Multiple sequence alignment - TraesCS2A01G113600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G113600 chr2A 100.000 3368 0 0 1 3368 65172744 65176111 0.000000e+00 6220.0
1 TraesCS2A01G113600 chr2A 89.351 770 55 14 1864 2621 369215502 369216256 0.000000e+00 942.0
2 TraesCS2A01G113600 chr2A 83.490 745 110 9 2624 3368 369216299 369217030 0.000000e+00 682.0
3 TraesCS2A01G113600 chr2A 85.851 417 37 9 1435 1835 369215008 369215418 1.120000e-114 424.0
4 TraesCS2A01G113600 chr2A 93.694 222 14 0 1125 1346 369214637 369214858 1.940000e-87 333.0
5 TraesCS2A01G113600 chr2A 88.670 203 12 6 937 1139 369204547 369204738 1.560000e-58 237.0
6 TraesCS2A01G113600 chr2A 87.879 198 13 5 735 931 369201562 369201375 4.370000e-54 222.0
7 TraesCS2A01G113600 chr2A 96.226 53 2 0 196 248 628054477 628054529 1.660000e-13 87.9
8 TraesCS2A01G113600 chr2D 94.463 1517 72 7 1852 3368 63555317 63556821 0.000000e+00 2326.0
9 TraesCS2A01G113600 chr2D 92.879 646 24 7 809 1438 63554212 63554851 0.000000e+00 918.0
10 TraesCS2A01G113600 chr2D 92.170 613 33 6 735 1346 296708856 296709454 0.000000e+00 852.0
11 TraesCS2A01G113600 chr2D 94.336 512 29 0 1864 2375 296710292 296710803 0.000000e+00 785.0
12 TraesCS2A01G113600 chr2D 91.746 315 15 2 1435 1745 63554913 63555220 8.640000e-116 427.0
13 TraesCS2A01G113600 chr2D 87.261 314 31 8 1435 1748 296709630 296709934 1.920000e-92 350.0
14 TraesCS2A01G113600 chr2D 98.266 173 3 0 1 173 545700137 545700309 1.520000e-78 303.0
15 TraesCS2A01G113600 chr2D 96.685 181 6 0 1 181 517422916 517422736 5.460000e-78 302.0
16 TraesCS2A01G113600 chr2D 87.879 99 7 4 1742 1835 296710110 296710208 9.880000e-21 111.0
17 TraesCS2A01G113600 chr2D 100.000 28 0 0 1808 1835 63555217 63555244 6.000000e-03 52.8
18 TraesCS2A01G113600 chr2B 90.375 613 30 8 735 1346 364949858 364949274 0.000000e+00 778.0
19 TraesCS2A01G113600 chr2B 83.832 736 102 12 2627 3360 364928689 364927969 0.000000e+00 684.0
20 TraesCS2A01G113600 chr2B 95.213 376 18 0 2091 2466 364948364 364947989 2.240000e-166 595.0
21 TraesCS2A01G113600 chr2B 86.988 415 35 9 1435 1835 364949021 364948612 1.840000e-122 449.0
22 TraesCS2A01G113600 chr2B 93.642 173 11 0 1864 2036 364948528 364948356 3.330000e-65 259.0
23 TraesCS2A01G113600 chr2B 88.172 93 11 0 2534 2626 364928822 364928730 9.880000e-21 111.0
24 TraesCS2A01G113600 chr2B 96.875 32 1 0 565 596 23971714 23971683 2.000000e-03 54.7
25 TraesCS2A01G113600 chr4D 97.740 177 4 0 1 177 355881632 355881456 4.220000e-79 305.0
26 TraesCS2A01G113600 chr4D 96.685 181 6 0 1 181 132806236 132806056 5.460000e-78 302.0
27 TraesCS2A01G113600 chr7D 98.266 173 3 0 1 173 206928010 206928182 1.520000e-78 303.0
28 TraesCS2A01G113600 chr7D 90.187 214 17 3 249 460 527466960 527466749 3.310000e-70 276.0
29 TraesCS2A01G113600 chr7D 96.875 32 1 0 565 596 66817357 66817326 2.000000e-03 54.7
30 TraesCS2A01G113600 chr1D 97.207 179 5 0 1 179 55284898 55284720 1.520000e-78 303.0
31 TraesCS2A01G113600 chr5D 96.175 183 7 0 1 183 444596270 444596088 1.960000e-77 300.0
32 TraesCS2A01G113600 chr5D 95.187 187 9 0 1 187 461525356 461525542 2.540000e-76 296.0
33 TraesCS2A01G113600 chr5D 82.209 163 28 1 2788 2950 526000192 526000031 4.530000e-29 139.0
34 TraesCS2A01G113600 chr6A 94.764 191 10 0 1 191 204097563 204097753 7.060000e-77 298.0
35 TraesCS2A01G113600 chr6A 92.308 78 6 0 3283 3360 112606717 112606640 9.880000e-21 111.0
36 TraesCS2A01G113600 chr6D 90.610 213 14 5 250 460 13275139 13274931 9.200000e-71 278.0
37 TraesCS2A01G113600 chr6D 89.202 213 20 3 251 461 348080621 348080832 2.580000e-66 263.0
38 TraesCS2A01G113600 chr3D 90.566 212 16 3 251 460 70280644 70280435 9.200000e-71 278.0
39 TraesCS2A01G113600 chr3D 90.141 213 18 3 251 462 587551082 587551292 1.190000e-69 274.0
40 TraesCS2A01G113600 chr3D 89.202 213 19 3 251 461 484804115 484803905 2.580000e-66 263.0
41 TraesCS2A01G113600 chr3D 89.252 214 18 4 251 462 587550444 587550654 2.580000e-66 263.0
42 TraesCS2A01G113600 chr3D 100.000 32 0 0 565 596 84568503 84568534 3.630000e-05 60.2
43 TraesCS2A01G113600 chr5B 89.151 212 19 3 251 460 526918836 526919045 9.270000e-66 261.0
44 TraesCS2A01G113600 chr5B 82.123 179 27 3 2739 2916 660752186 660752012 7.530000e-32 148.0
45 TraesCS2A01G113600 chr3A 89.151 212 20 3 250 460 647757119 647756910 9.270000e-66 261.0
46 TraesCS2A01G113600 chrUn 93.827 81 5 0 640 720 298931631 298931711 4.560000e-24 122.0
47 TraesCS2A01G113600 chrUn 93.827 81 5 0 640 720 307358834 307358754 4.560000e-24 122.0
48 TraesCS2A01G113600 chrUn 90.278 72 7 0 177 248 298931511 298931582 9.950000e-16 95.3
49 TraesCS2A01G113600 chrUn 91.304 69 6 0 180 248 307358951 307358883 9.950000e-16 95.3
50 TraesCS2A01G113600 chrUn 100.000 29 0 0 565 593 353681602 353681630 2.000000e-03 54.7
51 TraesCS2A01G113600 chrUn 100.000 29 0 0 565 593 357027513 357027541 2.000000e-03 54.7
52 TraesCS2A01G113600 chr3B 93.827 81 5 0 640 720 6235820 6235900 4.560000e-24 122.0
53 TraesCS2A01G113600 chr3B 90.278 72 7 0 177 248 6235700 6235771 9.950000e-16 95.3
54 TraesCS2A01G113600 chr4A 91.860 86 6 1 640 724 617588640 617588725 5.900000e-23 119.0
55 TraesCS2A01G113600 chr4A 100.000 29 0 0 565 593 688324428 688324456 2.000000e-03 54.7
56 TraesCS2A01G113600 chr1B 100.000 29 0 0 565 593 73316483 73316511 2.000000e-03 54.7
57 TraesCS2A01G113600 chr1B 100.000 29 0 0 565 593 73317800 73317828 2.000000e-03 54.7
58 TraesCS2A01G113600 chr1B 100.000 29 0 0 565 593 73364120 73364148 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G113600 chr2A 65172744 65176111 3367 False 6220.00 6220 100.0000 1 3368 1 chr2A.!!$F1 3367
1 TraesCS2A01G113600 chr2A 369214637 369217030 2393 False 595.25 942 88.0965 1125 3368 4 chr2A.!!$F4 2243
2 TraesCS2A01G113600 chr2D 63554212 63556821 2609 False 930.95 2326 94.7720 809 3368 4 chr2D.!!$F2 2559
3 TraesCS2A01G113600 chr2D 296708856 296710803 1947 False 524.50 852 90.4115 735 2375 4 chr2D.!!$F3 1640
4 TraesCS2A01G113600 chr2B 364947989 364949858 1869 True 520.25 778 91.5545 735 2466 4 chr2B.!!$R3 1731
5 TraesCS2A01G113600 chr2B 364927969 364928822 853 True 397.50 684 86.0020 2534 3360 2 chr2B.!!$R2 826
6 TraesCS2A01G113600 chr3D 587550444 587551292 848 False 268.50 274 89.6965 251 462 2 chr3D.!!$F2 211

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.035739 GGCTCGAACCTGGGTAAACA 59.964 55.0 0.0 0.0 0.0 2.83 F
102 103 0.037046 GTAAACATCGTGTCCCCCGT 60.037 55.0 0.0 0.0 0.0 5.28 F
112 113 0.042131 TGTCCCCCGTCTCCTGTTAT 59.958 55.0 0.0 0.0 0.0 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2593 1.132657 TGGGTAGAGGAGGTTGGTTGA 60.133 52.381 0.00 0.00 0.00 3.18 R
2043 2616 1.148273 AACGGCAAAGAGGAGCACA 59.852 52.632 0.00 0.00 0.00 4.57 R
2474 3052 3.753797 TGAGATGAGATTAGGGACGATCG 59.246 47.826 14.88 14.88 32.54 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.784994 ACTCATATTCATCAAGATCAATCAAGC 58.215 33.333 0.00 0.00 0.00 4.01
41 42 8.685838 TCATATTCATCAAGATCAATCAAGCA 57.314 30.769 0.00 0.00 0.00 3.91
42 43 8.784043 TCATATTCATCAAGATCAATCAAGCAG 58.216 33.333 0.00 0.00 0.00 4.24
43 44 5.830000 TTCATCAAGATCAATCAAGCAGG 57.170 39.130 0.00 0.00 0.00 4.85
44 45 5.106876 TCATCAAGATCAATCAAGCAGGA 57.893 39.130 0.00 0.00 0.00 3.86
45 46 5.503002 TCATCAAGATCAATCAAGCAGGAA 58.497 37.500 0.00 0.00 0.00 3.36
46 47 5.589050 TCATCAAGATCAATCAAGCAGGAAG 59.411 40.000 0.00 0.00 0.00 3.46
47 48 4.914983 TCAAGATCAATCAAGCAGGAAGT 58.085 39.130 0.00 0.00 0.00 3.01
48 49 6.053632 TCAAGATCAATCAAGCAGGAAGTA 57.946 37.500 0.00 0.00 0.00 2.24
49 50 6.111382 TCAAGATCAATCAAGCAGGAAGTAG 58.889 40.000 0.00 0.00 0.00 2.57
50 51 5.033589 AGATCAATCAAGCAGGAAGTAGG 57.966 43.478 0.00 0.00 0.00 3.18
51 52 3.634397 TCAATCAAGCAGGAAGTAGGG 57.366 47.619 0.00 0.00 0.00 3.53
52 53 2.912956 TCAATCAAGCAGGAAGTAGGGT 59.087 45.455 0.00 0.00 0.00 4.34
53 54 4.101114 TCAATCAAGCAGGAAGTAGGGTA 58.899 43.478 0.00 0.00 0.00 3.69
54 55 4.721776 TCAATCAAGCAGGAAGTAGGGTAT 59.278 41.667 0.00 0.00 0.00 2.73
55 56 5.191722 TCAATCAAGCAGGAAGTAGGGTATT 59.808 40.000 0.00 0.00 0.00 1.89
56 57 6.385759 TCAATCAAGCAGGAAGTAGGGTATTA 59.614 38.462 0.00 0.00 0.00 0.98
57 58 5.609533 TCAAGCAGGAAGTAGGGTATTAC 57.390 43.478 0.00 0.00 0.00 1.89
58 59 4.407945 TCAAGCAGGAAGTAGGGTATTACC 59.592 45.833 4.11 4.11 37.60 2.85
59 60 4.282292 AGCAGGAAGTAGGGTATTACCT 57.718 45.455 12.54 2.07 44.75 3.08
60 61 4.224762 AGCAGGAAGTAGGGTATTACCTC 58.775 47.826 12.54 2.11 42.09 3.85
61 62 3.324268 GCAGGAAGTAGGGTATTACCTCC 59.676 52.174 12.54 10.66 42.09 4.30
62 63 4.553678 CAGGAAGTAGGGTATTACCTCCA 58.446 47.826 16.39 0.80 42.09 3.86
63 64 5.155905 CAGGAAGTAGGGTATTACCTCCAT 58.844 45.833 16.39 4.17 42.09 3.41
64 65 6.320518 CAGGAAGTAGGGTATTACCTCCATA 58.679 44.000 16.39 3.42 42.09 2.74
65 66 6.437793 CAGGAAGTAGGGTATTACCTCCATAG 59.562 46.154 16.39 6.09 42.09 2.23
66 67 6.337472 AGGAAGTAGGGTATTACCTCCATAGA 59.663 42.308 16.39 0.00 42.09 1.98
67 68 6.664384 GGAAGTAGGGTATTACCTCCATAGAG 59.336 46.154 12.54 0.00 42.09 2.43
68 69 7.417811 AAGTAGGGTATTACCTCCATAGAGA 57.582 40.000 12.54 0.00 43.39 3.10
69 70 7.034967 AGTAGGGTATTACCTCCATAGAGAG 57.965 44.000 12.54 0.00 43.39 3.20
76 77 3.735704 CTCCATAGAGAGGGCTCGA 57.264 57.895 0.00 0.00 45.98 4.04
77 78 1.988293 CTCCATAGAGAGGGCTCGAA 58.012 55.000 0.00 0.00 45.98 3.71
78 79 1.611491 CTCCATAGAGAGGGCTCGAAC 59.389 57.143 0.00 0.00 45.98 3.95
79 80 0.676736 CCATAGAGAGGGCTCGAACC 59.323 60.000 0.00 0.00 45.98 3.62
80 81 1.698506 CATAGAGAGGGCTCGAACCT 58.301 55.000 7.99 7.99 45.98 3.50
81 82 1.339610 CATAGAGAGGGCTCGAACCTG 59.660 57.143 12.67 0.00 45.98 4.00
82 83 0.395862 TAGAGAGGGCTCGAACCTGG 60.396 60.000 12.67 0.00 45.98 4.45
83 84 2.685380 AGAGGGCTCGAACCTGGG 60.685 66.667 12.67 0.00 38.79 4.45
84 85 3.003763 GAGGGCTCGAACCTGGGT 61.004 66.667 12.67 0.00 38.79 4.51
85 86 1.684734 GAGGGCTCGAACCTGGGTA 60.685 63.158 12.67 0.00 38.79 3.69
86 87 1.229400 AGGGCTCGAACCTGGGTAA 60.229 57.895 4.57 0.00 36.85 2.85
87 88 0.838987 AGGGCTCGAACCTGGGTAAA 60.839 55.000 4.57 0.00 36.85 2.01
88 89 0.675837 GGGCTCGAACCTGGGTAAAC 60.676 60.000 4.57 0.00 0.00 2.01
89 90 0.035739 GGCTCGAACCTGGGTAAACA 59.964 55.000 0.00 0.00 0.00 2.83
90 91 1.339727 GGCTCGAACCTGGGTAAACAT 60.340 52.381 0.00 0.00 0.00 2.71
91 92 2.007608 GCTCGAACCTGGGTAAACATC 58.992 52.381 0.00 0.00 0.00 3.06
92 93 2.268298 CTCGAACCTGGGTAAACATCG 58.732 52.381 0.00 4.90 0.00 3.84
93 94 1.619827 TCGAACCTGGGTAAACATCGT 59.380 47.619 0.00 0.00 0.00 3.73
94 95 1.730064 CGAACCTGGGTAAACATCGTG 59.270 52.381 0.00 0.00 0.00 4.35
95 96 2.774687 GAACCTGGGTAAACATCGTGT 58.225 47.619 0.00 0.00 0.00 4.49
96 97 2.467566 ACCTGGGTAAACATCGTGTC 57.532 50.000 0.00 0.00 0.00 3.67
97 98 1.002773 ACCTGGGTAAACATCGTGTCC 59.997 52.381 0.00 0.00 0.00 4.02
98 99 1.677820 CCTGGGTAAACATCGTGTCCC 60.678 57.143 0.00 0.00 35.85 4.46
99 100 0.325602 TGGGTAAACATCGTGTCCCC 59.674 55.000 9.39 10.06 34.88 4.81
100 101 0.393402 GGGTAAACATCGTGTCCCCC 60.393 60.000 0.00 0.00 30.72 5.40
101 102 0.741927 GGTAAACATCGTGTCCCCCG 60.742 60.000 0.00 0.00 0.00 5.73
102 103 0.037046 GTAAACATCGTGTCCCCCGT 60.037 55.000 0.00 0.00 0.00 5.28
103 104 0.247185 TAAACATCGTGTCCCCCGTC 59.753 55.000 0.00 0.00 0.00 4.79
104 105 1.477685 AAACATCGTGTCCCCCGTCT 61.478 55.000 0.00 0.00 0.00 4.18
105 106 1.885163 AACATCGTGTCCCCCGTCTC 61.885 60.000 0.00 0.00 0.00 3.36
106 107 2.758737 ATCGTGTCCCCCGTCTCC 60.759 66.667 0.00 0.00 0.00 3.71
107 108 3.298300 ATCGTGTCCCCCGTCTCCT 62.298 63.158 0.00 0.00 0.00 3.69
108 109 3.760035 CGTGTCCCCCGTCTCCTG 61.760 72.222 0.00 0.00 0.00 3.86
109 110 2.603776 GTGTCCCCCGTCTCCTGT 60.604 66.667 0.00 0.00 0.00 4.00
110 111 2.203182 TGTCCCCCGTCTCCTGTT 59.797 61.111 0.00 0.00 0.00 3.16
111 112 0.901580 GTGTCCCCCGTCTCCTGTTA 60.902 60.000 0.00 0.00 0.00 2.41
112 113 0.042131 TGTCCCCCGTCTCCTGTTAT 59.958 55.000 0.00 0.00 0.00 1.89
113 114 0.751452 GTCCCCCGTCTCCTGTTATC 59.249 60.000 0.00 0.00 0.00 1.75
114 115 0.337082 TCCCCCGTCTCCTGTTATCA 59.663 55.000 0.00 0.00 0.00 2.15
115 116 1.062428 TCCCCCGTCTCCTGTTATCAT 60.062 52.381 0.00 0.00 0.00 2.45
116 117 1.344763 CCCCCGTCTCCTGTTATCATC 59.655 57.143 0.00 0.00 0.00 2.92
117 118 1.000163 CCCCGTCTCCTGTTATCATCG 60.000 57.143 0.00 0.00 0.00 3.84
118 119 1.954382 CCCGTCTCCTGTTATCATCGA 59.046 52.381 0.00 0.00 0.00 3.59
119 120 2.558795 CCCGTCTCCTGTTATCATCGAT 59.441 50.000 0.00 0.00 0.00 3.59
120 121 3.005897 CCCGTCTCCTGTTATCATCGATT 59.994 47.826 0.00 0.00 0.00 3.34
121 122 4.230657 CCGTCTCCTGTTATCATCGATTC 58.769 47.826 0.00 0.00 0.00 2.52
122 123 4.022762 CCGTCTCCTGTTATCATCGATTCT 60.023 45.833 0.00 0.00 0.00 2.40
123 124 5.181433 CCGTCTCCTGTTATCATCGATTCTA 59.819 44.000 0.00 0.00 0.00 2.10
124 125 6.310960 CGTCTCCTGTTATCATCGATTCTAG 58.689 44.000 0.00 0.00 0.00 2.43
125 126 6.147985 CGTCTCCTGTTATCATCGATTCTAGA 59.852 42.308 0.00 0.00 0.00 2.43
126 127 7.302524 GTCTCCTGTTATCATCGATTCTAGAC 58.697 42.308 0.00 0.00 0.00 2.59
127 128 6.147985 TCTCCTGTTATCATCGATTCTAGACG 59.852 42.308 0.00 0.00 0.00 4.18
128 129 4.854291 CCTGTTATCATCGATTCTAGACGC 59.146 45.833 0.00 0.00 0.00 5.19
129 130 5.432885 TGTTATCATCGATTCTAGACGCA 57.567 39.130 0.00 0.00 0.00 5.24
130 131 6.013842 TGTTATCATCGATTCTAGACGCAT 57.986 37.500 0.00 0.00 0.00 4.73
131 132 7.141100 TGTTATCATCGATTCTAGACGCATA 57.859 36.000 0.00 0.00 0.00 3.14
132 133 7.244192 TGTTATCATCGATTCTAGACGCATAG 58.756 38.462 0.00 0.00 0.00 2.23
133 134 5.888691 ATCATCGATTCTAGACGCATAGT 57.111 39.130 0.00 0.00 0.00 2.12
134 135 5.690997 TCATCGATTCTAGACGCATAGTT 57.309 39.130 0.00 0.00 0.00 2.24
135 136 5.690816 TCATCGATTCTAGACGCATAGTTC 58.309 41.667 0.00 0.00 0.00 3.01
136 137 4.129878 TCGATTCTAGACGCATAGTTCG 57.870 45.455 0.00 12.17 34.16 3.95
137 138 3.059120 TCGATTCTAGACGCATAGTTCGG 60.059 47.826 15.42 5.32 33.91 4.30
138 139 3.566523 GATTCTAGACGCATAGTTCGGG 58.433 50.000 0.00 0.00 0.00 5.14
139 140 2.336945 TCTAGACGCATAGTTCGGGA 57.663 50.000 0.00 0.00 0.00 5.14
140 141 1.945394 TCTAGACGCATAGTTCGGGAC 59.055 52.381 0.00 0.00 0.00 4.46
141 142 1.001597 CTAGACGCATAGTTCGGGACC 60.002 57.143 0.00 0.00 0.00 4.46
142 143 1.227176 GACGCATAGTTCGGGACCC 60.227 63.158 0.00 0.00 0.00 4.46
143 144 2.108362 CGCATAGTTCGGGACCCC 59.892 66.667 4.46 0.00 0.00 4.95
144 145 2.509422 GCATAGTTCGGGACCCCC 59.491 66.667 4.46 0.00 41.09 5.40
145 146 2.070650 GCATAGTTCGGGACCCCCT 61.071 63.158 4.46 0.84 42.67 4.79
146 147 0.761702 GCATAGTTCGGGACCCCCTA 60.762 60.000 4.46 3.30 42.67 3.53
147 148 1.046204 CATAGTTCGGGACCCCCTAC 58.954 60.000 4.46 0.29 42.67 3.18
148 149 0.105298 ATAGTTCGGGACCCCCTACC 60.105 60.000 4.46 0.00 42.67 3.18
149 150 2.242408 TAGTTCGGGACCCCCTACCC 62.242 65.000 4.46 0.00 42.67 3.69
153 154 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
154 155 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
155 156 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
156 157 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
157 158 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
158 159 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
159 160 3.303928 CCCTACCCGAGATCCGCC 61.304 72.222 0.00 0.00 36.84 6.13
160 161 3.671411 CCTACCCGAGATCCGCCG 61.671 72.222 0.00 0.00 36.84 6.46
161 162 3.671411 CTACCCGAGATCCGCCGG 61.671 72.222 0.00 0.00 44.94 6.13
162 163 4.511246 TACCCGAGATCCGCCGGT 62.511 66.667 1.63 11.60 43.93 5.28
164 165 4.157120 CCCGAGATCCGCCGGTTT 62.157 66.667 1.63 0.00 43.93 3.27
165 166 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
166 167 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
167 168 1.447140 CGAGATCCGCCGGTTTTGA 60.447 57.895 1.63 0.00 0.00 2.69
168 169 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
169 170 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
170 171 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
171 172 1.918868 GATCCGCCGGTTTTGACACC 61.919 60.000 1.63 0.00 0.00 4.16
177 178 2.725641 GGTTTTGACACCGGCACC 59.274 61.111 0.00 0.00 0.00 5.01
178 179 2.330041 GTTTTGACACCGGCACCG 59.670 61.111 0.00 1.02 39.44 4.94
179 180 2.181521 GTTTTGACACCGGCACCGA 61.182 57.895 11.42 0.00 42.83 4.69
180 181 1.890041 TTTTGACACCGGCACCGAG 60.890 57.895 11.42 5.30 42.83 4.63
181 182 3.818121 TTTGACACCGGCACCGAGG 62.818 63.158 11.42 4.51 42.83 4.63
183 184 3.771160 GACACCGGCACCGAGGAT 61.771 66.667 11.42 0.00 42.83 3.24
184 185 3.310860 GACACCGGCACCGAGGATT 62.311 63.158 11.42 0.00 42.83 3.01
185 186 1.952102 GACACCGGCACCGAGGATTA 61.952 60.000 11.42 0.00 42.83 1.75
186 187 1.520787 CACCGGCACCGAGGATTAC 60.521 63.158 11.42 0.00 42.83 1.89
187 188 1.985662 ACCGGCACCGAGGATTACA 60.986 57.895 11.42 0.00 42.83 2.41
188 189 1.219664 CCGGCACCGAGGATTACAA 59.780 57.895 11.42 0.00 42.83 2.41
189 190 0.179056 CCGGCACCGAGGATTACAAT 60.179 55.000 11.42 0.00 42.83 2.71
190 191 0.937304 CGGCACCGAGGATTACAATG 59.063 55.000 2.01 0.00 42.83 2.82
191 192 1.308998 GGCACCGAGGATTACAATGG 58.691 55.000 0.00 0.00 0.00 3.16
192 193 0.663153 GCACCGAGGATTACAATGGC 59.337 55.000 0.00 0.00 0.00 4.40
193 194 2.016604 GCACCGAGGATTACAATGGCA 61.017 52.381 0.00 0.00 0.00 4.92
194 195 2.364632 CACCGAGGATTACAATGGCAA 58.635 47.619 0.00 0.00 0.00 4.52
195 196 2.355756 CACCGAGGATTACAATGGCAAG 59.644 50.000 0.00 0.00 0.00 4.01
196 197 1.334869 CCGAGGATTACAATGGCAAGC 59.665 52.381 0.00 0.00 0.00 4.01
197 198 1.003545 CGAGGATTACAATGGCAAGCG 60.004 52.381 0.00 0.00 0.00 4.68
198 199 0.740737 AGGATTACAATGGCAAGCGC 59.259 50.000 0.00 0.00 37.44 5.92
199 200 0.740737 GGATTACAATGGCAAGCGCT 59.259 50.000 2.64 2.64 38.60 5.92
200 201 1.946768 GGATTACAATGGCAAGCGCTA 59.053 47.619 12.05 0.00 38.60 4.26
201 202 2.357637 GGATTACAATGGCAAGCGCTAA 59.642 45.455 12.05 0.00 38.60 3.09
202 203 3.548818 GGATTACAATGGCAAGCGCTAAG 60.549 47.826 12.05 8.07 38.60 2.18
203 204 2.107950 TACAATGGCAAGCGCTAAGT 57.892 45.000 12.05 4.43 38.60 2.24
204 205 1.247567 ACAATGGCAAGCGCTAAGTT 58.752 45.000 12.05 0.00 38.60 2.66
205 206 1.200020 ACAATGGCAAGCGCTAAGTTC 59.800 47.619 12.05 4.45 38.60 3.01
206 207 1.199789 CAATGGCAAGCGCTAAGTTCA 59.800 47.619 12.05 10.04 38.60 3.18
207 208 1.755179 ATGGCAAGCGCTAAGTTCAT 58.245 45.000 12.05 11.82 38.60 2.57
208 209 0.804364 TGGCAAGCGCTAAGTTCATG 59.196 50.000 12.05 4.09 38.60 3.07
209 210 0.099436 GGCAAGCGCTAAGTTCATGG 59.901 55.000 12.05 0.00 38.60 3.66
210 211 1.086696 GCAAGCGCTAAGTTCATGGA 58.913 50.000 12.05 0.00 34.30 3.41
211 212 1.063174 GCAAGCGCTAAGTTCATGGAG 59.937 52.381 12.05 0.00 34.30 3.86
212 213 2.350522 CAAGCGCTAAGTTCATGGAGT 58.649 47.619 12.05 0.00 0.00 3.85
213 214 3.521560 CAAGCGCTAAGTTCATGGAGTA 58.478 45.455 12.05 0.00 0.00 2.59
214 215 3.887621 AGCGCTAAGTTCATGGAGTAA 57.112 42.857 8.99 0.00 0.00 2.24
215 216 4.202245 AGCGCTAAGTTCATGGAGTAAA 57.798 40.909 8.99 0.00 0.00 2.01
216 217 4.770795 AGCGCTAAGTTCATGGAGTAAAT 58.229 39.130 8.99 0.00 0.00 1.40
217 218 5.186198 AGCGCTAAGTTCATGGAGTAAATT 58.814 37.500 8.99 0.00 0.00 1.82
218 219 6.346096 AGCGCTAAGTTCATGGAGTAAATTA 58.654 36.000 8.99 0.00 0.00 1.40
219 220 6.821665 AGCGCTAAGTTCATGGAGTAAATTAA 59.178 34.615 8.99 0.00 0.00 1.40
220 221 7.011482 AGCGCTAAGTTCATGGAGTAAATTAAG 59.989 37.037 8.99 0.00 0.00 1.85
221 222 7.126398 CGCTAAGTTCATGGAGTAAATTAAGC 58.874 38.462 0.00 0.00 0.00 3.09
222 223 7.201609 CGCTAAGTTCATGGAGTAAATTAAGCA 60.202 37.037 0.00 0.00 0.00 3.91
223 224 8.458843 GCTAAGTTCATGGAGTAAATTAAGCAA 58.541 33.333 0.00 0.00 0.00 3.91
226 227 8.579850 AGTTCATGGAGTAAATTAAGCAATCA 57.420 30.769 0.00 0.00 0.00 2.57
227 228 8.680903 AGTTCATGGAGTAAATTAAGCAATCAG 58.319 33.333 0.00 0.00 0.00 2.90
228 229 7.572523 TCATGGAGTAAATTAAGCAATCAGG 57.427 36.000 0.00 0.00 0.00 3.86
229 230 5.835113 TGGAGTAAATTAAGCAATCAGGC 57.165 39.130 0.00 0.00 0.00 4.85
230 231 4.335315 TGGAGTAAATTAAGCAATCAGGCG 59.665 41.667 0.00 0.00 39.27 5.52
231 232 4.282873 GAGTAAATTAAGCAATCAGGCGC 58.717 43.478 0.00 0.00 39.27 6.53
232 233 3.947834 AGTAAATTAAGCAATCAGGCGCT 59.052 39.130 7.64 0.00 41.20 5.92
234 235 4.981806 AAATTAAGCAATCAGGCGCTTA 57.018 36.364 7.64 0.00 46.34 3.09
236 237 2.979814 TAAGCAATCAGGCGCTTAGA 57.020 45.000 7.64 3.05 46.34 2.10
237 238 1.661341 AAGCAATCAGGCGCTTAGAG 58.339 50.000 7.64 0.00 46.34 2.43
238 239 0.813210 AGCAATCAGGCGCTTAGAGC 60.813 55.000 7.64 0.00 39.27 4.09
239 240 1.091771 GCAATCAGGCGCTTAGAGCA 61.092 55.000 7.64 0.00 42.58 4.26
240 241 0.935898 CAATCAGGCGCTTAGAGCAG 59.064 55.000 7.64 1.86 42.58 4.24
241 242 0.179062 AATCAGGCGCTTAGAGCAGG 60.179 55.000 7.64 1.08 42.58 4.85
242 243 2.657102 ATCAGGCGCTTAGAGCAGGC 62.657 60.000 7.64 7.93 42.58 4.85
243 244 3.393970 AGGCGCTTAGAGCAGGCA 61.394 61.111 7.64 0.00 42.58 4.75
244 245 2.894387 GGCGCTTAGAGCAGGCAG 60.894 66.667 7.64 0.00 42.58 4.85
245 246 2.185350 GCGCTTAGAGCAGGCAGA 59.815 61.111 0.00 0.00 42.58 4.26
246 247 1.448540 GCGCTTAGAGCAGGCAGAA 60.449 57.895 0.00 0.00 42.58 3.02
247 248 1.021390 GCGCTTAGAGCAGGCAGAAA 61.021 55.000 0.00 0.00 42.58 2.52
248 249 1.442769 CGCTTAGAGCAGGCAGAAAA 58.557 50.000 0.50 0.00 42.58 2.29
249 250 1.806542 CGCTTAGAGCAGGCAGAAAAA 59.193 47.619 0.50 0.00 42.58 1.94
256 257 1.357079 AGCAGGCAGAAAAAGGATCCT 59.643 47.619 9.02 9.02 0.00 3.24
265 266 3.010584 AGAAAAAGGATCCTGCTTGCCTA 59.989 43.478 17.02 0.00 0.00 3.93
268 269 1.589414 AGGATCCTGCTTGCCTACTT 58.411 50.000 15.29 0.00 0.00 2.24
274 275 0.107459 CTGCTTGCCTACTTCCTCCC 60.107 60.000 0.00 0.00 0.00 4.30
279 280 1.149401 GCCTACTTCCTCCCCATGC 59.851 63.158 0.00 0.00 0.00 4.06
290 291 2.146724 CCCCATGCTCCCATCCGTA 61.147 63.158 0.00 0.00 0.00 4.02
296 297 2.857744 GCTCCCATCCGTACTCCCG 61.858 68.421 0.00 0.00 0.00 5.14
305 306 1.672854 CCGTACTCCCGCTTCATCCA 61.673 60.000 0.00 0.00 0.00 3.41
312 313 1.153449 CCGCTTCATCCAACGGCTA 60.153 57.895 0.00 0.00 39.08 3.93
372 374 2.159179 CCTGATTTTAAGGGGGTGGG 57.841 55.000 0.00 0.00 0.00 4.61
374 376 1.361197 CTGATTTTAAGGGGGTGGGGT 59.639 52.381 0.00 0.00 0.00 4.95
411 414 5.716228 TGTTCCAATCAAATCAAGCCAGTAT 59.284 36.000 0.00 0.00 0.00 2.12
413 416 5.263599 TCCAATCAAATCAAGCCAGTATGT 58.736 37.500 0.00 0.00 0.00 2.29
456 459 1.739562 GGTGAGCAGCCAAGTCTCG 60.740 63.158 0.00 0.00 0.00 4.04
462 465 3.303135 AGCCAAGTCTCGTCCGCA 61.303 61.111 0.00 0.00 0.00 5.69
463 466 2.811317 GCCAAGTCTCGTCCGCAG 60.811 66.667 0.00 0.00 0.00 5.18
464 467 2.962569 CCAAGTCTCGTCCGCAGA 59.037 61.111 0.00 0.00 0.00 4.26
465 468 1.289066 CCAAGTCTCGTCCGCAGAA 59.711 57.895 0.00 0.00 0.00 3.02
466 469 0.319555 CCAAGTCTCGTCCGCAGAAA 60.320 55.000 0.00 0.00 0.00 2.52
467 470 1.497991 CAAGTCTCGTCCGCAGAAAA 58.502 50.000 0.00 0.00 0.00 2.29
468 471 1.864711 CAAGTCTCGTCCGCAGAAAAA 59.135 47.619 0.00 0.00 0.00 1.94
469 472 2.457366 AGTCTCGTCCGCAGAAAAAT 57.543 45.000 0.00 0.00 0.00 1.82
470 473 3.587797 AGTCTCGTCCGCAGAAAAATA 57.412 42.857 0.00 0.00 0.00 1.40
471 474 3.512680 AGTCTCGTCCGCAGAAAAATAG 58.487 45.455 0.00 0.00 0.00 1.73
472 475 2.603560 GTCTCGTCCGCAGAAAAATAGG 59.396 50.000 0.00 0.00 0.00 2.57
473 476 1.327764 CTCGTCCGCAGAAAAATAGGC 59.672 52.381 0.00 0.00 0.00 3.93
474 477 1.083489 CGTCCGCAGAAAAATAGGCA 58.917 50.000 0.00 0.00 0.00 4.75
475 478 1.466950 CGTCCGCAGAAAAATAGGCAA 59.533 47.619 0.00 0.00 0.00 4.52
476 479 2.476185 CGTCCGCAGAAAAATAGGCAAG 60.476 50.000 0.00 0.00 0.00 4.01
477 480 1.472480 TCCGCAGAAAAATAGGCAAGC 59.528 47.619 0.00 0.00 0.00 4.01
478 481 1.538276 CGCAGAAAAATAGGCAAGCG 58.462 50.000 0.00 0.00 37.91 4.68
479 482 1.271876 GCAGAAAAATAGGCAAGCGC 58.728 50.000 0.00 0.00 37.44 5.92
480 483 1.135286 GCAGAAAAATAGGCAAGCGCT 60.135 47.619 2.64 2.64 38.60 5.92
481 484 2.672195 GCAGAAAAATAGGCAAGCGCTT 60.672 45.455 18.98 18.98 38.60 4.68
482 485 2.919229 CAGAAAAATAGGCAAGCGCTTG 59.081 45.455 39.20 39.20 43.14 4.01
483 486 2.819608 AGAAAAATAGGCAAGCGCTTGA 59.180 40.909 45.25 29.36 42.93 3.02
496 499 0.179215 CGCTTGACGCCTCATTTGAC 60.179 55.000 0.00 0.00 34.21 3.18
499 502 0.953471 TTGACGCCTCATTTGACCCG 60.953 55.000 0.00 0.00 0.00 5.28
504 507 0.393808 GCCTCATTTGACCCGGCTTA 60.394 55.000 0.00 0.00 37.76 3.09
505 508 1.750682 GCCTCATTTGACCCGGCTTAT 60.751 52.381 0.00 0.00 37.76 1.73
509 512 2.238646 TCATTTGACCCGGCTTATCTGT 59.761 45.455 0.00 0.00 0.00 3.41
511 514 2.871096 TTGACCCGGCTTATCTGTTT 57.129 45.000 0.00 0.00 0.00 2.83
516 519 1.486726 CCCGGCTTATCTGTTTCCTCT 59.513 52.381 0.00 0.00 0.00 3.69
522 525 3.563390 GCTTATCTGTTTCCTCTCCATGC 59.437 47.826 0.00 0.00 0.00 4.06
524 527 5.435291 CTTATCTGTTTCCTCTCCATGCTT 58.565 41.667 0.00 0.00 0.00 3.91
533 536 1.688735 CTCTCCATGCTTCCATCCGTA 59.311 52.381 0.00 0.00 0.00 4.02
536 539 1.837439 TCCATGCTTCCATCCGTACTT 59.163 47.619 0.00 0.00 0.00 2.24
537 540 2.238646 TCCATGCTTCCATCCGTACTTT 59.761 45.455 0.00 0.00 0.00 2.66
543 546 3.751698 GCTTCCATCCGTACTTTCACTTT 59.248 43.478 0.00 0.00 0.00 2.66
546 549 6.093633 GCTTCCATCCGTACTTTCACTTTATT 59.906 38.462 0.00 0.00 0.00 1.40
550 553 8.701895 TCCATCCGTACTTTCACTTTATTCTAT 58.298 33.333 0.00 0.00 0.00 1.98
555 558 7.254455 CCGTACTTTCACTTTATTCTATGGCTG 60.254 40.741 0.00 0.00 0.00 4.85
556 559 7.254455 CGTACTTTCACTTTATTCTATGGCTGG 60.254 40.741 0.00 0.00 0.00 4.85
557 560 6.485171 ACTTTCACTTTATTCTATGGCTGGT 58.515 36.000 0.00 0.00 0.00 4.00
596 669 2.847449 TCCCCTGATTTTAACGGGATGA 59.153 45.455 0.00 0.00 37.87 2.92
627 700 3.081993 GCGTAGGCAAAGTCTCGC 58.918 61.111 1.75 0.00 39.62 5.03
632 705 2.263540 GGCAAAGTCTCGCCCGTA 59.736 61.111 2.38 0.00 42.82 4.02
633 706 1.375013 GGCAAAGTCTCGCCCGTAA 60.375 57.895 2.38 0.00 42.82 3.18
634 707 0.952010 GGCAAAGTCTCGCCCGTAAA 60.952 55.000 2.38 0.00 42.82 2.01
635 708 1.084289 GCAAAGTCTCGCCCGTAAAT 58.916 50.000 0.00 0.00 0.00 1.40
636 709 1.062148 GCAAAGTCTCGCCCGTAAATC 59.938 52.381 0.00 0.00 0.00 2.17
637 710 2.618053 CAAAGTCTCGCCCGTAAATCT 58.382 47.619 0.00 0.00 0.00 2.40
638 711 3.777478 CAAAGTCTCGCCCGTAAATCTA 58.223 45.455 0.00 0.00 0.00 1.98
639 712 4.178540 CAAAGTCTCGCCCGTAAATCTAA 58.821 43.478 0.00 0.00 0.00 2.10
640 713 4.667519 AAGTCTCGCCCGTAAATCTAAT 57.332 40.909 0.00 0.00 0.00 1.73
641 714 4.240175 AGTCTCGCCCGTAAATCTAATC 57.760 45.455 0.00 0.00 0.00 1.75
642 715 3.635373 AGTCTCGCCCGTAAATCTAATCA 59.365 43.478 0.00 0.00 0.00 2.57
643 716 3.982058 GTCTCGCCCGTAAATCTAATCAG 59.018 47.826 0.00 0.00 0.00 2.90
644 717 3.005472 TCTCGCCCGTAAATCTAATCAGG 59.995 47.826 0.00 0.00 0.00 3.86
645 718 2.960384 TCGCCCGTAAATCTAATCAGGA 59.040 45.455 0.00 0.00 0.00 3.86
646 719 3.576982 TCGCCCGTAAATCTAATCAGGAT 59.423 43.478 0.00 0.00 0.00 3.24
647 720 4.039973 TCGCCCGTAAATCTAATCAGGATT 59.960 41.667 0.00 0.00 35.25 3.01
648 721 4.389077 CGCCCGTAAATCTAATCAGGATTC 59.611 45.833 0.00 0.00 32.96 2.52
649 722 5.305585 GCCCGTAAATCTAATCAGGATTCA 58.694 41.667 0.00 0.00 32.96 2.57
650 723 5.763204 GCCCGTAAATCTAATCAGGATTCAA 59.237 40.000 0.00 0.00 32.96 2.69
651 724 6.293462 GCCCGTAAATCTAATCAGGATTCAAC 60.293 42.308 0.00 0.00 32.96 3.18
652 725 6.073765 CCCGTAAATCTAATCAGGATTCAACG 60.074 42.308 0.00 12.79 39.44 4.10
653 726 6.700081 CCGTAAATCTAATCAGGATTCAACGA 59.300 38.462 17.52 0.00 40.62 3.85
654 727 7.223971 CCGTAAATCTAATCAGGATTCAACGAA 59.776 37.037 17.52 0.00 40.62 3.85
655 728 8.765219 CGTAAATCTAATCAGGATTCAACGAAT 58.235 33.333 13.75 0.00 40.62 3.34
660 733 9.838339 ATCTAATCAGGATTCAACGAATTAACT 57.162 29.630 0.00 0.00 31.89 2.24
661 734 9.098355 TCTAATCAGGATTCAACGAATTAACTG 57.902 33.333 0.00 9.10 31.89 3.16
662 735 5.545658 TCAGGATTCAACGAATTAACTGC 57.454 39.130 0.00 0.00 33.23 4.40
663 736 5.245531 TCAGGATTCAACGAATTAACTGCT 58.754 37.500 0.00 0.00 33.23 4.24
664 737 6.403049 TCAGGATTCAACGAATTAACTGCTA 58.597 36.000 0.00 0.00 33.23 3.49
665 738 6.876789 TCAGGATTCAACGAATTAACTGCTAA 59.123 34.615 0.00 0.00 33.23 3.09
666 739 7.552687 TCAGGATTCAACGAATTAACTGCTAAT 59.447 33.333 0.00 0.00 33.23 1.73
667 740 8.184192 CAGGATTCAACGAATTAACTGCTAATT 58.816 33.333 0.00 0.00 41.93 1.40
668 741 9.391006 AGGATTCAACGAATTAACTGCTAATTA 57.609 29.630 0.00 0.00 39.79 1.40
669 742 9.651718 GGATTCAACGAATTAACTGCTAATTAG 57.348 33.333 8.20 8.20 39.79 1.73
670 743 9.159470 GATTCAACGAATTAACTGCTAATTAGC 57.841 33.333 27.23 27.23 39.79 3.09
677 750 7.518370 CGAATTAACTGCTAATTAGCCGTGAAT 60.518 37.037 26.92 26.92 44.48 2.57
678 751 7.639945 AATTAACTGCTAATTAGCCGTGAATC 58.360 34.615 30.01 9.34 42.90 2.52
679 752 7.499232 AATTAACTGCTAATTAGCCGTGAATCT 59.501 33.333 30.01 21.57 42.90 2.40
684 757 6.410243 GCTAATTAGCCGTGAATCTAATCC 57.590 41.667 24.34 0.00 43.39 3.01
685 758 6.166982 GCTAATTAGCCGTGAATCTAATCCT 58.833 40.000 24.34 0.00 43.39 3.24
686 759 7.321153 GCTAATTAGCCGTGAATCTAATCCTA 58.679 38.462 24.34 0.00 43.39 2.94
687 760 7.489757 GCTAATTAGCCGTGAATCTAATCCTAG 59.510 40.741 24.34 0.00 43.39 3.02
688 761 3.669251 AGCCGTGAATCTAATCCTAGC 57.331 47.619 0.00 0.00 0.00 3.42
689 762 2.029828 AGCCGTGAATCTAATCCTAGCG 60.030 50.000 0.00 0.00 0.00 4.26
690 763 2.329379 CCGTGAATCTAATCCTAGCGC 58.671 52.381 0.00 0.00 0.00 5.92
691 764 2.029828 CCGTGAATCTAATCCTAGCGCT 60.030 50.000 17.26 17.26 0.00 5.92
692 765 3.238441 CGTGAATCTAATCCTAGCGCTC 58.762 50.000 16.34 0.00 0.00 5.03
693 766 3.238441 GTGAATCTAATCCTAGCGCTCG 58.762 50.000 16.34 7.87 0.00 5.03
694 767 2.885266 TGAATCTAATCCTAGCGCTCGT 59.115 45.455 16.34 0.00 0.00 4.18
695 768 3.318275 TGAATCTAATCCTAGCGCTCGTT 59.682 43.478 16.34 7.48 0.00 3.85
696 769 3.562567 ATCTAATCCTAGCGCTCGTTC 57.437 47.619 16.34 0.00 0.00 3.95
697 770 2.573369 TCTAATCCTAGCGCTCGTTCT 58.427 47.619 16.34 0.00 0.00 3.01
698 771 3.736720 TCTAATCCTAGCGCTCGTTCTA 58.263 45.455 16.34 0.19 0.00 2.10
699 772 4.132336 TCTAATCCTAGCGCTCGTTCTAA 58.868 43.478 16.34 0.00 0.00 2.10
700 773 3.357166 AATCCTAGCGCTCGTTCTAAG 57.643 47.619 16.34 3.03 0.00 2.18
701 774 0.381089 TCCTAGCGCTCGTTCTAAGC 59.619 55.000 16.34 0.00 36.38 3.09
706 779 3.255379 GCTCGTTCTAAGCGCCCG 61.255 66.667 2.29 0.00 0.00 6.13
707 780 3.255379 CTCGTTCTAAGCGCCCGC 61.255 66.667 2.29 4.20 42.33 6.13
721 794 2.047655 CCGCGTTGGACAAGCCTA 60.048 61.111 4.92 0.00 42.00 3.93
722 795 1.669760 CCGCGTTGGACAAGCCTAA 60.670 57.895 4.92 0.00 42.00 2.69
723 796 1.635663 CCGCGTTGGACAAGCCTAAG 61.636 60.000 4.92 0.00 42.00 2.18
724 797 1.502190 GCGTTGGACAAGCCTAAGC 59.498 57.895 0.00 0.00 39.24 3.09
725 798 1.923227 GCGTTGGACAAGCCTAAGCC 61.923 60.000 0.00 0.00 39.97 4.35
726 799 1.635663 CGTTGGACAAGCCTAAGCCG 61.636 60.000 0.00 0.00 41.25 5.52
727 800 1.674322 TTGGACAAGCCTAAGCCGC 60.674 57.895 0.00 0.00 41.25 6.53
728 801 2.046314 GGACAAGCCTAAGCCGCA 60.046 61.111 0.00 0.00 41.25 5.69
729 802 1.452108 GGACAAGCCTAAGCCGCAT 60.452 57.895 0.00 0.00 41.25 4.73
730 803 1.718757 GGACAAGCCTAAGCCGCATG 61.719 60.000 0.00 0.00 41.25 4.06
731 804 1.002134 ACAAGCCTAAGCCGCATGT 60.002 52.632 0.00 0.00 41.25 3.21
732 805 0.251916 ACAAGCCTAAGCCGCATGTA 59.748 50.000 0.00 0.00 41.25 2.29
733 806 0.657840 CAAGCCTAAGCCGCATGTAC 59.342 55.000 0.00 0.00 41.25 2.90
775 848 2.004017 AGAATTAATTCGCGCCGTTCA 58.996 42.857 19.86 0.00 41.56 3.18
780 853 0.519519 AATTCGCGCCGTTCATTTCA 59.480 45.000 0.00 0.00 0.00 2.69
784 857 1.355796 CGCGCCGTTCATTTCAGGTA 61.356 55.000 0.00 0.00 0.00 3.08
789 862 2.934553 GCCGTTCATTTCAGGTAGGTAC 59.065 50.000 0.00 0.00 0.00 3.34
797 870 3.695830 TTCAGGTAGGTACAGCAAAGG 57.304 47.619 0.00 0.00 0.00 3.11
798 871 1.278127 TCAGGTAGGTACAGCAAAGGC 59.722 52.381 0.00 0.00 41.61 4.35
839 913 2.104281 TCTCATGCATCCTCCATCACAG 59.896 50.000 0.00 0.00 0.00 3.66
893 967 2.745037 GGCAACCACCGTACCTGA 59.255 61.111 0.00 0.00 0.00 3.86
894 968 1.375523 GGCAACCACCGTACCTGAG 60.376 63.158 0.00 0.00 0.00 3.35
895 969 2.033194 GCAACCACCGTACCTGAGC 61.033 63.158 0.00 0.00 0.00 4.26
896 970 1.736645 CAACCACCGTACCTGAGCG 60.737 63.158 0.00 0.00 0.00 5.03
897 971 2.205152 AACCACCGTACCTGAGCGT 61.205 57.895 0.00 0.00 0.00 5.07
898 972 0.895100 AACCACCGTACCTGAGCGTA 60.895 55.000 0.00 0.00 0.00 4.42
947 1025 2.750888 GCAACGCAAGGGTCGATCC 61.751 63.158 6.61 6.61 46.39 3.36
948 1026 1.375396 CAACGCAAGGGTCGATCCA 60.375 57.895 19.03 0.00 46.39 3.41
949 1027 1.079127 AACGCAAGGGTCGATCCAG 60.079 57.895 19.03 10.29 46.39 3.86
950 1028 1.827399 AACGCAAGGGTCGATCCAGT 61.827 55.000 19.03 8.39 46.39 4.00
951 1029 1.079127 CGCAAGGGTCGATCCAGTT 60.079 57.895 19.03 0.00 38.11 3.16
955 1033 1.550524 CAAGGGTCGATCCAGTTCAGA 59.449 52.381 19.03 0.00 38.11 3.27
993 1080 1.202486 GGCCAAGTGGACGATCGATAA 60.202 52.381 24.34 2.98 37.39 1.75
1355 1448 7.313646 CGTGTCCTCGAGGTAATATTATGATT 58.686 38.462 30.17 0.00 36.34 2.57
1359 1452 9.360093 GTCCTCGAGGTAATATTATGATTCAAG 57.640 37.037 30.17 0.00 36.34 3.02
1415 1508 6.986817 TCTTTCTTCAAGACACTCGATCTTTT 59.013 34.615 0.00 0.00 36.51 2.27
1466 1767 6.128138 AGAACTGGTCTTTAATTAGGTGCT 57.872 37.500 0.00 0.00 29.66 4.40
1469 1770 4.263506 ACTGGTCTTTAATTAGGTGCTGCT 60.264 41.667 0.00 0.00 0.00 4.24
1476 1777 7.750903 GTCTTTAATTAGGTGCTGCTAAAAGTG 59.249 37.037 0.00 0.00 0.00 3.16
1507 1808 6.922247 TCATGTACTTCAACCGTGTTTTTA 57.078 33.333 0.00 0.00 0.00 1.52
1508 1809 7.317842 TCATGTACTTCAACCGTGTTTTTAA 57.682 32.000 0.00 0.00 0.00 1.52
1511 1812 4.374843 ACTTCAACCGTGTTTTTAACCC 57.625 40.909 0.00 0.00 0.00 4.11
1512 1813 3.762823 ACTTCAACCGTGTTTTTAACCCA 59.237 39.130 0.00 0.00 0.00 4.51
1551 1852 2.171635 GTGGGGTTCACATCTTCGC 58.828 57.895 0.00 0.00 45.39 4.70
1609 1910 4.220693 TCAGGTCAATCTATTGTGGTGG 57.779 45.455 2.80 0.00 38.84 4.61
1611 1912 1.670811 GGTCAATCTATTGTGGTGGCG 59.329 52.381 2.80 0.00 38.84 5.69
1615 1916 2.057137 ATCTATTGTGGTGGCGCATT 57.943 45.000 10.83 0.00 0.00 3.56
1734 2039 7.093771 GGGAAGCAAAATCAAGGAAGAGAAATA 60.094 37.037 0.00 0.00 0.00 1.40
1767 2262 7.411486 TTCAATGGTAGTTGAAACCTGAAAA 57.589 32.000 0.00 0.00 43.12 2.29
1768 2263 7.595819 TCAATGGTAGTTGAAACCTGAAAAT 57.404 32.000 0.00 0.00 37.91 1.82
1770 2265 8.792633 TCAATGGTAGTTGAAACCTGAAAATAG 58.207 33.333 0.00 0.00 37.91 1.73
1772 2267 7.739498 TGGTAGTTGAAACCTGAAAATAGAC 57.261 36.000 0.00 0.00 37.91 2.59
1773 2268 7.514721 TGGTAGTTGAAACCTGAAAATAGACT 58.485 34.615 0.00 0.00 37.91 3.24
1774 2269 8.653191 TGGTAGTTGAAACCTGAAAATAGACTA 58.347 33.333 0.00 0.00 37.91 2.59
1775 2270 9.498176 GGTAGTTGAAACCTGAAAATAGACTAA 57.502 33.333 0.00 0.00 33.97 2.24
2020 2593 0.886563 CGTCGAACTACCTGACCCTT 59.113 55.000 0.00 0.00 0.00 3.95
2043 2616 0.252742 CCAACCTCCTCTACCCAGGT 60.253 60.000 0.00 0.00 42.72 4.00
2124 2702 0.041238 TCAGGAAGGGAGGTGACGAT 59.959 55.000 0.00 0.00 0.00 3.73
2587 3177 4.668576 TGCAGAATGTTCGTTCTTCATC 57.331 40.909 4.74 0.00 36.33 2.92
2664 3294 0.037160 GGTTTTCCTCCCTTACGGCA 59.963 55.000 0.00 0.00 36.94 5.69
2665 3295 1.340697 GGTTTTCCTCCCTTACGGCAT 60.341 52.381 0.00 0.00 36.94 4.40
2731 3361 1.279271 CCACCGTCCAAAATCTCTCCT 59.721 52.381 0.00 0.00 0.00 3.69
2736 3366 4.141688 ACCGTCCAAAATCTCTCCTAATCC 60.142 45.833 0.00 0.00 0.00 3.01
2772 3402 4.891727 CCGCCGCGGCTGAGTAAT 62.892 66.667 43.60 0.00 41.17 1.89
2773 3403 2.027024 CGCCGCGGCTGAGTAATA 59.973 61.111 43.60 0.00 39.32 0.98
2774 3404 1.372997 CGCCGCGGCTGAGTAATAT 60.373 57.895 43.60 0.00 39.32 1.28
2775 3405 1.617755 CGCCGCGGCTGAGTAATATG 61.618 60.000 43.60 22.92 39.32 1.78
2776 3406 0.600255 GCCGCGGCTGAGTAATATGT 60.600 55.000 41.71 0.00 38.26 2.29
2808 3438 0.546747 TCTTTCTCCCACCATCCCGT 60.547 55.000 0.00 0.00 0.00 5.28
2936 3566 2.667536 CACTGGCTTGTCGCTGCT 60.668 61.111 0.00 0.00 39.13 4.24
2979 3609 0.513820 CGGCGCCGAAGAAAACTTTA 59.486 50.000 44.86 0.00 42.83 1.85
3014 3647 1.806542 CCACTGGGTTCAAACTCATCG 59.193 52.381 0.00 0.00 39.00 3.84
3026 3659 4.444838 TCATCGTCCAACCGCGGG 62.445 66.667 31.76 12.82 0.00 6.13
3079 3712 1.672356 ATGGCTTGTGTCGGAGTGC 60.672 57.895 0.00 0.00 0.00 4.40
3080 3713 2.280797 GGCTTGTGTCGGAGTGCA 60.281 61.111 0.00 0.00 0.00 4.57
3108 3741 2.292323 GGACACCGGGGATCTAGGATAT 60.292 54.545 12.96 0.00 0.00 1.63
3150 3783 0.251073 GGGGCTAAACGGCTAGTCAA 59.749 55.000 0.00 0.00 38.46 3.18
3164 3797 5.675538 GGCTAGTCAATCCACTATCAAAGT 58.324 41.667 0.00 0.00 39.81 2.66
3165 3798 6.116126 GGCTAGTCAATCCACTATCAAAGTT 58.884 40.000 0.00 0.00 35.76 2.66
3177 3810 7.942341 TCCACTATCAAAGTTACACAAGGAAAT 59.058 33.333 0.00 0.00 35.76 2.17
3189 3822 5.445964 ACACAAGGAAATAAGGACACAACT 58.554 37.500 0.00 0.00 0.00 3.16
3209 3842 7.709182 CACAACTGATTTTATATACAGGTCCGA 59.291 37.037 0.00 0.00 35.08 4.55
3224 3857 2.511373 CGAGCCGCCATGTTAGCA 60.511 61.111 0.00 0.00 0.00 3.49
3261 3894 8.671921 CATCCTGTTGGTATTCATATAATCTGC 58.328 37.037 0.00 0.00 34.23 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 8.784994 GCTTGATTGATCTTGATGAATATGAGT 58.215 33.333 0.00 0.00 0.00 3.41
15 16 8.784043 TGCTTGATTGATCTTGATGAATATGAG 58.216 33.333 0.00 0.00 0.00 2.90
16 17 8.685838 TGCTTGATTGATCTTGATGAATATGA 57.314 30.769 0.00 0.00 0.00 2.15
17 18 8.023706 CCTGCTTGATTGATCTTGATGAATATG 58.976 37.037 0.00 0.00 0.00 1.78
18 19 7.942894 TCCTGCTTGATTGATCTTGATGAATAT 59.057 33.333 0.00 0.00 0.00 1.28
19 20 7.284820 TCCTGCTTGATTGATCTTGATGAATA 58.715 34.615 0.00 0.00 0.00 1.75
20 21 6.127101 TCCTGCTTGATTGATCTTGATGAAT 58.873 36.000 0.00 0.00 0.00 2.57
21 22 5.503002 TCCTGCTTGATTGATCTTGATGAA 58.497 37.500 0.00 0.00 0.00 2.57
22 23 5.106876 TCCTGCTTGATTGATCTTGATGA 57.893 39.130 0.00 0.00 0.00 2.92
23 24 5.357314 ACTTCCTGCTTGATTGATCTTGATG 59.643 40.000 0.00 0.00 0.00 3.07
24 25 5.507637 ACTTCCTGCTTGATTGATCTTGAT 58.492 37.500 0.00 0.00 0.00 2.57
25 26 4.914983 ACTTCCTGCTTGATTGATCTTGA 58.085 39.130 0.00 0.00 0.00 3.02
26 27 5.296283 CCTACTTCCTGCTTGATTGATCTTG 59.704 44.000 0.00 0.00 0.00 3.02
27 28 5.435291 CCTACTTCCTGCTTGATTGATCTT 58.565 41.667 0.00 0.00 0.00 2.40
28 29 4.141528 CCCTACTTCCTGCTTGATTGATCT 60.142 45.833 0.00 0.00 0.00 2.75
29 30 4.133078 CCCTACTTCCTGCTTGATTGATC 58.867 47.826 0.00 0.00 0.00 2.92
30 31 3.525199 ACCCTACTTCCTGCTTGATTGAT 59.475 43.478 0.00 0.00 0.00 2.57
31 32 2.912956 ACCCTACTTCCTGCTTGATTGA 59.087 45.455 0.00 0.00 0.00 2.57
32 33 3.356529 ACCCTACTTCCTGCTTGATTG 57.643 47.619 0.00 0.00 0.00 2.67
33 34 5.717119 AATACCCTACTTCCTGCTTGATT 57.283 39.130 0.00 0.00 0.00 2.57
34 35 5.071923 GGTAATACCCTACTTCCTGCTTGAT 59.928 44.000 0.00 0.00 30.04 2.57
35 36 4.407945 GGTAATACCCTACTTCCTGCTTGA 59.592 45.833 0.00 0.00 30.04 3.02
36 37 4.409247 AGGTAATACCCTACTTCCTGCTTG 59.591 45.833 5.71 0.00 39.75 4.01
37 38 4.632292 AGGTAATACCCTACTTCCTGCTT 58.368 43.478 5.71 0.00 39.75 3.91
38 39 4.224762 GAGGTAATACCCTACTTCCTGCT 58.775 47.826 5.71 0.00 39.75 4.24
39 40 3.324268 GGAGGTAATACCCTACTTCCTGC 59.676 52.174 5.71 0.00 42.18 4.85
40 41 4.553678 TGGAGGTAATACCCTACTTCCTG 58.446 47.826 13.63 0.00 44.50 3.86
41 42 4.913154 TGGAGGTAATACCCTACTTCCT 57.087 45.455 13.63 0.00 44.50 3.36
42 43 6.559429 TCTATGGAGGTAATACCCTACTTCC 58.441 44.000 5.71 6.77 44.47 3.46
43 44 7.468496 TCTCTATGGAGGTAATACCCTACTTC 58.532 42.308 5.71 0.00 39.75 3.01
44 45 7.417811 TCTCTATGGAGGTAATACCCTACTT 57.582 40.000 5.71 0.00 39.75 2.24
45 46 6.011451 CCTCTCTATGGAGGTAATACCCTACT 60.011 46.154 5.71 0.00 45.65 2.57
46 47 6.189133 CCTCTCTATGGAGGTAATACCCTAC 58.811 48.000 5.71 0.00 45.65 3.18
47 48 6.404426 CCTCTCTATGGAGGTAATACCCTA 57.596 45.833 5.71 0.00 45.65 3.53
48 49 5.278127 CCTCTCTATGGAGGTAATACCCT 57.722 47.826 5.71 0.00 45.65 4.34
58 59 1.611491 GTTCGAGCCCTCTCTATGGAG 59.389 57.143 0.00 0.00 40.73 3.86
59 60 1.693627 GTTCGAGCCCTCTCTATGGA 58.306 55.000 0.00 0.00 37.19 3.41
60 61 0.676736 GGTTCGAGCCCTCTCTATGG 59.323 60.000 7.13 0.00 37.19 2.74
61 62 1.339610 CAGGTTCGAGCCCTCTCTATG 59.660 57.143 15.45 0.65 37.19 2.23
62 63 1.698506 CAGGTTCGAGCCCTCTCTAT 58.301 55.000 15.45 0.00 37.19 1.98
63 64 0.395862 CCAGGTTCGAGCCCTCTCTA 60.396 60.000 15.45 0.00 37.19 2.43
64 65 1.684049 CCAGGTTCGAGCCCTCTCT 60.684 63.158 15.45 0.00 37.19 3.10
65 66 2.726351 CCCAGGTTCGAGCCCTCTC 61.726 68.421 15.45 0.00 35.99 3.20
66 67 2.164332 TACCCAGGTTCGAGCCCTCT 62.164 60.000 15.45 0.00 0.00 3.69
67 68 1.262640 TTACCCAGGTTCGAGCCCTC 61.263 60.000 15.45 0.00 0.00 4.30
68 69 0.838987 TTTACCCAGGTTCGAGCCCT 60.839 55.000 15.45 7.31 0.00 5.19
69 70 0.675837 GTTTACCCAGGTTCGAGCCC 60.676 60.000 15.45 4.80 0.00 5.19
70 71 0.035739 TGTTTACCCAGGTTCGAGCC 59.964 55.000 10.83 10.83 0.00 4.70
71 72 2.007608 GATGTTTACCCAGGTTCGAGC 58.992 52.381 0.00 0.00 0.00 5.03
72 73 2.268298 CGATGTTTACCCAGGTTCGAG 58.732 52.381 0.00 0.00 0.00 4.04
73 74 1.619827 ACGATGTTTACCCAGGTTCGA 59.380 47.619 13.28 0.00 30.75 3.71
74 75 1.730064 CACGATGTTTACCCAGGTTCG 59.270 52.381 6.36 6.36 31.96 3.95
75 76 2.740447 GACACGATGTTTACCCAGGTTC 59.260 50.000 0.00 0.00 0.00 3.62
76 77 2.551504 GGACACGATGTTTACCCAGGTT 60.552 50.000 0.00 0.00 0.00 3.50
77 78 1.002773 GGACACGATGTTTACCCAGGT 59.997 52.381 0.00 0.00 0.00 4.00
78 79 1.677820 GGGACACGATGTTTACCCAGG 60.678 57.143 0.00 0.00 37.50 4.45
79 80 1.677820 GGGGACACGATGTTTACCCAG 60.678 57.143 0.00 0.00 38.30 4.45
80 81 0.325602 GGGGACACGATGTTTACCCA 59.674 55.000 0.00 0.00 38.30 4.51
81 82 0.393402 GGGGGACACGATGTTTACCC 60.393 60.000 13.15 13.15 37.95 3.69
82 83 0.741927 CGGGGGACACGATGTTTACC 60.742 60.000 0.00 0.00 0.00 2.85
83 84 0.037046 ACGGGGGACACGATGTTTAC 60.037 55.000 0.00 0.00 34.93 2.01
84 85 0.247185 GACGGGGGACACGATGTTTA 59.753 55.000 0.00 0.00 34.93 2.01
85 86 1.004200 GACGGGGGACACGATGTTT 60.004 57.895 0.00 0.00 34.93 2.83
86 87 1.885163 GAGACGGGGGACACGATGTT 61.885 60.000 0.00 0.00 34.93 2.71
87 88 2.283676 AGACGGGGGACACGATGT 60.284 61.111 0.00 0.00 34.93 3.06
88 89 2.494918 GAGACGGGGGACACGATG 59.505 66.667 0.00 0.00 34.93 3.84
89 90 2.758737 GGAGACGGGGGACACGAT 60.759 66.667 0.00 0.00 34.93 3.73
90 91 3.975591 AGGAGACGGGGGACACGA 61.976 66.667 0.00 0.00 34.93 4.35
91 92 3.760035 CAGGAGACGGGGGACACG 61.760 72.222 0.00 0.00 37.36 4.49
92 93 0.901580 TAACAGGAGACGGGGGACAC 60.902 60.000 0.00 0.00 0.00 3.67
93 94 0.042131 ATAACAGGAGACGGGGGACA 59.958 55.000 0.00 0.00 0.00 4.02
94 95 0.751452 GATAACAGGAGACGGGGGAC 59.249 60.000 0.00 0.00 0.00 4.46
95 96 0.337082 TGATAACAGGAGACGGGGGA 59.663 55.000 0.00 0.00 0.00 4.81
96 97 1.344763 GATGATAACAGGAGACGGGGG 59.655 57.143 0.00 0.00 0.00 5.40
97 98 1.000163 CGATGATAACAGGAGACGGGG 60.000 57.143 0.00 0.00 0.00 5.73
98 99 1.954382 TCGATGATAACAGGAGACGGG 59.046 52.381 0.00 0.00 0.00 5.28
99 100 3.924918 ATCGATGATAACAGGAGACGG 57.075 47.619 0.00 0.00 0.00 4.79
100 101 5.114785 AGAATCGATGATAACAGGAGACG 57.885 43.478 0.00 0.00 0.00 4.18
101 102 7.302524 GTCTAGAATCGATGATAACAGGAGAC 58.697 42.308 0.00 0.00 0.00 3.36
102 103 6.147985 CGTCTAGAATCGATGATAACAGGAGA 59.852 42.308 0.00 0.00 0.00 3.71
103 104 6.310960 CGTCTAGAATCGATGATAACAGGAG 58.689 44.000 0.00 0.00 0.00 3.69
104 105 5.334957 GCGTCTAGAATCGATGATAACAGGA 60.335 44.000 0.00 0.00 0.00 3.86
105 106 4.854291 GCGTCTAGAATCGATGATAACAGG 59.146 45.833 0.00 0.00 0.00 4.00
106 107 5.452777 TGCGTCTAGAATCGATGATAACAG 58.547 41.667 0.00 0.00 0.00 3.16
107 108 5.432885 TGCGTCTAGAATCGATGATAACA 57.567 39.130 0.00 0.00 0.00 2.41
108 109 7.244898 ACTATGCGTCTAGAATCGATGATAAC 58.755 38.462 0.00 0.00 0.00 1.89
109 110 7.379098 ACTATGCGTCTAGAATCGATGATAA 57.621 36.000 0.00 0.00 0.00 1.75
110 111 6.986904 ACTATGCGTCTAGAATCGATGATA 57.013 37.500 0.00 0.00 0.00 2.15
111 112 5.888691 ACTATGCGTCTAGAATCGATGAT 57.111 39.130 0.00 0.00 0.00 2.45
112 113 5.614887 CGAACTATGCGTCTAGAATCGATGA 60.615 44.000 0.00 0.00 35.56 2.92
113 114 4.551509 CGAACTATGCGTCTAGAATCGATG 59.448 45.833 0.00 0.00 35.56 3.84
114 115 4.378563 CCGAACTATGCGTCTAGAATCGAT 60.379 45.833 6.92 0.00 35.56 3.59
115 116 3.059120 CCGAACTATGCGTCTAGAATCGA 60.059 47.826 6.92 0.00 35.56 3.59
116 117 3.227147 CCGAACTATGCGTCTAGAATCG 58.773 50.000 0.00 0.00 34.49 3.34
117 118 3.252701 TCCCGAACTATGCGTCTAGAATC 59.747 47.826 0.00 0.00 0.00 2.52
118 119 3.004524 GTCCCGAACTATGCGTCTAGAAT 59.995 47.826 0.00 0.00 0.00 2.40
119 120 2.357009 GTCCCGAACTATGCGTCTAGAA 59.643 50.000 0.00 0.00 0.00 2.10
120 121 1.945394 GTCCCGAACTATGCGTCTAGA 59.055 52.381 0.00 0.00 0.00 2.43
121 122 1.001597 GGTCCCGAACTATGCGTCTAG 60.002 57.143 0.00 0.00 0.00 2.43
122 123 1.027357 GGTCCCGAACTATGCGTCTA 58.973 55.000 0.00 0.00 0.00 2.59
123 124 1.673808 GGGTCCCGAACTATGCGTCT 61.674 60.000 0.00 0.00 0.00 4.18
124 125 1.227176 GGGTCCCGAACTATGCGTC 60.227 63.158 0.00 0.00 0.00 5.19
125 126 2.728435 GGGGTCCCGAACTATGCGT 61.728 63.158 0.48 0.00 0.00 5.24
126 127 2.108362 GGGGTCCCGAACTATGCG 59.892 66.667 0.48 0.00 0.00 4.73
127 128 2.509422 GGGGGTCCCGAACTATGC 59.491 66.667 0.48 0.00 36.85 3.14
136 137 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
137 138 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
138 139 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
139 140 2.613421 GGATCTCGGGTAGGGGGT 59.387 66.667 0.00 0.00 0.00 4.95
140 141 2.600769 CGGATCTCGGGTAGGGGG 60.601 72.222 0.00 0.00 34.75 5.40
141 142 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
142 143 3.303928 GGCGGATCTCGGGTAGGG 61.304 72.222 5.87 0.00 39.69 3.53
143 144 3.671411 CGGCGGATCTCGGGTAGG 61.671 72.222 0.00 0.00 39.69 3.18
144 145 3.671411 CCGGCGGATCTCGGGTAG 61.671 72.222 24.41 0.00 42.32 3.18
149 150 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
150 151 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
151 152 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
152 153 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
153 154 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
154 155 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
160 161 2.725641 GGTGCCGGTGTCAAAACC 59.274 61.111 1.90 0.00 36.82 3.27
161 162 2.113131 CTCGGTGCCGGTGTCAAAAC 62.113 60.000 10.94 0.00 40.25 2.43
162 163 1.890041 CTCGGTGCCGGTGTCAAAA 60.890 57.895 10.94 0.00 40.25 2.44
163 164 2.280524 CTCGGTGCCGGTGTCAAA 60.281 61.111 10.94 0.00 40.25 2.69
164 165 4.308458 CCTCGGTGCCGGTGTCAA 62.308 66.667 10.94 0.00 40.25 3.18
166 167 1.952102 TAATCCTCGGTGCCGGTGTC 61.952 60.000 10.94 0.00 40.25 3.67
167 168 1.985662 TAATCCTCGGTGCCGGTGT 60.986 57.895 10.94 0.00 40.25 4.16
168 169 1.520787 GTAATCCTCGGTGCCGGTG 60.521 63.158 10.94 4.42 40.25 4.94
169 170 1.546589 TTGTAATCCTCGGTGCCGGT 61.547 55.000 10.94 0.00 40.25 5.28
170 171 0.179056 ATTGTAATCCTCGGTGCCGG 60.179 55.000 10.94 0.00 40.25 6.13
171 172 0.937304 CATTGTAATCCTCGGTGCCG 59.063 55.000 3.94 3.94 41.35 5.69
172 173 1.308998 CCATTGTAATCCTCGGTGCC 58.691 55.000 0.00 0.00 0.00 5.01
173 174 0.663153 GCCATTGTAATCCTCGGTGC 59.337 55.000 0.00 0.00 0.00 5.01
174 175 2.036958 TGCCATTGTAATCCTCGGTG 57.963 50.000 0.00 0.00 0.00 4.94
175 176 2.643551 CTTGCCATTGTAATCCTCGGT 58.356 47.619 0.00 0.00 0.00 4.69
176 177 1.334869 GCTTGCCATTGTAATCCTCGG 59.665 52.381 0.00 0.00 0.00 4.63
177 178 1.003545 CGCTTGCCATTGTAATCCTCG 60.004 52.381 0.00 0.00 0.00 4.63
178 179 1.268743 GCGCTTGCCATTGTAATCCTC 60.269 52.381 0.00 0.00 0.00 3.71
179 180 0.740737 GCGCTTGCCATTGTAATCCT 59.259 50.000 0.00 0.00 0.00 3.24
180 181 0.740737 AGCGCTTGCCATTGTAATCC 59.259 50.000 2.64 0.00 40.41 3.01
181 182 3.065371 ACTTAGCGCTTGCCATTGTAATC 59.935 43.478 18.68 0.00 40.41 1.75
182 183 3.016736 ACTTAGCGCTTGCCATTGTAAT 58.983 40.909 18.68 0.00 40.41 1.89
183 184 2.432444 ACTTAGCGCTTGCCATTGTAA 58.568 42.857 18.68 0.00 40.41 2.41
184 185 2.107950 ACTTAGCGCTTGCCATTGTA 57.892 45.000 18.68 0.00 40.41 2.41
185 186 1.200020 GAACTTAGCGCTTGCCATTGT 59.800 47.619 18.68 1.34 40.41 2.71
186 187 1.199789 TGAACTTAGCGCTTGCCATTG 59.800 47.619 18.68 0.66 40.41 2.82
187 188 1.533625 TGAACTTAGCGCTTGCCATT 58.466 45.000 18.68 3.19 40.41 3.16
188 189 1.402968 CATGAACTTAGCGCTTGCCAT 59.597 47.619 18.68 12.97 40.41 4.40
189 190 0.804364 CATGAACTTAGCGCTTGCCA 59.196 50.000 18.68 11.26 40.41 4.92
190 191 0.099436 CCATGAACTTAGCGCTTGCC 59.901 55.000 18.68 5.74 40.41 4.52
191 192 1.063174 CTCCATGAACTTAGCGCTTGC 59.937 52.381 18.68 0.00 39.58 4.01
192 193 2.350522 ACTCCATGAACTTAGCGCTTG 58.649 47.619 18.68 12.26 0.00 4.01
193 194 2.770164 ACTCCATGAACTTAGCGCTT 57.230 45.000 18.68 0.00 0.00 4.68
194 195 3.887621 TTACTCCATGAACTTAGCGCT 57.112 42.857 17.26 17.26 0.00 5.92
195 196 5.485662 AATTTACTCCATGAACTTAGCGC 57.514 39.130 0.00 0.00 0.00 5.92
196 197 7.126398 GCTTAATTTACTCCATGAACTTAGCG 58.874 38.462 0.00 0.00 0.00 4.26
197 198 7.985476 TGCTTAATTTACTCCATGAACTTAGC 58.015 34.615 0.00 0.00 0.00 3.09
200 201 9.023962 TGATTGCTTAATTTACTCCATGAACTT 57.976 29.630 0.00 0.00 0.00 2.66
201 202 8.579850 TGATTGCTTAATTTACTCCATGAACT 57.420 30.769 0.00 0.00 0.00 3.01
202 203 7.917505 CCTGATTGCTTAATTTACTCCATGAAC 59.082 37.037 0.00 0.00 0.00 3.18
203 204 7.416664 GCCTGATTGCTTAATTTACTCCATGAA 60.417 37.037 0.00 0.00 0.00 2.57
204 205 6.039717 GCCTGATTGCTTAATTTACTCCATGA 59.960 38.462 0.00 0.00 0.00 3.07
205 206 6.211515 GCCTGATTGCTTAATTTACTCCATG 58.788 40.000 0.00 0.00 0.00 3.66
206 207 5.009010 CGCCTGATTGCTTAATTTACTCCAT 59.991 40.000 0.00 0.00 0.00 3.41
207 208 4.335315 CGCCTGATTGCTTAATTTACTCCA 59.665 41.667 0.00 0.00 0.00 3.86
208 209 4.789802 GCGCCTGATTGCTTAATTTACTCC 60.790 45.833 0.00 0.00 0.00 3.85
209 210 4.035675 AGCGCCTGATTGCTTAATTTACTC 59.964 41.667 2.29 0.00 38.57 2.59
210 211 3.947834 AGCGCCTGATTGCTTAATTTACT 59.052 39.130 2.29 0.00 38.57 2.24
211 212 4.292977 AGCGCCTGATTGCTTAATTTAC 57.707 40.909 2.29 0.00 38.57 2.01
219 220 0.813210 GCTCTAAGCGCCTGATTGCT 60.813 55.000 2.29 0.00 44.97 3.91
220 221 1.091771 TGCTCTAAGCGCCTGATTGC 61.092 55.000 2.29 2.53 46.26 3.56
221 222 0.935898 CTGCTCTAAGCGCCTGATTG 59.064 55.000 2.29 0.00 46.26 2.67
222 223 0.179062 CCTGCTCTAAGCGCCTGATT 60.179 55.000 2.29 0.00 46.26 2.57
223 224 1.445095 CCTGCTCTAAGCGCCTGAT 59.555 57.895 2.29 0.00 46.26 2.90
224 225 2.895680 CCTGCTCTAAGCGCCTGA 59.104 61.111 2.29 0.00 46.26 3.86
225 226 2.894387 GCCTGCTCTAAGCGCCTG 60.894 66.667 2.29 0.00 46.26 4.85
226 227 3.382803 CTGCCTGCTCTAAGCGCCT 62.383 63.158 2.29 0.00 46.26 5.52
227 228 2.859273 TTCTGCCTGCTCTAAGCGCC 62.859 60.000 2.29 0.00 46.26 6.53
228 229 1.021390 TTTCTGCCTGCTCTAAGCGC 61.021 55.000 0.00 0.00 46.26 5.92
229 230 1.442769 TTTTCTGCCTGCTCTAAGCG 58.557 50.000 0.00 0.00 46.26 4.68
230 231 2.163211 CCTTTTTCTGCCTGCTCTAAGC 59.837 50.000 0.00 0.00 42.82 3.09
231 232 3.679389 TCCTTTTTCTGCCTGCTCTAAG 58.321 45.455 0.00 0.00 0.00 2.18
232 233 3.788227 TCCTTTTTCTGCCTGCTCTAA 57.212 42.857 0.00 0.00 0.00 2.10
233 234 3.370953 GGATCCTTTTTCTGCCTGCTCTA 60.371 47.826 3.84 0.00 0.00 2.43
234 235 2.620108 GGATCCTTTTTCTGCCTGCTCT 60.620 50.000 3.84 0.00 0.00 4.09
235 236 1.747924 GGATCCTTTTTCTGCCTGCTC 59.252 52.381 3.84 0.00 0.00 4.26
236 237 1.357079 AGGATCCTTTTTCTGCCTGCT 59.643 47.619 9.02 0.00 0.00 4.24
237 238 1.475682 CAGGATCCTTTTTCTGCCTGC 59.524 52.381 13.00 0.00 36.80 4.85
238 239 1.475682 GCAGGATCCTTTTTCTGCCTG 59.524 52.381 13.00 0.00 44.70 4.85
239 240 1.844687 GCAGGATCCTTTTTCTGCCT 58.155 50.000 13.00 0.00 44.70 4.75
242 243 2.094338 GGCAAGCAGGATCCTTTTTCTG 60.094 50.000 13.00 6.62 0.00 3.02
243 244 2.174360 GGCAAGCAGGATCCTTTTTCT 58.826 47.619 13.00 4.12 0.00 2.52
244 245 2.174360 AGGCAAGCAGGATCCTTTTTC 58.826 47.619 13.00 4.21 0.00 2.29
245 246 2.315720 AGGCAAGCAGGATCCTTTTT 57.684 45.000 13.00 6.61 0.00 1.94
246 247 2.310052 AGTAGGCAAGCAGGATCCTTTT 59.690 45.455 13.00 7.01 0.00 2.27
247 248 1.918957 AGTAGGCAAGCAGGATCCTTT 59.081 47.619 13.00 1.39 0.00 3.11
248 249 1.589414 AGTAGGCAAGCAGGATCCTT 58.411 50.000 13.00 0.00 0.00 3.36
249 250 1.488393 GAAGTAGGCAAGCAGGATCCT 59.512 52.381 9.02 9.02 0.00 3.24
256 257 1.562672 GGGGAGGAAGTAGGCAAGCA 61.563 60.000 0.00 0.00 0.00 3.91
265 266 2.003548 GGGAGCATGGGGAGGAAGT 61.004 63.158 0.00 0.00 0.00 3.01
268 269 1.771746 GATGGGAGCATGGGGAGGA 60.772 63.158 0.00 0.00 0.00 3.71
274 275 0.034059 GAGTACGGATGGGAGCATGG 59.966 60.000 0.00 0.00 0.00 3.66
279 280 2.857744 GCGGGAGTACGGATGGGAG 61.858 68.421 0.00 0.00 0.00 4.30
290 291 1.079127 CGTTGGATGAAGCGGGAGT 60.079 57.895 0.00 0.00 0.00 3.85
296 297 2.246719 AGATAGCCGTTGGATGAAGC 57.753 50.000 0.00 0.00 0.00 3.86
371 373 2.094390 GGAACAAAATAAAGCCCGACCC 60.094 50.000 0.00 0.00 0.00 4.46
372 374 2.559231 TGGAACAAAATAAAGCCCGACC 59.441 45.455 0.00 0.00 31.92 4.79
411 414 2.363975 GCCCATCCGTACTCCCACA 61.364 63.158 0.00 0.00 0.00 4.17
413 416 3.151710 CGCCCATCCGTACTCCCA 61.152 66.667 0.00 0.00 0.00 4.37
440 443 1.290324 GACGAGACTTGGCTGCTCA 59.710 57.895 0.00 0.00 0.00 4.26
447 450 0.319555 TTTCTGCGGACGAGACTTGG 60.320 55.000 0.00 0.00 0.00 3.61
456 459 2.732282 GCTTGCCTATTTTTCTGCGGAC 60.732 50.000 0.00 0.00 0.00 4.79
462 465 2.819608 TCAAGCGCTTGCCTATTTTTCT 59.180 40.909 38.89 4.23 40.24 2.52
463 466 2.917343 GTCAAGCGCTTGCCTATTTTTC 59.083 45.455 38.89 18.27 40.24 2.29
464 467 2.668279 CGTCAAGCGCTTGCCTATTTTT 60.668 45.455 38.89 5.05 40.24 1.94
465 468 1.135689 CGTCAAGCGCTTGCCTATTTT 60.136 47.619 38.89 5.89 40.24 1.82
466 469 0.447801 CGTCAAGCGCTTGCCTATTT 59.552 50.000 38.89 6.72 40.24 1.40
467 470 2.089854 CGTCAAGCGCTTGCCTATT 58.910 52.632 38.89 7.57 40.24 1.73
468 471 3.799753 CGTCAAGCGCTTGCCTAT 58.200 55.556 38.89 8.41 40.24 2.57
479 482 0.804989 GGGTCAAATGAGGCGTCAAG 59.195 55.000 13.87 6.84 35.88 3.02
480 483 0.953471 CGGGTCAAATGAGGCGTCAA 60.953 55.000 13.87 0.00 35.88 3.18
481 484 1.375396 CGGGTCAAATGAGGCGTCA 60.375 57.895 12.13 12.13 37.02 4.35
482 485 2.106683 CCGGGTCAAATGAGGCGTC 61.107 63.158 0.00 0.00 0.00 5.19
483 486 2.046314 CCGGGTCAAATGAGGCGT 60.046 61.111 0.00 0.00 0.00 5.68
484 487 3.508840 GCCGGGTCAAATGAGGCG 61.509 66.667 2.18 0.00 38.28 5.52
486 489 2.158755 AGATAAGCCGGGTCAAATGAGG 60.159 50.000 6.62 0.00 0.00 3.86
487 490 2.874701 CAGATAAGCCGGGTCAAATGAG 59.125 50.000 6.62 0.00 0.00 2.90
488 491 2.238646 ACAGATAAGCCGGGTCAAATGA 59.761 45.455 6.62 0.00 0.00 2.57
489 492 2.643551 ACAGATAAGCCGGGTCAAATG 58.356 47.619 6.62 6.98 0.00 2.32
490 493 3.366052 AACAGATAAGCCGGGTCAAAT 57.634 42.857 6.62 0.43 0.00 2.32
491 494 2.871096 AACAGATAAGCCGGGTCAAA 57.129 45.000 6.62 0.00 0.00 2.69
492 495 2.617021 GGAAACAGATAAGCCGGGTCAA 60.617 50.000 6.62 0.00 0.00 3.18
493 496 1.065709 GGAAACAGATAAGCCGGGTCA 60.066 52.381 6.62 0.00 0.00 4.02
496 499 1.486726 AGAGGAAACAGATAAGCCGGG 59.513 52.381 2.18 0.00 0.00 5.73
499 502 3.914426 TGGAGAGGAAACAGATAAGCC 57.086 47.619 0.00 0.00 0.00 4.35
504 507 3.371380 GGAAGCATGGAGAGGAAACAGAT 60.371 47.826 0.00 0.00 0.00 2.90
505 508 2.026822 GGAAGCATGGAGAGGAAACAGA 60.027 50.000 0.00 0.00 0.00 3.41
509 512 2.092212 GGATGGAAGCATGGAGAGGAAA 60.092 50.000 0.00 0.00 0.00 3.13
511 514 1.135094 GGATGGAAGCATGGAGAGGA 58.865 55.000 0.00 0.00 0.00 3.71
516 519 1.496060 AGTACGGATGGAAGCATGGA 58.504 50.000 0.00 0.00 0.00 3.41
522 525 7.549488 AGAATAAAGTGAAAGTACGGATGGAAG 59.451 37.037 0.00 0.00 0.00 3.46
524 527 6.942976 AGAATAAAGTGAAAGTACGGATGGA 58.057 36.000 0.00 0.00 0.00 3.41
533 536 6.485171 ACCAGCCATAGAATAAAGTGAAAGT 58.515 36.000 0.00 0.00 0.00 2.66
536 539 7.775053 AAAACCAGCCATAGAATAAAGTGAA 57.225 32.000 0.00 0.00 0.00 3.18
537 540 7.775053 AAAAACCAGCCATAGAATAAAGTGA 57.225 32.000 0.00 0.00 0.00 3.41
580 596 1.668751 GCGCTCATCCCGTTAAAATCA 59.331 47.619 0.00 0.00 0.00 2.57
606 679 2.180159 GAGACTTTGCCTACGCCCCA 62.180 60.000 0.00 0.00 0.00 4.96
610 683 3.081993 GCGAGACTTTGCCTACGC 58.918 61.111 0.00 0.00 39.33 4.42
616 689 1.062148 GATTTACGGGCGAGACTTTGC 59.938 52.381 0.00 0.00 0.00 3.68
617 690 2.618053 AGATTTACGGGCGAGACTTTG 58.382 47.619 0.00 0.00 0.00 2.77
618 691 4.460948 TTAGATTTACGGGCGAGACTTT 57.539 40.909 0.00 0.00 0.00 2.66
619 692 4.098960 TGATTAGATTTACGGGCGAGACTT 59.901 41.667 0.00 0.00 0.00 3.01
620 693 3.635373 TGATTAGATTTACGGGCGAGACT 59.365 43.478 0.00 0.00 0.00 3.24
621 694 3.973657 TGATTAGATTTACGGGCGAGAC 58.026 45.455 0.00 0.00 0.00 3.36
622 695 3.005472 CCTGATTAGATTTACGGGCGAGA 59.995 47.826 0.00 0.00 0.00 4.04
623 696 3.005472 TCCTGATTAGATTTACGGGCGAG 59.995 47.826 0.00 0.00 0.00 5.03
624 697 2.960384 TCCTGATTAGATTTACGGGCGA 59.040 45.455 0.00 0.00 0.00 5.54
625 698 3.380479 TCCTGATTAGATTTACGGGCG 57.620 47.619 0.00 0.00 0.00 6.13
626 699 5.305585 TGAATCCTGATTAGATTTACGGGC 58.694 41.667 0.00 0.00 34.12 6.13
627 700 6.073765 CGTTGAATCCTGATTAGATTTACGGG 60.074 42.308 11.19 0.00 37.83 5.28
628 701 6.700081 TCGTTGAATCCTGATTAGATTTACGG 59.300 38.462 15.55 0.00 39.67 4.02
629 702 7.694388 TCGTTGAATCCTGATTAGATTTACG 57.306 36.000 12.14 12.14 40.08 3.18
634 707 9.838339 AGTTAATTCGTTGAATCCTGATTAGAT 57.162 29.630 0.00 0.00 30.29 1.98
635 708 9.098355 CAGTTAATTCGTTGAATCCTGATTAGA 57.902 33.333 0.00 0.00 30.29 2.10
636 709 7.852945 GCAGTTAATTCGTTGAATCCTGATTAG 59.147 37.037 13.46 0.00 30.29 1.73
637 710 7.552687 AGCAGTTAATTCGTTGAATCCTGATTA 59.447 33.333 13.46 0.00 30.29 1.75
638 711 6.375455 AGCAGTTAATTCGTTGAATCCTGATT 59.625 34.615 13.46 0.00 30.29 2.57
639 712 5.882557 AGCAGTTAATTCGTTGAATCCTGAT 59.117 36.000 13.46 7.73 30.29 2.90
640 713 5.245531 AGCAGTTAATTCGTTGAATCCTGA 58.754 37.500 13.46 0.00 30.29 3.86
641 714 5.551760 AGCAGTTAATTCGTTGAATCCTG 57.448 39.130 0.00 2.12 30.29 3.86
642 715 7.865706 ATTAGCAGTTAATTCGTTGAATCCT 57.134 32.000 0.00 0.00 30.29 3.24
643 716 9.651718 CTAATTAGCAGTTAATTCGTTGAATCC 57.348 33.333 5.58 0.00 40.33 3.01
662 735 7.489757 GCTAGGATTAGATTCACGGCTAATTAG 59.510 40.741 8.20 8.20 37.42 1.73
663 736 7.321153 GCTAGGATTAGATTCACGGCTAATTA 58.679 38.462 0.00 0.00 37.42 1.40
664 737 6.166982 GCTAGGATTAGATTCACGGCTAATT 58.833 40.000 0.00 0.00 37.42 1.40
665 738 5.622460 CGCTAGGATTAGATTCACGGCTAAT 60.622 44.000 0.00 0.00 39.36 1.73
666 739 4.321008 CGCTAGGATTAGATTCACGGCTAA 60.321 45.833 0.00 0.00 0.00 3.09
667 740 3.190744 CGCTAGGATTAGATTCACGGCTA 59.809 47.826 0.00 0.00 0.00 3.93
668 741 2.029828 CGCTAGGATTAGATTCACGGCT 60.030 50.000 0.00 0.00 0.00 5.52
669 742 2.329379 CGCTAGGATTAGATTCACGGC 58.671 52.381 0.00 0.00 0.00 5.68
670 743 2.029828 AGCGCTAGGATTAGATTCACGG 60.030 50.000 8.99 0.00 0.00 4.94
671 744 3.238441 GAGCGCTAGGATTAGATTCACG 58.762 50.000 11.50 0.00 0.00 4.35
672 745 3.238441 CGAGCGCTAGGATTAGATTCAC 58.762 50.000 11.50 0.00 0.00 3.18
673 746 2.885266 ACGAGCGCTAGGATTAGATTCA 59.115 45.455 21.83 0.00 0.00 2.57
674 747 3.562567 ACGAGCGCTAGGATTAGATTC 57.437 47.619 21.83 0.00 0.00 2.52
675 748 3.570550 AGAACGAGCGCTAGGATTAGATT 59.429 43.478 21.83 4.77 0.00 2.40
676 749 3.150767 AGAACGAGCGCTAGGATTAGAT 58.849 45.455 21.83 0.00 0.00 1.98
677 750 2.573369 AGAACGAGCGCTAGGATTAGA 58.427 47.619 21.83 0.00 0.00 2.10
678 751 4.468643 CTTAGAACGAGCGCTAGGATTAG 58.531 47.826 21.83 8.22 0.00 1.73
679 752 3.304525 GCTTAGAACGAGCGCTAGGATTA 60.305 47.826 21.83 7.62 0.00 1.75
680 753 2.544069 GCTTAGAACGAGCGCTAGGATT 60.544 50.000 21.83 7.77 0.00 3.01
681 754 1.001158 GCTTAGAACGAGCGCTAGGAT 60.001 52.381 21.83 10.03 0.00 3.24
682 755 0.381089 GCTTAGAACGAGCGCTAGGA 59.619 55.000 21.83 1.21 0.00 2.94
683 756 2.874709 GCTTAGAACGAGCGCTAGG 58.125 57.895 21.83 14.06 0.00 3.02
689 762 3.255379 CGGGCGCTTAGAACGAGC 61.255 66.667 7.64 0.00 36.79 5.03
690 763 3.255379 GCGGGCGCTTAGAACGAG 61.255 66.667 7.64 0.00 38.26 4.18
693 766 3.116531 AACGCGGGCGCTTAGAAC 61.117 61.111 12.47 0.00 44.19 3.01
694 767 3.115892 CAACGCGGGCGCTTAGAA 61.116 61.111 12.47 0.00 44.19 2.10
703 776 3.599285 TAGGCTTGTCCAACGCGGG 62.599 63.158 12.47 2.26 37.29 6.13
704 777 1.635663 CTTAGGCTTGTCCAACGCGG 61.636 60.000 12.47 0.00 37.29 6.46
705 778 1.787847 CTTAGGCTTGTCCAACGCG 59.212 57.895 3.53 3.53 37.29 6.01
706 779 1.502190 GCTTAGGCTTGTCCAACGC 59.498 57.895 0.00 0.00 37.29 4.84
707 780 1.635663 CGGCTTAGGCTTGTCCAACG 61.636 60.000 3.89 0.00 38.73 4.10
708 781 1.923227 GCGGCTTAGGCTTGTCCAAC 61.923 60.000 3.89 0.00 38.73 3.77
709 782 1.674322 GCGGCTTAGGCTTGTCCAA 60.674 57.895 3.89 0.00 38.73 3.53
710 783 2.046314 GCGGCTTAGGCTTGTCCA 60.046 61.111 3.89 0.00 38.73 4.02
711 784 1.452108 ATGCGGCTTAGGCTTGTCC 60.452 57.895 3.89 0.00 38.73 4.02
712 785 1.026718 ACATGCGGCTTAGGCTTGTC 61.027 55.000 3.89 0.00 42.84 3.18
713 786 0.251916 TACATGCGGCTTAGGCTTGT 59.748 50.000 3.89 7.54 46.43 3.16
714 787 0.657840 GTACATGCGGCTTAGGCTTG 59.342 55.000 3.89 1.79 40.30 4.01
715 788 0.810031 CGTACATGCGGCTTAGGCTT 60.810 55.000 3.89 0.00 38.73 4.35
716 789 1.227263 CGTACATGCGGCTTAGGCT 60.227 57.895 3.89 0.00 38.73 4.58
717 790 1.520787 ACGTACATGCGGCTTAGGC 60.521 57.895 0.00 0.00 35.98 3.93
718 791 1.762222 GCACGTACATGCGGCTTAGG 61.762 60.000 0.00 0.00 35.50 2.69
719 792 1.636340 GCACGTACATGCGGCTTAG 59.364 57.895 0.00 0.00 35.50 2.18
720 793 3.788817 GCACGTACATGCGGCTTA 58.211 55.556 0.00 0.00 35.50 3.09
775 848 4.589908 CCTTTGCTGTACCTACCTGAAAT 58.410 43.478 0.00 0.00 0.00 2.17
780 853 1.003233 GTGCCTTTGCTGTACCTACCT 59.997 52.381 0.00 0.00 38.71 3.08
784 857 1.966451 GCGTGCCTTTGCTGTACCT 60.966 57.895 0.00 0.00 38.71 3.08
789 862 3.952675 ACACGCGTGCCTTTGCTG 61.953 61.111 37.35 12.65 38.71 4.41
798 871 4.297891 CAGCACACCACACGCGTG 62.298 66.667 35.99 35.99 43.21 5.34
839 913 1.050988 TGGGAGCCTATGGAGTGAGC 61.051 60.000 0.00 0.00 0.00 4.26
886 960 2.156310 CGTTGGTTTTACGCTCAGGTAC 59.844 50.000 0.00 0.00 31.73 3.34
887 961 2.406130 CGTTGGTTTTACGCTCAGGTA 58.594 47.619 0.00 0.00 31.73 3.08
889 963 0.515564 CCGTTGGTTTTACGCTCAGG 59.484 55.000 0.00 0.00 37.67 3.86
891 965 1.508808 GGCCGTTGGTTTTACGCTCA 61.509 55.000 0.00 0.00 37.67 4.26
892 966 1.208358 GGCCGTTGGTTTTACGCTC 59.792 57.895 0.00 0.00 37.67 5.03
893 967 1.228033 AGGCCGTTGGTTTTACGCT 60.228 52.632 0.00 0.00 37.67 5.07
894 968 1.081708 CAGGCCGTTGGTTTTACGC 60.082 57.895 0.00 0.00 37.67 4.42
895 969 0.515564 CTCAGGCCGTTGGTTTTACG 59.484 55.000 0.00 0.00 38.67 3.18
896 970 1.601166 ACTCAGGCCGTTGGTTTTAC 58.399 50.000 0.00 0.00 0.00 2.01
897 971 2.550639 GGTACTCAGGCCGTTGGTTTTA 60.551 50.000 0.00 0.00 0.00 1.52
898 972 1.601166 GTACTCAGGCCGTTGGTTTT 58.399 50.000 0.00 0.00 0.00 2.43
947 1025 3.020274 TGTAGGAGCTAGCTCTGAACTG 58.980 50.000 36.76 0.00 42.38 3.16
948 1026 3.020984 GTGTAGGAGCTAGCTCTGAACT 58.979 50.000 36.76 28.11 42.38 3.01
949 1027 2.100087 GGTGTAGGAGCTAGCTCTGAAC 59.900 54.545 36.76 30.03 42.38 3.18
950 1028 2.291605 TGGTGTAGGAGCTAGCTCTGAA 60.292 50.000 36.76 22.71 42.38 3.02
951 1029 1.285078 TGGTGTAGGAGCTAGCTCTGA 59.715 52.381 36.76 24.84 42.38 3.27
955 1033 1.490574 CCTTGGTGTAGGAGCTAGCT 58.509 55.000 19.45 19.45 37.50 3.32
993 1080 2.672996 GGCCACCACATGTCGCTT 60.673 61.111 0.00 0.00 0.00 4.68
1359 1452 4.676924 CGTGAATTTTGAAGCAAGACCTTC 59.323 41.667 0.00 0.00 41.21 3.46
1466 1767 5.599732 ACATGATTTGCAACACTTTTAGCA 58.400 33.333 0.00 0.00 34.79 3.49
1469 1770 8.409371 TGAAGTACATGATTTGCAACACTTTTA 58.591 29.630 0.00 0.00 30.63 1.52
1476 1777 4.616802 CGGTTGAAGTACATGATTTGCAAC 59.383 41.667 0.00 8.17 35.06 4.17
1507 1808 6.469410 TCTATAACATGTCTCGTTTTGGGTT 58.531 36.000 0.00 0.00 0.00 4.11
1508 1809 6.045072 TCTATAACATGTCTCGTTTTGGGT 57.955 37.500 0.00 0.00 0.00 4.51
1511 1812 7.413000 CCCACTTCTATAACATGTCTCGTTTTG 60.413 40.741 0.00 0.00 0.00 2.44
1512 1813 6.594159 CCCACTTCTATAACATGTCTCGTTTT 59.406 38.462 0.00 0.00 0.00 2.43
1551 1852 9.933723 ATTCCTAATTTTCCTGTCAAATTTCAG 57.066 29.630 0.88 0.88 35.78 3.02
1734 2039 7.581213 TTCAACTACCATTGAAAACACAGAT 57.419 32.000 0.00 0.00 43.81 2.90
1849 2407 4.007659 AGTAGCGGTCCAACTTATTTTGG 58.992 43.478 0.00 0.00 46.64 3.28
1866 2439 7.041303 ACCTTGTAAAAGAGCAAGTTAAGTAGC 60.041 37.037 0.00 0.00 40.13 3.58
2020 2593 1.132657 TGGGTAGAGGAGGTTGGTTGA 60.133 52.381 0.00 0.00 0.00 3.18
2043 2616 1.148273 AACGGCAAAGAGGAGCACA 59.852 52.632 0.00 0.00 0.00 4.57
2474 3052 3.753797 TGAGATGAGATTAGGGACGATCG 59.246 47.826 14.88 14.88 32.54 3.69
2539 3129 3.292426 TTTTTCAGCGCGTGGAGTA 57.708 47.368 8.43 0.00 0.00 2.59
2606 3196 8.191446 CCTTACGGTCTAATGTATGGATCATAG 58.809 40.741 0.00 0.00 37.83 2.23
2636 3266 8.283699 CGTAAGGGAGGAAAACCAAAATTATA 57.716 34.615 0.00 0.00 0.00 0.98
2664 3294 7.836479 AGATTTTAGTACTTCGGCTAGGTAT 57.164 36.000 0.00 0.00 0.00 2.73
2665 3295 8.930846 ATAGATTTTAGTACTTCGGCTAGGTA 57.069 34.615 0.00 0.00 0.00 3.08
2731 3361 5.250774 GGAGTGAGCATATTTAGGGGGATTA 59.749 44.000 0.00 0.00 0.00 1.75
2736 3366 2.289694 CGGGAGTGAGCATATTTAGGGG 60.290 54.545 0.00 0.00 0.00 4.79
2772 3402 2.848678 AGAGAGGCCACCACTACATA 57.151 50.000 5.01 0.00 0.00 2.29
2773 3403 1.958288 AAGAGAGGCCACCACTACAT 58.042 50.000 5.01 0.00 0.00 2.29
2774 3404 1.623811 GAAAGAGAGGCCACCACTACA 59.376 52.381 5.01 0.00 0.00 2.74
2775 3405 1.903183 AGAAAGAGAGGCCACCACTAC 59.097 52.381 5.01 0.43 0.00 2.73
2776 3406 2.180276 GAGAAAGAGAGGCCACCACTA 58.820 52.381 5.01 0.00 0.00 2.74
2961 3591 1.135774 CCTAAAGTTTTCTTCGGCGCC 60.136 52.381 19.07 19.07 39.48 6.53
3007 3637 2.126071 CGCGGTTGGACGATGAGT 60.126 61.111 0.00 0.00 35.47 3.41
3011 3644 3.026431 ATTCCCGCGGTTGGACGAT 62.026 57.895 26.12 2.78 35.47 3.73
3012 3645 3.697747 ATTCCCGCGGTTGGACGA 61.698 61.111 26.12 10.20 35.47 4.20
3013 3646 3.496131 CATTCCCGCGGTTGGACG 61.496 66.667 26.12 7.54 0.00 4.79
3014 3647 3.131478 CCATTCCCGCGGTTGGAC 61.131 66.667 26.42 0.00 31.91 4.02
3026 3659 0.466922 CCCCACATCAGAGGCCATTC 60.467 60.000 5.01 0.00 0.00 2.67
3059 3692 0.320683 CACTCCGACACAAGCCATGA 60.321 55.000 0.00 0.00 0.00 3.07
3087 3720 0.178929 ATCCTAGATCCCCGGTGTCC 60.179 60.000 0.00 0.00 0.00 4.02
3108 3741 1.434555 CCGAACGCACAAATACAGGA 58.565 50.000 0.00 0.00 0.00 3.86
3142 3775 7.764443 TGTAACTTTGATAGTGGATTGACTAGC 59.236 37.037 0.00 0.00 37.12 3.42
3150 3783 7.016153 TCCTTGTGTAACTTTGATAGTGGAT 57.984 36.000 0.00 0.00 37.12 3.41
3164 3797 7.012894 CAGTTGTGTCCTTATTTCCTTGTGTAA 59.987 37.037 0.00 0.00 0.00 2.41
3165 3798 6.485313 CAGTTGTGTCCTTATTTCCTTGTGTA 59.515 38.462 0.00 0.00 0.00 2.90
3189 3822 5.566032 CGGCTCGGACCTGTATATAAAATCA 60.566 44.000 0.00 0.00 0.00 2.57
3209 3842 2.051334 TTTATGCTAACATGGCGGCT 57.949 45.000 11.43 0.00 37.04 5.52
3261 3894 5.095691 ACAACTTGAGCACTTGTATTTCG 57.904 39.130 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.