Multiple sequence alignment - TraesCS2A01G113000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G113000 chr2A 100.000 7455 0 0 959 8413 63817074 63824528 0.000000e+00 13767.0
1 TraesCS2A01G113000 chr2A 96.357 1098 40 0 3646 4743 8448216 8447119 0.000000e+00 1807.0
2 TraesCS2A01G113000 chr2A 100.000 545 0 0 1 545 63816116 63816660 0.000000e+00 1007.0
3 TraesCS2A01G113000 chr2A 96.186 603 20 3 4854 5456 615257926 615258525 0.000000e+00 983.0
4 TraesCS2A01G113000 chr2A 92.409 606 43 1 4854 5456 12142672 12142067 0.000000e+00 861.0
5 TraesCS2A01G113000 chr2A 97.605 167 4 0 5456 5622 8415924 8415758 3.840000e-73 287.0
6 TraesCS2A01G113000 chr2A 94.286 175 4 3 6344 6512 423846069 423846243 6.480000e-66 263.0
7 TraesCS2A01G113000 chr2A 99.145 117 0 1 4737 4853 8416031 8415916 8.560000e-50 209.0
8 TraesCS2A01G113000 chr2B 94.741 2472 77 22 1144 3600 98356317 98358750 0.000000e+00 3795.0
9 TraesCS2A01G113000 chr2B 94.067 2343 83 18 5645 7971 98358767 98361069 0.000000e+00 3506.0
10 TraesCS2A01G113000 chr2B 92.727 605 41 3 4852 5456 249325990 249326591 0.000000e+00 870.0
11 TraesCS2A01G113000 chr2B 91.860 86 7 0 18 103 98355525 98355610 4.120000e-23 121.0
12 TraesCS2A01G113000 chr2B 92.500 80 6 0 8334 8413 98361450 98361529 1.920000e-21 115.0
13 TraesCS2A01G113000 chr3A 97.292 1994 48 4 3636 5629 671701551 671703538 0.000000e+00 3378.0
14 TraesCS2A01G113000 chr2D 89.915 2717 135 44 1001 3645 62950813 62953462 0.000000e+00 3371.0
15 TraesCS2A01G113000 chr2D 94.286 1295 44 10 6517 7806 62954195 62955464 0.000000e+00 1954.0
16 TraesCS2A01G113000 chr2D 96.211 739 18 9 5618 6350 62953454 62954188 0.000000e+00 1201.0
17 TraesCS2A01G113000 chr2D 90.612 245 8 9 260 492 62950269 62950510 2.280000e-80 311.0
18 TraesCS2A01G113000 chr2D 88.889 171 11 5 7796 7966 62955862 62956024 3.980000e-48 204.0
19 TraesCS2A01G113000 chr2D 82.278 158 16 8 4249 4398 601647290 601647137 8.870000e-25 126.0
20 TraesCS2A01G113000 chr2D 93.902 82 5 0 17 98 62949801 62949882 3.190000e-24 124.0
21 TraesCS2A01G113000 chr2D 77.778 189 29 10 3796 3978 28778700 28778881 4.150000e-18 104.0
22 TraesCS2A01G113000 chr2D 91.781 73 6 0 3974 4046 593360974 593360902 1.490000e-17 102.0
23 TraesCS2A01G113000 chr2D 90.476 63 6 0 3988 4050 601647602 601647540 5.410000e-12 84.2
24 TraesCS2A01G113000 chr4A 92.508 614 39 2 4851 5457 313643328 313643941 0.000000e+00 872.0
25 TraesCS2A01G113000 chr4A 77.289 546 82 21 3646 4176 708237829 708238347 4.970000e-72 283.0
26 TraesCS2A01G113000 chr4A 93.296 179 4 5 6346 6517 231287827 231287650 3.010000e-64 257.0
27 TraesCS2A01G113000 chr4A 90.385 52 5 0 6538 6589 729430467 729430416 1.520000e-07 69.4
28 TraesCS2A01G113000 chr6D 92.471 611 39 3 4852 5456 397666749 397666140 0.000000e+00 867.0
29 TraesCS2A01G113000 chr6D 82.397 267 44 3 6523 6789 123124111 123123848 6.570000e-56 230.0
30 TraesCS2A01G113000 chr6D 82.667 150 14 7 4249 4390 438422956 438422811 1.150000e-23 122.0
31 TraesCS2A01G113000 chr6D 90.476 63 6 0 3988 4050 438423242 438423180 5.410000e-12 84.2
32 TraesCS2A01G113000 chr3D 92.345 614 39 4 4852 5457 573156164 573155551 0.000000e+00 867.0
33 TraesCS2A01G113000 chr5D 92.282 609 41 2 4853 5456 437472474 437471867 0.000000e+00 859.0
34 TraesCS2A01G113000 chr5D 84.921 126 18 1 3646 3770 372040625 372040500 8.870000e-25 126.0
35 TraesCS2A01G113000 chr5D 82.243 107 18 1 3647 3752 369029262 369029368 3.230000e-14 91.6
36 TraesCS2A01G113000 chr5B 92.105 608 48 0 4851 5458 679111305 679111912 0.000000e+00 857.0
37 TraesCS2A01G113000 chr5B 84.987 393 48 8 3646 4038 677752015 677751634 1.020000e-103 388.0
38 TraesCS2A01G113000 chr5B 75.000 768 127 41 3646 4388 26854578 26853851 2.300000e-75 294.0
39 TraesCS2A01G113000 chr1D 75.867 663 90 34 3768 4388 427928368 427927734 2.990000e-69 274.0
40 TraesCS2A01G113000 chr7A 93.889 180 4 4 6345 6518 630034515 630034337 1.800000e-66 265.0
41 TraesCS2A01G113000 chr7A 92.105 190 6 8 6352 6534 721921154 721920967 8.380000e-65 259.0
42 TraesCS2A01G113000 chr7A 86.916 107 14 0 5512 5618 105359944 105360050 4.120000e-23 121.0
43 TraesCS2A01G113000 chr1A 93.889 180 4 4 6351 6524 137410073 137409895 1.800000e-66 265.0
44 TraesCS2A01G113000 chr4B 92.188 192 6 6 6351 6535 413121366 413121177 6.480000e-66 263.0
45 TraesCS2A01G113000 chr4B 84.091 264 35 6 6523 6786 362143976 362144232 1.810000e-61 248.0
46 TraesCS2A01G113000 chr4B 83.333 144 15 7 4257 4395 630581809 630581948 3.190000e-24 124.0
47 TraesCS2A01G113000 chr4B 87.013 77 10 0 6529 6605 666798449 666798525 4.180000e-13 87.9
48 TraesCS2A01G113000 chr7B 92.935 184 5 5 6344 6521 220990617 220990798 2.330000e-65 261.0
49 TraesCS2A01G113000 chr7B 90.452 199 12 4 6351 6543 575367874 575368071 1.080000e-63 255.0
50 TraesCS2A01G113000 chr7B 87.692 65 8 0 5456 5520 735814742 735814678 9.060000e-10 76.8
51 TraesCS2A01G113000 chr5A 80.576 278 36 8 6522 6785 354964047 354964320 1.850000e-46 198.0
52 TraesCS2A01G113000 chr5A 88.889 99 11 0 5512 5610 695394334 695394432 1.150000e-23 122.0
53 TraesCS2A01G113000 chr5A 88.889 99 11 0 5512 5610 695419703 695419801 1.150000e-23 122.0
54 TraesCS2A01G113000 chr5A 87.879 99 12 0 5512 5610 695342756 695342854 5.340000e-22 117.0
55 TraesCS2A01G113000 chr6A 80.769 208 29 8 6580 6786 3327376 3327573 1.460000e-32 152.0
56 TraesCS2A01G113000 chr6A 88.793 116 13 0 5503 5618 448192756 448192641 8.800000e-30 143.0
57 TraesCS2A01G113000 chr6A 81.290 155 17 7 4249 4395 609640847 609640997 1.920000e-21 115.0
58 TraesCS2A01G113000 chr6A 86.765 68 9 0 6523 6590 611304757 611304690 9.060000e-10 76.8
59 TraesCS2A01G113000 chr6B 79.688 192 28 9 3796 3983 480664818 480664634 2.460000e-25 128.0
60 TraesCS2A01G113000 chr6B 85.075 67 10 0 6523 6589 469782919 469782853 1.520000e-07 69.4
61 TraesCS2A01G113000 chrUn 88.889 99 11 0 5512 5610 277494504 277494406 1.150000e-23 122.0
62 TraesCS2A01G113000 chrUn 86.111 108 14 1 3646 3752 9918608 9918501 1.920000e-21 115.0
63 TraesCS2A01G113000 chrUn 81.013 158 18 7 4249 4398 32064446 32064293 1.920000e-21 115.0
64 TraesCS2A01G113000 chr7D 85.455 110 12 2 5515 5624 408722291 408722396 2.480000e-20 111.0
65 TraesCS2A01G113000 chr3B 80.357 112 14 7 6526 6630 726775150 726775040 2.520000e-10 78.7
66 TraesCS2A01G113000 chr4D 86.275 51 5 2 6736 6785 396400801 396400850 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G113000 chr2A 63816116 63824528 8412 False 7387.000000 13767 100.0000 1 8413 2 chr2A.!!$F3 8412
1 TraesCS2A01G113000 chr2A 8447119 8448216 1097 True 1807.000000 1807 96.3570 3646 4743 1 chr2A.!!$R1 1097
2 TraesCS2A01G113000 chr2A 615257926 615258525 599 False 983.000000 983 96.1860 4854 5456 1 chr2A.!!$F2 602
3 TraesCS2A01G113000 chr2A 12142067 12142672 605 True 861.000000 861 92.4090 4854 5456 1 chr2A.!!$R2 602
4 TraesCS2A01G113000 chr2B 98355525 98361529 6004 False 1884.250000 3795 93.2920 18 8413 4 chr2B.!!$F2 8395
5 TraesCS2A01G113000 chr2B 249325990 249326591 601 False 870.000000 870 92.7270 4852 5456 1 chr2B.!!$F1 604
6 TraesCS2A01G113000 chr3A 671701551 671703538 1987 False 3378.000000 3378 97.2920 3636 5629 1 chr3A.!!$F1 1993
7 TraesCS2A01G113000 chr2D 62949801 62956024 6223 False 1194.166667 3371 92.3025 17 7966 6 chr2D.!!$F2 7949
8 TraesCS2A01G113000 chr4A 313643328 313643941 613 False 872.000000 872 92.5080 4851 5457 1 chr4A.!!$F1 606
9 TraesCS2A01G113000 chr4A 708237829 708238347 518 False 283.000000 283 77.2890 3646 4176 1 chr4A.!!$F2 530
10 TraesCS2A01G113000 chr6D 397666140 397666749 609 True 867.000000 867 92.4710 4852 5456 1 chr6D.!!$R2 604
11 TraesCS2A01G113000 chr3D 573155551 573156164 613 True 867.000000 867 92.3450 4852 5457 1 chr3D.!!$R1 605
12 TraesCS2A01G113000 chr5D 437471867 437472474 607 True 859.000000 859 92.2820 4853 5456 1 chr5D.!!$R2 603
13 TraesCS2A01G113000 chr5B 679111305 679111912 607 False 857.000000 857 92.1050 4851 5458 1 chr5B.!!$F1 607
14 TraesCS2A01G113000 chr5B 26853851 26854578 727 True 294.000000 294 75.0000 3646 4388 1 chr5B.!!$R1 742
15 TraesCS2A01G113000 chr1D 427927734 427928368 634 True 274.000000 274 75.8670 3768 4388 1 chr1D.!!$R1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 753 0.104197 ATCAATCCCTCTCCCCCTCC 60.104 60.000 0.00 0.0 0.00 4.30 F
1110 1361 0.456221 AGATCCACTACGTCGCCAAG 59.544 55.000 0.00 0.0 0.00 3.61 F
1560 1838 0.261991 AGGCCGAGTTGAGGATAGGA 59.738 55.000 0.00 0.0 0.00 2.94 F
1561 1839 1.120530 GGCCGAGTTGAGGATAGGAA 58.879 55.000 0.00 0.0 0.00 3.36 F
1562 1840 1.202545 GGCCGAGTTGAGGATAGGAAC 60.203 57.143 0.00 0.0 0.00 3.62 F
2610 2923 1.269517 GCTACAGATGAGGAGCTTCCG 60.270 57.143 0.00 0.0 42.75 4.30 F
2863 3176 2.202756 GCTAGACGAAGCCCACGG 60.203 66.667 0.00 0.0 36.45 4.94 F
4127 4512 1.077501 CCATGCCCGAGTGGATTGT 60.078 57.895 0.00 0.0 37.72 2.71 F
4543 4964 1.073216 CTCGTCGACACACCATCTGC 61.073 60.000 17.16 0.0 0.00 4.26 F
6404 6856 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.0 38.32 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1541 1819 0.261991 TCCTATCCTCAACTCGGCCT 59.738 55.000 0.00 0.00 0.00 5.19 R
3085 3415 1.986882 AGTGGGAGGCAAGAAACAAG 58.013 50.000 0.00 0.00 0.00 3.16 R
3096 3426 6.992715 CCAAATGATTAGTTACTAGTGGGAGG 59.007 42.308 5.39 0.00 0.00 4.30 R
3241 3571 7.304497 AGGAACATACTTCAAGTGTTCTAGT 57.696 36.000 16.46 4.12 46.67 2.57 R
3563 3893 0.684535 TGGAGTCCTTGCGATCAACA 59.315 50.000 11.33 0.00 0.00 3.33 R
3757 4087 1.372087 CCACTTGCAATCGGGAGAGC 61.372 60.000 0.00 0.00 45.48 4.09 R
4477 4898 4.996434 GGTGGTGCAGCAGCTCGT 62.996 66.667 34.07 0.00 42.74 4.18 R
4954 5375 1.438651 GCACGAGGCATGTTCTACAA 58.561 50.000 0.00 0.00 43.97 2.41 R
6473 6925 0.324943 TAGAAGCTCCCACACAAGGC 59.675 55.000 0.00 0.00 0.00 4.35 R
7823 8687 0.251341 AGGGCAAACTTGGGCACTAG 60.251 55.000 0.00 0.00 43.18 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.036517 GCTCTATTGAACAATCATCTTCACGT 59.963 38.462 3.23 0.00 34.96 4.49
55 56 3.445450 TCATGAGTTCTCCTCTTCTTCGG 59.555 47.826 0.00 0.00 41.11 4.30
108 137 5.006746 GCTTGATTGAGTACCGGAGTAATTG 59.993 44.000 9.46 0.00 0.00 2.32
122 151 9.621629 ACCGGAGTAATTGAAAATATTGATACA 57.378 29.630 9.46 0.00 0.00 2.29
155 184 8.294690 ACCCCTAATTTCATAACTCCTCTACTA 58.705 37.037 0.00 0.00 0.00 1.82
179 209 3.559655 TCGTTTGTCAAACACAGATCCAG 59.440 43.478 24.40 8.16 41.44 3.86
193 223 4.097135 ACAGATCCAGTCTCATGAACGTAG 59.903 45.833 0.00 0.00 34.00 3.51
195 225 4.578516 AGATCCAGTCTCATGAACGTAGAG 59.421 45.833 0.00 0.00 28.45 2.43
254 494 9.034800 TCTACAAAAGCTCCATAATTTCCATTT 57.965 29.630 0.00 0.00 0.00 2.32
255 495 9.657419 CTACAAAAGCTCCATAATTTCCATTTT 57.343 29.630 0.00 0.00 0.00 1.82
256 496 8.922931 ACAAAAGCTCCATAATTTCCATTTTT 57.077 26.923 0.00 0.00 0.00 1.94
257 497 8.785946 ACAAAAGCTCCATAATTTCCATTTTTG 58.214 29.630 0.00 0.00 37.63 2.44
258 498 8.785946 CAAAAGCTCCATAATTTCCATTTTTGT 58.214 29.630 0.00 0.00 31.03 2.83
283 523 4.142381 ACTTTGCTGTTTTGTTCACTCCTC 60.142 41.667 0.00 0.00 0.00 3.71
286 526 2.945668 GCTGTTTTGTTCACTCCTCTGT 59.054 45.455 0.00 0.00 0.00 3.41
303 543 8.524487 ACTCCTCTGTACTACTTCACAAATTAG 58.476 37.037 0.00 0.00 0.00 1.73
306 546 9.490379 CCTCTGTACTACTTCACAAATTAGTTT 57.510 33.333 0.00 0.00 34.04 2.66
317 557 6.512297 TCACAAATTAGTTTCTTCCTTTGCC 58.488 36.000 0.00 0.00 0.00 4.52
319 559 5.602561 ACAAATTAGTTTCTTCCTTTGCCCT 59.397 36.000 0.00 0.00 0.00 5.19
320 560 6.780522 ACAAATTAGTTTCTTCCTTTGCCCTA 59.219 34.615 0.00 0.00 0.00 3.53
321 561 7.039714 ACAAATTAGTTTCTTCCTTTGCCCTAG 60.040 37.037 0.00 0.00 0.00 3.02
361 609 3.000727 CCATCTACTCCACACGGAAAAC 58.999 50.000 0.00 0.00 42.21 2.43
492 743 3.018901 GGCCACCCATCAATCCCT 58.981 61.111 0.00 0.00 0.00 4.20
493 744 1.152673 GGCCACCCATCAATCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
498 749 0.699231 ACCCATCAATCCCTCTCCCC 60.699 60.000 0.00 0.00 0.00 4.81
499 750 1.430369 CCCATCAATCCCTCTCCCCC 61.430 65.000 0.00 0.00 0.00 5.40
500 751 0.402566 CCATCAATCCCTCTCCCCCT 60.403 60.000 0.00 0.00 0.00 4.79
501 752 1.063183 CATCAATCCCTCTCCCCCTC 58.937 60.000 0.00 0.00 0.00 4.30
502 753 0.104197 ATCAATCCCTCTCCCCCTCC 60.104 60.000 0.00 0.00 0.00 4.30
503 754 1.772156 CAATCCCTCTCCCCCTCCC 60.772 68.421 0.00 0.00 0.00 4.30
504 755 3.054557 AATCCCTCTCCCCCTCCCC 62.055 68.421 0.00 0.00 0.00 4.81
534 785 4.101448 GCTCCGCCCACTCCACAT 62.101 66.667 0.00 0.00 0.00 3.21
535 786 2.187946 CTCCGCCCACTCCACATC 59.812 66.667 0.00 0.00 0.00 3.06
536 787 3.723235 CTCCGCCCACTCCACATCG 62.723 68.421 0.00 0.00 0.00 3.84
539 790 4.101448 GCCCACTCCACATCGCCT 62.101 66.667 0.00 0.00 0.00 5.52
540 791 2.187946 CCCACTCCACATCGCCTC 59.812 66.667 0.00 0.00 0.00 4.70
541 792 2.187946 CCACTCCACATCGCCTCC 59.812 66.667 0.00 0.00 0.00 4.30
542 793 2.187946 CACTCCACATCGCCTCCC 59.812 66.667 0.00 0.00 0.00 4.30
543 794 3.461773 ACTCCACATCGCCTCCCG 61.462 66.667 0.00 0.00 38.61 5.14
544 795 3.461773 CTCCACATCGCCTCCCGT 61.462 66.667 0.00 0.00 38.35 5.28
1110 1361 0.456221 AGATCCACTACGTCGCCAAG 59.544 55.000 0.00 0.00 0.00 3.61
1192 1451 2.326550 GTGTGTGTGTTTCGCCCG 59.673 61.111 0.00 0.00 0.00 6.13
1215 1474 1.009389 CGTCTGTTTGACTCCTCGCC 61.009 60.000 0.00 0.00 43.25 5.54
1249 1508 4.465512 GATGTGCGGGCGTTGCTG 62.466 66.667 0.00 0.00 0.00 4.41
1333 1592 2.043852 GTCTCCCTCGAGCTCCCA 60.044 66.667 6.99 0.00 35.94 4.37
1374 1633 3.072184 AGCATCTCTCTCTCTCTCTCTCC 59.928 52.174 0.00 0.00 0.00 3.71
1377 1636 3.736094 TCTCTCTCTCTCTCTCTCCCTT 58.264 50.000 0.00 0.00 0.00 3.95
1378 1637 3.711704 TCTCTCTCTCTCTCTCTCCCTTC 59.288 52.174 0.00 0.00 0.00 3.46
1379 1638 3.455910 CTCTCTCTCTCTCTCTCCCTTCA 59.544 52.174 0.00 0.00 0.00 3.02
1387 1664 1.750778 CTCTCTCCCTTCAGAGCTGTC 59.249 57.143 0.00 0.00 39.99 3.51
1422 1699 7.962918 CCGAATTACTTTGGAAGTGATAACTTG 59.037 37.037 0.00 0.00 42.84 3.16
1423 1700 8.504005 CGAATTACTTTGGAAGTGATAACTTGT 58.496 33.333 0.00 0.00 42.84 3.16
1426 1703 6.377327 ACTTTGGAAGTGATAACTTGTGTG 57.623 37.500 0.00 0.00 41.01 3.82
1435 1712 4.695455 GTGATAACTTGTGTGTGCCATAGT 59.305 41.667 0.00 0.00 0.00 2.12
1438 1715 3.492102 ACTTGTGTGTGCCATAGTTCT 57.508 42.857 0.00 0.00 0.00 3.01
1450 1727 2.354821 CCATAGTTCTTAAACCAGCGGC 59.645 50.000 0.00 0.00 35.92 6.53
1474 1751 0.820871 ACTCCACGAATCTGGCTCTC 59.179 55.000 0.00 0.00 0.00 3.20
1482 1759 2.352617 CGAATCTGGCTCTCAGGCTATC 60.353 54.545 0.00 0.00 43.53 2.08
1538 1816 5.128171 TGGAACTGAACAACTGTACTGTACT 59.872 40.000 17.98 0.00 0.00 2.73
1539 1817 5.462398 GGAACTGAACAACTGTACTGTACTG 59.538 44.000 19.36 19.36 0.00 2.74
1540 1818 5.593679 ACTGAACAACTGTACTGTACTGT 57.406 39.130 20.48 20.48 41.72 3.55
1541 1819 6.704289 ACTGAACAACTGTACTGTACTGTA 57.296 37.500 24.55 8.40 39.49 2.74
1542 1820 6.736123 ACTGAACAACTGTACTGTACTGTAG 58.264 40.000 24.55 20.13 39.49 2.74
1545 1823 3.257624 ACAACTGTACTGTACTGTAGGCC 59.742 47.826 24.55 0.00 39.49 5.19
1560 1838 0.261991 AGGCCGAGTTGAGGATAGGA 59.738 55.000 0.00 0.00 0.00 2.94
1561 1839 1.120530 GGCCGAGTTGAGGATAGGAA 58.879 55.000 0.00 0.00 0.00 3.36
1562 1840 1.202545 GGCCGAGTTGAGGATAGGAAC 60.203 57.143 0.00 0.00 0.00 3.62
1565 1843 3.432326 GCCGAGTTGAGGATAGGAACATT 60.432 47.826 0.00 0.00 0.00 2.71
1567 1845 4.572389 CCGAGTTGAGGATAGGAACATTTG 59.428 45.833 0.00 0.00 0.00 2.32
1601 1880 8.718158 TCTCTCTCTGACCACATGATAATTAT 57.282 34.615 0.00 0.00 0.00 1.28
1653 1932 6.035975 CACTGTTCTTTTTGTGTCAATTTCCC 59.964 38.462 0.00 0.00 0.00 3.97
1678 1958 5.624159 TCCATGAAGGGAGTATAATGCTTG 58.376 41.667 0.00 0.00 38.24 4.01
1835 2116 7.998383 ACCATGTTAAGCAGGTATCATTGAATA 59.002 33.333 0.00 0.00 31.32 1.75
1842 2123 6.066690 AGCAGGTATCATTGAATAATGTGCT 58.933 36.000 8.39 8.39 42.21 4.40
2095 2394 6.197096 CAGTGTTCACTCAGTTTGCAATTTAC 59.803 38.462 0.00 0.00 0.00 2.01
2101 2400 4.202010 ACTCAGTTTGCAATTTACGCTGTT 60.202 37.500 0.00 0.00 0.00 3.16
2102 2401 4.041049 TCAGTTTGCAATTTACGCTGTTG 58.959 39.130 0.00 0.00 0.00 3.33
2103 2402 2.794350 AGTTTGCAATTTACGCTGTTGC 59.206 40.909 0.00 8.04 46.24 4.17
2610 2923 1.269517 GCTACAGATGAGGAGCTTCCG 60.270 57.143 0.00 0.00 42.75 4.30
2679 2992 7.078249 TCATTGCCCATATTACATAGTCAGT 57.922 36.000 0.00 0.00 0.00 3.41
2686 2999 9.502091 GCCCATATTACATAGTCAGTGAATAAA 57.498 33.333 4.14 0.00 0.00 1.40
2863 3176 2.202756 GCTAGACGAAGCCCACGG 60.203 66.667 0.00 0.00 36.45 4.94
2878 3191 2.888414 CCCACGGAACTTTTGGTATGTT 59.112 45.455 0.00 0.00 0.00 2.71
2879 3192 3.057806 CCCACGGAACTTTTGGTATGTTC 60.058 47.826 0.00 0.00 39.16 3.18
2880 3193 3.818773 CCACGGAACTTTTGGTATGTTCT 59.181 43.478 0.00 0.00 39.58 3.01
2881 3194 4.083484 CCACGGAACTTTTGGTATGTTCTC 60.083 45.833 0.00 0.00 39.58 2.87
2882 3195 4.755123 CACGGAACTTTTGGTATGTTCTCT 59.245 41.667 0.00 0.00 39.58 3.10
2958 3278 7.603180 ATGCACCTATAGATCAGTGACTTTA 57.397 36.000 0.00 0.00 31.79 1.85
2961 3281 7.124298 TGCACCTATAGATCAGTGACTTTAGTT 59.876 37.037 0.00 0.00 31.79 2.24
3013 3333 6.300703 TCCTCTTTATAGTGTCTCTAGAGGC 58.699 44.000 17.74 17.74 41.54 4.70
3096 3426 5.751243 TTTACCACTCTCTTGTTTCTTGC 57.249 39.130 0.00 0.00 0.00 4.01
3097 3427 2.576615 ACCACTCTCTTGTTTCTTGCC 58.423 47.619 0.00 0.00 0.00 4.52
3241 3571 6.612247 ACATTTGTTTCACAGAATACGTCA 57.388 33.333 0.00 0.00 0.00 4.35
3563 3893 3.572632 AATGTGCAGCTGGATACTGAT 57.427 42.857 17.12 0.00 37.32 2.90
3600 3930 4.943705 ACTCCACAATAATGCAGGTTAGTG 59.056 41.667 6.08 6.08 36.16 2.74
3601 3931 5.172687 TCCACAATAATGCAGGTTAGTGA 57.827 39.130 12.94 0.00 34.33 3.41
3624 3954 6.894654 TGAATGGAATAATTTTGAGCCCTACA 59.105 34.615 0.00 0.00 0.00 2.74
3757 4087 5.049954 TCTCAAAACCGGACAATTTAAGTCG 60.050 40.000 9.46 0.00 36.87 4.18
3968 4305 3.314331 CTGGTCCTGGCGACACCT 61.314 66.667 0.00 0.00 43.95 4.00
4120 4505 2.735772 CCTACAGCCATGCCCGAGT 61.736 63.158 0.00 0.00 0.00 4.18
4127 4512 1.077501 CCATGCCCGAGTGGATTGT 60.078 57.895 0.00 0.00 37.72 2.71
4543 4964 1.073216 CTCGTCGACACACCATCTGC 61.073 60.000 17.16 0.00 0.00 4.26
5477 5909 1.503818 CTGGACCGGTCAAAACCACG 61.504 60.000 34.40 13.94 46.86 4.94
5549 5981 1.388065 TTTGGGGTGCAAGTTGTCCG 61.388 55.000 4.48 0.00 0.00 4.79
5567 5999 2.235402 TCCGGTTTCATAGTTGAGGGAC 59.765 50.000 0.00 0.00 32.27 4.46
5598 6030 9.549078 TTTAAACTTCGCCAAAAATTAAAGGAT 57.451 25.926 0.00 0.00 0.00 3.24
5711 6144 4.167652 TGACCTCCCCTTTCGTTTTAAA 57.832 40.909 0.00 0.00 0.00 1.52
5929 6364 6.486657 TCACTGCTTTAGTATTCTTTGCTTGT 59.513 34.615 0.00 0.00 37.60 3.16
5952 6388 4.269523 TGGACCCACAGTGCAGCC 62.270 66.667 0.00 0.00 42.62 4.85
6051 6487 9.646336 GTCGGTATGTGTTCATTTATTTGTATC 57.354 33.333 0.00 0.00 35.70 2.24
6109 6545 4.396166 AGTCACTATATTGGTGCAAACTGC 59.604 41.667 0.00 0.00 45.29 4.40
6143 6587 8.611757 CAAACCTAAGCTTTATGCAAACTTTTT 58.388 29.630 3.20 0.00 45.94 1.94
6404 6856 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
6455 6907 4.227527 CAGGGGTAAGACTAGGTTCCAATT 59.772 45.833 0.00 0.00 0.00 2.32
6469 6921 2.418669 TCCAATTATCCCTCCCCAGAC 58.581 52.381 0.00 0.00 0.00 3.51
6473 6925 2.615191 TTATCCCTCCCCAGACCCCG 62.615 65.000 0.00 0.00 0.00 5.73
6504 6956 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
6513 6965 1.239347 GCACTGGGTCTGTCCTTTTC 58.761 55.000 0.00 0.00 36.25 2.29
6531 6984 6.500751 TCCTTTTCTTTATGTGTACTCCCTCT 59.499 38.462 0.00 0.00 0.00 3.69
6598 7051 8.376270 ACTTGCTTAAGTTTGACTACCTCTATT 58.624 33.333 4.02 0.00 0.00 1.73
6610 7063 6.939730 TGACTACCTCTATTGAAAAATGTGCA 59.060 34.615 0.00 0.00 0.00 4.57
6857 7313 2.892852 TGCTGCCTTGAGTATGCTTTTT 59.107 40.909 0.00 0.00 0.00 1.94
6878 7334 4.787135 TGGATATTTAGTCATGGTGCCA 57.213 40.909 0.00 0.00 0.00 4.92
6910 7366 4.735369 TCCCTATTTGCTTTCTTTGTCCA 58.265 39.130 0.00 0.00 0.00 4.02
6995 7451 1.069204 TCAGTCACCTGAAGACACTGC 59.931 52.381 0.00 0.00 44.67 4.40
7167 7623 0.456312 ATCTCTCCGACGCAACGTTC 60.456 55.000 0.00 0.00 41.37 3.95
7237 7693 0.370273 CAACGCTCGGATTACTGCAC 59.630 55.000 0.00 0.00 0.00 4.57
7459 7915 2.672195 GCAATTTGCTGTTCTGTAGGCC 60.672 50.000 14.11 0.00 40.96 5.19
7581 8037 5.292834 AGAAATCGCATCGCCAGAATATATG 59.707 40.000 0.00 0.00 0.00 1.78
7582 8038 3.592898 TCGCATCGCCAGAATATATGT 57.407 42.857 0.00 0.00 0.00 2.29
7583 8039 3.925379 TCGCATCGCCAGAATATATGTT 58.075 40.909 0.00 0.00 0.00 2.71
7584 8040 3.926527 TCGCATCGCCAGAATATATGTTC 59.073 43.478 4.12 4.12 0.00 3.18
7611 8067 4.564782 TTCAGATTCTGACTTGCCTCAT 57.435 40.909 15.90 0.00 40.46 2.90
7630 8086 6.127925 GCCTCATTTGATGTGAGATGTTTGTA 60.128 38.462 4.79 0.00 44.57 2.41
7681 8137 1.909700 TGTGCCTTTTGAGATGACCC 58.090 50.000 0.00 0.00 0.00 4.46
7699 8155 6.677781 TGACCCGAAACAGATTTTATCATC 57.322 37.500 0.00 0.00 0.00 2.92
7734 8190 7.550551 ACATAATGTACAACTGACAAGAGATGG 59.449 37.037 0.00 0.00 0.00 3.51
7784 8240 7.974501 TGAAATTCTTACAATCGTCTCTAGGAC 59.025 37.037 0.00 0.00 41.28 3.85
7824 8688 4.503714 CCCTCATGGTATGTTTGGTACT 57.496 45.455 0.00 0.00 0.00 2.73
7825 8689 5.623956 CCCTCATGGTATGTTTGGTACTA 57.376 43.478 0.00 0.00 0.00 1.82
7877 8741 7.004555 TGTCTAGCCTAAATTTCAGTCAAGA 57.995 36.000 0.00 0.00 0.00 3.02
7966 8830 7.387948 AGTGAACACTCTTACATTAACATGTCC 59.612 37.037 0.00 0.00 39.08 4.02
7969 8833 8.458573 AACACTCTTACATTAACATGTCCAAA 57.541 30.769 0.00 0.00 43.06 3.28
7971 8835 7.936847 ACACTCTTACATTAACATGTCCAAAGA 59.063 33.333 0.00 2.76 43.06 2.52
8020 8898 9.841880 ATACTAAGTATACAACATAGACATGCG 57.158 33.333 5.50 0.00 33.87 4.73
8021 8899 7.937649 ACTAAGTATACAACATAGACATGCGA 58.062 34.615 5.50 0.00 33.87 5.10
8024 8902 5.983720 AGTATACAACATAGACATGCGAACC 59.016 40.000 5.50 0.00 35.39 3.62
8028 8906 3.266510 ACATAGACATGCGAACCACAT 57.733 42.857 0.00 0.00 35.39 3.21
8032 8910 2.715046 AGACATGCGAACCACATGAAT 58.285 42.857 10.49 0.00 46.33 2.57
8035 8913 3.342719 ACATGCGAACCACATGAATGTA 58.657 40.909 10.49 0.00 46.33 2.29
8041 8919 4.808895 GCGAACCACATGAATGTACTCATA 59.191 41.667 0.00 0.00 39.39 2.15
8042 8920 5.276868 GCGAACCACATGAATGTACTCATAC 60.277 44.000 0.00 0.00 39.39 2.39
8043 8921 5.810074 CGAACCACATGAATGTACTCATACA 59.190 40.000 0.00 0.00 45.37 2.29
8056 8934 7.203255 TGTACTCATACATCATCTACCGAAG 57.797 40.000 0.00 0.00 36.34 3.79
8057 8935 6.206829 TGTACTCATACATCATCTACCGAAGG 59.793 42.308 0.00 0.00 45.52 3.46
8083 8961 7.776933 TGGATTACGAAGAAGATTGATCAAG 57.223 36.000 14.54 0.00 0.00 3.02
8084 8962 7.331026 TGGATTACGAAGAAGATTGATCAAGT 58.669 34.615 14.54 6.16 0.00 3.16
8086 8964 9.314321 GGATTACGAAGAAGATTGATCAAGTAA 57.686 33.333 14.54 13.20 0.00 2.24
8088 8966 6.969828 ACGAAGAAGATTGATCAAGTAACC 57.030 37.500 14.54 2.38 0.00 2.85
8089 8967 6.464222 ACGAAGAAGATTGATCAAGTAACCA 58.536 36.000 14.54 0.00 0.00 3.67
8090 8968 6.369065 ACGAAGAAGATTGATCAAGTAACCAC 59.631 38.462 14.54 3.11 0.00 4.16
8091 8969 6.368791 CGAAGAAGATTGATCAAGTAACCACA 59.631 38.462 14.54 0.00 0.00 4.17
8092 8970 7.095229 CGAAGAAGATTGATCAAGTAACCACAA 60.095 37.037 14.54 0.00 0.00 3.33
8093 8971 8.463930 AAGAAGATTGATCAAGTAACCACAAA 57.536 30.769 14.54 0.00 0.00 2.83
8094 8972 7.875971 AGAAGATTGATCAAGTAACCACAAAC 58.124 34.615 14.54 0.00 0.00 2.93
8095 8973 7.502226 AGAAGATTGATCAAGTAACCACAAACA 59.498 33.333 14.54 0.00 0.00 2.83
8096 8974 6.970484 AGATTGATCAAGTAACCACAAACAC 58.030 36.000 14.54 0.00 0.00 3.32
8097 8975 6.545666 AGATTGATCAAGTAACCACAAACACA 59.454 34.615 14.54 0.00 0.00 3.72
8098 8976 5.493133 TGATCAAGTAACCACAAACACAC 57.507 39.130 0.00 0.00 0.00 3.82
8099 8977 4.336993 TGATCAAGTAACCACAAACACACC 59.663 41.667 0.00 0.00 0.00 4.16
8100 8978 3.958018 TCAAGTAACCACAAACACACCT 58.042 40.909 0.00 0.00 0.00 4.00
8101 8979 4.337145 TCAAGTAACCACAAACACACCTT 58.663 39.130 0.00 0.00 0.00 3.50
8102 8980 4.156922 TCAAGTAACCACAAACACACCTTG 59.843 41.667 0.00 0.00 0.00 3.61
8131 9055 7.546667 GTCAACGGAAACATACCTAGTATTTGA 59.453 37.037 0.00 0.00 0.00 2.69
8133 9057 8.548721 CAACGGAAACATACCTAGTATTTGATC 58.451 37.037 0.00 0.00 0.00 2.92
8139 9063 7.304497 ACATACCTAGTATTTGATCCCTGAC 57.696 40.000 0.00 0.00 0.00 3.51
8140 9064 4.939052 ACCTAGTATTTGATCCCTGACG 57.061 45.455 0.00 0.00 0.00 4.35
8169 9093 3.308188 GGGATACAACAACCCTGCTAACT 60.308 47.826 0.00 0.00 40.39 2.24
8170 9094 4.080751 GGGATACAACAACCCTGCTAACTA 60.081 45.833 0.00 0.00 40.39 2.24
8171 9095 5.397559 GGGATACAACAACCCTGCTAACTAT 60.398 44.000 0.00 0.00 40.39 2.12
8172 9096 5.758784 GGATACAACAACCCTGCTAACTATC 59.241 44.000 0.00 0.00 0.00 2.08
8174 9098 5.242795 ACAACAACCCTGCTAACTATCTT 57.757 39.130 0.00 0.00 0.00 2.40
8175 9099 5.631119 ACAACAACCCTGCTAACTATCTTT 58.369 37.500 0.00 0.00 0.00 2.52
8197 9121 5.845391 TTTTGAGGAAACCCTGTTAACTG 57.155 39.130 7.22 6.33 33.25 3.16
8198 9122 2.858745 TGAGGAAACCCTGTTAACTGC 58.141 47.619 7.22 0.00 33.25 4.40
8199 9123 2.160205 GAGGAAACCCTGTTAACTGCC 58.840 52.381 7.22 2.92 33.25 4.85
8200 9124 1.203013 AGGAAACCCTGTTAACTGCCC 60.203 52.381 7.22 3.33 31.48 5.36
8201 9125 1.479757 GGAAACCCTGTTAACTGCCCA 60.480 52.381 7.22 0.00 0.00 5.36
8203 9127 1.923356 AACCCTGTTAACTGCCCATG 58.077 50.000 7.22 0.00 0.00 3.66
8204 9128 0.777446 ACCCTGTTAACTGCCCATGT 59.223 50.000 7.22 0.00 0.00 3.21
8205 9129 1.146982 ACCCTGTTAACTGCCCATGTT 59.853 47.619 7.22 0.00 0.00 2.71
8206 9130 2.377193 ACCCTGTTAACTGCCCATGTTA 59.623 45.455 7.22 0.00 0.00 2.41
8207 9131 3.181427 ACCCTGTTAACTGCCCATGTTAA 60.181 43.478 7.22 0.00 37.49 2.01
8210 9134 5.046663 CCCTGTTAACTGCCCATGTTAAATT 60.047 40.000 7.22 0.00 40.24 1.82
8212 9143 7.033185 CCTGTTAACTGCCCATGTTAAATTAC 58.967 38.462 7.22 0.00 40.24 1.89
8233 9164 5.668558 ACATTTTAGTCAACGGTCTCAAC 57.331 39.130 0.00 0.00 0.00 3.18
8234 9165 5.365619 ACATTTTAGTCAACGGTCTCAACT 58.634 37.500 0.00 0.00 0.00 3.16
8238 9169 5.978934 TTAGTCAACGGTCTCAACTTTTC 57.021 39.130 0.00 0.00 0.00 2.29
8243 9174 4.331717 TCAACGGTCTCAACTTTTCAACTC 59.668 41.667 0.00 0.00 0.00 3.01
8244 9175 3.869065 ACGGTCTCAACTTTTCAACTCA 58.131 40.909 0.00 0.00 0.00 3.41
8245 9176 4.258543 ACGGTCTCAACTTTTCAACTCAA 58.741 39.130 0.00 0.00 0.00 3.02
8246 9177 4.332819 ACGGTCTCAACTTTTCAACTCAAG 59.667 41.667 0.00 0.00 0.00 3.02
8247 9178 4.602006 GGTCTCAACTTTTCAACTCAAGC 58.398 43.478 0.00 0.00 0.00 4.01
8248 9179 4.274865 GTCTCAACTTTTCAACTCAAGCG 58.725 43.478 0.00 0.00 0.00 4.68
8249 9180 4.034048 GTCTCAACTTTTCAACTCAAGCGA 59.966 41.667 0.00 0.00 0.00 4.93
8252 9183 4.634004 TCAACTTTTCAACTCAAGCGAAGA 59.366 37.500 0.00 0.00 0.00 2.87
8253 9184 4.802876 ACTTTTCAACTCAAGCGAAGAG 57.197 40.909 0.00 2.22 39.04 2.85
8257 9188 4.848562 TTCAACTCAAGCGAAGAGAGTA 57.151 40.909 9.56 0.00 41.45 2.59
8258 9189 4.427096 TCAACTCAAGCGAAGAGAGTAG 57.573 45.455 9.56 0.00 41.45 2.57
8260 9191 1.474879 ACTCAAGCGAAGAGAGTAGGC 59.525 52.381 9.56 0.00 40.59 3.93
8262 9193 1.893137 TCAAGCGAAGAGAGTAGGCAA 59.107 47.619 0.00 0.00 0.00 4.52
8263 9194 2.299013 TCAAGCGAAGAGAGTAGGCAAA 59.701 45.455 0.00 0.00 0.00 3.68
8264 9195 2.371910 AGCGAAGAGAGTAGGCAAAC 57.628 50.000 0.00 0.00 0.00 2.93
8265 9196 0.992802 GCGAAGAGAGTAGGCAAACG 59.007 55.000 0.00 0.00 0.00 3.60
8267 9198 0.992802 GAAGAGAGTAGGCAAACGCG 59.007 55.000 3.53 3.53 0.00 6.01
8269 9200 0.818296 AGAGAGTAGGCAAACGCGAT 59.182 50.000 15.93 0.00 0.00 4.58
8270 9201 1.201343 GAGAGTAGGCAAACGCGATC 58.799 55.000 15.93 0.00 0.00 3.69
8273 9204 1.933853 GAGTAGGCAAACGCGATCAAT 59.066 47.619 15.93 0.00 0.00 2.57
8274 9205 1.933853 AGTAGGCAAACGCGATCAATC 59.066 47.619 15.93 0.00 0.00 2.67
8275 9206 1.663643 GTAGGCAAACGCGATCAATCA 59.336 47.619 15.93 0.00 0.00 2.57
8277 9208 1.745087 AGGCAAACGCGATCAATCAAT 59.255 42.857 15.93 0.00 0.00 2.57
8278 9209 2.164219 AGGCAAACGCGATCAATCAATT 59.836 40.909 15.93 0.00 0.00 2.32
8279 9210 2.923020 GGCAAACGCGATCAATCAATTT 59.077 40.909 15.93 0.00 0.00 1.82
8280 9211 3.367630 GGCAAACGCGATCAATCAATTTT 59.632 39.130 15.93 0.00 0.00 1.82
8281 9212 4.143137 GGCAAACGCGATCAATCAATTTTT 60.143 37.500 15.93 0.00 0.00 1.94
8322 9253 9.461312 TCAATTAATAATTACCTGAGCAAGTGT 57.539 29.630 0.00 0.00 0.00 3.55
8323 9254 9.722056 CAATTAATAATTACCTGAGCAAGTGTC 57.278 33.333 0.00 0.00 0.00 3.67
8324 9255 9.461312 AATTAATAATTACCTGAGCAAGTGTCA 57.539 29.630 0.00 0.00 0.00 3.58
8325 9256 8.856153 TTAATAATTACCTGAGCAAGTGTCAA 57.144 30.769 0.00 0.00 0.00 3.18
8326 9257 7.759489 AATAATTACCTGAGCAAGTGTCAAA 57.241 32.000 0.00 0.00 0.00 2.69
8327 9258 7.759489 ATAATTACCTGAGCAAGTGTCAAAA 57.241 32.000 0.00 0.00 0.00 2.44
8328 9259 6.463995 AATTACCTGAGCAAGTGTCAAAAA 57.536 33.333 0.00 0.00 0.00 1.94
8355 9286 2.315720 ATTTCCAGAGCAGGCCTTTT 57.684 45.000 0.00 0.00 0.00 2.27
8356 9287 1.620822 TTTCCAGAGCAGGCCTTTTC 58.379 50.000 0.00 3.35 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.276438 TCACGTGAAGATGATTGTTCAATAGAG 59.724 37.037 17.62 0.00 36.94 2.43
5 6 7.294676 TCACGTGAAGATGATTGTTCAATAG 57.705 36.000 17.62 0.00 36.94 1.73
6 7 7.011389 GGATCACGTGAAGATGATTGTTCAATA 59.989 37.037 24.13 0.00 36.94 1.90
7 8 6.183360 GGATCACGTGAAGATGATTGTTCAAT 60.183 38.462 24.13 0.00 36.94 2.57
8 9 5.122239 GGATCACGTGAAGATGATTGTTCAA 59.878 40.000 24.13 0.00 36.94 2.69
9 10 4.631377 GGATCACGTGAAGATGATTGTTCA 59.369 41.667 24.13 0.00 35.67 3.18
10 11 4.872691 AGGATCACGTGAAGATGATTGTTC 59.127 41.667 24.13 10.97 35.67 3.18
11 12 4.836825 AGGATCACGTGAAGATGATTGTT 58.163 39.130 24.13 0.75 35.67 2.83
12 13 4.081476 TGAGGATCACGTGAAGATGATTGT 60.081 41.667 24.13 1.62 42.56 2.71
13 14 4.436332 TGAGGATCACGTGAAGATGATTG 58.564 43.478 24.13 0.00 42.56 2.67
14 15 4.743057 TGAGGATCACGTGAAGATGATT 57.257 40.909 24.13 3.36 42.56 2.57
55 56 2.766828 AGGGATGCTTGTACTACTGGAC 59.233 50.000 0.00 0.00 0.00 4.02
122 151 9.588096 GGAGTTATGAAATTAGGGGTTATTGAT 57.412 33.333 0.00 0.00 0.00 2.57
127 156 8.931568 GTAGAGGAGTTATGAAATTAGGGGTTA 58.068 37.037 0.00 0.00 0.00 2.85
134 163 9.624373 ACGAGTAGTAGAGGAGTTATGAAATTA 57.376 33.333 0.00 0.00 0.00 1.40
155 184 3.560068 GGATCTGTGTTTGACAAACGAGT 59.440 43.478 22.59 12.76 44.28 4.18
207 237 9.901172 TGTAGATCTTGTGAAGTACTAGTATCA 57.099 33.333 5.75 3.98 34.36 2.15
212 242 8.865001 GCTTTTGTAGATCTTGTGAAGTACTAG 58.135 37.037 0.00 0.00 34.06 2.57
213 243 8.585881 AGCTTTTGTAGATCTTGTGAAGTACTA 58.414 33.333 0.00 0.00 0.00 1.82
254 494 6.926272 AGTGAACAAAACAGCAAAGTTACAAA 59.074 30.769 0.00 0.00 0.00 2.83
255 495 6.451393 AGTGAACAAAACAGCAAAGTTACAA 58.549 32.000 0.00 0.00 0.00 2.41
256 496 6.019779 AGTGAACAAAACAGCAAAGTTACA 57.980 33.333 0.00 0.00 0.00 2.41
257 497 5.515270 GGAGTGAACAAAACAGCAAAGTTAC 59.485 40.000 0.00 0.00 0.00 2.50
258 498 5.417580 AGGAGTGAACAAAACAGCAAAGTTA 59.582 36.000 0.00 0.00 0.00 2.24
303 543 5.784578 TTTTCTAGGGCAAAGGAAGAAAC 57.215 39.130 0.00 0.00 36.27 2.78
339 587 2.199117 TCCGTGTGGAGTAGATGGC 58.801 57.895 0.00 0.00 40.17 4.40
518 769 2.187946 GATGTGGAGTGGGCGGAG 59.812 66.667 0.00 0.00 0.00 4.63
519 770 3.770040 CGATGTGGAGTGGGCGGA 61.770 66.667 0.00 0.00 0.00 5.54
522 773 4.101448 AGGCGATGTGGAGTGGGC 62.101 66.667 0.00 0.00 0.00 5.36
523 774 2.187946 GAGGCGATGTGGAGTGGG 59.812 66.667 0.00 0.00 0.00 4.61
524 775 2.187946 GGAGGCGATGTGGAGTGG 59.812 66.667 0.00 0.00 0.00 4.00
525 776 2.187946 GGGAGGCGATGTGGAGTG 59.812 66.667 0.00 0.00 0.00 3.51
526 777 3.461773 CGGGAGGCGATGTGGAGT 61.462 66.667 0.00 0.00 0.00 3.85
527 778 3.461773 ACGGGAGGCGATGTGGAG 61.462 66.667 0.00 0.00 0.00 3.86
995 1246 2.736682 CCGTCGTCCGACATTTGGC 61.737 63.158 18.69 0.00 44.77 4.52
996 1247 2.736682 GCCGTCGTCCGACATTTGG 61.737 63.158 18.69 12.50 44.77 3.28
997 1248 2.776072 GCCGTCGTCCGACATTTG 59.224 61.111 18.69 6.08 44.77 2.32
998 1249 2.807895 CGCCGTCGTCCGACATTT 60.808 61.111 18.69 0.00 44.77 2.32
999 1250 4.789075 CCGCCGTCGTCCGACATT 62.789 66.667 18.69 0.00 44.77 2.71
1122 1373 4.570874 GAATGGAGGGAGGCGGGC 62.571 72.222 0.00 0.00 0.00 6.13
1177 1436 2.326550 CACGGGCGAAACACACAC 59.673 61.111 0.00 0.00 0.00 3.82
1178 1437 3.578272 GCACGGGCGAAACACACA 61.578 61.111 0.00 0.00 0.00 3.72
1179 1438 4.322385 GGCACGGGCGAAACACAC 62.322 66.667 2.17 0.00 42.47 3.82
1198 1457 0.318441 CAGGCGAGGAGTCAAACAGA 59.682 55.000 0.00 0.00 0.00 3.41
1199 1458 0.034059 ACAGGCGAGGAGTCAAACAG 59.966 55.000 0.00 0.00 0.00 3.16
1215 1474 2.028766 ATCTGCGCGCATTCGAACAG 62.029 55.000 36.48 20.30 39.76 3.16
1282 1541 2.192187 GTACTCCGGGTAGGCCTCG 61.192 68.421 9.68 7.02 40.77 4.63
1374 1633 2.270275 CTGTACGACAGCTCTGAAGG 57.730 55.000 3.60 0.00 39.62 3.46
1387 1664 3.181524 CCAAAGTAATTCGGCACTGTACG 60.182 47.826 0.00 0.00 0.00 3.67
1422 1699 4.517453 TGGTTTAAGAACTATGGCACACAC 59.483 41.667 0.00 0.00 37.22 3.82
1423 1700 4.720046 TGGTTTAAGAACTATGGCACACA 58.280 39.130 0.00 0.00 37.22 3.72
1426 1703 3.181510 CGCTGGTTTAAGAACTATGGCAC 60.182 47.826 0.00 0.00 36.03 5.01
1435 1712 3.007614 AGTCTTAGCCGCTGGTTTAAGAA 59.992 43.478 2.16 0.00 34.99 2.52
1438 1715 2.354403 GGAGTCTTAGCCGCTGGTTTAA 60.354 50.000 2.16 0.00 0.00 1.52
1450 1727 2.428890 AGCCAGATTCGTGGAGTCTTAG 59.571 50.000 6.40 0.00 40.44 2.18
1514 1792 4.481368 ACAGTACAGTTGTTCAGTTCCA 57.519 40.909 0.00 0.00 0.00 3.53
1538 1816 2.307768 CTATCCTCAACTCGGCCTACA 58.692 52.381 0.00 0.00 0.00 2.74
1539 1817 1.614413 CCTATCCTCAACTCGGCCTAC 59.386 57.143 0.00 0.00 0.00 3.18
1540 1818 1.497716 TCCTATCCTCAACTCGGCCTA 59.502 52.381 0.00 0.00 0.00 3.93
1541 1819 0.261991 TCCTATCCTCAACTCGGCCT 59.738 55.000 0.00 0.00 0.00 5.19
1542 1820 1.120530 TTCCTATCCTCAACTCGGCC 58.879 55.000 0.00 0.00 0.00 6.13
1545 1823 4.572389 CCAAATGTTCCTATCCTCAACTCG 59.428 45.833 0.00 0.00 0.00 4.18
1560 1838 5.310857 AGAGAGAGAAACTACCCCAAATGTT 59.689 40.000 0.00 0.00 0.00 2.71
1561 1839 4.846940 AGAGAGAGAAACTACCCCAAATGT 59.153 41.667 0.00 0.00 0.00 2.71
1562 1840 5.046304 TCAGAGAGAGAAACTACCCCAAATG 60.046 44.000 0.00 0.00 0.00 2.32
1565 1843 3.833070 GTCAGAGAGAGAAACTACCCCAA 59.167 47.826 0.00 0.00 0.00 4.12
1567 1845 2.761767 GGTCAGAGAGAGAAACTACCCC 59.238 54.545 0.00 0.00 0.00 4.95
1601 1880 1.412710 CCAGCGGAAATGCTCCTACTA 59.587 52.381 0.00 0.00 45.23 1.82
1653 1932 5.874093 AGCATTATACTCCCTTCATGGAAG 58.126 41.667 0.00 0.00 39.17 3.46
1671 1951 2.508526 GACAGGGACACTTCAAGCATT 58.491 47.619 0.00 0.00 0.00 3.56
1678 1958 2.047179 GGCCGACAGGGACACTTC 60.047 66.667 0.00 0.00 46.58 3.01
1725 2006 5.108187 AGTTGTGATGATTATCTGCAGGT 57.892 39.130 15.13 9.93 34.31 4.00
1835 2116 2.009774 GTGAGCGGTATCAAGCACATT 58.990 47.619 0.00 0.00 36.46 2.71
1842 2123 2.665649 ATTGTCGTGAGCGGTATCAA 57.334 45.000 0.00 0.00 38.89 2.57
2101 2400 5.009110 TCAACATGAAATAAGTGGTTTCGCA 59.991 36.000 0.00 0.00 38.18 5.10
2102 2401 5.457140 TCAACATGAAATAAGTGGTTTCGC 58.543 37.500 0.00 0.00 38.18 4.70
2103 2402 6.915300 TGTTCAACATGAAATAAGTGGTTTCG 59.085 34.615 0.00 0.00 38.22 3.46
2686 2999 8.375493 TCCTGTCTCAAGTAAATAAGTATGGT 57.625 34.615 0.00 0.00 0.00 3.55
2863 3176 8.621286 TCAGAAAAGAGAACATACCAAAAGTTC 58.379 33.333 0.00 0.00 41.37 3.01
2934 3254 6.491714 AAAGTCACTGATCTATAGGTGCAT 57.508 37.500 0.00 0.00 0.00 3.96
2958 3278 8.133024 TGAAAACAGGCATTATAATCCAAACT 57.867 30.769 13.23 0.00 0.00 2.66
2961 3281 7.716799 ACTGAAAACAGGCATTATAATCCAA 57.283 32.000 13.23 0.00 0.00 3.53
3085 3415 1.986882 AGTGGGAGGCAAGAAACAAG 58.013 50.000 0.00 0.00 0.00 3.16
3096 3426 6.992715 CCAAATGATTAGTTACTAGTGGGAGG 59.007 42.308 5.39 0.00 0.00 4.30
3097 3427 7.495934 CACCAAATGATTAGTTACTAGTGGGAG 59.504 40.741 5.39 0.00 0.00 4.30
3241 3571 7.304497 AGGAACATACTTCAAGTGTTCTAGT 57.696 36.000 16.46 4.12 46.67 2.57
3563 3893 0.684535 TGGAGTCCTTGCGATCAACA 59.315 50.000 11.33 0.00 0.00 3.33
3570 3900 2.223340 GCATTATTGTGGAGTCCTTGCG 60.223 50.000 11.33 0.00 0.00 4.85
3600 3930 7.346751 TGTAGGGCTCAAAATTATTCCATTC 57.653 36.000 0.00 0.00 0.00 2.67
3601 3931 7.919385 ATGTAGGGCTCAAAATTATTCCATT 57.081 32.000 0.00 0.00 0.00 3.16
3757 4087 1.372087 CCACTTGCAATCGGGAGAGC 61.372 60.000 0.00 0.00 45.48 4.09
4477 4898 4.996434 GGTGGTGCAGCAGCTCGT 62.996 66.667 34.07 0.00 42.74 4.18
4954 5375 1.438651 GCACGAGGCATGTTCTACAA 58.561 50.000 0.00 0.00 43.97 2.41
5060 5481 7.094592 GGCAAAGGTTCCTAGCATATTTATCTC 60.095 40.741 14.80 0.00 0.00 2.75
5140 5569 9.744468 GGAAACTTAATTAAGTGCAGAGAAAAA 57.256 29.630 27.29 0.00 45.17 1.94
5258 5688 6.807230 AGCTCGACGGAATATCATTATGTTAC 59.193 38.462 0.00 0.00 0.00 2.50
5477 5909 3.053455 GCGGTATCTATGCTGACTCAAC 58.947 50.000 0.00 0.00 0.00 3.18
5549 5981 3.713826 TGGTCCCTCAACTATGAAACC 57.286 47.619 0.00 0.00 34.49 3.27
5567 5999 9.937175 TTAATTTTTGGCGAAGTTTAAATTTGG 57.063 25.926 0.00 1.02 0.00 3.28
5625 6057 6.957631 ACATATGTCCACTATGAGGTCAAAA 58.042 36.000 1.41 0.00 32.17 2.44
5711 6144 5.435291 CCTCTTCTTATGCATCAGAGGTTT 58.565 41.667 23.80 0.00 43.99 3.27
5929 6364 2.236146 CTGCACTGTGGGTCCAACTATA 59.764 50.000 10.21 0.00 0.00 1.31
6109 6545 4.918810 AAAGCTTAGGTTTGTGTTGGAG 57.081 40.909 8.70 0.00 31.83 3.86
6143 6587 5.448654 CCATAGGTTCATCATTTCCCAGAA 58.551 41.667 0.00 0.00 0.00 3.02
6144 6588 4.689705 GCCATAGGTTCATCATTTCCCAGA 60.690 45.833 0.00 0.00 0.00 3.86
6145 6589 3.571401 GCCATAGGTTCATCATTTCCCAG 59.429 47.826 0.00 0.00 0.00 4.45
6310 6757 0.546122 ACACAAACTCCACAGCCAGA 59.454 50.000 0.00 0.00 0.00 3.86
6365 6812 1.417890 ACAAGTGGGAGGACTTCACAG 59.582 52.381 0.00 0.00 40.71 3.66
6366 6813 1.140852 CACAAGTGGGAGGACTTCACA 59.859 52.381 8.62 0.00 36.69 3.58
6404 6856 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
6455 6907 3.043199 GGGGTCTGGGGAGGGATA 58.957 66.667 0.00 0.00 0.00 2.59
6469 6921 4.722700 CTCCCACACAAGGCGGGG 62.723 72.222 0.00 0.00 40.68 5.73
6473 6925 0.324943 TAGAAGCTCCCACACAAGGC 59.675 55.000 0.00 0.00 0.00 4.35
6504 6956 6.043938 AGGGAGTACACATAAAGAAAAGGACA 59.956 38.462 0.00 0.00 0.00 4.02
6513 6965 4.141914 GGGACAGAGGGAGTACACATAAAG 60.142 50.000 0.00 0.00 0.00 1.85
6531 6984 8.934023 ACTAGAACTTCAATTATTTTGGGACA 57.066 30.769 0.00 0.00 0.00 4.02
6589 7042 7.394016 TCTCTGCACATTTTTCAATAGAGGTA 58.606 34.615 0.00 0.00 33.17 3.08
6598 7051 6.486320 TGTTGTAGATCTCTGCACATTTTTCA 59.514 34.615 0.00 0.00 38.29 2.69
6610 7063 6.701340 TGTGTATTTGCTGTTGTAGATCTCT 58.299 36.000 0.00 0.00 0.00 3.10
6857 7313 4.460263 GTGGCACCATGACTAAATATCCA 58.540 43.478 6.29 0.00 0.00 3.41
6878 7334 7.357471 AGAAAGCAAATAGGGATATTGAAGGT 58.643 34.615 0.00 0.00 0.00 3.50
6981 7437 0.541392 TGTGTGCAGTGTCTTCAGGT 59.459 50.000 0.00 0.00 0.00 4.00
6995 7451 4.754372 ATGATGTTAGCAACTGTGTGTG 57.246 40.909 0.00 0.00 0.00 3.82
7005 7461 2.613595 GTGATGCCGAATGATGTTAGCA 59.386 45.455 0.00 0.00 34.28 3.49
7167 7623 1.883084 GATGCCTCGGCGTACCTTG 60.883 63.158 6.85 0.00 45.51 3.61
7237 7693 6.434028 TGAAACAGGGGACATGAAAAGATAAG 59.566 38.462 0.00 0.00 0.00 1.73
7581 8037 6.302615 CAAGTCAGAATCTGAATGAACGAAC 58.697 40.000 15.28 0.00 42.46 3.95
7582 8038 5.106948 GCAAGTCAGAATCTGAATGAACGAA 60.107 40.000 23.32 0.00 42.46 3.85
7583 8039 4.389992 GCAAGTCAGAATCTGAATGAACGA 59.610 41.667 23.32 0.00 42.46 3.85
7584 8040 4.436584 GGCAAGTCAGAATCTGAATGAACG 60.437 45.833 23.32 11.42 42.46 3.95
7599 8055 3.753815 TCACATCAAATGAGGCAAGTCA 58.246 40.909 0.00 0.00 0.00 3.41
7611 8067 6.867816 GCCAAATACAAACATCTCACATCAAA 59.132 34.615 0.00 0.00 0.00 2.69
7711 8167 6.873605 CACCATCTCTTGTCAGTTGTACATTA 59.126 38.462 0.00 0.00 0.00 1.90
7734 8190 5.429957 AGAATGTTTCAAGAGTTCTGCAC 57.570 39.130 0.00 0.00 0.00 4.57
7778 8234 8.027771 GGTATACATGATAAACCTTCGTCCTAG 58.972 40.741 5.01 0.00 0.00 3.02
7784 8240 6.755206 TGAGGGTATACATGATAAACCTTCG 58.245 40.000 5.01 0.00 38.72 3.79
7823 8687 0.251341 AGGGCAAACTTGGGCACTAG 60.251 55.000 0.00 0.00 43.18 2.57
7824 8688 1.068948 TAGGGCAAACTTGGGCACTA 58.931 50.000 0.00 0.00 43.18 2.74
7825 8689 2.608759 AGGGCAAACTTGGGCACT 59.391 55.556 0.00 0.00 39.39 4.40
7877 8741 7.716799 TGGACAACTCATAGGCAAATAAAAT 57.283 32.000 0.00 0.00 0.00 1.82
7933 8797 5.353394 TGTAAGAGTGTTCACTCCAGTTT 57.647 39.130 23.73 15.93 37.46 2.66
7995 8873 9.059260 TCGCATGTCTATGTTGTATACTTAGTA 57.941 33.333 4.17 0.00 36.42 1.82
7996 8874 7.937649 TCGCATGTCTATGTTGTATACTTAGT 58.062 34.615 4.17 0.00 36.42 2.24
7997 8875 8.691727 GTTCGCATGTCTATGTTGTATACTTAG 58.308 37.037 4.17 1.31 36.65 2.18
7998 8876 7.650504 GGTTCGCATGTCTATGTTGTATACTTA 59.349 37.037 4.17 0.00 36.65 2.24
7999 8877 6.479001 GGTTCGCATGTCTATGTTGTATACTT 59.521 38.462 4.17 0.00 36.65 2.24
8000 8878 5.983720 GGTTCGCATGTCTATGTTGTATACT 59.016 40.000 4.17 0.00 36.65 2.12
8001 8879 5.751509 TGGTTCGCATGTCTATGTTGTATAC 59.248 40.000 0.00 0.00 36.65 1.47
8002 8880 5.751509 GTGGTTCGCATGTCTATGTTGTATA 59.248 40.000 0.00 0.00 36.65 1.47
8003 8881 4.570772 GTGGTTCGCATGTCTATGTTGTAT 59.429 41.667 0.00 0.00 36.65 2.29
8008 8886 2.760634 TGTGGTTCGCATGTCTATGT 57.239 45.000 0.00 0.00 36.65 2.29
8017 8895 3.000041 GAGTACATTCATGTGGTTCGCA 59.000 45.455 2.50 0.00 41.89 5.10
8018 8896 3.000041 TGAGTACATTCATGTGGTTCGC 59.000 45.455 2.50 0.00 41.89 4.70
8020 8898 7.792374 ATGTATGAGTACATTCATGTGGTTC 57.208 36.000 7.65 0.00 46.75 3.62
8032 8910 6.206829 CCTTCGGTAGATGATGTATGAGTACA 59.793 42.308 0.00 0.00 44.43 2.90
8035 8913 5.141182 ACCTTCGGTAGATGATGTATGAGT 58.859 41.667 0.00 0.00 32.11 3.41
8041 8919 3.104512 TCCAACCTTCGGTAGATGATGT 58.895 45.455 0.00 0.00 33.12 3.06
8042 8920 3.819564 TCCAACCTTCGGTAGATGATG 57.180 47.619 0.00 0.00 33.12 3.07
8043 8921 5.509163 CGTAATCCAACCTTCGGTAGATGAT 60.509 44.000 0.00 0.00 33.12 2.45
8044 8922 4.202080 CGTAATCCAACCTTCGGTAGATGA 60.202 45.833 0.00 0.00 33.12 2.92
8045 8923 4.049186 CGTAATCCAACCTTCGGTAGATG 58.951 47.826 0.00 0.00 33.12 2.90
8046 8924 3.956199 TCGTAATCCAACCTTCGGTAGAT 59.044 43.478 0.00 0.00 33.12 1.98
8047 8925 3.355378 TCGTAATCCAACCTTCGGTAGA 58.645 45.455 0.00 0.00 33.12 2.59
8048 8926 3.788333 TCGTAATCCAACCTTCGGTAG 57.212 47.619 0.00 0.00 33.12 3.18
8049 8927 3.763360 TCTTCGTAATCCAACCTTCGGTA 59.237 43.478 0.00 0.00 33.12 4.02
8050 8928 2.564062 TCTTCGTAATCCAACCTTCGGT 59.436 45.455 0.00 0.00 37.65 4.69
8051 8929 3.241067 TCTTCGTAATCCAACCTTCGG 57.759 47.619 0.00 0.00 0.00 4.30
8052 8930 4.491676 TCTTCTTCGTAATCCAACCTTCG 58.508 43.478 0.00 0.00 0.00 3.79
8053 8931 6.594159 TCAATCTTCTTCGTAATCCAACCTTC 59.406 38.462 0.00 0.00 0.00 3.46
8054 8932 6.472887 TCAATCTTCTTCGTAATCCAACCTT 58.527 36.000 0.00 0.00 0.00 3.50
8055 8933 6.049955 TCAATCTTCTTCGTAATCCAACCT 57.950 37.500 0.00 0.00 0.00 3.50
8056 8934 6.538742 TGATCAATCTTCTTCGTAATCCAACC 59.461 38.462 0.00 0.00 0.00 3.77
8057 8935 7.539712 TGATCAATCTTCTTCGTAATCCAAC 57.460 36.000 0.00 0.00 0.00 3.77
8058 8936 7.824289 ACTTGATCAATCTTCTTCGTAATCCAA 59.176 33.333 8.96 0.00 0.00 3.53
8059 8937 7.331026 ACTTGATCAATCTTCTTCGTAATCCA 58.669 34.615 8.96 0.00 0.00 3.41
8060 8938 7.778470 ACTTGATCAATCTTCTTCGTAATCC 57.222 36.000 8.96 0.00 0.00 3.01
8062 8940 9.099454 GGTTACTTGATCAATCTTCTTCGTAAT 57.901 33.333 8.96 0.00 0.00 1.89
8067 8945 7.672983 TGTGGTTACTTGATCAATCTTCTTC 57.327 36.000 8.96 0.00 0.00 2.87
8093 8971 1.091537 CCGTTGACAACAAGGTGTGT 58.908 50.000 18.09 0.00 44.64 3.72
8094 8972 1.374560 TCCGTTGACAACAAGGTGTG 58.625 50.000 18.09 0.14 39.36 3.82
8095 8973 2.116827 TTCCGTTGACAACAAGGTGT 57.883 45.000 18.09 0.00 39.36 4.16
8096 8974 2.162608 TGTTTCCGTTGACAACAAGGTG 59.837 45.455 18.09 1.52 39.36 4.00
8097 8975 2.438411 TGTTTCCGTTGACAACAAGGT 58.562 42.857 18.09 0.00 39.36 3.50
8098 8976 3.708563 ATGTTTCCGTTGACAACAAGG 57.291 42.857 18.09 11.77 40.28 3.61
8099 8977 4.274950 AGGTATGTTTCCGTTGACAACAAG 59.725 41.667 18.09 8.81 36.64 3.16
8100 8978 4.200874 AGGTATGTTTCCGTTGACAACAA 58.799 39.130 18.09 3.24 34.19 2.83
8101 8979 3.811083 AGGTATGTTTCCGTTGACAACA 58.189 40.909 18.09 0.00 34.97 3.33
8102 8980 4.992951 ACTAGGTATGTTTCCGTTGACAAC 59.007 41.667 8.34 8.34 0.00 3.32
8108 8986 7.713942 GGATCAAATACTAGGTATGTTTCCGTT 59.286 37.037 0.00 0.00 0.00 4.44
8110 8988 6.649557 GGGATCAAATACTAGGTATGTTTCCG 59.350 42.308 0.00 0.00 0.00 4.30
8139 9063 0.834612 TTGTTGTATCCCTAGCCCCG 59.165 55.000 0.00 0.00 0.00 5.73
8140 9064 1.133884 GGTTGTTGTATCCCTAGCCCC 60.134 57.143 0.00 0.00 0.00 5.80
8147 9071 3.014623 GTTAGCAGGGTTGTTGTATCCC 58.985 50.000 0.00 0.00 41.36 3.85
8150 9074 6.561519 AGATAGTTAGCAGGGTTGTTGTAT 57.438 37.500 0.00 0.00 0.00 2.29
8174 9098 5.394773 GCAGTTAACAGGGTTTCCTCAAAAA 60.395 40.000 8.61 0.00 42.67 1.94
8175 9099 4.098807 GCAGTTAACAGGGTTTCCTCAAAA 59.901 41.667 8.61 0.00 42.67 2.44
8178 9102 2.488347 GGCAGTTAACAGGGTTTCCTCA 60.488 50.000 8.61 0.00 42.67 3.86
8179 9103 2.160205 GGCAGTTAACAGGGTTTCCTC 58.840 52.381 8.61 0.00 42.67 3.71
8180 9104 1.203013 GGGCAGTTAACAGGGTTTCCT 60.203 52.381 8.61 0.00 46.26 3.36
8181 9105 1.254026 GGGCAGTTAACAGGGTTTCC 58.746 55.000 8.61 0.00 0.00 3.13
8182 9106 1.989706 TGGGCAGTTAACAGGGTTTC 58.010 50.000 8.61 0.00 0.00 2.78
8185 9109 0.777446 ACATGGGCAGTTAACAGGGT 59.223 50.000 8.61 0.00 0.00 4.34
8188 9112 7.598278 TGTAATTTAACATGGGCAGTTAACAG 58.402 34.615 8.61 0.17 40.14 3.16
8189 9113 7.526142 TGTAATTTAACATGGGCAGTTAACA 57.474 32.000 8.61 3.18 40.14 2.41
8190 9114 8.996024 AATGTAATTTAACATGGGCAGTTAAC 57.004 30.769 0.00 0.00 40.14 2.01
8207 9131 7.972832 TGAGACCGTTGACTAAAATGTAATT 57.027 32.000 0.00 0.00 38.98 1.40
8210 9134 6.518493 AGTTGAGACCGTTGACTAAAATGTA 58.482 36.000 0.00 0.00 0.00 2.29
8212 9143 5.924475 AGTTGAGACCGTTGACTAAAATG 57.076 39.130 0.00 0.00 0.00 2.32
8218 9149 3.869065 TGAAAAGTTGAGACCGTTGACT 58.131 40.909 0.00 0.00 0.00 3.41
8224 9155 4.786609 GCTTGAGTTGAAAAGTTGAGACCG 60.787 45.833 0.00 0.00 0.00 4.79
8226 9157 4.034048 TCGCTTGAGTTGAAAAGTTGAGAC 59.966 41.667 0.00 0.00 0.00 3.36
8230 9161 4.908736 TCTTCGCTTGAGTTGAAAAGTTG 58.091 39.130 0.00 0.00 0.00 3.16
8233 9164 4.509600 ACTCTCTTCGCTTGAGTTGAAAAG 59.490 41.667 0.00 0.00 37.76 2.27
8234 9165 4.442706 ACTCTCTTCGCTTGAGTTGAAAA 58.557 39.130 0.00 0.00 37.76 2.29
8238 9169 3.506810 CCTACTCTCTTCGCTTGAGTTG 58.493 50.000 0.00 0.00 40.86 3.16
8243 9174 2.370281 TTGCCTACTCTCTTCGCTTG 57.630 50.000 0.00 0.00 0.00 4.01
8244 9175 2.689646 GTTTGCCTACTCTCTTCGCTT 58.310 47.619 0.00 0.00 0.00 4.68
8245 9176 1.402984 CGTTTGCCTACTCTCTTCGCT 60.403 52.381 0.00 0.00 0.00 4.93
8246 9177 0.992802 CGTTTGCCTACTCTCTTCGC 59.007 55.000 0.00 0.00 0.00 4.70
8247 9178 0.992802 GCGTTTGCCTACTCTCTTCG 59.007 55.000 0.00 0.00 33.98 3.79
8248 9179 0.992802 CGCGTTTGCCTACTCTCTTC 59.007 55.000 0.00 0.00 38.08 2.87
8249 9180 0.601558 TCGCGTTTGCCTACTCTCTT 59.398 50.000 5.77 0.00 38.08 2.85
8252 9183 0.530744 TGATCGCGTTTGCCTACTCT 59.469 50.000 5.77 0.00 38.08 3.24
8253 9184 1.355971 TTGATCGCGTTTGCCTACTC 58.644 50.000 5.77 0.00 38.08 2.59
8257 9188 1.164411 TTGATTGATCGCGTTTGCCT 58.836 45.000 5.77 0.00 38.08 4.75
8258 9189 2.193306 ATTGATTGATCGCGTTTGCC 57.807 45.000 5.77 0.00 38.08 4.52
8296 9227 9.461312 ACACTTGCTCAGGTAATTATTAATTGA 57.539 29.630 11.16 1.24 32.38 2.57
8298 9229 9.461312 TGACACTTGCTCAGGTAATTATTAATT 57.539 29.630 6.85 6.85 34.90 1.40
8300 9231 8.856153 TTGACACTTGCTCAGGTAATTATTAA 57.144 30.769 0.00 0.00 0.00 1.40
8301 9232 8.856153 TTTGACACTTGCTCAGGTAATTATTA 57.144 30.769 0.00 0.00 0.00 0.98
8302 9233 7.759489 TTTGACACTTGCTCAGGTAATTATT 57.241 32.000 0.00 0.00 0.00 1.40
8303 9234 7.759489 TTTTGACACTTGCTCAGGTAATTAT 57.241 32.000 0.00 0.00 0.00 1.28
8304 9235 7.575414 TTTTTGACACTTGCTCAGGTAATTA 57.425 32.000 0.00 0.00 0.00 1.40
8325 9256 7.770433 GGCCTGCTCTGGAAATTAAATATTTTT 59.230 33.333 5.91 0.00 0.00 1.94
8326 9257 7.126268 AGGCCTGCTCTGGAAATTAAATATTTT 59.874 33.333 3.11 0.00 0.00 1.82
8327 9258 6.612863 AGGCCTGCTCTGGAAATTAAATATTT 59.387 34.615 3.11 5.89 0.00 1.40
8328 9259 6.138967 AGGCCTGCTCTGGAAATTAAATATT 58.861 36.000 3.11 0.00 0.00 1.28
8329 9260 5.709594 AGGCCTGCTCTGGAAATTAAATAT 58.290 37.500 3.11 0.00 0.00 1.28
8330 9261 5.129368 AGGCCTGCTCTGGAAATTAAATA 57.871 39.130 3.11 0.00 0.00 1.40
8331 9262 3.986435 AGGCCTGCTCTGGAAATTAAAT 58.014 40.909 3.11 0.00 0.00 1.40
8332 9263 3.456380 AGGCCTGCTCTGGAAATTAAA 57.544 42.857 3.11 0.00 0.00 1.52
8339 9270 1.003355 CGAAAAGGCCTGCTCTGGA 60.003 57.895 5.69 0.00 0.00 3.86
8366 9297 1.362717 GTTAGGAGGCTCGCGCATA 59.637 57.895 8.75 0.00 38.10 3.14
8367 9298 2.107141 GTTAGGAGGCTCGCGCAT 59.893 61.111 8.75 0.00 38.10 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.