 CAGGTATTATGTTCAGAAAAATGAGGA 57.822 33.333 0.00 0.00 0.00 3.71
4815 5008 6.811170 GCCAGTTTCCGAAATTTGATTCATAA 59.189 34.615 0.00 0.00 0.00 1.90
4824 5017 1.963515 AGCTGCCAGTTTCCGAAATTT 59.036 42.857 0.00 0.00 0.00 1.82
4827 5020 0.108585 AGAGCTGCCAGTTTCCGAAA 59.891 50.000 0.00 0.00 0.00 3.46
4917 5218 2.621517 ATCCCTTGCTAGCAGCCTGC 62.622 60.000 18.45 9.13 45.46 4.85
4946 5248 7.225538 AGCTCTTGACAAATATGTACATGTAGC 59.774 37.037 18.81 13.72 40.74 3.58
5226 5531 2.499289 CTCCCAGAAGAGCACATAGTGT 59.501 50.000 0.00 0.00 35.75 3.55
5609 5918 6.257630 GTCTACAGATGATCTTCCTTTTCAGC 59.742 42.308 5.04 0.00 0.00 4.26
5629 5938 5.345202 GCTACACAATGCATATACGGTCTAC 59.655 44.000 0.00 0.00 0.00 2.59
5637 5946 6.820335 ACTTCAGAGCTACACAATGCATATA 58.180 36.000 0.00 0.00 0.00 0.86
5638 5947 5.678583 ACTTCAGAGCTACACAATGCATAT 58.321 37.500 0.00 0.00 0.00 1.78
5743 6052 1.342174 CAGGCAAGCTTTCCATGTTGT 59.658 47.619 17.76 0.00 0.00 3.32
5744 6053 1.337447 CCAGGCAAGCTTTCCATGTTG 60.337 52.381 17.76 6.52 0.00 3.33
5745 6054 0.971386 CCAGGCAAGCTTTCCATGTT 59.029 50.000 17.76 0.00 0.00 2.71
5746 6055 0.112995 TCCAGGCAAGCTTTCCATGT 59.887 50.000 17.76 0.00 0.00 3.21
5770 6079 5.885230 TTGTTTCTGTGCAATAGATCAGG 57.115 39.130 3.05 0.00 32.71 3.86
5795 6106 3.587061 TGAGTTCTAGCCAAGGATTTCCA 59.413 43.478 0.00 0.00 38.89 3.53
5852 6163 1.839424 AAACATACAAGGGAGCTGCC 58.161 50.000 18.04 18.04 0.00 4.85
5869 6183 3.763097 TCGTTTCTCGCTACGGATAAA 57.237 42.857 0.00 0.00 38.26 1.40
5875 6189 1.978697 CCGTTCGTTTCTCGCTACG 59.021 57.895 0.00 0.00 42.31 3.51
5877 6191 0.455633 GAGCCGTTCGTTTCTCGCTA 60.456 55.000 0.00 0.00 39.67 4.26
5892 6206 4.223964 GCGCGAAATGACCGAGCC 62.224 66.667 12.10 0.00 44.78 4.70
5908 6222 2.960819 AGTTCAGATTAGTCGGTGTGC 58.039 47.619 0.00 0.00 0.00 4.57
5939 6256 2.361737 GGCCCTCCCTGCAAAGAC 60.362 66.667 0.00 0.00 0.00 3.01
5965 6283 0.391661 TCAGACCGGAGATTTGCAGC 60.392 55.000 9.46 0.00 0.00 5.25
5971 6289 0.103208 GCACGATCAGACCGGAGATT 59.897 55.000 9.46 0.00 0.00 2.40
6043 6361 6.231211 ACAAGTAGTGGTAGTTCTCCAAATG 58.769 40.000 0.00 0.00 36.68 2.32
6066 6385 7.534239 GGCAATAATACAAGAAAGCGCTATAAC 59.466 37.037 12.05 2.32 0.00 1.89
6084 6403 3.373830 TGCTTTAGGGCTTGGCAATAAT 58.626 40.909 0.00 0.00 0.00 1.28
6090 6409 1.135721 CATTCTGCTTTAGGGCTTGGC 59.864 52.381 0.00 0.00 0.00 4.52
6289 6754 2.334946 CCCAGTTGGCGTGACATGG 61.335 63.158 0.00 0.00 0.00 3.66
6330 6795 1.081175 GGCGGCACAAAAGAAGCTC 60.081 57.895 3.07 0.00 0.00 4.09
6433 6898 2.922503 TGGCCTTGGACAGAGCGA 60.923 61.111 3.32 0.00 0.00 4.93
6434 6899 2.743928 GTGGCCTTGGACAGAGCG 60.744 66.667 3.32 0.00 0.00 5.03
6435 6900 0.823356 TTTGTGGCCTTGGACAGAGC 60.823 55.000 3.32 0.00 0.00 4.09
6438 6903 1.402787 AAGTTTGTGGCCTTGGACAG 58.597 50.000 3.32 0.00 0.00 3.51
6508 6973 2.328099 GCAACCGGCAGAGGAAGTG 61.328 63.158 0.00 0.00 43.97 3.16
6522 6987 1.025113 GGTCTTAGCCCGGAAGCAAC 61.025 60.000 0.73 0.00 34.23 4.17
6556 7025 3.257393 CTCATTTGTTCAGGGACTCTCG 58.743 50.000 0.00 0.00 34.60 4.04
6580 7049 5.688807 ACATTTATTCATGGACAGAGGGAG 58.311 41.667 0.00 0.00 0.00 4.30
6581 7050 5.715439 ACATTTATTCATGGACAGAGGGA 57.285 39.130 0.00 0.00 0.00 4.20
6582 7051 6.595682 AGTACATTTATTCATGGACAGAGGG 58.404 40.000 0.00 0.00 40.15 4.30
6583 7052 7.989741 AGAAGTACATTTATTCATGGACAGAGG 59.010 37.037 0.00 0.00 40.15 3.69
6584 7053 8.954950 AGAAGTACATTTATTCATGGACAGAG 57.045 34.615 0.00 0.00 40.15 3.35
6586 7055 8.768955 GCTAGAAGTACATTTATTCATGGACAG 58.231 37.037 0.00 0.00 40.15 3.51
6587 7056 8.486210 AGCTAGAAGTACATTTATTCATGGACA 58.514 33.333 0.00 0.00 40.15 4.02
6588 7057 8.894768 AGCTAGAAGTACATTTATTCATGGAC 57.105 34.615 0.00 0.00 38.18 4.02
6589 7058 9.905713 AAAGCTAGAAGTACATTTATTCATGGA 57.094 29.630 0.00 0.00 0.00 3.41
6599 7068 9.780186 ACTTAAGACAAAAGCTAGAAGTACATT 57.220 29.630 10.09 0.00 0.00 2.71
6600 7069 9.780186 AACTTAAGACAAAAGCTAGAAGTACAT 57.220 29.630 10.09 0.00 0.00 2.29
6642 7111 9.733556 TGCTACTTTTTCCTATAAAGTTGATCA 57.266 29.630 11.96 0.00 41.69 2.92
6644 7113 8.678199 GCTGCTACTTTTTCCTATAAAGTTGAT 58.322 33.333 11.96 0.00 41.69 2.57
6645 7114 7.663905 TGCTGCTACTTTTTCCTATAAAGTTGA 59.336 33.333 11.96 0.00 41.69 3.18
6646 7115 7.816640 TGCTGCTACTTTTTCCTATAAAGTTG 58.183 34.615 0.00 6.06 41.69 3.16
6647 7116 7.996098 TGCTGCTACTTTTTCCTATAAAGTT 57.004 32.000 0.00 0.00 41.69 2.66
6648 7117 8.581253 AATGCTGCTACTTTTTCCTATAAAGT 57.419 30.769 0.00 0.00 45.19 2.66
6652 7121 9.845740 TCATAAATGCTGCTACTTTTTCCTATA 57.154 29.630 0.00 0.00 0.00 1.31
6653 7122 8.624776 GTCATAAATGCTGCTACTTTTTCCTAT 58.375 33.333 0.00 0.00 0.00 2.57
6654 7123 7.609918 TGTCATAAATGCTGCTACTTTTTCCTA 59.390 33.333 0.00 0.00 0.00 2.94
6655 7124 6.434028 TGTCATAAATGCTGCTACTTTTTCCT 59.566 34.615 0.00 0.00 0.00 3.36
6656 7125 6.528072 GTGTCATAAATGCTGCTACTTTTTCC 59.472 38.462 0.00 0.00 0.00 3.13
6657 7126 7.308435 AGTGTCATAAATGCTGCTACTTTTTC 58.692 34.615 0.00 0.00 0.00 2.29
6658 7127 7.219484 AGTGTCATAAATGCTGCTACTTTTT 57.781 32.000 0.00 0.00 0.00 1.94
6659 7128 6.824305 AGTGTCATAAATGCTGCTACTTTT 57.176 33.333 0.00 0.00 0.00 2.27
6660 7129 7.921786 TTAGTGTCATAAATGCTGCTACTTT 57.078 32.000 0.00 1.23 0.00 2.66
6661 7130 7.921786 TTTAGTGTCATAAATGCTGCTACTT 57.078 32.000 0.00 0.00 0.00 2.24
6662 7131 8.511604 AATTTAGTGTCATAAATGCTGCTACT 57.488 30.769 0.00 0.00 35.91 2.57
6663 7132 9.869844 CTAATTTAGTGTCATAAATGCTGCTAC 57.130 33.333 0.00 0.00 35.91 3.58
6664 7133 9.613428 ACTAATTTAGTGTCATAAATGCTGCTA 57.387 29.630 8.27 0.00 37.69 3.49
6665 7134 8.511604 ACTAATTTAGTGTCATAAATGCTGCT 57.488 30.769 8.27 0.00 37.69 4.24
6666 7135 9.573133 AAACTAATTTAGTGTCATAAATGCTGC 57.427 29.630 9.78 0.00 39.39 5.25
6689 7158 8.782533 ACAATTCAAAACGAATCTAGTGAAAC 57.217 30.769 0.00 0.00 43.83 2.78
6781 7250 9.361315 GCCTTTGTTCTAAGTCAAAGTTTTAAA 57.639 29.630 13.84 0.00 44.91 1.52
6782 7251 8.745590 AGCCTTTGTTCTAAGTCAAAGTTTTAA 58.254 29.630 13.84 0.00 44.91 1.52
6783 7252 8.288689 AGCCTTTGTTCTAAGTCAAAGTTTTA 57.711 30.769 13.84 0.00 44.91 1.52
6784 7253 7.170393 AGCCTTTGTTCTAAGTCAAAGTTTT 57.830 32.000 13.84 0.83 44.91 2.43
6785 7254 6.775594 AGCCTTTGTTCTAAGTCAAAGTTT 57.224 33.333 13.84 0.00 44.91 2.66
6786 7255 7.280356 TCTAGCCTTTGTTCTAAGTCAAAGTT 58.720 34.615 13.84 6.88 44.91 2.66
6787 7256 6.827727 TCTAGCCTTTGTTCTAAGTCAAAGT 58.172 36.000 13.84 2.88 44.91 2.66
6788 7257 7.442666 ACTTCTAGCCTTTGTTCTAAGTCAAAG 59.557 37.037 9.70 9.70 45.53 2.77
6789 7258 7.280356 ACTTCTAGCCTTTGTTCTAAGTCAAA 58.720 34.615 0.00 0.00 33.44 2.69
6790 7259 6.827727 ACTTCTAGCCTTTGTTCTAAGTCAA 58.172 36.000 0.00 0.00 0.00 3.18
6791 7260 6.420913 ACTTCTAGCCTTTGTTCTAAGTCA 57.579 37.500 0.00 0.00 0.00 3.41
6792 7261 7.328982 GTGTACTTCTAGCCTTTGTTCTAAGTC 59.671 40.741 0.00 0.00 0.00 3.01
6793 7262 7.015389 AGTGTACTTCTAGCCTTTGTTCTAAGT 59.985 37.037 0.00 0.00 0.00 2.24
6794 7263 7.379750 AGTGTACTTCTAGCCTTTGTTCTAAG 58.620 38.462 0.00 0.00 0.00 2.18
6795 7264 7.299246 AGTGTACTTCTAGCCTTTGTTCTAA 57.701 36.000 0.00 0.00 0.00 2.10
6796 7265 6.912951 AGTGTACTTCTAGCCTTTGTTCTA 57.087 37.500 0.00 0.00 0.00 2.10
6797 7266 5.810080 AGTGTACTTCTAGCCTTTGTTCT 57.190 39.130 0.00 0.00 0.00 3.01
6798 7267 8.549338 AATAAGTGTACTTCTAGCCTTTGTTC 57.451 34.615 0.00 0.00 37.40 3.18
6799 7268 7.331193 CGAATAAGTGTACTTCTAGCCTTTGTT 59.669 37.037 0.00 0.00 37.40 2.83
6800 7269 6.812160 CGAATAAGTGTACTTCTAGCCTTTGT 59.188 38.462 0.00 0.00 37.40 2.83
6801 7270 6.237861 GCGAATAAGTGTACTTCTAGCCTTTG 60.238 42.308 0.00 0.00 37.40 2.77
6802 7271 5.811100 GCGAATAAGTGTACTTCTAGCCTTT 59.189 40.000 0.00 0.00 37.40 3.11
6803 7272 5.349809 GCGAATAAGTGTACTTCTAGCCTT 58.650 41.667 0.00 0.00 37.40 4.35
6804 7273 4.497674 CGCGAATAAGTGTACTTCTAGCCT 60.498 45.833 0.00 0.00 37.40 4.58
6805 7274 3.729716 CGCGAATAAGTGTACTTCTAGCC 59.270 47.826 0.00 0.00 37.40 3.93
6806 7275 3.729716 CCGCGAATAAGTGTACTTCTAGC 59.270 47.826 8.23 3.15 37.40 3.42
6807 7276 5.165911 TCCGCGAATAAGTGTACTTCTAG 57.834 43.478 8.23 0.00 37.40 2.43
6808 7277 4.036027 CCTCCGCGAATAAGTGTACTTCTA 59.964 45.833 8.23 0.00 37.40 2.10
6809 7278 3.181489 CCTCCGCGAATAAGTGTACTTCT 60.181 47.826 8.23 0.00 37.40 2.85
6810 7279 3.114065 CCTCCGCGAATAAGTGTACTTC 58.886 50.000 8.23 0.00 37.40 3.01
6811 7280 2.159142 CCCTCCGCGAATAAGTGTACTT 60.159 50.000 8.23 2.51 39.85 2.24
6812 7281 1.407979 CCCTCCGCGAATAAGTGTACT 59.592 52.381 8.23 0.00 0.00 2.73
6813 7282 1.406539 TCCCTCCGCGAATAAGTGTAC 59.593 52.381 8.23 0.00 0.00 2.90
6814 7283 1.679680 CTCCCTCCGCGAATAAGTGTA 59.320 52.381 8.23 0.00 0.00 2.90
6815 7284 0.460311 CTCCCTCCGCGAATAAGTGT 59.540 55.000 8.23 0.00 0.00 3.55
6816 7285 0.744874 TCTCCCTCCGCGAATAAGTG 59.255 55.000 8.23 0.00 0.00 3.16
6817 7286 1.033574 CTCTCCCTCCGCGAATAAGT 58.966 55.000 8.23 0.00 0.00 2.24
6818 7287 1.268352 CTCTCTCCCTCCGCGAATAAG 59.732 57.143 8.23 0.00 0.00 1.73
6819 7288 1.319541 CTCTCTCCCTCCGCGAATAA 58.680 55.000 8.23 0.00 0.00 1.40
6820 7289 0.183014 ACTCTCTCCCTCCGCGAATA 59.817 55.000 8.23 0.00 0.00 1.75
6821 7290 0.183014 TACTCTCTCCCTCCGCGAAT 59.817 55.000 8.23 0.00 0.00 3.34
6822 7291 0.464013 CTACTCTCTCCCTCCGCGAA 60.464 60.000 8.23 0.00 0.00 4.70
6823 7292 1.146485 CTACTCTCTCCCTCCGCGA 59.854 63.158 8.23 0.00 0.00 5.87
6824 7293 1.146485 TCTACTCTCTCCCTCCGCG 59.854 63.158 0.00 0.00 0.00 6.46
6825 7294 0.820482 GGTCTACTCTCTCCCTCCGC 60.820 65.000 0.00 0.00 0.00 5.54
6826 7295 0.179012 GGGTCTACTCTCTCCCTCCG 60.179 65.000 0.00 0.00 37.18 4.63
6827 7296 0.927767 TGGGTCTACTCTCTCCCTCC 59.072 60.000 0.00 0.00 40.48 4.30
6828 7297 2.812613 CGATGGGTCTACTCTCTCCCTC 60.813 59.091 0.00 0.00 40.48 4.30
6829 7298 1.144093 CGATGGGTCTACTCTCTCCCT 59.856 57.143 0.00 0.00 40.48 4.20
6830 7299 1.611519 CGATGGGTCTACTCTCTCCC 58.388 60.000 0.00 0.00 40.26 4.30
6831 7300 1.611519 CCGATGGGTCTACTCTCTCC 58.388 60.000 0.00 0.00 0.00 3.71
6832 7301 0.955905 GCCGATGGGTCTACTCTCTC 59.044 60.000 0.00 0.00 34.97 3.20
6833 7302 0.259065 TGCCGATGGGTCTACTCTCT 59.741 55.000 0.00 0.00 34.97 3.10
6834 7303 1.333177 ATGCCGATGGGTCTACTCTC 58.667 55.000 0.00 0.00 34.97 3.20
6835 7304 1.689273 GAATGCCGATGGGTCTACTCT 59.311 52.381 0.00 0.00 34.97 3.24
6836 7305 1.412710 TGAATGCCGATGGGTCTACTC 59.587 52.381 0.00 0.00 34.97 2.59
6837 7306 1.414181 CTGAATGCCGATGGGTCTACT 59.586 52.381 0.00 0.00 34.97 2.57
6838 7307 1.871080 CTGAATGCCGATGGGTCTAC 58.129 55.000 0.00 0.00 34.97 2.59
6839 7308 0.106708 GCTGAATGCCGATGGGTCTA 59.893 55.000 0.00 0.00 35.15 2.59
6840 7309 1.153086 GCTGAATGCCGATGGGTCT 60.153 57.895 0.00 0.00 35.15 3.85
6841 7310 1.031571 TTGCTGAATGCCGATGGGTC 61.032 55.000 0.00 0.00 42.00 4.46
6842 7311 0.611618 TTTGCTGAATGCCGATGGGT 60.612 50.000 0.00 0.00 42.00 4.51
6843 7312 0.101759 CTTTGCTGAATGCCGATGGG 59.898 55.000 0.00 0.00 42.00 4.00
6844 7313 1.097232 TCTTTGCTGAATGCCGATGG 58.903 50.000 0.00 0.00 42.00 3.51
6845 7314 2.617308 AGATCTTTGCTGAATGCCGATG 59.383 45.455 0.00 0.00 42.00 3.84
6846 7315 2.928334 AGATCTTTGCTGAATGCCGAT 58.072 42.857 0.00 0.00 42.00 4.18
6847 7316 2.408271 AGATCTTTGCTGAATGCCGA 57.592 45.000 0.00 0.00 42.00 5.54
6848 7317 4.993584 ACTATAGATCTTTGCTGAATGCCG 59.006 41.667 6.78 0.00 42.00 5.69
6849 7318 6.229733 AGACTATAGATCTTTGCTGAATGCC 58.770 40.000 6.78 0.00 42.00 4.40
6850 7319 6.368516 GGAGACTATAGATCTTTGCTGAATGC 59.631 42.308 6.78 0.00 43.25 3.56
6851 7320 7.669427 AGGAGACTATAGATCTTTGCTGAATG 58.331 38.462 6.78 0.00 40.61 2.67
6852 7321 7.854166 AGGAGACTATAGATCTTTGCTGAAT 57.146 36.000 6.78 0.00 40.61 2.57
6853 7322 7.667575 AAGGAGACTATAGATCTTTGCTGAA 57.332 36.000 6.78 0.00 42.68 3.02
6854 7323 7.667575 AAAGGAGACTATAGATCTTTGCTGA 57.332 36.000 6.78 0.00 42.68 4.26
6855 7324 7.440856 GGAAAAGGAGACTATAGATCTTTGCTG 59.559 40.741 6.78 0.00 42.68 4.41
6856 7325 7.346960 AGGAAAAGGAGACTATAGATCTTTGCT 59.653 37.037 6.78 8.95 42.68 3.91
6857 7326 7.505258 AGGAAAAGGAGACTATAGATCTTTGC 58.495 38.462 6.78 8.52 42.68 3.68
6858 7327 9.898152 AAAGGAAAAGGAGACTATAGATCTTTG 57.102 33.333 6.78 0.00 42.68 2.77
6860 7329 9.500701 AGAAAGGAAAAGGAGACTATAGATCTT 57.499 33.333 6.78 0.00 42.68 2.40
6861 7330 9.500701 AAGAAAGGAAAAGGAGACTATAGATCT 57.499 33.333 6.78 0.00 42.68 2.75
6864 7333 9.101325 TGAAAGAAAGGAAAAGGAGACTATAGA 57.899 33.333 6.78 0.00 42.68 1.98
6865 7334 9.157104 GTGAAAGAAAGGAAAAGGAGACTATAG 57.843 37.037 0.00 0.00 42.68 1.31
6866 7335 8.881262 AGTGAAAGAAAGGAAAAGGAGACTATA 58.119 33.333 0.00 0.00 42.68 1.31
6867 7336 7.663493 CAGTGAAAGAAAGGAAAAGGAGACTAT 59.337 37.037 0.00 0.00 42.68 2.12
6868 7337 6.992715 CAGTGAAAGAAAGGAAAAGGAGACTA 59.007 38.462 0.00 0.00 42.68 2.59
6870 7339 5.823045 TCAGTGAAAGAAAGGAAAAGGAGAC 59.177 40.000 0.00 0.00 0.00 3.36
6871 7340 6.001449 TCAGTGAAAGAAAGGAAAAGGAGA 57.999 37.500 0.00 0.00 0.00 3.71
6872 7341 6.017523 GTCTCAGTGAAAGAAAGGAAAAGGAG 60.018 42.308 0.00 0.00 0.00 3.69
6873 7342 5.823045 GTCTCAGTGAAAGAAAGGAAAAGGA 59.177 40.000 0.00 0.00 0.00 3.36
6874 7343 5.277538 CGTCTCAGTGAAAGAAAGGAAAAGG 60.278 44.000 0.00 0.00 0.00 3.11
6875 7344 5.523916 TCGTCTCAGTGAAAGAAAGGAAAAG 59.476 40.000 0.00 0.00 0.00 2.27
6876 7345 5.424757 TCGTCTCAGTGAAAGAAAGGAAAA 58.575 37.500 0.00 0.00 0.00 2.29
6877 7346 5.018539 TCGTCTCAGTGAAAGAAAGGAAA 57.981 39.130 0.00 0.00 0.00 3.13
6878 7347 4.501571 CCTCGTCTCAGTGAAAGAAAGGAA 60.502 45.833 0.00 0.00 33.07 3.36
6879 7348 3.005897 CCTCGTCTCAGTGAAAGAAAGGA 59.994 47.826 0.00 0.00 33.07 3.36
6880 7349 3.321497 CCTCGTCTCAGTGAAAGAAAGG 58.679 50.000 0.00 0.00 0.00 3.11
6881 7350 2.734079 GCCTCGTCTCAGTGAAAGAAAG 59.266 50.000 0.00 0.00 0.00 2.62
6882 7351 2.548067 GGCCTCGTCTCAGTGAAAGAAA 60.548 50.000 0.00 0.00 0.00 2.52
6883 7352 1.000955 GGCCTCGTCTCAGTGAAAGAA 59.999 52.381 0.00 0.00 0.00 2.52
6884 7353 0.603569 GGCCTCGTCTCAGTGAAAGA 59.396 55.000 0.00 0.00 0.00 2.52
6885 7354 0.734253 CGGCCTCGTCTCAGTGAAAG 60.734 60.000 0.00 0.00 0.00 2.62
6886 7355 1.289066 CGGCCTCGTCTCAGTGAAA 59.711 57.895 0.00 0.00 0.00 2.69
6933 7402 3.431725 GGGAAAAGAGGCCGTGCG 61.432 66.667 0.00 0.00 0.00 5.34
6941 7410 1.933853 CATTACGCCGAGGGAAAAGAG 59.066 52.381 0.00 0.00 0.00 2.85
6948 7417 1.887707 GGCTTCATTACGCCGAGGG 60.888 63.158 0.00 0.00 36.45 4.30
6954 7423 1.226295 GGCAACGGCTTCATTACGC 60.226 57.895 0.00 0.00 40.87 4.42
6974 7443 2.081526 CGAGGACGTGATTGGCAAG 58.918 57.895 5.96 0.00 34.56 4.01
6991 7460 0.453793 ACTCTCATTCTCGCCTCACG 59.546 55.000 0.00 0.00 45.62 4.35
6993 7462 1.747924 CTCACTCTCATTCTCGCCTCA 59.252 52.381 0.00 0.00 0.00 3.86
7009 7502 0.398381 AGGGGCAGGAGAGATCTCAC 60.398 60.000 24.39 17.90 44.60 3.51
7023 7516 1.153208 CAGCTGATGAGTGAGGGGC 60.153 63.158 8.42 0.00 0.00 5.80
7024 7517 1.153208 GCAGCTGATGAGTGAGGGG 60.153 63.158 20.43 0.00 0.00 4.79
7025 7518 1.153208 GGCAGCTGATGAGTGAGGG 60.153 63.158 20.43 0.00 0.00 4.30
7026 7519 1.153208 GGGCAGCTGATGAGTGAGG 60.153 63.158 20.43 0.00 0.00 3.86
7048 7541 3.561213 CAGAGCACGCATCGGCAG 61.561 66.667 0.00 0.00 41.24 4.85
7052 7545 1.070776 CAATGATCAGAGCACGCATCG 60.071 52.381 0.09 0.00 0.00 3.84
7139 7640 8.365060 TGCCAAAGGTACTACAGTAAATAGTA 57.635 34.615 0.00 0.00 38.49 1.82
7140 7641 7.248743 TGCCAAAGGTACTACAGTAAATAGT 57.751 36.000 0.00 0.00 38.49 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.