Multiple sequence alignment - TraesCS2A01G113300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G113300 chr2A 100.000 4452 0 0 1 4452 64015026 64010575 0.000000e+00 8222.0
1 TraesCS2A01G113300 chr2A 98.864 2641 9 1 4 2644 64346378 64348997 0.000000e+00 4691.0
2 TraesCS2A01G113300 chr2A 96.794 811 22 3 1145 1955 758563129 758562323 0.000000e+00 1351.0
3 TraesCS2A01G113300 chr2A 83.604 677 105 6 2483 3156 66786199 66785526 8.130000e-177 630.0
4 TraesCS2A01G113300 chr2A 83.929 168 17 6 43 201 240764494 240764660 7.710000e-33 152.0
5 TraesCS2A01G113300 chr2A 97.436 39 1 0 3182 3220 66785536 66785498 2.870000e-07 67.6
6 TraesCS2A01G113300 chr2D 92.648 1129 45 16 2 1117 63214686 63215789 0.000000e+00 1591.0
7 TraesCS2A01G113300 chr2D 83.348 1165 176 10 2329 3477 67576109 67577271 0.000000e+00 1061.0
8 TraesCS2A01G113300 chr2D 90.361 332 19 11 1972 2300 63215788 63216109 1.480000e-114 424.0
9 TraesCS2A01G113300 chr2D 87.397 365 17 3 4117 4452 595908952 595908588 4.170000e-105 392.0
10 TraesCS2A01G113300 chr2D 94.841 252 1 1 2305 2544 63216222 63216473 2.510000e-102 383.0
11 TraesCS2A01G113300 chr2D 82.812 384 40 10 3687 4070 595909561 595909204 2.000000e-83 320.0
12 TraesCS2A01G113300 chr2D 98.571 70 1 0 2575 2644 63216473 63216542 1.680000e-24 124.0
13 TraesCS2A01G113300 chr4D 92.721 838 32 7 1144 1955 109916493 109917327 0.000000e+00 1182.0
14 TraesCS2A01G113300 chr4A 91.737 835 34 9 1145 1955 626334045 626333222 0.000000e+00 1127.0
15 TraesCS2A01G113300 chr5B 90.311 836 53 6 1145 1955 306419440 306418608 0.000000e+00 1070.0
16 TraesCS2A01G113300 chr5B 85.738 603 67 10 2 590 356341298 356340701 1.760000e-173 619.0
17 TraesCS2A01G113300 chr3D 89.988 839 54 7 1145 1956 571046518 571047353 0.000000e+00 1057.0
18 TraesCS2A01G113300 chr3D 89.189 222 14 5 3700 3916 19630310 19630094 7.340000e-68 268.0
19 TraesCS2A01G113300 chr3D 89.189 222 14 5 3700 3916 536420277 536420061 7.340000e-68 268.0
20 TraesCS2A01G113300 chr3D 90.196 102 7 3 3970 4070 19630082 19629983 3.610000e-26 130.0
21 TraesCS2A01G113300 chr1B 90.146 822 34 15 1169 1966 272874133 272873335 0.000000e+00 1026.0
22 TraesCS2A01G113300 chr5D 88.966 725 50 9 1257 1955 536358761 536358041 0.000000e+00 869.0
23 TraesCS2A01G113300 chr5D 89.011 91 8 2 3970 4059 303407310 303407221 1.310000e-20 111.0
24 TraesCS2A01G113300 chr1A 85.546 851 73 30 1144 1959 255006947 255006112 0.000000e+00 845.0
25 TraesCS2A01G113300 chr6B 85.396 808 91 22 1155 1950 599983901 599984693 0.000000e+00 813.0
26 TraesCS2A01G113300 chr6B 86.700 594 64 4 2 589 683997649 683998233 0.000000e+00 645.0
27 TraesCS2A01G113300 chr2B 82.315 311 49 5 3042 3349 102851951 102851644 9.500000e-67 265.0
28 TraesCS2A01G113300 chr6A 90.230 174 17 0 417 590 57957795 57957968 1.250000e-55 228.0
29 TraesCS2A01G113300 chr6A 85.185 162 14 6 49 201 617063565 617063405 1.660000e-34 158.0
30 TraesCS2A01G113300 chr6A 84.932 146 22 0 447 592 617063266 617063121 9.980000e-32 148.0
31 TraesCS2A01G113300 chr6A 88.119 101 12 0 2 102 57957698 57957798 2.180000e-23 121.0
32 TraesCS2A01G113300 chr6D 84.568 162 15 3 49 201 98751897 98751737 7.710000e-33 152.0
33 TraesCS2A01G113300 chr6D 89.216 102 8 3 3970 4070 79884553 79884652 1.680000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G113300 chr2A 64010575 64015026 4451 True 8222.0 8222 100.00000 1 4452 1 chr2A.!!$R1 4451
1 TraesCS2A01G113300 chr2A 64346378 64348997 2619 False 4691.0 4691 98.86400 4 2644 1 chr2A.!!$F1 2640
2 TraesCS2A01G113300 chr2A 758562323 758563129 806 True 1351.0 1351 96.79400 1145 1955 1 chr2A.!!$R2 810
3 TraesCS2A01G113300 chr2A 66785498 66786199 701 True 348.8 630 90.52000 2483 3220 2 chr2A.!!$R3 737
4 TraesCS2A01G113300 chr2D 67576109 67577271 1162 False 1061.0 1061 83.34800 2329 3477 1 chr2D.!!$F1 1148
5 TraesCS2A01G113300 chr2D 63214686 63216542 1856 False 630.5 1591 94.10525 2 2644 4 chr2D.!!$F2 2642
6 TraesCS2A01G113300 chr2D 595908588 595909561 973 True 356.0 392 85.10450 3687 4452 2 chr2D.!!$R1 765
7 TraesCS2A01G113300 chr4D 109916493 109917327 834 False 1182.0 1182 92.72100 1144 1955 1 chr4D.!!$F1 811
8 TraesCS2A01G113300 chr4A 626333222 626334045 823 True 1127.0 1127 91.73700 1145 1955 1 chr4A.!!$R1 810
9 TraesCS2A01G113300 chr5B 306418608 306419440 832 True 1070.0 1070 90.31100 1145 1955 1 chr5B.!!$R1 810
10 TraesCS2A01G113300 chr5B 356340701 356341298 597 True 619.0 619 85.73800 2 590 1 chr5B.!!$R2 588
11 TraesCS2A01G113300 chr3D 571046518 571047353 835 False 1057.0 1057 89.98800 1145 1956 1 chr3D.!!$F1 811
12 TraesCS2A01G113300 chr1B 272873335 272874133 798 True 1026.0 1026 90.14600 1169 1966 1 chr1B.!!$R1 797
13 TraesCS2A01G113300 chr5D 536358041 536358761 720 True 869.0 869 88.96600 1257 1955 1 chr5D.!!$R2 698
14 TraesCS2A01G113300 chr1A 255006112 255006947 835 True 845.0 845 85.54600 1144 1959 1 chr1A.!!$R1 815
15 TraesCS2A01G113300 chr6B 599983901 599984693 792 False 813.0 813 85.39600 1155 1950 1 chr6B.!!$F1 795
16 TraesCS2A01G113300 chr6B 683997649 683998233 584 False 645.0 645 86.70000 2 589 1 chr6B.!!$F2 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 283 0.959553 AGTCGTCTGATTCACACCGT 59.040 50.000 0.00 0.0 0.00 4.83 F
480 509 4.322650 GGTACCATTGTCTAACCCGTTACA 60.323 45.833 7.15 0.0 0.00 2.41 F
2697 2950 0.828022 TATCCTTCACCGTTGGCGAT 59.172 50.000 0.00 0.0 41.33 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2652 2905 3.117046 CCTCGAATTAGGCTTCTTCGTC 58.883 50.0 22.29 2.06 41.74 4.20 R
2715 2968 1.115930 GCGGGGAGCCATTCTCTCTA 61.116 60.0 0.00 0.00 42.13 2.43 R
3594 4138 0.033504 GCAAGACGGTTCTCACCTCA 59.966 55.0 0.00 0.00 41.64 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 177 2.579657 AACTCCGGTGATGGTCGCA 61.580 57.895 11.17 0.00 0.00 5.10
276 283 0.959553 AGTCGTCTGATTCACACCGT 59.040 50.000 0.00 0.00 0.00 4.83
480 509 4.322650 GGTACCATTGTCTAACCCGTTACA 60.323 45.833 7.15 0.00 0.00 2.41
2658 2911 1.817099 GGCCATGCCTCAGACGAAG 60.817 63.158 0.00 0.00 46.69 3.79
2666 2919 1.204941 GCCTCAGACGAAGAAGCCTAA 59.795 52.381 0.00 0.00 0.00 2.69
2667 2920 2.159028 GCCTCAGACGAAGAAGCCTAAT 60.159 50.000 0.00 0.00 0.00 1.73
2672 2925 3.794028 CAGACGAAGAAGCCTAATTCGAG 59.206 47.826 15.56 4.37 46.57 4.04
2676 2929 3.428999 CGAAGAAGCCTAATTCGAGGACA 60.429 47.826 5.54 0.00 46.57 4.02
2697 2950 0.828022 TATCCTTCACCGTTGGCGAT 59.172 50.000 0.00 0.00 41.33 4.58
2699 2952 2.398554 CCTTCACCGTTGGCGATGG 61.399 63.158 11.65 11.65 41.33 3.51
2715 2968 1.350351 GATGGCCTCTATGTGATGGCT 59.650 52.381 3.32 0.00 44.36 4.75
2722 2975 4.661222 CCTCTATGTGATGGCTAGAGAGA 58.339 47.826 7.56 0.00 40.51 3.10
2723 2976 5.076182 CCTCTATGTGATGGCTAGAGAGAA 58.924 45.833 7.56 0.00 40.51 2.87
2747 3000 4.169696 CCCGCCCCATTCGCACTA 62.170 66.667 0.00 0.00 0.00 2.74
2757 3010 2.292267 CATTCGCACTATTTCCAGGCT 58.708 47.619 0.00 0.00 0.00 4.58
2760 3013 1.555075 TCGCACTATTTCCAGGCTCTT 59.445 47.619 0.00 0.00 0.00 2.85
2761 3014 2.764010 TCGCACTATTTCCAGGCTCTTA 59.236 45.455 0.00 0.00 0.00 2.10
2764 3017 4.502259 CGCACTATTTCCAGGCTCTTATCT 60.502 45.833 0.00 0.00 0.00 1.98
2774 3027 1.289380 CTCTTATCTACGGCCGCCC 59.711 63.158 28.58 0.00 0.00 6.13
2793 3046 4.101448 CCTGGCTTCCTCCACCCG 62.101 72.222 0.00 0.00 31.74 5.28
2819 3072 4.082523 GCACTGGCGCCCTCTACA 62.083 66.667 26.77 2.02 0.00 2.74
2827 3080 2.188994 GCCCTCTACAGCAGCCTG 59.811 66.667 0.00 0.00 44.80 4.85
2828 3081 2.362369 GCCCTCTACAGCAGCCTGA 61.362 63.158 0.00 0.00 41.77 3.86
2838 3091 1.808945 CAGCAGCCTGACTTCGATTTT 59.191 47.619 0.00 0.00 41.77 1.82
2845 3098 3.664107 CCTGACTTCGATTTTCCTGACA 58.336 45.455 0.00 0.00 0.00 3.58
2849 3102 2.806244 ACTTCGATTTTCCTGACAACGG 59.194 45.455 0.00 0.00 0.00 4.44
2869 3409 3.509137 GACGTCCCGAGCAACCACA 62.509 63.158 3.51 0.00 0.00 4.17
2876 3416 2.620112 CGAGCAACCACAAGCCAGG 61.620 63.158 0.00 0.00 0.00 4.45
2877 3417 1.228245 GAGCAACCACAAGCCAGGA 60.228 57.895 0.00 0.00 0.00 3.86
2895 3435 1.003051 AGAGGCGGTGAACCCCTAT 59.997 57.895 8.88 4.47 36.99 2.57
2897 3437 2.192175 GGCGGTGAACCCCTATGG 59.808 66.667 0.00 0.00 41.37 2.74
2909 3449 0.625849 CCCTATGGGTTCAGTGCCTT 59.374 55.000 0.00 0.00 38.25 4.35
2921 3461 3.525619 GTGCCTTCACGGTGTATGA 57.474 52.632 8.17 0.00 32.98 2.15
2940 3480 3.660865 TGATGATTCGCAGATCTGGATG 58.339 45.455 23.89 0.00 35.04 3.51
2952 3492 1.126948 TCTGGATGTCCACTGTGGCA 61.127 55.000 22.02 21.23 42.01 4.92
2955 3495 2.359107 ATGTCCACTGTGGCAGCG 60.359 61.111 22.02 0.00 37.47 5.18
2971 3511 1.893137 CAGCGGGCATATACTCCTACA 59.107 52.381 0.00 0.00 0.00 2.74
2982 3522 1.700955 ACTCCTACAACACGGTGAGT 58.299 50.000 16.29 14.59 0.00 3.41
3006 3546 2.496899 CCTGGAGCAAGGTACATGTT 57.503 50.000 2.30 0.00 32.17 2.71
3009 3549 3.560025 CCTGGAGCAAGGTACATGTTTCT 60.560 47.826 2.30 0.00 32.17 2.52
3048 3588 1.255667 GGGCTGAGTACGTCCCTGAA 61.256 60.000 0.00 0.00 35.87 3.02
3078 3618 1.819288 TGGTTTGGCTTTTCACGTGAA 59.181 42.857 26.53 26.53 0.00 3.18
3080 3620 2.098443 GGTTTGGCTTTTCACGTGAAGA 59.902 45.455 28.21 23.63 35.21 2.87
3097 3637 1.447489 GACGAGCAGCTCTGTGCAT 60.447 57.895 20.39 0.00 46.60 3.96
3109 3649 0.805322 CTGTGCATCTGACCTCGCTC 60.805 60.000 0.00 0.00 0.00 5.03
3144 3684 0.843309 TGCAGAAGGTGTGGGAAGAA 59.157 50.000 0.00 0.00 0.00 2.52
3173 3713 1.599047 CTGAGCGGTGTTCCCTGAT 59.401 57.895 0.00 0.00 0.00 2.90
3180 3720 1.296715 GTGTTCCCTGATGGCGTCT 59.703 57.895 8.40 0.00 0.00 4.18
3184 3724 1.191489 TTCCCTGATGGCGTCTCACA 61.191 55.000 8.40 0.00 0.00 3.58
3228 3768 2.280797 TGTGTGGCGAGGCTGTTC 60.281 61.111 0.00 0.00 0.00 3.18
3245 3785 0.250727 TTCCAGAAAACAGAGCGGGG 60.251 55.000 0.00 0.00 0.00 5.73
3247 3787 1.374947 CAGAAAACAGAGCGGGGGA 59.625 57.895 0.00 0.00 0.00 4.81
3248 3788 0.955919 CAGAAAACAGAGCGGGGGAC 60.956 60.000 0.00 0.00 0.00 4.46
3263 3803 1.376037 GGACGCTTCACCCTTCAGG 60.376 63.158 0.00 0.00 43.78 3.86
3270 3810 0.690762 TTCACCCTTCAGGCTACACC 59.309 55.000 0.00 0.00 40.58 4.16
3273 3813 1.145571 ACCCTTCAGGCTACACCAAA 58.854 50.000 0.00 0.00 43.14 3.28
3276 3816 0.798776 CTTCAGGCTACACCAAAGCG 59.201 55.000 0.00 0.00 43.14 4.68
3294 3834 1.073216 CGGAGCACTTCGCAGTACTG 61.073 60.000 18.93 18.93 46.13 2.74
3297 3837 0.962489 AGCACTTCGCAGTACTGTCT 59.038 50.000 23.44 7.33 46.13 3.41
3300 3840 1.000163 CACTTCGCAGTACTGTCTGGT 60.000 52.381 23.44 14.39 36.12 4.00
3303 3843 0.596577 TCGCAGTACTGTCTGGTGTC 59.403 55.000 23.44 3.95 36.12 3.67
3307 3847 1.200252 CAGTACTGTCTGGTGTCGAGG 59.800 57.143 15.06 0.00 0.00 4.63
3312 3852 2.135933 CTGTCTGGTGTCGAGGTTTTC 58.864 52.381 0.00 0.00 0.00 2.29
3315 3855 2.036387 TCTGGTGTCGAGGTTTTCAGA 58.964 47.619 0.00 0.00 0.00 3.27
3317 3857 1.149148 GGTGTCGAGGTTTTCAGAGC 58.851 55.000 0.00 0.00 0.00 4.09
3323 3863 1.609208 GAGGTTTTCAGAGCTGGCAA 58.391 50.000 0.00 0.00 0.00 4.52
3337 3877 1.741770 GGCAACACAGGTAGCCTCG 60.742 63.158 0.00 0.00 43.70 4.63
3341 3881 0.889306 AACACAGGTAGCCTCGAGAC 59.111 55.000 15.71 0.84 0.00 3.36
3376 3916 0.584396 CAAACGTTACAGCTTCGGCA 59.416 50.000 0.00 0.00 44.74 5.69
3396 3936 4.201990 GGCAATGATGAGGTCAAACTGATC 60.202 45.833 0.00 0.00 40.97 2.92
3401 3941 5.668471 TGATGAGGTCAAACTGATCTGATC 58.332 41.667 10.72 10.72 44.88 2.92
3402 3942 5.668471 GATGAGGTCAAACTGATCTGATCA 58.332 41.667 18.61 18.61 44.31 2.92
3419 3960 9.853555 GATCTGATCATAATCCTACTGTTGTAG 57.146 37.037 12.66 0.00 44.23 2.74
3437 3981 9.667107 CTGTTGTAGGTGATTTATCCTCTTTTA 57.333 33.333 0.00 0.00 35.51 1.52
3438 3982 9.667107 TGTTGTAGGTGATTTATCCTCTTTTAG 57.333 33.333 0.00 0.00 35.51 1.85
3455 3999 7.040823 CCTCTTTTAGATGCAAGAACAAAGACT 60.041 37.037 0.00 0.00 0.00 3.24
3458 4002 9.766277 CTTTTAGATGCAAGAACAAAGACTATC 57.234 33.333 0.00 0.00 0.00 2.08
3459 4003 7.525688 TTAGATGCAAGAACAAAGACTATCG 57.474 36.000 0.00 0.00 0.00 2.92
3477 4021 8.857098 AGACTATCGTATTTTATCCTGCAGTTA 58.143 33.333 13.81 0.00 0.00 2.24
3478 4022 9.640963 GACTATCGTATTTTATCCTGCAGTTAT 57.359 33.333 13.81 8.45 0.00 1.89
3479 4023 9.998106 ACTATCGTATTTTATCCTGCAGTTATT 57.002 29.630 13.81 0.00 0.00 1.40
3481 4025 8.677148 ATCGTATTTTATCCTGCAGTTATTGT 57.323 30.769 13.81 0.00 0.00 2.71
3482 4026 8.500753 TCGTATTTTATCCTGCAGTTATTGTT 57.499 30.769 13.81 0.00 0.00 2.83
3483 4027 8.952278 TCGTATTTTATCCTGCAGTTATTGTTT 58.048 29.630 13.81 0.00 0.00 2.83
3484 4028 9.221775 CGTATTTTATCCTGCAGTTATTGTTTC 57.778 33.333 13.81 0.00 0.00 2.78
3485 4029 9.221775 GTATTTTATCCTGCAGTTATTGTTTCG 57.778 33.333 13.81 0.00 0.00 3.46
3486 4030 6.811253 TTTATCCTGCAGTTATTGTTTCGT 57.189 33.333 13.81 0.00 0.00 3.85
3487 4031 6.811253 TTATCCTGCAGTTATTGTTTCGTT 57.189 33.333 13.81 0.00 0.00 3.85
3488 4032 4.481930 TCCTGCAGTTATTGTTTCGTTG 57.518 40.909 13.81 0.00 0.00 4.10
3489 4033 3.880490 TCCTGCAGTTATTGTTTCGTTGT 59.120 39.130 13.81 0.00 0.00 3.32
3490 4034 5.057819 TCCTGCAGTTATTGTTTCGTTGTA 58.942 37.500 13.81 0.00 0.00 2.41
3491 4035 5.527951 TCCTGCAGTTATTGTTTCGTTGTAA 59.472 36.000 13.81 0.00 0.00 2.41
3492 4036 6.205853 TCCTGCAGTTATTGTTTCGTTGTAAT 59.794 34.615 13.81 0.00 0.00 1.89
3493 4037 6.305399 CCTGCAGTTATTGTTTCGTTGTAATG 59.695 38.462 13.81 0.00 0.00 1.90
3494 4038 6.730175 TGCAGTTATTGTTTCGTTGTAATGT 58.270 32.000 0.00 0.00 0.00 2.71
3495 4039 6.853872 TGCAGTTATTGTTTCGTTGTAATGTC 59.146 34.615 0.00 0.00 0.00 3.06
3496 4040 7.075741 GCAGTTATTGTTTCGTTGTAATGTCT 58.924 34.615 0.00 0.00 0.00 3.41
3497 4041 7.059488 GCAGTTATTGTTTCGTTGTAATGTCTG 59.941 37.037 0.00 0.00 0.00 3.51
3498 4042 7.533900 CAGTTATTGTTTCGTTGTAATGTCTGG 59.466 37.037 0.00 0.00 0.00 3.86
3499 4043 4.822036 TTGTTTCGTTGTAATGTCTGGG 57.178 40.909 0.00 0.00 0.00 4.45
3500 4044 2.550606 TGTTTCGTTGTAATGTCTGGGC 59.449 45.455 0.00 0.00 0.00 5.36
3501 4045 1.816074 TTCGTTGTAATGTCTGGGCC 58.184 50.000 0.00 0.00 0.00 5.80
3502 4046 0.687920 TCGTTGTAATGTCTGGGCCA 59.312 50.000 5.85 5.85 0.00 5.36
3503 4047 1.280710 TCGTTGTAATGTCTGGGCCAT 59.719 47.619 6.72 0.00 0.00 4.40
3504 4048 1.670811 CGTTGTAATGTCTGGGCCATC 59.329 52.381 6.72 4.07 0.00 3.51
3505 4049 2.680805 CGTTGTAATGTCTGGGCCATCT 60.681 50.000 6.72 0.00 0.00 2.90
3506 4050 2.684881 GTTGTAATGTCTGGGCCATCTG 59.315 50.000 6.72 0.00 0.00 2.90
3507 4051 1.312815 GTAATGTCTGGGCCATCTGC 58.687 55.000 6.72 0.00 40.16 4.26
3508 4052 1.133976 GTAATGTCTGGGCCATCTGCT 60.134 52.381 6.72 0.00 40.92 4.24
3509 4053 0.333993 AATGTCTGGGCCATCTGCTT 59.666 50.000 6.72 0.00 40.92 3.91
3510 4054 0.106819 ATGTCTGGGCCATCTGCTTC 60.107 55.000 6.72 0.00 40.92 3.86
3511 4055 1.300963 GTCTGGGCCATCTGCTTCA 59.699 57.895 6.72 0.00 40.92 3.02
3512 4056 0.747283 GTCTGGGCCATCTGCTTCAG 60.747 60.000 6.72 0.00 40.22 3.02
3513 4057 1.203441 TCTGGGCCATCTGCTTCAGT 61.203 55.000 6.72 0.00 39.99 3.41
3514 4058 0.747283 CTGGGCCATCTGCTTCAGTC 60.747 60.000 6.72 0.00 40.92 3.51
3515 4059 1.300963 GGGCCATCTGCTTCAGTCA 59.699 57.895 4.39 0.00 40.92 3.41
3516 4060 1.028868 GGGCCATCTGCTTCAGTCAC 61.029 60.000 4.39 0.00 40.92 3.67
3517 4061 0.321919 GGCCATCTGCTTCAGTCACA 60.322 55.000 0.00 0.00 40.92 3.58
3518 4062 1.527034 GCCATCTGCTTCAGTCACAA 58.473 50.000 0.00 0.00 36.87 3.33
3519 4063 1.198637 GCCATCTGCTTCAGTCACAAC 59.801 52.381 0.00 0.00 36.87 3.32
3520 4064 2.775890 CCATCTGCTTCAGTCACAACT 58.224 47.619 0.00 0.00 35.60 3.16
3521 4065 2.740981 CCATCTGCTTCAGTCACAACTC 59.259 50.000 0.00 0.00 31.71 3.01
3522 4066 2.140065 TCTGCTTCAGTCACAACTCG 57.860 50.000 0.00 0.00 31.71 4.18
3523 4067 1.409064 TCTGCTTCAGTCACAACTCGT 59.591 47.619 0.00 0.00 31.71 4.18
3525 4069 1.134818 TGCTTCAGTCACAACTCGTGT 60.135 47.619 0.00 0.00 46.44 4.49
3533 4077 3.405464 CAACTCGTGTGTTGCGGT 58.595 55.556 2.31 0.00 40.40 5.68
3534 4078 1.011242 CAACTCGTGTGTTGCGGTG 60.011 57.895 2.31 0.00 40.40 4.94
3535 4079 1.448893 AACTCGTGTGTTGCGGTGT 60.449 52.632 0.00 0.00 0.00 4.16
3536 4080 1.426041 AACTCGTGTGTTGCGGTGTC 61.426 55.000 0.00 0.00 0.00 3.67
3537 4081 2.927618 CTCGTGTGTTGCGGTGTCG 61.928 63.158 0.00 0.00 39.81 4.35
3538 4082 2.957489 CGTGTGTTGCGGTGTCGA 60.957 61.111 0.00 0.00 39.00 4.20
3539 4083 2.307309 CGTGTGTTGCGGTGTCGAT 61.307 57.895 0.00 0.00 39.00 3.59
3540 4084 1.491563 GTGTGTTGCGGTGTCGATC 59.508 57.895 0.00 0.00 39.00 3.69
3541 4085 0.944311 GTGTGTTGCGGTGTCGATCT 60.944 55.000 0.00 0.00 39.00 2.75
3542 4086 0.599060 TGTGTTGCGGTGTCGATCTA 59.401 50.000 0.00 0.00 39.00 1.98
3543 4087 1.000052 TGTGTTGCGGTGTCGATCTAA 60.000 47.619 0.00 0.00 39.00 2.10
3544 4088 2.063266 GTGTTGCGGTGTCGATCTAAA 58.937 47.619 0.00 0.00 39.00 1.85
3545 4089 2.671396 GTGTTGCGGTGTCGATCTAAAT 59.329 45.455 0.00 0.00 39.00 1.40
3546 4090 3.124636 GTGTTGCGGTGTCGATCTAAATT 59.875 43.478 0.00 0.00 39.00 1.82
3547 4091 4.327898 GTGTTGCGGTGTCGATCTAAATTA 59.672 41.667 0.00 0.00 39.00 1.40
3548 4092 4.565166 TGTTGCGGTGTCGATCTAAATTAG 59.435 41.667 0.00 0.00 39.00 1.73
3549 4093 4.642445 TGCGGTGTCGATCTAAATTAGA 57.358 40.909 5.07 5.07 39.00 2.10
3550 4094 5.001237 TGCGGTGTCGATCTAAATTAGAA 57.999 39.130 6.82 0.00 39.00 2.10
3551 4095 5.597806 TGCGGTGTCGATCTAAATTAGAAT 58.402 37.500 6.82 0.00 39.00 2.40
3552 4096 6.741109 TGCGGTGTCGATCTAAATTAGAATA 58.259 36.000 6.82 0.00 39.00 1.75
3553 4097 6.639686 TGCGGTGTCGATCTAAATTAGAATAC 59.360 38.462 6.82 6.36 39.00 1.89
3554 4098 6.089150 GCGGTGTCGATCTAAATTAGAATACC 59.911 42.308 6.82 7.71 39.00 2.73
3555 4099 7.368833 CGGTGTCGATCTAAATTAGAATACCT 58.631 38.462 6.82 0.00 38.50 3.08
3556 4100 7.326305 CGGTGTCGATCTAAATTAGAATACCTG 59.674 40.741 6.82 2.88 38.50 4.00
3557 4101 7.116519 GGTGTCGATCTAAATTAGAATACCTGC 59.883 40.741 6.82 0.00 38.50 4.85
3558 4102 7.116519 GTGTCGATCTAAATTAGAATACCTGCC 59.883 40.741 6.82 0.00 38.50 4.85
3559 4103 7.152645 GTCGATCTAAATTAGAATACCTGCCA 58.847 38.462 6.82 0.00 38.50 4.92
3560 4104 7.329717 GTCGATCTAAATTAGAATACCTGCCAG 59.670 40.741 6.82 0.00 38.50 4.85
3561 4105 7.015292 TCGATCTAAATTAGAATACCTGCCAGT 59.985 37.037 6.82 0.00 38.50 4.00
3562 4106 7.657761 CGATCTAAATTAGAATACCTGCCAGTT 59.342 37.037 6.82 0.00 38.50 3.16
3563 4107 8.910351 ATCTAAATTAGAATACCTGCCAGTTC 57.090 34.615 6.82 0.00 38.50 3.01
3564 4108 7.280356 TCTAAATTAGAATACCTGCCAGTTCC 58.720 38.462 0.00 0.00 0.00 3.62
3565 4109 5.717119 AATTAGAATACCTGCCAGTTCCT 57.283 39.130 0.00 0.00 0.00 3.36
3566 4110 6.824958 AATTAGAATACCTGCCAGTTCCTA 57.175 37.500 0.00 0.00 0.00 2.94
3567 4111 7.394144 AATTAGAATACCTGCCAGTTCCTAT 57.606 36.000 0.00 0.00 0.00 2.57
3568 4112 4.696479 AGAATACCTGCCAGTTCCTATG 57.304 45.455 0.00 0.00 0.00 2.23
3569 4113 4.040755 AGAATACCTGCCAGTTCCTATGT 58.959 43.478 0.00 0.00 0.00 2.29
3570 4114 4.475016 AGAATACCTGCCAGTTCCTATGTT 59.525 41.667 0.00 0.00 0.00 2.71
3571 4115 2.789409 ACCTGCCAGTTCCTATGTTC 57.211 50.000 0.00 0.00 0.00 3.18
3572 4116 2.269940 ACCTGCCAGTTCCTATGTTCT 58.730 47.619 0.00 0.00 0.00 3.01
3573 4117 3.450904 ACCTGCCAGTTCCTATGTTCTA 58.549 45.455 0.00 0.00 0.00 2.10
3574 4118 3.197983 ACCTGCCAGTTCCTATGTTCTAC 59.802 47.826 0.00 0.00 0.00 2.59
3575 4119 3.452627 CCTGCCAGTTCCTATGTTCTACT 59.547 47.826 0.00 0.00 0.00 2.57
3576 4120 4.437239 CTGCCAGTTCCTATGTTCTACTG 58.563 47.826 0.00 0.00 36.77 2.74
3595 4139 9.613428 TTCTACTGGAACAATTACTGGATTATG 57.387 33.333 0.00 0.00 38.70 1.90
3596 4140 8.988060 TCTACTGGAACAATTACTGGATTATGA 58.012 33.333 0.00 0.00 38.70 2.15
3597 4141 9.265901 CTACTGGAACAATTACTGGATTATGAG 57.734 37.037 0.00 0.00 38.70 2.90
3598 4142 7.056635 ACTGGAACAATTACTGGATTATGAGG 58.943 38.462 0.00 0.00 38.70 3.86
3599 4143 6.969043 TGGAACAATTACTGGATTATGAGGT 58.031 36.000 0.00 0.00 31.92 3.85
3600 4144 6.828273 TGGAACAATTACTGGATTATGAGGTG 59.172 38.462 0.00 0.00 31.92 4.00
3601 4145 7.054124 GGAACAATTACTGGATTATGAGGTGA 58.946 38.462 0.00 0.00 0.00 4.02
3602 4146 7.227512 GGAACAATTACTGGATTATGAGGTGAG 59.772 40.741 0.00 0.00 0.00 3.51
3603 4147 7.437713 ACAATTACTGGATTATGAGGTGAGA 57.562 36.000 0.00 0.00 0.00 3.27
3604 4148 7.861629 ACAATTACTGGATTATGAGGTGAGAA 58.138 34.615 0.00 0.00 0.00 2.87
3605 4149 7.770897 ACAATTACTGGATTATGAGGTGAGAAC 59.229 37.037 0.00 0.00 0.00 3.01
3606 4150 4.762289 ACTGGATTATGAGGTGAGAACC 57.238 45.455 0.00 0.00 0.00 3.62
3607 4151 3.133003 ACTGGATTATGAGGTGAGAACCG 59.867 47.826 0.00 0.00 34.28 4.44
3608 4152 3.104512 TGGATTATGAGGTGAGAACCGT 58.895 45.455 0.00 0.00 34.28 4.83
3609 4153 3.132289 TGGATTATGAGGTGAGAACCGTC 59.868 47.826 0.00 0.00 34.28 4.79
3610 4154 3.385111 GGATTATGAGGTGAGAACCGTCT 59.615 47.826 0.00 0.00 36.55 4.18
3611 4155 4.141914 GGATTATGAGGTGAGAACCGTCTT 60.142 45.833 0.00 0.00 32.80 3.01
3612 4156 2.751166 ATGAGGTGAGAACCGTCTTG 57.249 50.000 0.00 0.00 32.80 3.02
3613 4157 0.033504 TGAGGTGAGAACCGTCTTGC 59.966 55.000 0.00 0.00 32.80 4.01
3614 4158 0.033504 GAGGTGAGAACCGTCTTGCA 59.966 55.000 0.00 0.00 32.80 4.08
3615 4159 0.034059 AGGTGAGAACCGTCTTGCAG 59.966 55.000 0.00 0.00 32.80 4.41
3616 4160 1.569479 GGTGAGAACCGTCTTGCAGC 61.569 60.000 0.00 0.00 32.80 5.25
3617 4161 0.880278 GTGAGAACCGTCTTGCAGCA 60.880 55.000 0.00 0.00 32.80 4.41
3618 4162 0.179059 TGAGAACCGTCTTGCAGCAA 60.179 50.000 7.81 7.81 32.80 3.91
3619 4163 0.235926 GAGAACCGTCTTGCAGCAAC 59.764 55.000 2.83 0.00 32.80 4.17
3620 4164 1.082756 GAACCGTCTTGCAGCAACG 60.083 57.895 11.94 11.94 36.22 4.10
3621 4165 1.495584 GAACCGTCTTGCAGCAACGA 61.496 55.000 19.12 11.24 38.65 3.85
3622 4166 0.884704 AACCGTCTTGCAGCAACGAT 60.885 50.000 19.12 0.61 38.65 3.73
3623 4167 1.291877 ACCGTCTTGCAGCAACGATC 61.292 55.000 19.12 8.37 38.65 3.69
3624 4168 1.057822 CGTCTTGCAGCAACGATCG 59.942 57.895 14.88 14.88 38.65 3.69
3625 4169 1.225854 GTCTTGCAGCAACGATCGC 60.226 57.895 16.60 0.00 0.00 4.58
3626 4170 1.667510 TCTTGCAGCAACGATCGCA 60.668 52.632 16.60 0.01 0.00 5.10
3627 4171 1.510623 CTTGCAGCAACGATCGCAC 60.511 57.895 16.60 4.64 33.29 5.34
3628 4172 3.293872 TTGCAGCAACGATCGCACG 62.294 57.895 16.60 4.74 33.29 5.34
3629 4173 3.478394 GCAGCAACGATCGCACGA 61.478 61.111 16.60 0.00 37.03 4.35
3630 4174 2.802667 GCAGCAACGATCGCACGAT 61.803 57.895 16.60 5.01 37.59 3.73
3631 4175 1.270968 CAGCAACGATCGCACGATC 59.729 57.895 20.33 20.33 45.42 3.69
3632 4176 1.139734 AGCAACGATCGCACGATCT 59.860 52.632 25.45 13.20 46.36 2.75
3633 4177 1.142185 AGCAACGATCGCACGATCTG 61.142 55.000 25.45 19.74 46.36 2.90
3634 4178 1.139816 GCAACGATCGCACGATCTGA 61.140 55.000 25.45 0.00 46.36 3.27
3635 4179 1.268265 CAACGATCGCACGATCTGAA 58.732 50.000 25.45 0.00 46.36 3.02
3636 4180 1.253800 CAACGATCGCACGATCTGAAG 59.746 52.381 25.45 15.05 46.36 3.02
3637 4181 0.248661 ACGATCGCACGATCTGAAGG 60.249 55.000 25.45 14.75 46.36 3.46
3638 4182 1.543941 CGATCGCACGATCTGAAGGC 61.544 60.000 25.45 4.00 46.36 4.35
3639 4183 0.528466 GATCGCACGATCTGAAGGCA 60.528 55.000 22.34 0.00 45.42 4.75
3640 4184 0.105593 ATCGCACGATCTGAAGGCAT 59.894 50.000 0.00 0.00 0.00 4.40
3641 4185 0.528466 TCGCACGATCTGAAGGCATC 60.528 55.000 0.00 0.00 0.00 3.91
3642 4186 0.807275 CGCACGATCTGAAGGCATCA 60.807 55.000 0.00 0.00 36.38 3.07
3643 4187 1.590932 GCACGATCTGAAGGCATCAT 58.409 50.000 0.00 0.00 37.44 2.45
3644 4188 1.945394 GCACGATCTGAAGGCATCATT 59.055 47.619 0.00 0.00 37.44 2.57
3645 4189 2.286831 GCACGATCTGAAGGCATCATTG 60.287 50.000 0.00 0.00 37.44 2.82
3656 4200 2.077155 GCATCATTGCGTACGAAGTG 57.923 50.000 21.65 16.60 39.76 3.16
3657 4201 1.852077 GCATCATTGCGTACGAAGTGC 60.852 52.381 21.65 13.61 39.76 4.40
3658 4202 1.393196 CATCATTGCGTACGAAGTGCA 59.607 47.619 21.65 3.51 45.55 4.57
3659 4203 1.720805 TCATTGCGTACGAAGTGCAT 58.279 45.000 21.65 0.00 45.55 3.96
3660 4204 2.882324 TCATTGCGTACGAAGTGCATA 58.118 42.857 21.65 0.00 45.55 3.14
3661 4205 3.453424 TCATTGCGTACGAAGTGCATAT 58.547 40.909 21.65 0.00 45.55 1.78
3662 4206 3.245048 TCATTGCGTACGAAGTGCATATG 59.755 43.478 21.65 8.26 45.55 1.78
3663 4207 0.927537 TGCGTACGAAGTGCATATGC 59.072 50.000 21.65 21.09 45.55 3.14
3675 4219 2.526304 GCATATGCACTAGACCGGAA 57.474 50.000 22.84 0.00 41.59 4.30
3676 4220 2.135933 GCATATGCACTAGACCGGAAC 58.864 52.381 22.84 0.99 41.59 3.62
3677 4221 2.224066 GCATATGCACTAGACCGGAACT 60.224 50.000 22.84 9.99 41.59 3.01
3678 4222 3.643763 CATATGCACTAGACCGGAACTC 58.356 50.000 9.46 0.00 0.00 3.01
3679 4223 0.824759 ATGCACTAGACCGGAACTCC 59.175 55.000 9.46 0.00 0.00 3.85
3742 4286 4.332637 GTGCCAGCCGTGCAAGTG 62.333 66.667 0.00 0.00 41.06 3.16
3789 4333 7.856145 ATCTAATCCTGACTAAAAACAGCAG 57.144 36.000 0.00 0.00 33.40 4.24
3790 4334 7.004555 TCTAATCCTGACTAAAAACAGCAGA 57.995 36.000 0.00 0.00 33.40 4.26
3793 4337 5.036117 TCCTGACTAAAAACAGCAGAAGT 57.964 39.130 0.00 0.00 33.40 3.01
3808 4352 8.261492 ACAGCAGAAGTTGAGTATTTATCTTG 57.739 34.615 0.00 0.00 0.00 3.02
3828 4372 6.100004 TCTTGACTAAAAATAGCAGGAGTCG 58.900 40.000 0.00 0.00 36.86 4.18
3832 4376 3.334583 AAAAATAGCAGGAGTCGAGCA 57.665 42.857 7.98 0.00 0.00 4.26
3843 4387 4.452455 CAGGAGTCGAGCACAAAGTAAAAT 59.548 41.667 0.00 0.00 0.00 1.82
3849 4393 7.672738 AGTCGAGCACAAAGTAAAATTATACG 58.327 34.615 0.00 0.00 0.00 3.06
3885 4429 1.876156 GCAGGGCATATAGTTCAGTGC 59.124 52.381 0.00 0.00 36.88 4.40
3899 4447 5.288015 AGTTCAGTGCGATAGAGATGAATG 58.712 41.667 0.00 0.00 35.55 2.67
3904 4452 5.175308 CAGTGCGATAGAGATGAATGTTGAG 59.825 44.000 0.00 0.00 39.76 3.02
3911 4459 7.436376 CGATAGAGATGAATGTTGAGCAAGTAA 59.564 37.037 0.00 0.00 39.76 2.24
3912 4460 9.102757 GATAGAGATGAATGTTGAGCAAGTAAA 57.897 33.333 0.00 0.00 0.00 2.01
3913 4461 7.138692 AGAGATGAATGTTGAGCAAGTAAAC 57.861 36.000 0.00 0.00 0.00 2.01
3914 4462 6.150140 AGAGATGAATGTTGAGCAAGTAAACC 59.850 38.462 0.00 0.00 0.00 3.27
3915 4463 5.769662 AGATGAATGTTGAGCAAGTAAACCA 59.230 36.000 0.00 0.00 0.00 3.67
3916 4464 5.181690 TGAATGTTGAGCAAGTAAACCAC 57.818 39.130 0.00 0.00 0.00 4.16
3917 4465 4.642437 TGAATGTTGAGCAAGTAAACCACA 59.358 37.500 0.00 0.00 0.00 4.17
3918 4466 5.301551 TGAATGTTGAGCAAGTAAACCACAT 59.698 36.000 0.00 0.00 0.00 3.21
3919 4467 6.488344 TGAATGTTGAGCAAGTAAACCACATA 59.512 34.615 0.00 0.00 0.00 2.29
3920 4468 5.682943 TGTTGAGCAAGTAAACCACATAC 57.317 39.130 0.00 0.00 0.00 2.39
3921 4469 5.126779 TGTTGAGCAAGTAAACCACATACA 58.873 37.500 0.00 0.00 0.00 2.29
3922 4470 5.238432 TGTTGAGCAAGTAAACCACATACAG 59.762 40.000 0.00 0.00 0.00 2.74
3923 4471 4.323417 TGAGCAAGTAAACCACATACAGG 58.677 43.478 0.00 0.00 0.00 4.00
3924 4472 3.686016 AGCAAGTAAACCACATACAGGG 58.314 45.455 0.00 0.00 0.00 4.45
3930 4478 3.799432 AAACCACATACAGGGCTAACA 57.201 42.857 0.00 0.00 0.00 2.41
3931 4479 3.350219 AACCACATACAGGGCTAACAG 57.650 47.619 0.00 0.00 0.00 3.16
3958 4506 7.330208 GGACTGCCATTTTTCATATTATGCATC 59.670 37.037 0.19 0.00 0.00 3.91
3959 4507 7.728148 ACTGCCATTTTTCATATTATGCATCA 58.272 30.769 0.19 0.00 0.00 3.07
3960 4508 8.372459 ACTGCCATTTTTCATATTATGCATCAT 58.628 29.630 0.19 0.00 0.00 2.45
3961 4509 9.214957 CTGCCATTTTTCATATTATGCATCATT 57.785 29.630 0.19 0.00 0.00 2.57
3962 4510 9.562408 TGCCATTTTTCATATTATGCATCATTT 57.438 25.926 0.19 0.00 0.00 2.32
3989 4537 4.256920 GCAAGATCACATTCAGTGGTAGT 58.743 43.478 0.00 0.00 43.05 2.73
3994 4542 6.299141 AGATCACATTCAGTGGTAGTTGTTT 58.701 36.000 0.00 0.00 43.05 2.83
3998 4546 6.427150 CACATTCAGTGGTAGTTGTTTGTAC 58.573 40.000 0.00 0.00 44.69 2.90
4003 4551 7.633193 TCAGTGGTAGTTGTTTGTACAAAAT 57.367 32.000 22.14 11.25 45.33 1.82
4007 4555 6.754675 GTGGTAGTTGTTTGTACAAAATGCTT 59.245 34.615 22.14 9.97 45.33 3.91
4012 4560 4.541779 TGTTTGTACAAAATGCTTAGGCG 58.458 39.130 22.14 0.00 35.00 5.52
4066 4621 1.679153 GCAAAAGGTGAACCCTCGAAA 59.321 47.619 0.00 0.00 45.47 3.46
4067 4622 2.296190 GCAAAAGGTGAACCCTCGAAAT 59.704 45.455 0.00 0.00 45.47 2.17
4068 4623 3.504520 GCAAAAGGTGAACCCTCGAAATA 59.495 43.478 0.00 0.00 45.47 1.40
4069 4624 4.379499 GCAAAAGGTGAACCCTCGAAATAG 60.379 45.833 0.00 0.00 45.47 1.73
4070 4625 3.629142 AAGGTGAACCCTCGAAATAGG 57.371 47.619 0.00 0.00 45.47 2.57
4097 4869 2.829206 CGCAAGGGACACGCAACAA 61.829 57.895 0.00 0.00 0.00 2.83
4112 4884 6.803320 ACACGCAACAAGATCATTTTCATAAG 59.197 34.615 0.00 0.00 0.00 1.73
4113 4885 5.801947 ACGCAACAAGATCATTTTCATAAGC 59.198 36.000 0.00 0.00 0.00 3.09
4116 4888 7.256286 GCAACAAGATCATTTTCATAAGCTCT 58.744 34.615 0.00 0.00 0.00 4.09
4120 4892 9.852091 ACAAGATCATTTTCATAAGCTCTTTTC 57.148 29.630 0.00 0.00 0.00 2.29
4121 4893 9.850628 CAAGATCATTTTCATAAGCTCTTTTCA 57.149 29.630 0.00 0.00 0.00 2.69
4161 4933 2.673862 TGTGAAATACGGCGGTACATTG 59.326 45.455 13.24 0.00 0.00 2.82
4208 4980 4.191544 TGGAATTCTTAAGCACAGATCCG 58.808 43.478 5.23 0.00 0.00 4.18
4220 4992 3.364964 GCACAGATCCGTTACAAACCAAG 60.365 47.826 0.00 0.00 0.00 3.61
4292 5064 3.071479 TGGACGGCAAAATAGAACACTC 58.929 45.455 0.00 0.00 0.00 3.51
4311 5083 3.181465 ACTCCATTATAAGTGACAGGGCG 60.181 47.826 0.00 0.00 0.00 6.13
4316 5088 2.981859 ATAAGTGACAGGGCGTAAGG 57.018 50.000 0.00 0.00 38.28 2.69
4328 5100 0.373716 GCGTAAGGAAAGCGATGGTG 59.626 55.000 0.00 0.00 38.28 4.17
4357 5152 1.202222 CGAAGCACCAATCCATCAAGC 60.202 52.381 0.00 0.00 0.00 4.01
4369 5164 2.027745 TCCATCAAGCCAGTGTTCTCTC 60.028 50.000 0.00 0.00 0.00 3.20
4383 5178 1.897560 TCTCTCGAACTCTGCACTGA 58.102 50.000 0.00 0.00 0.00 3.41
4397 5192 4.763279 TCTGCACTGAACATGACATGATTT 59.237 37.500 22.19 6.71 0.00 2.17
4408 5203 5.924254 ACATGACATGATTTTGCAGAAACAG 59.076 36.000 22.19 1.88 0.00 3.16
4417 5212 6.702723 TGATTTTGCAGAAACAGAATTCCAAG 59.297 34.615 0.65 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.539929 CCCAGCTAGTATCACTGCAGC 60.540 57.143 15.27 0.00 0.00 5.25
276 283 1.826054 CGCACCACCCACCAGAAAA 60.826 57.895 0.00 0.00 0.00 2.29
480 509 6.603997 TGTGGGACATAGCCGTTTTTAATAAT 59.396 34.615 0.00 0.00 44.52 1.28
2649 2902 3.442625 TCGAATTAGGCTTCTTCGTCTGA 59.557 43.478 22.29 7.99 41.74 3.27
2651 2904 3.181485 CCTCGAATTAGGCTTCTTCGTCT 60.181 47.826 22.29 0.00 41.74 4.18
2652 2905 3.117046 CCTCGAATTAGGCTTCTTCGTC 58.883 50.000 22.29 2.06 41.74 4.20
2658 2911 5.639931 GGATATTGTCCTCGAATTAGGCTTC 59.360 44.000 0.00 0.00 44.16 3.86
2676 2929 1.208535 TCGCCAACGGTGAAGGATATT 59.791 47.619 0.00 0.00 39.45 1.28
2706 2959 2.103771 GCCATTCTCTCTAGCCATCACA 59.896 50.000 0.00 0.00 0.00 3.58
2709 2962 2.028203 GGAGCCATTCTCTCTAGCCATC 60.028 54.545 0.00 0.00 41.60 3.51
2715 2968 1.115930 GCGGGGAGCCATTCTCTCTA 61.116 60.000 0.00 0.00 42.13 2.43
2739 2992 1.555075 AGAGCCTGGAAATAGTGCGAA 59.445 47.619 0.00 0.00 0.00 4.70
2746 2999 4.021368 GCCGTAGATAAGAGCCTGGAAATA 60.021 45.833 0.00 0.00 0.00 1.40
2747 3000 3.244249 GCCGTAGATAAGAGCCTGGAAAT 60.244 47.826 0.00 0.00 0.00 2.17
2757 3010 2.558286 CGGGCGGCCGTAGATAAGA 61.558 63.158 39.30 0.00 0.00 2.10
2774 3027 4.785453 GGTGGAGGAAGCCAGGCG 62.785 72.222 5.55 0.00 38.95 5.52
2778 3031 4.649705 TCCGGGTGGAGGAAGCCA 62.650 66.667 0.00 0.00 40.17 4.75
2793 3046 4.767255 CGCCAGTGCCAGTCCTCC 62.767 72.222 0.00 0.00 0.00 4.30
2819 3072 2.079925 GAAAATCGAAGTCAGGCTGCT 58.920 47.619 10.34 7.65 0.00 4.24
2827 3080 3.120649 CCGTTGTCAGGAAAATCGAAGTC 60.121 47.826 0.00 0.00 0.00 3.01
2828 3081 2.806244 CCGTTGTCAGGAAAATCGAAGT 59.194 45.455 0.00 0.00 0.00 3.01
2855 3108 2.281484 GCTTGTGGTTGCTCGGGA 60.281 61.111 0.00 0.00 0.00 5.14
2864 3404 3.488423 CCTCTCCTGGCTTGTGGT 58.512 61.111 0.00 0.00 0.00 4.16
2895 3435 1.227823 CGTGAAGGCACTGAACCCA 60.228 57.895 0.00 0.00 42.93 4.51
2897 3437 1.227853 ACCGTGAAGGCACTGAACC 60.228 57.895 0.00 0.00 46.52 3.62
2899 3439 0.753867 TACACCGTGAAGGCACTGAA 59.246 50.000 5.28 0.00 46.52 3.02
2909 3449 2.159170 TGCGAATCATCATACACCGTGA 60.159 45.455 5.28 0.00 0.00 4.35
2919 3459 3.070590 ACATCCAGATCTGCGAATCATCA 59.929 43.478 17.76 0.00 0.00 3.07
2921 3461 3.556633 GGACATCCAGATCTGCGAATCAT 60.557 47.826 17.76 3.99 35.64 2.45
2952 3492 2.299297 GTTGTAGGAGTATATGCCCGCT 59.701 50.000 0.00 0.00 0.00 5.52
2955 3495 3.554337 CCGTGTTGTAGGAGTATATGCCC 60.554 52.174 0.00 0.00 0.00 5.36
2959 3499 5.067413 CACTCACCGTGTTGTAGGAGTATAT 59.933 44.000 0.00 0.00 38.84 0.86
2982 3522 3.177884 ACCTTGCTCCAGGTGCCA 61.178 61.111 11.07 0.00 46.22 4.92
2987 3527 2.496899 AACATGTACCTTGCTCCAGG 57.503 50.000 0.00 0.00 40.23 4.45
2988 3528 3.438087 CAGAAACATGTACCTTGCTCCAG 59.562 47.826 0.00 0.00 0.00 3.86
2999 3539 1.634757 CGGCAGCGCAGAAACATGTA 61.635 55.000 11.47 0.00 0.00 2.29
3000 3540 2.956987 GGCAGCGCAGAAACATGT 59.043 55.556 11.47 0.00 0.00 3.21
3001 3541 2.202388 CGGCAGCGCAGAAACATG 60.202 61.111 11.47 0.00 0.00 3.21
3003 3543 2.892334 GAACGGCAGCGCAGAAACA 61.892 57.895 11.47 0.00 0.00 2.83
3005 3545 2.590291 TGAACGGCAGCGCAGAAA 60.590 55.556 11.47 0.00 0.00 2.52
3006 3546 3.043713 CTGAACGGCAGCGCAGAA 61.044 61.111 11.47 0.00 37.90 3.02
3030 3570 0.108756 GTTCAGGGACGTACTCAGCC 60.109 60.000 0.00 0.00 0.00 4.85
3033 3573 1.548719 CCATGTTCAGGGACGTACTCA 59.451 52.381 0.00 0.00 0.00 3.41
3048 3588 1.607467 GCCAAACCAGAGGCCATGT 60.607 57.895 5.01 0.00 45.18 3.21
3078 3618 1.886253 ATGCACAGAGCTGCTCGTCT 61.886 55.000 22.77 3.98 45.94 4.18
3080 3620 1.447489 GATGCACAGAGCTGCTCGT 60.447 57.895 22.77 19.65 45.94 4.18
3097 3637 2.283173 TGCCTGAGCGAGGTCAGA 60.283 61.111 27.65 10.84 46.02 3.27
3122 3662 1.993701 TTCCCACACCTTCTGCAGCA 61.994 55.000 9.47 0.00 0.00 4.41
3161 3701 1.745489 GACGCCATCAGGGAACACC 60.745 63.158 0.00 0.00 40.01 4.16
3173 3713 2.265739 GCAGGATGTGAGACGCCA 59.734 61.111 0.00 0.00 39.31 5.69
3180 3720 2.350895 CCCAACGGCAGGATGTGA 59.649 61.111 0.00 0.00 39.31 3.58
3228 3768 1.675641 CCCCCGCTCTGTTTTCTGG 60.676 63.158 0.00 0.00 0.00 3.86
3245 3785 1.376037 CCTGAAGGGTGAAGCGTCC 60.376 63.158 0.00 0.00 0.00 4.79
3247 3787 1.192146 TAGCCTGAAGGGTGAAGCGT 61.192 55.000 11.32 0.00 46.80 5.07
3248 3788 0.741221 GTAGCCTGAAGGGTGAAGCG 60.741 60.000 11.32 0.00 46.80 4.68
3253 3793 0.400213 TTGGTGTAGCCTGAAGGGTG 59.600 55.000 11.32 0.00 46.80 4.61
3255 3795 1.826385 CTTTGGTGTAGCCTGAAGGG 58.174 55.000 0.00 0.00 38.35 3.95
3258 3798 0.605319 CCGCTTTGGTGTAGCCTGAA 60.605 55.000 0.00 0.00 38.35 3.02
3263 3803 1.671054 TGCTCCGCTTTGGTGTAGC 60.671 57.895 0.00 0.00 39.52 3.58
3270 3810 2.174349 GCGAAGTGCTCCGCTTTG 59.826 61.111 0.00 2.21 46.96 2.77
3276 3816 0.038159 ACAGTACTGCGAAGTGCTCC 60.038 55.000 22.90 0.00 46.63 4.70
3280 3820 1.000163 ACCAGACAGTACTGCGAAGTG 60.000 52.381 22.90 12.12 36.67 3.16
3281 3821 1.000163 CACCAGACAGTACTGCGAAGT 60.000 52.381 22.90 12.43 36.67 3.01
3285 3825 0.729478 CGACACCAGACAGTACTGCG 60.729 60.000 22.90 11.38 36.67 5.18
3291 3831 1.120530 AAACCTCGACACCAGACAGT 58.879 50.000 0.00 0.00 0.00 3.55
3294 3834 2.135933 CTGAAAACCTCGACACCAGAC 58.864 52.381 0.00 0.00 0.00 3.51
3297 3837 1.540363 GCTCTGAAAACCTCGACACCA 60.540 52.381 0.00 0.00 0.00 4.17
3300 3840 1.270305 CCAGCTCTGAAAACCTCGACA 60.270 52.381 0.00 0.00 0.00 4.35
3303 3843 0.603707 TGCCAGCTCTGAAAACCTCG 60.604 55.000 0.00 0.00 0.00 4.63
3307 3847 1.405105 TGTGTTGCCAGCTCTGAAAAC 59.595 47.619 0.00 3.63 0.00 2.43
3312 3852 0.035317 TACCTGTGTTGCCAGCTCTG 59.965 55.000 0.00 0.00 0.00 3.35
3315 3855 1.302832 GCTACCTGTGTTGCCAGCT 60.303 57.895 0.00 0.00 37.27 4.24
3323 3863 1.306642 CGTCTCGAGGCTACCTGTGT 61.307 60.000 16.21 0.00 31.76 3.72
3330 3870 0.663688 GCTTGATCGTCTCGAGGCTA 59.336 55.000 16.21 4.20 39.91 3.93
3337 3877 1.996191 GGACTTGTGCTTGATCGTCTC 59.004 52.381 0.00 0.00 0.00 3.36
3341 3881 2.662791 CGTTTGGACTTGTGCTTGATCG 60.663 50.000 0.00 0.00 0.00 3.69
3376 3916 6.058553 TCAGATCAGTTTGACCTCATCATT 57.941 37.500 0.00 0.00 37.11 2.57
3419 3960 7.807977 TGCATCTAAAAGAGGATAAATCACC 57.192 36.000 0.00 0.00 0.00 4.02
3421 3962 9.685276 TTCTTGCATCTAAAAGAGGATAAATCA 57.315 29.630 0.00 0.00 34.09 2.57
3422 3963 9.943163 GTTCTTGCATCTAAAAGAGGATAAATC 57.057 33.333 0.00 0.00 34.09 2.17
3424 3965 8.862325 TGTTCTTGCATCTAAAAGAGGATAAA 57.138 30.769 0.00 0.00 34.09 1.40
3425 3966 8.862325 TTGTTCTTGCATCTAAAAGAGGATAA 57.138 30.769 0.00 0.00 34.09 1.75
3428 3969 6.998074 TCTTTGTTCTTGCATCTAAAAGAGGA 59.002 34.615 7.58 0.00 34.09 3.71
3429 3970 7.040823 AGTCTTTGTTCTTGCATCTAAAAGAGG 60.041 37.037 10.55 0.00 34.01 3.69
3432 3976 9.766277 GATAGTCTTTGTTCTTGCATCTAAAAG 57.234 33.333 0.00 0.00 0.00 2.27
3455 3999 9.772973 ACAATAACTGCAGGATAAAATACGATA 57.227 29.630 19.93 0.00 0.00 2.92
3458 4002 9.221775 GAAACAATAACTGCAGGATAAAATACG 57.778 33.333 19.93 0.00 0.00 3.06
3459 4003 9.221775 CGAAACAATAACTGCAGGATAAAATAC 57.778 33.333 19.93 2.35 0.00 1.89
3469 4013 6.855914 ACATTACAACGAAACAATAACTGCAG 59.144 34.615 13.48 13.48 0.00 4.41
3477 4021 4.320935 GCCCAGACATTACAACGAAACAAT 60.321 41.667 0.00 0.00 0.00 2.71
3478 4022 3.003897 GCCCAGACATTACAACGAAACAA 59.996 43.478 0.00 0.00 0.00 2.83
3479 4023 2.550606 GCCCAGACATTACAACGAAACA 59.449 45.455 0.00 0.00 0.00 2.83
3480 4024 2.095415 GGCCCAGACATTACAACGAAAC 60.095 50.000 0.00 0.00 0.00 2.78
3481 4025 2.156098 GGCCCAGACATTACAACGAAA 58.844 47.619 0.00 0.00 0.00 3.46
3482 4026 1.072489 TGGCCCAGACATTACAACGAA 59.928 47.619 0.00 0.00 0.00 3.85
3483 4027 0.687920 TGGCCCAGACATTACAACGA 59.312 50.000 0.00 0.00 0.00 3.85
3484 4028 1.670811 GATGGCCCAGACATTACAACG 59.329 52.381 0.00 0.00 27.61 4.10
3485 4029 2.684881 CAGATGGCCCAGACATTACAAC 59.315 50.000 0.00 0.00 27.61 3.32
3486 4030 2.945440 GCAGATGGCCCAGACATTACAA 60.945 50.000 0.00 0.00 27.61 2.41
3487 4031 1.408683 GCAGATGGCCCAGACATTACA 60.409 52.381 0.00 0.00 27.61 2.41
3488 4032 1.133976 AGCAGATGGCCCAGACATTAC 60.134 52.381 0.00 0.00 46.50 1.89
3489 4033 1.216064 AGCAGATGGCCCAGACATTA 58.784 50.000 0.00 0.00 46.50 1.90
3490 4034 0.333993 AAGCAGATGGCCCAGACATT 59.666 50.000 0.00 0.00 46.50 2.71
3491 4035 0.106819 GAAGCAGATGGCCCAGACAT 60.107 55.000 0.00 0.00 46.50 3.06
3492 4036 1.300963 GAAGCAGATGGCCCAGACA 59.699 57.895 0.00 0.00 46.50 3.41
3493 4037 0.747283 CTGAAGCAGATGGCCCAGAC 60.747 60.000 0.00 0.00 46.50 3.51
3494 4038 1.203441 ACTGAAGCAGATGGCCCAGA 61.203 55.000 0.00 0.00 46.50 3.86
3495 4039 0.747283 GACTGAAGCAGATGGCCCAG 60.747 60.000 0.00 0.00 46.50 4.45
3496 4040 1.300963 GACTGAAGCAGATGGCCCA 59.699 57.895 0.00 0.00 46.50 5.36
3497 4041 1.028868 GTGACTGAAGCAGATGGCCC 61.029 60.000 0.00 0.00 46.50 5.80
3498 4042 0.321919 TGTGACTGAAGCAGATGGCC 60.322 55.000 0.00 0.00 46.50 5.36
3499 4043 1.198637 GTTGTGACTGAAGCAGATGGC 59.801 52.381 0.82 0.00 45.30 4.40
3500 4044 2.740981 GAGTTGTGACTGAAGCAGATGG 59.259 50.000 0.82 0.00 35.88 3.51
3501 4045 2.411069 CGAGTTGTGACTGAAGCAGATG 59.589 50.000 0.82 0.00 35.88 2.90
3502 4046 2.036475 ACGAGTTGTGACTGAAGCAGAT 59.964 45.455 0.82 0.00 35.88 2.90
3503 4047 1.409064 ACGAGTTGTGACTGAAGCAGA 59.591 47.619 0.82 0.00 35.88 4.26
3504 4048 1.858091 ACGAGTTGTGACTGAAGCAG 58.142 50.000 0.00 0.00 35.88 4.24
3517 4061 1.426041 GACACCGCAACACACGAGTT 61.426 55.000 0.00 0.00 0.00 3.01
3518 4062 1.881252 GACACCGCAACACACGAGT 60.881 57.895 0.00 0.00 0.00 4.18
3519 4063 2.927618 CGACACCGCAACACACGAG 61.928 63.158 0.00 0.00 0.00 4.18
3520 4064 2.686956 ATCGACACCGCAACACACGA 62.687 55.000 0.00 0.00 35.37 4.35
3521 4065 2.210524 GATCGACACCGCAACACACG 62.211 60.000 0.00 0.00 35.37 4.49
3522 4066 0.944311 AGATCGACACCGCAACACAC 60.944 55.000 0.00 0.00 35.37 3.82
3523 4067 0.599060 TAGATCGACACCGCAACACA 59.401 50.000 0.00 0.00 35.37 3.72
3524 4068 1.705256 TTAGATCGACACCGCAACAC 58.295 50.000 0.00 0.00 35.37 3.32
3525 4069 2.442212 TTTAGATCGACACCGCAACA 57.558 45.000 0.00 0.00 35.37 3.33
3526 4070 4.802039 TCTAATTTAGATCGACACCGCAAC 59.198 41.667 1.90 0.00 35.37 4.17
3527 4071 5.001237 TCTAATTTAGATCGACACCGCAA 57.999 39.130 1.90 0.00 35.37 4.85
3528 4072 4.642445 TCTAATTTAGATCGACACCGCA 57.358 40.909 1.90 0.00 35.37 5.69
3529 4073 6.089150 GGTATTCTAATTTAGATCGACACCGC 59.911 42.308 6.95 0.00 34.22 5.68
3530 4074 7.326305 CAGGTATTCTAATTTAGATCGACACCG 59.674 40.741 6.95 4.51 34.22 4.94
3531 4075 7.116519 GCAGGTATTCTAATTTAGATCGACACC 59.883 40.741 6.95 9.52 34.22 4.16
3532 4076 7.116519 GGCAGGTATTCTAATTTAGATCGACAC 59.883 40.741 6.95 2.23 34.22 3.67
3533 4077 7.152645 GGCAGGTATTCTAATTTAGATCGACA 58.847 38.462 6.95 0.00 34.22 4.35
3534 4078 7.152645 TGGCAGGTATTCTAATTTAGATCGAC 58.847 38.462 6.95 5.86 34.22 4.20
3535 4079 7.015292 ACTGGCAGGTATTCTAATTTAGATCGA 59.985 37.037 20.34 0.00 34.22 3.59
3536 4080 7.155328 ACTGGCAGGTATTCTAATTTAGATCG 58.845 38.462 20.34 0.00 34.22 3.69
3537 4081 8.910351 AACTGGCAGGTATTCTAATTTAGATC 57.090 34.615 20.34 2.21 34.22 2.75
3538 4082 7.939588 GGAACTGGCAGGTATTCTAATTTAGAT 59.060 37.037 20.34 1.45 34.22 1.98
3539 4083 7.127339 AGGAACTGGCAGGTATTCTAATTTAGA 59.873 37.037 20.34 1.90 37.18 2.10
3540 4084 7.283329 AGGAACTGGCAGGTATTCTAATTTAG 58.717 38.462 20.34 0.00 37.18 1.85
3541 4085 7.208064 AGGAACTGGCAGGTATTCTAATTTA 57.792 36.000 20.34 0.00 37.18 1.40
3542 4086 6.079712 AGGAACTGGCAGGTATTCTAATTT 57.920 37.500 20.34 0.00 37.18 1.82
3543 4087 5.717119 AGGAACTGGCAGGTATTCTAATT 57.283 39.130 20.34 0.00 37.18 1.40
3544 4088 6.330250 ACATAGGAACTGGCAGGTATTCTAAT 59.670 38.462 20.34 8.37 41.52 1.73
3545 4089 5.665812 ACATAGGAACTGGCAGGTATTCTAA 59.334 40.000 20.34 6.55 41.52 2.10
3546 4090 5.216622 ACATAGGAACTGGCAGGTATTCTA 58.783 41.667 20.34 14.63 41.52 2.10
3547 4091 4.040755 ACATAGGAACTGGCAGGTATTCT 58.959 43.478 20.34 12.92 41.52 2.40
3548 4092 4.423625 ACATAGGAACTGGCAGGTATTC 57.576 45.455 20.34 13.15 41.52 1.75
3549 4093 4.475016 AGAACATAGGAACTGGCAGGTATT 59.525 41.667 20.34 6.48 41.52 1.89
3550 4094 4.040755 AGAACATAGGAACTGGCAGGTAT 58.959 43.478 20.34 7.24 41.52 2.73
3551 4095 3.450904 AGAACATAGGAACTGGCAGGTA 58.549 45.455 20.34 5.09 41.52 3.08
3552 4096 2.269940 AGAACATAGGAACTGGCAGGT 58.730 47.619 20.34 13.55 41.52 4.00
3553 4097 3.452627 AGTAGAACATAGGAACTGGCAGG 59.547 47.826 20.34 0.96 41.52 4.85
3554 4098 4.437239 CAGTAGAACATAGGAACTGGCAG 58.563 47.826 14.16 14.16 41.52 4.85
3555 4099 4.471904 CAGTAGAACATAGGAACTGGCA 57.528 45.455 0.00 0.00 41.52 4.92
3569 4113 9.613428 CATAATCCAGTAATTGTTCCAGTAGAA 57.387 33.333 0.00 0.00 0.00 2.10
3570 4114 8.988060 TCATAATCCAGTAATTGTTCCAGTAGA 58.012 33.333 0.00 0.00 0.00 2.59
3571 4115 9.265901 CTCATAATCCAGTAATTGTTCCAGTAG 57.734 37.037 0.00 0.00 0.00 2.57
3572 4116 8.210946 CCTCATAATCCAGTAATTGTTCCAGTA 58.789 37.037 0.00 0.00 0.00 2.74
3573 4117 7.056635 CCTCATAATCCAGTAATTGTTCCAGT 58.943 38.462 0.00 0.00 0.00 4.00
3574 4118 7.012704 CACCTCATAATCCAGTAATTGTTCCAG 59.987 40.741 0.00 0.00 0.00 3.86
3575 4119 6.828273 CACCTCATAATCCAGTAATTGTTCCA 59.172 38.462 0.00 0.00 0.00 3.53
3576 4120 7.054124 TCACCTCATAATCCAGTAATTGTTCC 58.946 38.462 0.00 0.00 0.00 3.62
3577 4121 7.987458 TCTCACCTCATAATCCAGTAATTGTTC 59.013 37.037 0.00 0.00 0.00 3.18
3578 4122 7.861629 TCTCACCTCATAATCCAGTAATTGTT 58.138 34.615 0.00 0.00 0.00 2.83
3579 4123 7.437713 TCTCACCTCATAATCCAGTAATTGT 57.562 36.000 0.00 0.00 0.00 2.71
3580 4124 7.227512 GGTTCTCACCTCATAATCCAGTAATTG 59.772 40.741 0.00 0.00 40.44 2.32
3581 4125 7.283329 GGTTCTCACCTCATAATCCAGTAATT 58.717 38.462 0.00 0.00 40.44 1.40
3582 4126 6.463049 CGGTTCTCACCTCATAATCCAGTAAT 60.463 42.308 0.00 0.00 41.64 1.89
3583 4127 5.163447 CGGTTCTCACCTCATAATCCAGTAA 60.163 44.000 0.00 0.00 41.64 2.24
3584 4128 4.341235 CGGTTCTCACCTCATAATCCAGTA 59.659 45.833 0.00 0.00 41.64 2.74
3585 4129 3.133003 CGGTTCTCACCTCATAATCCAGT 59.867 47.826 0.00 0.00 41.64 4.00
3586 4130 3.133003 ACGGTTCTCACCTCATAATCCAG 59.867 47.826 0.00 0.00 41.64 3.86
3587 4131 3.104512 ACGGTTCTCACCTCATAATCCA 58.895 45.455 0.00 0.00 41.64 3.41
3588 4132 3.385111 AGACGGTTCTCACCTCATAATCC 59.615 47.826 0.00 0.00 41.64 3.01
3589 4133 4.657436 AGACGGTTCTCACCTCATAATC 57.343 45.455 0.00 0.00 41.64 1.75
3590 4134 4.759782 CAAGACGGTTCTCACCTCATAAT 58.240 43.478 0.00 0.00 41.64 1.28
3591 4135 3.616560 GCAAGACGGTTCTCACCTCATAA 60.617 47.826 0.00 0.00 41.64 1.90
3592 4136 2.094182 GCAAGACGGTTCTCACCTCATA 60.094 50.000 0.00 0.00 41.64 2.15
3593 4137 1.338200 GCAAGACGGTTCTCACCTCAT 60.338 52.381 0.00 0.00 41.64 2.90
3594 4138 0.033504 GCAAGACGGTTCTCACCTCA 59.966 55.000 0.00 0.00 41.64 3.86
3595 4139 0.033504 TGCAAGACGGTTCTCACCTC 59.966 55.000 0.00 0.00 41.64 3.85
3596 4140 0.034059 CTGCAAGACGGTTCTCACCT 59.966 55.000 0.00 0.00 37.16 4.00
3597 4141 1.569479 GCTGCAAGACGGTTCTCACC 61.569 60.000 0.00 0.00 36.17 4.02
3598 4142 0.880278 TGCTGCAAGACGGTTCTCAC 60.880 55.000 0.00 0.00 34.07 3.51
3599 4143 0.179059 TTGCTGCAAGACGGTTCTCA 60.179 50.000 11.69 0.00 34.07 3.27
3600 4144 0.235926 GTTGCTGCAAGACGGTTCTC 59.764 55.000 16.53 0.00 34.07 2.87
3601 4145 1.498865 CGTTGCTGCAAGACGGTTCT 61.499 55.000 16.53 0.00 34.07 3.01
3602 4146 1.082756 CGTTGCTGCAAGACGGTTC 60.083 57.895 16.53 0.92 34.07 3.62
3603 4147 0.884704 ATCGTTGCTGCAAGACGGTT 60.885 50.000 22.18 10.82 37.39 4.44
3604 4148 1.291877 GATCGTTGCTGCAAGACGGT 61.292 55.000 22.18 17.60 37.39 4.83
3605 4149 1.421485 GATCGTTGCTGCAAGACGG 59.579 57.895 22.18 10.57 37.39 4.79
3606 4150 1.057822 CGATCGTTGCTGCAAGACG 59.942 57.895 16.53 17.42 34.07 4.18
3607 4151 1.225854 GCGATCGTTGCTGCAAGAC 60.226 57.895 16.53 4.73 34.07 3.01
3608 4152 1.667510 TGCGATCGTTGCTGCAAGA 60.668 52.632 16.53 14.95 34.07 3.02
3609 4153 1.510623 GTGCGATCGTTGCTGCAAG 60.511 57.895 16.53 10.09 39.34 4.01
3610 4154 2.555782 GTGCGATCGTTGCTGCAA 59.444 55.556 17.81 11.69 39.34 4.08
3611 4155 3.776849 CGTGCGATCGTTGCTGCA 61.777 61.111 17.81 0.00 34.44 4.41
3612 4156 2.671345 GATCGTGCGATCGTTGCTGC 62.671 60.000 17.81 0.00 41.09 5.25
3613 4157 1.270968 GATCGTGCGATCGTTGCTG 59.729 57.895 17.81 2.95 41.09 4.41
3614 4158 3.693245 GATCGTGCGATCGTTGCT 58.307 55.556 17.81 0.00 41.09 3.91
3621 4165 0.105593 ATGCCTTCAGATCGTGCGAT 59.894 50.000 6.80 6.80 37.59 4.58
3622 4166 0.528466 GATGCCTTCAGATCGTGCGA 60.528 55.000 0.00 0.00 0.00 5.10
3623 4167 0.807275 TGATGCCTTCAGATCGTGCG 60.807 55.000 0.00 0.00 0.00 5.34
3624 4168 1.590932 ATGATGCCTTCAGATCGTGC 58.409 50.000 0.00 0.00 37.89 5.34
3625 4169 3.604065 CAATGATGCCTTCAGATCGTG 57.396 47.619 0.00 0.00 37.89 4.35
3638 4182 1.393196 TGCACTTCGTACGCAATGATG 59.607 47.619 11.24 4.09 31.46 3.07
3639 4183 1.720805 TGCACTTCGTACGCAATGAT 58.279 45.000 11.24 0.00 31.46 2.45
3640 4184 1.720805 ATGCACTTCGTACGCAATGA 58.279 45.000 11.24 0.00 39.48 2.57
3641 4185 3.534889 CATATGCACTTCGTACGCAATG 58.465 45.455 11.24 0.00 39.48 2.82
3642 4186 2.032894 GCATATGCACTTCGTACGCAAT 60.033 45.455 22.84 0.00 39.48 3.56
3643 4187 1.326245 GCATATGCACTTCGTACGCAA 59.674 47.619 22.84 5.23 39.48 4.85
3644 4188 0.927537 GCATATGCACTTCGTACGCA 59.072 50.000 22.84 2.16 41.59 5.24
3645 4189 3.710233 GCATATGCACTTCGTACGC 57.290 52.632 22.84 0.00 41.59 4.42
3656 4200 2.135933 GTTCCGGTCTAGTGCATATGC 58.864 52.381 21.09 21.09 42.50 3.14
3657 4201 3.553096 GGAGTTCCGGTCTAGTGCATATG 60.553 52.174 0.00 0.00 0.00 1.78
3658 4202 2.628657 GGAGTTCCGGTCTAGTGCATAT 59.371 50.000 0.00 0.00 0.00 1.78
3659 4203 2.029623 GGAGTTCCGGTCTAGTGCATA 58.970 52.381 0.00 0.00 0.00 3.14
3660 4204 0.824759 GGAGTTCCGGTCTAGTGCAT 59.175 55.000 0.00 0.00 0.00 3.96
3661 4205 2.273908 GGAGTTCCGGTCTAGTGCA 58.726 57.895 0.00 0.00 0.00 4.57
3699 4243 1.064952 CTTGGTCACACCGTTTGAACC 59.935 52.381 0.29 1.00 42.58 3.62
3700 4244 1.533129 GCTTGGTCACACCGTTTGAAC 60.533 52.381 0.00 0.00 42.58 3.18
3702 4246 1.433053 CGCTTGGTCACACCGTTTGA 61.433 55.000 0.00 0.00 42.58 2.69
3725 4269 4.332637 CACTTGCACGGCTGGCAC 62.333 66.667 8.04 0.00 41.75 5.01
3733 4277 2.686558 AAACATGCTACACTTGCACG 57.313 45.000 0.00 0.00 43.59 5.34
3737 4281 7.184800 TGTACAACTAAACATGCTACACTTG 57.815 36.000 0.00 0.00 0.00 3.16
3769 4313 6.064717 ACTTCTGCTGTTTTTAGTCAGGATT 58.935 36.000 0.00 0.00 32.19 3.01
3784 4328 8.386606 GTCAAGATAAATACTCAACTTCTGCTG 58.613 37.037 0.00 0.00 0.00 4.41
3808 4352 4.504826 GCTCGACTCCTGCTATTTTTAGTC 59.495 45.833 0.00 0.00 0.00 2.59
3820 4364 2.724977 TACTTTGTGCTCGACTCCTG 57.275 50.000 0.00 0.00 0.00 3.86
3828 4372 6.782150 AGCCGTATAATTTTACTTTGTGCTC 58.218 36.000 4.81 0.00 0.00 4.26
3832 4376 9.567848 CAATCAAGCCGTATAATTTTACTTTGT 57.432 29.630 4.81 0.00 0.00 2.83
3843 4387 5.645929 TGCTTCTTTCAATCAAGCCGTATAA 59.354 36.000 0.66 0.00 41.64 0.98
3849 4393 2.094338 CCCTGCTTCTTTCAATCAAGCC 60.094 50.000 0.66 0.00 41.64 4.35
3885 4429 5.752472 ACTTGCTCAACATTCATCTCTATCG 59.248 40.000 0.00 0.00 0.00 2.92
3899 4447 5.334879 CCTGTATGTGGTTTACTTGCTCAAC 60.335 44.000 0.00 0.00 0.00 3.18
3904 4452 2.163613 GCCCTGTATGTGGTTTACTTGC 59.836 50.000 0.00 0.00 0.00 4.01
3911 4459 2.026262 CCTGTTAGCCCTGTATGTGGTT 60.026 50.000 0.00 0.00 0.00 3.67
3912 4460 1.559682 CCTGTTAGCCCTGTATGTGGT 59.440 52.381 0.00 0.00 0.00 4.16
3913 4461 1.134098 CCCTGTTAGCCCTGTATGTGG 60.134 57.143 0.00 0.00 0.00 4.17
3914 4462 1.837439 TCCCTGTTAGCCCTGTATGTG 59.163 52.381 0.00 0.00 0.00 3.21
3915 4463 1.838077 GTCCCTGTTAGCCCTGTATGT 59.162 52.381 0.00 0.00 0.00 2.29
3916 4464 2.119495 AGTCCCTGTTAGCCCTGTATG 58.881 52.381 0.00 0.00 0.00 2.39
3917 4465 2.119495 CAGTCCCTGTTAGCCCTGTAT 58.881 52.381 0.00 0.00 0.00 2.29
3918 4466 1.568504 CAGTCCCTGTTAGCCCTGTA 58.431 55.000 0.00 0.00 0.00 2.74
3919 4467 1.842381 GCAGTCCCTGTTAGCCCTGT 61.842 60.000 0.00 0.00 33.43 4.00
3920 4468 1.078143 GCAGTCCCTGTTAGCCCTG 60.078 63.158 0.00 0.00 33.43 4.45
3921 4469 2.301738 GGCAGTCCCTGTTAGCCCT 61.302 63.158 0.00 0.00 39.42 5.19
3922 4470 1.926426 ATGGCAGTCCCTGTTAGCCC 61.926 60.000 0.00 0.00 44.60 5.19
3923 4471 0.034089 AATGGCAGTCCCTGTTAGCC 60.034 55.000 0.00 0.00 45.41 3.93
3924 4472 1.839424 AAATGGCAGTCCCTGTTAGC 58.161 50.000 0.00 0.00 33.43 3.09
3930 4478 6.239402 GCATAATATGAAAAATGGCAGTCCCT 60.239 38.462 4.14 0.00 0.00 4.20
3931 4479 5.928264 GCATAATATGAAAAATGGCAGTCCC 59.072 40.000 4.14 0.00 0.00 4.46
3958 4506 6.811665 ACTGAATGTGATCTTGCATCAAAATG 59.188 34.615 0.00 0.00 35.87 2.32
3959 4507 6.931838 ACTGAATGTGATCTTGCATCAAAAT 58.068 32.000 0.00 0.00 0.00 1.82
3960 4508 6.335471 ACTGAATGTGATCTTGCATCAAAA 57.665 33.333 0.00 0.00 0.00 2.44
3961 4509 5.970317 ACTGAATGTGATCTTGCATCAAA 57.030 34.783 0.00 0.00 0.00 2.69
3973 4521 8.063364 TGTACAAACAACTACCACTGAATGTGA 61.063 37.037 0.00 0.00 39.83 3.58
3974 4522 5.499139 ACAAACAACTACCACTGAATGTG 57.501 39.130 0.00 0.00 45.80 3.21
3989 4537 4.979197 CGCCTAAGCATTTTGTACAAACAA 59.021 37.500 20.43 7.84 40.70 2.83
3994 4542 3.403968 TGACGCCTAAGCATTTTGTACA 58.596 40.909 0.00 0.00 39.83 2.90
3998 4546 3.637432 TGTTTGACGCCTAAGCATTTTG 58.363 40.909 0.00 0.00 39.83 2.44
4003 4551 1.961793 AACTGTTTGACGCCTAAGCA 58.038 45.000 0.00 0.00 39.83 3.91
4007 4555 4.130857 TCATGAAAACTGTTTGACGCCTA 58.869 39.130 6.53 0.00 0.00 3.93
4012 4560 7.115378 CCTTATGCTTCATGAAAACTGTTTGAC 59.885 37.037 9.88 5.32 0.00 3.18
4059 4614 3.116300 CGTGTGTGATCCTATTTCGAGG 58.884 50.000 0.00 0.00 38.03 4.63
4066 4621 1.134401 CCCTTGCGTGTGTGATCCTAT 60.134 52.381 0.00 0.00 0.00 2.57
4067 4622 0.249120 CCCTTGCGTGTGTGATCCTA 59.751 55.000 0.00 0.00 0.00 2.94
4068 4623 1.003355 CCCTTGCGTGTGTGATCCT 60.003 57.895 0.00 0.00 0.00 3.24
4069 4624 1.003839 TCCCTTGCGTGTGTGATCC 60.004 57.895 0.00 0.00 0.00 3.36
4070 4625 0.602638 TGTCCCTTGCGTGTGTGATC 60.603 55.000 0.00 0.00 0.00 2.92
4090 4862 6.032094 AGCTTATGAAAATGATCTTGTTGCG 58.968 36.000 0.00 0.00 0.00 4.85
4119 4891 8.972662 TCACAGGGAGATTAAGGATATTATGA 57.027 34.615 0.00 0.00 0.00 2.15
4124 4896 8.314751 CGTATTTCACAGGGAGATTAAGGATAT 58.685 37.037 0.00 0.00 0.00 1.63
4125 4897 7.256190 CCGTATTTCACAGGGAGATTAAGGATA 60.256 40.741 0.00 0.00 0.00 2.59
4126 4898 6.464465 CCGTATTTCACAGGGAGATTAAGGAT 60.464 42.308 0.00 0.00 0.00 3.24
4127 4899 5.163343 CCGTATTTCACAGGGAGATTAAGGA 60.163 44.000 0.00 0.00 0.00 3.36
4128 4900 5.057149 CCGTATTTCACAGGGAGATTAAGG 58.943 45.833 0.00 0.00 0.00 2.69
4129 4901 4.511826 GCCGTATTTCACAGGGAGATTAAG 59.488 45.833 0.00 0.00 0.00 1.85
4130 4902 4.448210 GCCGTATTTCACAGGGAGATTAA 58.552 43.478 0.00 0.00 0.00 1.40
4131 4903 3.491964 CGCCGTATTTCACAGGGAGATTA 60.492 47.826 0.00 0.00 0.00 1.75
4132 4904 2.741878 CGCCGTATTTCACAGGGAGATT 60.742 50.000 0.00 0.00 0.00 2.40
4133 4905 1.202533 CGCCGTATTTCACAGGGAGAT 60.203 52.381 0.00 0.00 0.00 2.75
4137 4909 0.176219 TACCGCCGTATTTCACAGGG 59.824 55.000 0.00 0.00 0.00 4.45
4161 4933 3.723835 CGTTTAGCCGTGTGTTGCTTATC 60.724 47.826 0.00 0.00 39.00 1.75
4208 4980 9.303537 CTCTATAGTTAGAGCTTGGTTTGTAAC 57.696 37.037 0.00 0.00 43.70 2.50
4249 5021 6.790461 TCCATGGCTGACCTTACCTTATTATA 59.210 38.462 6.96 0.00 36.63 0.98
4292 5064 3.194005 ACGCCCTGTCACTTATAATGG 57.806 47.619 0.00 0.00 0.00 3.16
4311 5083 2.396590 TCCACCATCGCTTTCCTTAC 57.603 50.000 0.00 0.00 0.00 2.34
4316 5088 2.545946 GCTTCTATCCACCATCGCTTTC 59.454 50.000 0.00 0.00 0.00 2.62
4328 5100 2.024176 TTGGTGCTTCGCTTCTATCC 57.976 50.000 0.00 0.00 0.00 2.59
4369 5164 2.156504 GTCATGTTCAGTGCAGAGTTCG 59.843 50.000 0.00 0.00 0.00 3.95
4374 5169 3.405823 TCATGTCATGTTCAGTGCAGA 57.594 42.857 12.54 0.00 0.00 4.26
4383 5178 6.282167 TGTTTCTGCAAAATCATGTCATGTT 58.718 32.000 12.54 1.55 0.00 2.71
4397 5192 4.214310 TCCTTGGAATTCTGTTTCTGCAA 58.786 39.130 5.23 0.00 0.00 4.08
4408 5203 8.090214 TGTCATTTTGATTTCTCCTTGGAATTC 58.910 33.333 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.