Multiple sequence alignment - TraesCS2A01G111400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G111400 chr2A 100.000 3842 0 0 1 3842 62694892 62698733 0.000000e+00 7095.0
1 TraesCS2A01G111400 chr2A 94.014 735 27 7 2215 2932 5642447 5641713 0.000000e+00 1098.0
2 TraesCS2A01G111400 chr2A 94.014 735 27 7 2215 2932 5652748 5653482 0.000000e+00 1098.0
3 TraesCS2A01G111400 chr2A 90.018 571 54 1 2266 2833 5647408 5646838 0.000000e+00 736.0
4 TraesCS2A01G111400 chr2A 86.308 409 39 12 1401 1802 5652338 5652736 2.740000e-116 429.0
5 TraesCS2A01G111400 chr2A 93.502 277 17 1 1527 1802 5642735 5642459 9.930000e-111 411.0
6 TraesCS2A01G111400 chr2A 84.424 321 32 14 1018 1332 5651909 5652217 2.240000e-77 300.0
7 TraesCS2A01G111400 chr2A 84.739 249 33 5 2990 3238 5641711 5641468 1.070000e-60 244.0
8 TraesCS2A01G111400 chr2A 84.739 249 33 5 2990 3238 5646762 5646519 1.070000e-60 244.0
9 TraesCS2A01G111400 chr2A 85.946 185 21 5 2990 3174 5653484 5653663 3.920000e-45 193.0
10 TraesCS2A01G111400 chr2A 90.291 103 6 1 2834 2932 5646866 5646764 8.660000e-27 132.0
11 TraesCS2A01G111400 chr2A 97.674 43 1 0 2953 2995 546744664 546744622 1.480000e-09 75.0
12 TraesCS2A01G111400 chr2D 91.768 1555 74 23 1402 2932 7154762 7153238 0.000000e+00 2113.0
13 TraesCS2A01G111400 chr2D 90.455 220 16 4 1018 1233 7155183 7154965 6.280000e-73 285.0
14 TraesCS2A01G111400 chr2B 89.923 913 55 21 1670 2560 1978953 1979850 0.000000e+00 1142.0
15 TraesCS2A01G111400 chr2B 93.655 725 38 3 2216 2932 2090779 2091503 0.000000e+00 1077.0
16 TraesCS2A01G111400 chr2B 93.620 721 42 1 2216 2932 1984165 1984885 0.000000e+00 1074.0
17 TraesCS2A01G111400 chr2B 88.146 658 61 8 2193 2833 2108052 2108709 0.000000e+00 767.0
18 TraesCS2A01G111400 chr2B 86.838 661 66 12 2193 2833 1988918 1989577 0.000000e+00 719.0
19 TraesCS2A01G111400 chr2B 82.108 816 81 37 1018 1803 2089986 2090766 4.190000e-179 638.0
20 TraesCS2A01G111400 chr2B 86.618 411 34 14 1421 1821 1972837 1973236 5.890000e-118 435.0
21 TraesCS2A01G111400 chr2B 84.821 448 35 15 1401 1837 2107500 2107925 1.650000e-113 420.0
22 TraesCS2A01G111400 chr2B 87.812 361 34 7 1458 1817 1983812 1984163 7.680000e-112 414.0
23 TraesCS2A01G111400 chr2B 90.196 306 23 5 1533 1837 1988491 1988790 3.600000e-105 392.0
24 TraesCS2A01G111400 chr2B 88.889 261 16 6 3594 3841 2109483 2109743 3.730000e-80 309.0
25 TraesCS2A01G111400 chr2B 83.601 311 32 15 1018 1321 2107175 2107473 1.360000e-69 274.0
26 TraesCS2A01G111400 chr2B 82.315 311 36 15 1018 1321 1988062 1988360 6.370000e-63 252.0
27 TraesCS2A01G111400 chr2B 82.877 292 33 12 1058 1332 1983369 1983660 2.960000e-61 246.0
28 TraesCS2A01G111400 chr2B 85.204 196 29 0 2638 2833 2068261 2068456 6.510000e-48 202.0
29 TraesCS2A01G111400 chr2B 84.286 210 23 7 1031 1233 1972220 1972426 3.030000e-46 196.0
30 TraesCS2A01G111400 chr2B 85.052 194 21 7 1035 1227 1982593 1982779 1.410000e-44 191.0
31 TraesCS2A01G111400 chr2B 81.726 197 32 3 1033 1228 2065383 2065576 1.100000e-35 161.0
32 TraesCS2A01G111400 chr2B 93.103 58 3 1 3125 3182 2070853 2070909 2.460000e-12 84.2
33 TraesCS2A01G111400 chr5B 85.748 421 26 14 1408 1819 433549194 433548799 7.680000e-112 414.0
34 TraesCS2A01G111400 chr5B 88.710 62 1 2 1316 1371 433549242 433549181 1.910000e-08 71.3
35 TraesCS2A01G111400 chr6B 81.496 254 34 7 2990 3238 717939103 717938858 3.030000e-46 196.0
36 TraesCS2A01G111400 chr6B 87.179 78 9 1 328 405 592227812 592227888 1.900000e-13 87.9
37 TraesCS2A01G111400 chr6B 78.761 113 21 3 345 456 580375024 580374914 5.320000e-09 73.1
38 TraesCS2A01G111400 chr4D 100.000 41 0 0 2953 2993 471153555 471153515 4.120000e-10 76.8
39 TraesCS2A01G111400 chr4D 95.652 46 2 0 2947 2992 3260973 3261018 1.480000e-09 75.0
40 TraesCS2A01G111400 chr3D 100.000 41 0 0 2953 2993 467465334 467465294 4.120000e-10 76.8
41 TraesCS2A01G111400 chrUn 95.652 46 2 0 2947 2992 16761897 16761942 1.480000e-09 75.0
42 TraesCS2A01G111400 chr1D 95.652 46 2 0 2947 2992 252595561 252595606 1.480000e-09 75.0
43 TraesCS2A01G111400 chr1D 94.000 50 2 1 2947 2995 320386783 320386832 1.480000e-09 75.0
44 TraesCS2A01G111400 chr7D 92.000 50 2 2 2947 2995 549121433 549121481 6.890000e-08 69.4
45 TraesCS2A01G111400 chr5A 85.714 70 4 6 2932 2996 538327153 538327085 6.890000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G111400 chr2A 62694892 62698733 3841 False 7095.00 7095 100.000000 1 3842 1 chr2A.!!$F1 3841
1 TraesCS2A01G111400 chr2A 5651909 5653663 1754 False 505.00 1098 87.673000 1018 3174 4 chr2A.!!$F2 2156
2 TraesCS2A01G111400 chr2A 5641468 5647408 5940 True 477.50 1098 89.550500 1527 3238 6 chr2A.!!$R2 1711
3 TraesCS2A01G111400 chr2D 7153238 7155183 1945 True 1199.00 2113 91.111500 1018 2932 2 chr2D.!!$R1 1914
4 TraesCS2A01G111400 chr2B 2089986 2091503 1517 False 857.50 1077 87.881500 1018 2932 2 chr2B.!!$F4 1914
5 TraesCS2A01G111400 chr2B 1978953 1989577 10624 False 553.75 1142 87.329125 1018 2932 8 chr2B.!!$F2 1914
6 TraesCS2A01G111400 chr2B 2107175 2109743 2568 False 442.50 767 86.364250 1018 3841 4 chr2B.!!$F5 2823
7 TraesCS2A01G111400 chr2B 1972220 1973236 1016 False 315.50 435 85.452000 1031 1821 2 chr2B.!!$F1 790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 972 0.034616 CGATCCAATCCTCTGGGAGC 59.965 60.0 0.0 0.0 45.86 4.70 F
972 973 0.399833 GATCCAATCCTCTGGGAGCC 59.600 60.0 0.0 0.0 45.86 4.70 F
2289 6078 0.250727 TTTTGACTGGCCCGAAGAGG 60.251 55.0 0.0 0.0 40.63 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 5608 0.036010 CTTCTGTGGCCACGAGGAAT 60.036 55.0 30.07 0.0 36.89 3.01 R
2643 6444 0.967380 CTGTTTGCAGGATCCCACCC 60.967 60.0 8.55 0.0 39.01 4.61 R
3527 7530 0.106769 TCAGGTGCCTGCTGTTCAAA 60.107 50.0 13.12 0.0 43.31 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 7.743116 TTTCCTTTTAGGTTCCCTTTTTCTT 57.257 32.000 0.00 0.00 36.53 2.52
120 121 7.743116 TTCCTTTTAGGTTCCCTTTTTCTTT 57.257 32.000 0.00 0.00 36.53 2.52
121 122 7.743116 TCCTTTTAGGTTCCCTTTTTCTTTT 57.257 32.000 0.00 0.00 36.53 2.27
124 125 8.265055 CCTTTTAGGTTCCCTTTTTCTTTTTCT 58.735 33.333 0.00 0.00 34.61 2.52
207 208 9.852091 GCATTTCTTCTGTTCAAATTATTCTCT 57.148 29.630 0.00 0.00 0.00 3.10
216 217 9.270576 CTGTTCAAATTATTCTCTTGTTCATCG 57.729 33.333 0.00 0.00 0.00 3.84
353 354 8.655092 TGTTCATCAAATTCAACTTTTGTTCAC 58.345 29.630 0.00 0.00 41.35 3.18
355 356 8.410030 TCATCAAATTCAACTTTTGTTCACTG 57.590 30.769 0.00 0.00 41.35 3.66
358 359 8.600449 TCAAATTCAACTTTTGTTCACTGTTT 57.400 26.923 0.00 0.00 41.35 2.83
359 360 9.050601 TCAAATTCAACTTTTGTTCACTGTTTT 57.949 25.926 0.00 0.00 41.35 2.43
360 361 9.316859 CAAATTCAACTTTTGTTCACTGTTTTC 57.683 29.630 0.00 0.00 41.35 2.29
363 364 8.425577 TTCAACTTTTGTTCACTGTTTTCAAA 57.574 26.923 0.00 0.00 41.35 2.69
392 393 7.326454 TGTTCATCAAATGGAAAGTTTGTTCA 58.674 30.769 0.00 0.00 37.70 3.18
394 395 8.829612 GTTCATCAAATGGAAAGTTTGTTCATT 58.170 29.630 0.00 0.00 37.70 2.57
457 458 9.689976 TCATAAAATTCAAAATGTGTTCATCGT 57.310 25.926 0.00 0.00 32.56 3.73
504 505 9.545105 AATACAAAATTTGTTCATCAAGCTCAA 57.455 25.926 16.99 0.00 42.22 3.02
505 506 7.846644 ACAAAATTTGTTCATCAAGCTCAAA 57.153 28.000 5.41 0.00 42.22 2.69
794 795 9.685828 TTAATAAGAACGAAAATGAAAACAGGG 57.314 29.630 0.00 0.00 0.00 4.45
795 796 5.845391 AAGAACGAAAATGAAAACAGGGA 57.155 34.783 0.00 0.00 0.00 4.20
796 797 5.438761 AGAACGAAAATGAAAACAGGGAG 57.561 39.130 0.00 0.00 0.00 4.30
798 799 2.031157 ACGAAAATGAAAACAGGGAGCG 60.031 45.455 0.00 0.00 0.00 5.03
799 800 2.328473 GAAAATGAAAACAGGGAGCGC 58.672 47.619 0.00 0.00 0.00 5.92
910 911 3.319198 GGTCGCTCCCCACTTCCA 61.319 66.667 0.00 0.00 0.00 3.53
915 916 1.541310 CGCTCCCCACTTCCACACTA 61.541 60.000 0.00 0.00 0.00 2.74
917 918 1.938585 CTCCCCACTTCCACACTAGA 58.061 55.000 0.00 0.00 0.00 2.43
918 919 1.550976 CTCCCCACTTCCACACTAGAC 59.449 57.143 0.00 0.00 0.00 2.59
921 922 1.348064 CCACTTCCACACTAGACCCA 58.652 55.000 0.00 0.00 0.00 4.51
923 924 2.305927 CCACTTCCACACTAGACCCAAT 59.694 50.000 0.00 0.00 0.00 3.16
924 925 3.600388 CACTTCCACACTAGACCCAATC 58.400 50.000 0.00 0.00 0.00 2.67
925 926 2.572104 ACTTCCACACTAGACCCAATCC 59.428 50.000 0.00 0.00 0.00 3.01
928 929 3.256704 TCCACACTAGACCCAATCCTTT 58.743 45.455 0.00 0.00 0.00 3.11
930 931 4.105697 TCCACACTAGACCCAATCCTTTTT 59.894 41.667 0.00 0.00 0.00 1.94
931 932 4.459337 CCACACTAGACCCAATCCTTTTTC 59.541 45.833 0.00 0.00 0.00 2.29
932 933 4.459337 CACACTAGACCCAATCCTTTTTCC 59.541 45.833 0.00 0.00 0.00 3.13
934 935 3.660669 ACTAGACCCAATCCTTTTTCCCA 59.339 43.478 0.00 0.00 0.00 4.37
937 938 3.142028 AGACCCAATCCTTTTTCCCAGAA 59.858 43.478 0.00 0.00 0.00 3.02
965 966 5.428184 AAAAGAAGTCGATCCAATCCTCT 57.572 39.130 0.00 0.00 0.00 3.69
967 968 2.697751 AGAAGTCGATCCAATCCTCTGG 59.302 50.000 0.00 0.00 37.87 3.86
969 970 1.062886 AGTCGATCCAATCCTCTGGGA 60.063 52.381 0.00 0.00 46.81 4.37
970 971 1.342819 GTCGATCCAATCCTCTGGGAG 59.657 57.143 0.00 0.00 45.86 4.30
971 972 0.034616 CGATCCAATCCTCTGGGAGC 59.965 60.000 0.00 0.00 45.86 4.70
972 973 0.399833 GATCCAATCCTCTGGGAGCC 59.600 60.000 0.00 0.00 45.86 4.70
973 974 1.064824 ATCCAATCCTCTGGGAGCCC 61.065 60.000 0.00 0.00 45.86 5.19
974 975 2.761465 CCAATCCTCTGGGAGCCCC 61.761 68.421 2.49 3.42 45.86 5.80
995 996 1.668867 GCCCTAGCTCGATTCCTCC 59.331 63.158 0.00 0.00 35.50 4.30
996 997 0.830023 GCCCTAGCTCGATTCCTCCT 60.830 60.000 0.00 0.00 35.50 3.69
997 998 1.710816 CCCTAGCTCGATTCCTCCTT 58.289 55.000 0.00 0.00 0.00 3.36
999 1000 1.616374 CCTAGCTCGATTCCTCCTTCC 59.384 57.143 0.00 0.00 0.00 3.46
1000 1001 2.311463 CTAGCTCGATTCCTCCTTCCA 58.689 52.381 0.00 0.00 0.00 3.53
1001 1002 1.799933 AGCTCGATTCCTCCTTCCAT 58.200 50.000 0.00 0.00 0.00 3.41
1002 1003 1.415659 AGCTCGATTCCTCCTTCCATG 59.584 52.381 0.00 0.00 0.00 3.66
1004 1005 0.469917 TCGATTCCTCCTTCCATGGC 59.530 55.000 6.96 0.00 0.00 4.40
1005 1006 0.536006 CGATTCCTCCTTCCATGGCC 60.536 60.000 6.96 0.00 0.00 5.36
1008 1009 4.883354 CCTCCTTCCATGGCCGGC 62.883 72.222 21.18 21.18 0.00 6.13
1034 3644 2.125832 CGGCGGCGGTTCTTCTTA 60.126 61.111 25.36 0.00 0.00 2.10
1038 3648 0.656259 GCGGCGGTTCTTCTTATTCC 59.344 55.000 9.78 0.00 0.00 3.01
1071 4431 4.144727 GAGGAGGGGAGGGCGAGA 62.145 72.222 0.00 0.00 0.00 4.04
1093 4453 2.821810 GGGCTCGGAAGAAGCAGC 60.822 66.667 0.00 0.00 41.32 5.25
1107 4473 2.671963 CAGCAGCAGCAGCAGGAA 60.672 61.111 12.92 0.00 45.49 3.36
1111 4477 2.046120 AGCAGCAGCAGGAAGAGC 60.046 61.111 3.17 0.00 45.49 4.09
1119 4485 0.612744 AGCAGGAAGAGCAGGAAGAC 59.387 55.000 0.00 0.00 0.00 3.01
1216 4583 3.432588 ACTCCACGCTCGACCTCG 61.433 66.667 0.00 0.00 41.45 4.63
1236 4603 2.040606 ATGGAGTGTACGCCCCCT 59.959 61.111 4.33 0.00 34.71 4.79
1237 4604 1.615424 ATGGAGTGTACGCCCCCTT 60.615 57.895 4.33 1.78 34.71 3.95
1238 4605 1.205460 ATGGAGTGTACGCCCCCTTT 61.205 55.000 4.33 0.00 34.71 3.11
1247 4626 2.038975 GCCCCCTTTTCCCTTCCC 59.961 66.667 0.00 0.00 0.00 3.97
1248 4627 2.863970 GCCCCCTTTTCCCTTCCCA 61.864 63.158 0.00 0.00 0.00 4.37
1251 4630 1.010795 CCCCTTTTCCCTTCCCATCT 58.989 55.000 0.00 0.00 0.00 2.90
1257 4636 2.781681 TTCCCTTCCCATCTTTCGAC 57.218 50.000 0.00 0.00 0.00 4.20
1258 4637 1.651737 TCCCTTCCCATCTTTCGACA 58.348 50.000 0.00 0.00 0.00 4.35
1260 4639 1.279271 CCCTTCCCATCTTTCGACAGT 59.721 52.381 0.00 0.00 0.00 3.55
1261 4640 2.350522 CCTTCCCATCTTTCGACAGTG 58.649 52.381 0.00 0.00 0.00 3.66
1262 4641 2.350522 CTTCCCATCTTTCGACAGTGG 58.649 52.381 11.15 11.15 0.00 4.00
1263 4642 3.159298 CCCATCTTTCGACAGTGGG 57.841 57.895 18.59 18.59 43.16 4.61
1299 4746 6.753107 TTAGTTTGGCAACCTATTTCTAGC 57.247 37.500 5.28 0.00 32.70 3.42
1304 4751 3.009033 TGGCAACCTATTTCTAGCTGTGT 59.991 43.478 0.00 0.00 0.00 3.72
1310 4757 4.772624 ACCTATTTCTAGCTGTGTGTCTGA 59.227 41.667 0.00 0.00 0.00 3.27
1348 4827 4.568072 AATCGCCCCTTATATGTGCATA 57.432 40.909 0.00 0.00 0.00 3.14
1372 4851 2.525368 AGTCCATGTTTTGCCTAACCC 58.475 47.619 0.00 0.00 0.00 4.11
1373 4852 2.110011 AGTCCATGTTTTGCCTAACCCT 59.890 45.455 0.00 0.00 0.00 4.34
1374 4853 3.332485 AGTCCATGTTTTGCCTAACCCTA 59.668 43.478 0.00 0.00 0.00 3.53
1376 4855 4.082408 GTCCATGTTTTGCCTAACCCTAAC 60.082 45.833 0.00 0.00 0.00 2.34
1377 4856 4.086457 CCATGTTTTGCCTAACCCTAACT 58.914 43.478 0.00 0.00 0.00 2.24
1380 4859 4.794334 TGTTTTGCCTAACCCTAACTGAA 58.206 39.130 0.00 0.00 0.00 3.02
1381 4860 5.390387 TGTTTTGCCTAACCCTAACTGAAT 58.610 37.500 0.00 0.00 0.00 2.57
1382 4861 6.544650 TGTTTTGCCTAACCCTAACTGAATA 58.455 36.000 0.00 0.00 0.00 1.75
1383 4862 7.179269 TGTTTTGCCTAACCCTAACTGAATAT 58.821 34.615 0.00 0.00 0.00 1.28
1384 4863 7.122055 TGTTTTGCCTAACCCTAACTGAATATG 59.878 37.037 0.00 0.00 0.00 1.78
1385 4864 6.569127 TTGCCTAACCCTAACTGAATATGA 57.431 37.500 0.00 0.00 0.00 2.15
1424 4952 7.012327 TGCTATATGATGTTTTGCCTAACTGAC 59.988 37.037 0.58 0.00 0.00 3.51
1433 4961 4.720649 TTGCCTAACTGACTAGTGCTAG 57.279 45.455 0.00 4.80 37.19 3.42
1434 4962 2.427453 TGCCTAACTGACTAGTGCTAGC 59.573 50.000 8.10 8.10 37.19 3.42
1435 4963 2.691011 GCCTAACTGACTAGTGCTAGCT 59.309 50.000 17.23 0.00 37.19 3.32
1436 4964 3.243267 GCCTAACTGACTAGTGCTAGCTC 60.243 52.174 17.23 12.88 37.19 4.09
1437 4965 4.204012 CCTAACTGACTAGTGCTAGCTCT 58.796 47.826 21.91 21.91 37.19 4.09
1439 4967 1.748493 ACTGACTAGTGCTAGCTCTGC 59.252 52.381 25.70 16.13 36.66 4.26
1440 4968 2.023673 CTGACTAGTGCTAGCTCTGCT 58.976 52.381 25.70 15.62 43.41 4.24
1441 4969 3.210227 CTGACTAGTGCTAGCTCTGCTA 58.790 50.000 25.70 15.86 40.44 3.49
1453 4981 4.098914 AGCTCTGCTAGTAGATACTGCT 57.901 45.455 11.22 12.87 36.99 4.24
1455 4983 3.818210 GCTCTGCTAGTAGATACTGCTGA 59.182 47.826 11.22 15.76 37.10 4.26
1456 4984 4.083324 GCTCTGCTAGTAGATACTGCTGAG 60.083 50.000 25.52 25.52 45.35 3.35
1457 4985 5.042463 TCTGCTAGTAGATACTGCTGAGT 57.958 43.478 6.42 0.00 37.10 3.41
1458 4986 6.176014 TCTGCTAGTAGATACTGCTGAGTA 57.824 41.667 6.42 0.00 39.07 2.59
1459 4987 6.227522 TCTGCTAGTAGATACTGCTGAGTAG 58.772 44.000 6.42 0.00 38.11 2.57
1460 4988 6.042208 TCTGCTAGTAGATACTGCTGAGTAGA 59.958 42.308 6.42 10.00 38.11 2.59
1461 4989 6.774673 TGCTAGTAGATACTGCTGAGTAGAT 58.225 40.000 4.11 0.00 38.11 1.98
1463 4991 6.093495 GCTAGTAGATACTGCTGAGTAGATGG 59.907 46.154 4.11 0.00 38.11 3.51
1464 4992 6.194285 AGTAGATACTGCTGAGTAGATGGA 57.806 41.667 4.11 0.00 38.11 3.41
1465 4993 6.001460 AGTAGATACTGCTGAGTAGATGGAC 58.999 44.000 4.11 0.00 38.11 4.02
1468 4996 3.601443 ACTGCTGAGTAGATGGACAAC 57.399 47.619 4.11 0.00 0.00 3.32
1469 4997 3.169099 ACTGCTGAGTAGATGGACAACT 58.831 45.455 4.11 0.00 0.00 3.16
1472 5000 5.423610 ACTGCTGAGTAGATGGACAACTAAT 59.576 40.000 4.11 0.00 0.00 1.73
1473 5001 6.070538 ACTGCTGAGTAGATGGACAACTAATT 60.071 38.462 4.11 0.00 0.00 1.40
1474 5002 6.711277 TGCTGAGTAGATGGACAACTAATTT 58.289 36.000 0.00 0.00 0.00 1.82
1475 5003 7.168219 TGCTGAGTAGATGGACAACTAATTTT 58.832 34.615 0.00 0.00 0.00 1.82
1477 5005 7.334421 GCTGAGTAGATGGACAACTAATTTTGA 59.666 37.037 0.00 0.00 0.00 2.69
1478 5006 8.777865 TGAGTAGATGGACAACTAATTTTGAG 57.222 34.615 0.00 0.00 0.00 3.02
1479 5007 7.824289 TGAGTAGATGGACAACTAATTTTGAGG 59.176 37.037 0.00 0.00 0.00 3.86
1480 5008 7.918076 AGTAGATGGACAACTAATTTTGAGGA 58.082 34.615 0.00 0.00 0.00 3.71
1481 5009 7.824779 AGTAGATGGACAACTAATTTTGAGGAC 59.175 37.037 0.00 0.00 0.00 3.85
1482 5010 6.784031 AGATGGACAACTAATTTTGAGGACT 58.216 36.000 0.00 0.00 0.00 3.85
1483 5011 7.918076 AGATGGACAACTAATTTTGAGGACTA 58.082 34.615 0.00 0.00 0.00 2.59
1484 5012 8.043710 AGATGGACAACTAATTTTGAGGACTAG 58.956 37.037 0.00 0.00 0.00 2.57
1485 5013 7.074653 TGGACAACTAATTTTGAGGACTAGT 57.925 36.000 0.00 0.00 0.00 2.57
1486 5014 7.514721 TGGACAACTAATTTTGAGGACTAGTT 58.485 34.615 0.00 0.00 34.03 2.24
1497 5107 7.687941 TTTGAGGACTAGTTTGATTCATTCC 57.312 36.000 0.00 0.00 0.00 3.01
1500 5110 5.665459 AGGACTAGTTTGATTCATTCCTCG 58.335 41.667 0.00 0.00 0.00 4.63
1501 5111 5.187967 AGGACTAGTTTGATTCATTCCTCGT 59.812 40.000 0.00 0.00 0.00 4.18
1502 5112 5.875359 GGACTAGTTTGATTCATTCCTCGTT 59.125 40.000 0.00 0.00 0.00 3.85
1503 5113 6.036191 GGACTAGTTTGATTCATTCCTCGTTC 59.964 42.308 0.00 0.00 0.00 3.95
1505 5115 4.911390 AGTTTGATTCATTCCTCGTTCCT 58.089 39.130 0.00 0.00 0.00 3.36
1506 5116 4.938226 AGTTTGATTCATTCCTCGTTCCTC 59.062 41.667 0.00 0.00 0.00 3.71
1507 5117 4.551702 TTGATTCATTCCTCGTTCCTCA 57.448 40.909 0.00 0.00 0.00 3.86
1509 5119 5.102953 TGATTCATTCCTCGTTCCTCATT 57.897 39.130 0.00 0.00 0.00 2.57
1510 5120 5.118990 TGATTCATTCCTCGTTCCTCATTC 58.881 41.667 0.00 0.00 0.00 2.67
1511 5121 4.551702 TTCATTCCTCGTTCCTCATTCA 57.448 40.909 0.00 0.00 0.00 2.57
1515 5125 6.830912 TCATTCCTCGTTCCTCATTCATAAT 58.169 36.000 0.00 0.00 0.00 1.28
1516 5126 7.282585 TCATTCCTCGTTCCTCATTCATAATT 58.717 34.615 0.00 0.00 0.00 1.40
1517 5127 7.775093 TCATTCCTCGTTCCTCATTCATAATTT 59.225 33.333 0.00 0.00 0.00 1.82
1518 5128 9.056005 CATTCCTCGTTCCTCATTCATAATTTA 57.944 33.333 0.00 0.00 0.00 1.40
1519 5129 9.799106 ATTCCTCGTTCCTCATTCATAATTTAT 57.201 29.630 0.00 0.00 0.00 1.40
1522 5132 9.277783 CCTCGTTCCTCATTCATAATTTATTCT 57.722 33.333 0.00 0.00 0.00 2.40
1525 5135 9.884465 CGTTCCTCATTCATAATTTATTCTTCC 57.116 33.333 0.00 0.00 0.00 3.46
1572 5318 2.287915 GCGATGCACAATACTAACAGGG 59.712 50.000 0.00 0.00 0.00 4.45
1628 5374 2.614057 GGCAAATATTGTCTCGGTCAGG 59.386 50.000 0.00 0.00 31.13 3.86
1632 5378 5.605534 CAAATATTGTCTCGGTCAGGATCT 58.394 41.667 0.00 0.00 0.00 2.75
1679 5429 2.245159 ATGTCTACGGCACCATCATG 57.755 50.000 0.00 0.00 0.00 3.07
1694 5444 0.842030 TCATGGCCAGGGACAGTCTT 60.842 55.000 18.94 0.00 36.12 3.01
1854 5608 5.523552 CGACATATATGCACTTGTTTCCTCA 59.476 40.000 12.79 0.00 0.00 3.86
1940 5694 5.184671 TGCTTGTGGTTTGCATCATGTTATA 59.815 36.000 0.00 0.00 0.00 0.98
1941 5695 5.516339 GCTTGTGGTTTGCATCATGTTATAC 59.484 40.000 0.00 0.00 0.00 1.47
1974 5728 3.499338 TGCAGGAACACCATTCATTCTT 58.501 40.909 0.00 0.00 0.00 2.52
1976 5730 4.240096 GCAGGAACACCATTCATTCTTTG 58.760 43.478 0.00 0.00 0.00 2.77
2053 5807 2.973694 TAATGAACCTGGTAGACGGC 57.026 50.000 0.00 0.00 0.00 5.68
2063 5817 6.930068 ACCTGGTAGACGGCTATATTAATT 57.070 37.500 0.00 0.00 0.00 1.40
2104 5860 8.334522 AGTACTATCTAAGAAGACTAGTCCCA 57.665 38.462 19.38 0.00 33.57 4.37
2105 5861 8.780003 AGTACTATCTAAGAAGACTAGTCCCAA 58.220 37.037 19.38 4.03 33.57 4.12
2289 6078 0.250727 TTTTGACTGGCCCGAAGAGG 60.251 55.000 0.00 0.00 40.63 3.69
2599 6400 2.230508 AGCAGCTTTCCATGTGACATTG 59.769 45.455 0.00 0.00 0.00 2.82
2643 6444 1.661341 GGATGCTAACAGCTGGTGAG 58.339 55.000 16.44 10.90 42.97 3.51
2649 6450 1.488705 TAACAGCTGGTGAGGGTGGG 61.489 60.000 16.44 0.00 36.62 4.61
2733 6534 0.250467 CTGCTGCTACCAGTGGTGTT 60.250 55.000 25.64 0.00 41.26 3.32
2863 6664 1.074775 TCACCTGGTCCATTGTGCC 59.925 57.895 14.14 0.00 0.00 5.01
2867 6668 1.003355 CTGGTCCATTGTGCCTCGT 60.003 57.895 0.00 0.00 0.00 4.18
2928 6733 2.378445 TGTGTGTGCGCTGTATATGT 57.622 45.000 9.73 0.00 0.00 2.29
2932 6737 3.615056 GTGTGTGCGCTGTATATGTTGTA 59.385 43.478 9.73 0.00 0.00 2.41
2933 6738 3.615056 TGTGTGCGCTGTATATGTTGTAC 59.385 43.478 9.73 0.00 0.00 2.90
2934 6739 3.863424 GTGTGCGCTGTATATGTTGTACT 59.137 43.478 9.73 0.00 0.00 2.73
2935 6740 4.026804 GTGTGCGCTGTATATGTTGTACTC 60.027 45.833 9.73 0.00 0.00 2.59
2936 6741 3.489785 GTGCGCTGTATATGTTGTACTCC 59.510 47.826 9.73 0.00 0.00 3.85
2937 6742 3.057734 GCGCTGTATATGTTGTACTCCC 58.942 50.000 0.00 0.00 0.00 4.30
2938 6743 3.243771 GCGCTGTATATGTTGTACTCCCT 60.244 47.826 0.00 0.00 0.00 4.20
2939 6744 4.547532 CGCTGTATATGTTGTACTCCCTC 58.452 47.826 0.00 0.00 0.00 4.30
2940 6745 4.558898 CGCTGTATATGTTGTACTCCCTCC 60.559 50.000 0.00 0.00 0.00 4.30
2941 6746 4.344102 GCTGTATATGTTGTACTCCCTCCA 59.656 45.833 0.00 0.00 0.00 3.86
2942 6747 5.012148 GCTGTATATGTTGTACTCCCTCCAT 59.988 44.000 0.00 0.00 0.00 3.41
2943 6748 6.665992 TGTATATGTTGTACTCCCTCCATC 57.334 41.667 0.00 0.00 0.00 3.51
2944 6749 5.542635 TGTATATGTTGTACTCCCTCCATCC 59.457 44.000 0.00 0.00 0.00 3.51
2945 6750 2.335681 TGTTGTACTCCCTCCATCCA 57.664 50.000 0.00 0.00 0.00 3.41
2946 6751 2.845659 TGTTGTACTCCCTCCATCCAT 58.154 47.619 0.00 0.00 0.00 3.41
2947 6752 4.002256 TGTTGTACTCCCTCCATCCATA 57.998 45.455 0.00 0.00 0.00 2.74
2948 6753 4.367166 TGTTGTACTCCCTCCATCCATAA 58.633 43.478 0.00 0.00 0.00 1.90
2949 6754 4.975147 TGTTGTACTCCCTCCATCCATAAT 59.025 41.667 0.00 0.00 0.00 1.28
2950 6755 5.163205 TGTTGTACTCCCTCCATCCATAATG 60.163 44.000 0.00 0.00 34.93 1.90
2951 6756 3.327757 TGTACTCCCTCCATCCATAATGC 59.672 47.826 0.00 0.00 33.71 3.56
2952 6757 2.421725 ACTCCCTCCATCCATAATGCA 58.578 47.619 0.00 0.00 33.71 3.96
2953 6758 2.374504 ACTCCCTCCATCCATAATGCAG 59.625 50.000 0.00 0.00 33.71 4.41
2954 6759 2.374504 CTCCCTCCATCCATAATGCAGT 59.625 50.000 0.00 0.00 33.71 4.40
2955 6760 2.107031 TCCCTCCATCCATAATGCAGTG 59.893 50.000 0.00 0.00 33.71 3.66
2956 6761 2.158564 CCCTCCATCCATAATGCAGTGT 60.159 50.000 0.00 0.00 33.71 3.55
2957 6762 3.144506 CCTCCATCCATAATGCAGTGTC 58.855 50.000 0.00 0.00 33.71 3.67
2958 6763 3.434024 CCTCCATCCATAATGCAGTGTCA 60.434 47.826 0.00 0.00 33.71 3.58
2959 6764 4.201657 CTCCATCCATAATGCAGTGTCAA 58.798 43.478 0.00 0.00 33.71 3.18
2960 6765 4.598022 TCCATCCATAATGCAGTGTCAAA 58.402 39.130 0.00 0.00 33.71 2.69
2961 6766 5.015515 TCCATCCATAATGCAGTGTCAAAA 58.984 37.500 0.00 0.00 33.71 2.44
2962 6767 5.479724 TCCATCCATAATGCAGTGTCAAAAA 59.520 36.000 0.00 0.00 33.71 1.94
2996 6801 3.278668 TGAGACGGAGGGAGTACTAAG 57.721 52.381 0.00 0.00 0.00 2.18
3037 6842 7.094377 TGGTGGAAGCTTAATTATCACTGTTTC 60.094 37.037 0.00 0.00 33.76 2.78
3061 6866 4.924305 TGTTACCACTCTGTTCGTTACT 57.076 40.909 0.00 0.00 0.00 2.24
3070 6875 5.061853 ACTCTGTTCGTTACTACTGAGTGA 58.938 41.667 18.37 0.00 45.70 3.41
3072 6877 4.454847 TCTGTTCGTTACTACTGAGTGAGG 59.545 45.833 0.00 0.00 36.28 3.86
3075 6880 5.764686 TGTTCGTTACTACTGAGTGAGGTAA 59.235 40.000 0.00 0.00 36.28 2.85
3095 6908 4.623932 AAGAATTATCCGGCATGAGCTA 57.376 40.909 0.00 0.00 41.70 3.32
3105 6918 2.421619 GGCATGAGCTATGAAGTAGGC 58.578 52.381 0.00 0.00 39.21 3.93
3106 6919 2.038295 GGCATGAGCTATGAAGTAGGCT 59.962 50.000 0.00 0.00 39.21 4.58
3107 6920 3.259374 GGCATGAGCTATGAAGTAGGCTA 59.741 47.826 0.00 0.00 39.21 3.93
3108 6921 4.081198 GGCATGAGCTATGAAGTAGGCTAT 60.081 45.833 0.00 0.00 39.21 2.97
3109 6922 4.869297 GCATGAGCTATGAAGTAGGCTATG 59.131 45.833 0.00 0.00 39.21 2.23
3110 6923 5.337089 GCATGAGCTATGAAGTAGGCTATGA 60.337 44.000 0.00 0.00 39.21 2.15
3113 6926 5.835819 TGAGCTATGAAGTAGGCTATGAAGT 59.164 40.000 0.00 0.00 0.00 3.01
3114 6927 7.004691 TGAGCTATGAAGTAGGCTATGAAGTA 58.995 38.462 0.00 0.00 0.00 2.24
3115 6928 7.175816 TGAGCTATGAAGTAGGCTATGAAGTAG 59.824 40.741 0.00 0.24 0.00 2.57
3116 6929 6.435904 AGCTATGAAGTAGGCTATGAAGTAGG 59.564 42.308 0.00 0.00 0.00 3.18
3117 6930 6.434652 GCTATGAAGTAGGCTATGAAGTAGGA 59.565 42.308 0.00 0.00 0.00 2.94
3118 6931 6.658188 ATGAAGTAGGCTATGAAGTAGGAC 57.342 41.667 0.00 0.00 0.00 3.85
3119 6932 4.579340 TGAAGTAGGCTATGAAGTAGGACG 59.421 45.833 0.00 0.00 0.00 4.79
3120 6933 4.434545 AGTAGGCTATGAAGTAGGACGA 57.565 45.455 0.00 0.00 0.00 4.20
3121 6934 4.789807 AGTAGGCTATGAAGTAGGACGAA 58.210 43.478 0.00 0.00 0.00 3.85
3122 6935 4.579753 AGTAGGCTATGAAGTAGGACGAAC 59.420 45.833 0.00 0.00 0.00 3.95
3123 6936 3.362706 AGGCTATGAAGTAGGACGAACA 58.637 45.455 0.00 0.00 0.00 3.18
3124 6937 3.381908 AGGCTATGAAGTAGGACGAACAG 59.618 47.826 0.00 0.00 0.00 3.16
3125 6938 3.380637 GGCTATGAAGTAGGACGAACAGA 59.619 47.826 0.00 0.00 0.00 3.41
3126 6939 4.352887 GCTATGAAGTAGGACGAACAGAC 58.647 47.826 0.00 0.00 0.00 3.51
3127 6940 4.142447 GCTATGAAGTAGGACGAACAGACA 60.142 45.833 0.00 0.00 0.00 3.41
3135 6948 2.936498 AGGACGAACAGACAAAAGTGTG 59.064 45.455 0.00 0.00 38.41 3.82
3168 6981 3.624326 TGATTTTGTTTCAGCACTCGG 57.376 42.857 0.00 0.00 0.00 4.63
3185 6998 2.226330 TCGGGTCTTGAAAATGTGGTG 58.774 47.619 0.00 0.00 0.00 4.17
3189 7002 4.379394 CGGGTCTTGAAAATGTGGTGTATG 60.379 45.833 0.00 0.00 0.00 2.39
3208 7026 4.985044 ATGTAGTTCCGTTCTTTCAACG 57.015 40.909 0.00 0.00 42.74 4.10
3209 7027 2.540931 TGTAGTTCCGTTCTTTCAACGC 59.459 45.455 1.31 0.00 41.85 4.84
3211 7029 1.329599 AGTTCCGTTCTTTCAACGCAC 59.670 47.619 1.31 1.29 41.85 5.34
3226 7044 2.188829 GCACAGCTCTGGCACACAA 61.189 57.895 1.66 0.00 41.70 3.33
3227 7045 1.521450 GCACAGCTCTGGCACACAAT 61.521 55.000 1.66 0.00 41.70 2.71
3265 7166 5.130975 TGCAGGATAGATAACACCAGAATGT 59.869 40.000 0.00 0.00 0.00 2.71
3269 7170 6.000219 GGATAGATAACACCAGAATGTGCAT 59.000 40.000 0.00 0.00 39.93 3.96
3270 7171 7.016563 AGGATAGATAACACCAGAATGTGCATA 59.983 37.037 0.00 0.00 39.93 3.14
3272 7173 9.224267 GATAGATAACACCAGAATGTGCATATT 57.776 33.333 8.59 8.59 39.93 1.28
3273 7174 7.502120 AGATAACACCAGAATGTGCATATTC 57.498 36.000 24.16 24.16 39.93 1.75
3317 7218 3.689309 TGTACATGTGTGTGCAAACTG 57.311 42.857 9.11 0.58 45.95 3.16
3325 7226 3.171277 GTGTGTGCAAACTGAACTTGTC 58.829 45.455 8.83 0.00 0.00 3.18
3328 7229 2.351418 TGTGCAAACTGAACTTGTCTCG 59.649 45.455 0.00 0.00 0.00 4.04
3339 7240 4.511454 TGAACTTGTCTCGATTCCACTTTG 59.489 41.667 0.00 0.00 0.00 2.77
3340 7241 4.336889 ACTTGTCTCGATTCCACTTTGA 57.663 40.909 0.00 0.00 0.00 2.69
3341 7242 4.058817 ACTTGTCTCGATTCCACTTTGAC 58.941 43.478 0.00 0.00 0.00 3.18
3342 7243 2.672714 TGTCTCGATTCCACTTTGACG 58.327 47.619 0.00 0.00 0.00 4.35
3343 7244 1.390463 GTCTCGATTCCACTTTGACGC 59.610 52.381 0.00 0.00 0.00 5.19
3344 7245 0.366871 CTCGATTCCACTTTGACGCG 59.633 55.000 3.53 3.53 0.00 6.01
3346 7247 0.366871 CGATTCCACTTTGACGCGAG 59.633 55.000 15.93 0.84 0.00 5.03
3358 7259 2.849081 ACGCGAGTAATGGTTTGGG 58.151 52.632 15.93 0.00 46.88 4.12
3362 7263 2.422127 CGCGAGTAATGGTTTGGGATTT 59.578 45.455 0.00 0.00 0.00 2.17
3365 7266 4.743493 CGAGTAATGGTTTGGGATTTTGG 58.257 43.478 0.00 0.00 0.00 3.28
3366 7267 4.461081 CGAGTAATGGTTTGGGATTTTGGA 59.539 41.667 0.00 0.00 0.00 3.53
3367 7268 5.047660 CGAGTAATGGTTTGGGATTTTGGAA 60.048 40.000 0.00 0.00 0.00 3.53
3368 7269 6.350949 CGAGTAATGGTTTGGGATTTTGGAAT 60.351 38.462 0.00 0.00 0.00 3.01
3369 7270 6.710278 AGTAATGGTTTGGGATTTTGGAATG 58.290 36.000 0.00 0.00 0.00 2.67
3403 7304 0.690192 TGAAAGGAATGCGGAGGTGA 59.310 50.000 0.00 0.00 0.00 4.02
3419 7320 2.437281 AGGTGACAGGCCTGAATGATAG 59.563 50.000 39.19 10.62 34.56 2.08
3420 7321 2.435805 GGTGACAGGCCTGAATGATAGA 59.564 50.000 39.19 9.89 0.00 1.98
3421 7322 3.072184 GGTGACAGGCCTGAATGATAGAT 59.928 47.826 39.19 13.54 0.00 1.98
3422 7323 4.284490 GGTGACAGGCCTGAATGATAGATA 59.716 45.833 39.19 9.04 0.00 1.98
3424 7325 5.698545 GTGACAGGCCTGAATGATAGATAAC 59.301 44.000 39.19 12.71 0.00 1.89
3425 7326 5.366477 TGACAGGCCTGAATGATAGATAACA 59.634 40.000 39.19 14.51 0.00 2.41
3429 7330 7.455953 ACAGGCCTGAATGATAGATAACAGATA 59.544 37.037 39.19 0.00 0.00 1.98
3458 7361 4.073169 TGCAATAACATTTCCGACGTTC 57.927 40.909 0.00 0.00 0.00 3.95
3464 7367 1.871039 ACATTTCCGACGTTCCAGTTG 59.129 47.619 0.00 0.00 0.00 3.16
3470 7373 1.871039 CCGACGTTCCAGTTGACAAAT 59.129 47.619 0.00 0.00 0.00 2.32
3471 7374 3.061322 CCGACGTTCCAGTTGACAAATA 58.939 45.455 0.00 0.00 0.00 1.40
3472 7375 3.120786 CCGACGTTCCAGTTGACAAATAC 60.121 47.826 0.00 0.00 0.00 1.89
3473 7376 3.739300 CGACGTTCCAGTTGACAAATACT 59.261 43.478 0.00 0.00 0.00 2.12
3474 7377 4.210537 CGACGTTCCAGTTGACAAATACTT 59.789 41.667 0.00 0.00 0.00 2.24
3515 7513 4.036380 ACAACCAACAACAACTAAGCTAGC 59.964 41.667 6.62 6.62 0.00 3.42
3527 7530 6.263168 ACAACTAAGCTAGCACAAACTTTGAT 59.737 34.615 18.83 0.00 0.00 2.57
3534 7537 5.748152 GCTAGCACAAACTTTGATTTGAACA 59.252 36.000 10.63 0.00 41.28 3.18
3567 7615 5.992729 TGATCGACACATGCATTTCATATG 58.007 37.500 0.00 0.00 35.75 1.78
3569 7617 6.428771 TGATCGACACATGCATTTCATATGAT 59.571 34.615 6.17 0.00 33.38 2.45
3573 7621 9.434420 TCGACACATGCATTTCATATGATATTA 57.566 29.630 6.17 0.00 33.38 0.98
3597 8916 9.841295 TTATTAGTATTAGGACAATGAACCCAC 57.159 33.333 0.00 0.00 0.00 4.61
3622 8960 3.335579 GCTTTCAACACTAGTACAGGGG 58.664 50.000 0.00 0.00 28.64 4.79
3623 8961 3.335579 CTTTCAACACTAGTACAGGGGC 58.664 50.000 0.00 0.00 28.64 5.80
3624 8962 2.018355 TCAACACTAGTACAGGGGCA 57.982 50.000 0.00 0.00 28.64 5.36
3625 8963 1.899814 TCAACACTAGTACAGGGGCAG 59.100 52.381 0.00 0.00 28.64 4.85
3626 8964 0.613777 AACACTAGTACAGGGGCAGC 59.386 55.000 0.00 0.00 28.64 5.25
3627 8965 0.544357 ACACTAGTACAGGGGCAGCA 60.544 55.000 0.00 0.00 28.64 4.41
3628 8966 0.176680 CACTAGTACAGGGGCAGCAG 59.823 60.000 0.00 0.00 0.00 4.24
3661 9009 2.751166 AACCTCAGACCTCATCAACG 57.249 50.000 0.00 0.00 0.00 4.10
3788 9138 5.186198 TGCAGGTTTAAGCTAATCCTTCTC 58.814 41.667 0.00 0.00 36.08 2.87
3796 9146 4.213564 AGCTAATCCTTCTCAACACCAG 57.786 45.455 0.00 0.00 0.00 4.00
3801 9151 0.322008 CCTTCTCAACACCAGCTCCC 60.322 60.000 0.00 0.00 0.00 4.30
3805 9155 0.976641 CTCAACACCAGCTCCCACTA 59.023 55.000 0.00 0.00 0.00 2.74
3824 9174 1.948104 AAGAGCACGTAAACACTGCA 58.052 45.000 0.00 0.00 33.06 4.41
3841 9191 0.933097 GCATAGTGCACAGATGTCGG 59.067 55.000 24.44 7.64 44.26 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 193 9.825972 TTCGATGAACAAGAGAATAATTTGAAC 57.174 29.630 0.00 0.00 0.00 3.18
326 327 9.381033 TGAACAAAAGTTGAATTTGATGAACAT 57.619 25.926 6.05 0.00 39.56 2.71
327 328 8.655092 GTGAACAAAAGTTGAATTTGATGAACA 58.345 29.630 6.05 0.00 39.56 3.18
328 329 8.872845 AGTGAACAAAAGTTGAATTTGATGAAC 58.127 29.630 6.05 0.00 39.56 3.18
331 332 8.188531 ACAGTGAACAAAAGTTGAATTTGATG 57.811 30.769 0.00 0.00 39.56 3.07
333 334 8.600449 AAACAGTGAACAAAAGTTGAATTTGA 57.400 26.923 0.00 0.00 39.56 2.69
334 335 9.316859 GAAAACAGTGAACAAAAGTTGAATTTG 57.683 29.630 0.00 0.00 42.18 2.32
335 336 9.050601 TGAAAACAGTGAACAAAAGTTGAATTT 57.949 25.926 0.00 0.00 0.00 1.82
336 337 8.600449 TGAAAACAGTGAACAAAAGTTGAATT 57.400 26.923 0.00 0.00 0.00 2.17
363 364 9.176460 ACAAACTTTCCATTTGATGAACATTTT 57.824 25.926 4.57 0.00 39.01 1.82
367 368 7.326454 TGAACAAACTTTCCATTTGATGAACA 58.674 30.769 4.57 0.00 39.01 3.18
368 369 7.769272 TGAACAAACTTTCCATTTGATGAAC 57.231 32.000 4.57 0.00 39.01 3.18
370 371 8.202811 TCAATGAACAAACTTTCCATTTGATGA 58.797 29.630 4.57 0.00 39.01 2.92
371 372 8.367943 TCAATGAACAAACTTTCCATTTGATG 57.632 30.769 4.57 0.00 39.01 3.07
373 374 8.961294 ATTCAATGAACAAACTTTCCATTTGA 57.039 26.923 0.00 0.00 39.01 2.69
427 428 9.829507 TGAACACATTTTGAATTTTATGAACCT 57.170 25.926 0.00 0.00 0.00 3.50
431 432 9.689976 ACGATGAACACATTTTGAATTTTATGA 57.310 25.926 0.00 0.00 0.00 2.15
478 479 9.545105 TTGAGCTTGATGAACAAATTTTGTATT 57.455 25.926 14.81 0.76 44.59 1.89
480 481 8.939201 TTTGAGCTTGATGAACAAATTTTGTA 57.061 26.923 14.81 1.39 44.59 2.41
769 770 9.069082 TCCCTGTTTTCATTTTCGTTCTTATTA 57.931 29.630 0.00 0.00 0.00 0.98
772 773 6.514376 GCTCCCTGTTTTCATTTTCGTTCTTA 60.514 38.462 0.00 0.00 0.00 2.10
778 779 2.584791 CGCTCCCTGTTTTCATTTTCG 58.415 47.619 0.00 0.00 0.00 3.46
779 780 2.328473 GCGCTCCCTGTTTTCATTTTC 58.672 47.619 0.00 0.00 0.00 2.29
783 784 4.002797 GGCGCTCCCTGTTTTCAT 57.997 55.556 7.64 0.00 0.00 2.57
857 858 2.180204 CCCCTATTTGCCGCGTGAG 61.180 63.158 4.92 0.00 0.00 3.51
858 859 2.124901 CCCCTATTTGCCGCGTGA 60.125 61.111 4.92 0.00 0.00 4.35
893 894 3.319198 TGGAAGTGGGGAGCGACC 61.319 66.667 0.00 0.00 38.08 4.79
894 895 2.047179 GTGGAAGTGGGGAGCGAC 60.047 66.667 0.00 0.00 0.00 5.19
895 896 2.525629 TGTGGAAGTGGGGAGCGA 60.526 61.111 0.00 0.00 0.00 4.93
896 897 1.541310 TAGTGTGGAAGTGGGGAGCG 61.541 60.000 0.00 0.00 0.00 5.03
900 901 0.613777 GGTCTAGTGTGGAAGTGGGG 59.386 60.000 0.00 0.00 0.00 4.96
901 902 0.613777 GGGTCTAGTGTGGAAGTGGG 59.386 60.000 0.00 0.00 0.00 4.61
906 907 2.915869 AGGATTGGGTCTAGTGTGGAA 58.084 47.619 0.00 0.00 0.00 3.53
907 908 2.642171 AGGATTGGGTCTAGTGTGGA 57.358 50.000 0.00 0.00 0.00 4.02
908 909 3.721087 AAAGGATTGGGTCTAGTGTGG 57.279 47.619 0.00 0.00 0.00 4.17
909 910 4.459337 GGAAAAAGGATTGGGTCTAGTGTG 59.541 45.833 0.00 0.00 0.00 3.82
910 911 4.508584 GGGAAAAAGGATTGGGTCTAGTGT 60.509 45.833 0.00 0.00 0.00 3.55
915 916 2.721906 TCTGGGAAAAAGGATTGGGTCT 59.278 45.455 0.00 0.00 0.00 3.85
917 918 3.628832 TTCTGGGAAAAAGGATTGGGT 57.371 42.857 0.00 0.00 0.00 4.51
918 919 4.972751 TTTTCTGGGAAAAAGGATTGGG 57.027 40.909 3.38 0.00 0.00 4.12
942 943 5.645497 CAGAGGATTGGATCGACTTCTTTTT 59.355 40.000 0.00 0.00 0.00 1.94
943 944 5.181748 CAGAGGATTGGATCGACTTCTTTT 58.818 41.667 0.00 0.00 0.00 2.27
944 945 4.383552 CCAGAGGATTGGATCGACTTCTTT 60.384 45.833 0.00 0.00 40.87 2.52
946 947 2.697751 CCAGAGGATTGGATCGACTTCT 59.302 50.000 0.00 0.00 40.87 2.85
947 948 2.224161 CCCAGAGGATTGGATCGACTTC 60.224 54.545 0.00 0.00 40.87 3.01
949 950 1.062886 TCCCAGAGGATTGGATCGACT 60.063 52.381 0.00 0.00 40.87 4.18
954 955 1.064824 GGGCTCCCAGAGGATTGGAT 61.065 60.000 0.00 0.00 42.93 3.41
967 968 4.196778 GCTAGGGCTTGGGGCTCC 62.197 72.222 0.00 0.00 43.87 4.70
978 979 1.616374 GAAGGAGGAATCGAGCTAGGG 59.384 57.143 0.00 0.00 0.00 3.53
979 980 1.616374 GGAAGGAGGAATCGAGCTAGG 59.384 57.143 0.00 0.00 0.00 3.02
981 982 2.454336 TGGAAGGAGGAATCGAGCTA 57.546 50.000 0.00 0.00 0.00 3.32
985 986 0.469917 GCCATGGAAGGAGGAATCGA 59.530 55.000 18.40 0.00 0.00 3.59
986 987 0.536006 GGCCATGGAAGGAGGAATCG 60.536 60.000 18.40 0.00 0.00 3.34
987 988 0.536006 CGGCCATGGAAGGAGGAATC 60.536 60.000 18.40 0.00 0.00 2.52
988 989 1.533711 CGGCCATGGAAGGAGGAAT 59.466 57.895 18.40 0.00 0.00 3.01
991 992 4.883354 GCCGGCCATGGAAGGAGG 62.883 72.222 24.77 15.78 0.00 4.30
1034 3644 0.970937 TCTCGCCGTGGAAGAGGAAT 60.971 55.000 10.53 0.00 33.16 3.01
1038 3648 1.431440 CTCTCTCGCCGTGGAAGAG 59.569 63.158 10.79 10.79 0.00 2.85
1078 4438 2.748843 GCTGCTGCTTCTTCCGAGC 61.749 63.158 8.53 0.00 40.53 5.03
1080 4440 1.375140 CTGCTGCTGCTTCTTCCGA 60.375 57.895 17.00 0.00 40.48 4.55
1093 4453 2.400158 GCTCTTCCTGCTGCTGCTG 61.400 63.158 17.00 15.58 40.48 4.41
1107 4473 1.204113 CCCCCTTGTCTTCCTGCTCT 61.204 60.000 0.00 0.00 0.00 4.09
1111 4477 2.045926 CGCCCCCTTGTCTTCCTG 60.046 66.667 0.00 0.00 0.00 3.86
1216 4583 1.153429 GGGGCGTACACTCCATGTC 60.153 63.158 0.00 0.00 42.09 3.06
1236 4603 3.181438 TGTCGAAAGATGGGAAGGGAAAA 60.181 43.478 0.00 0.00 45.19 2.29
1237 4604 2.373836 TGTCGAAAGATGGGAAGGGAAA 59.626 45.455 0.00 0.00 45.19 3.13
1238 4605 1.982226 TGTCGAAAGATGGGAAGGGAA 59.018 47.619 0.00 0.00 45.19 3.97
1247 4626 3.594603 ACTACCCACTGTCGAAAGATG 57.405 47.619 10.30 3.98 45.19 2.90
1248 4627 4.618920 AAACTACCCACTGTCGAAAGAT 57.381 40.909 10.30 0.00 45.19 2.40
1251 4630 3.876341 ACAAAACTACCCACTGTCGAAA 58.124 40.909 0.00 0.00 0.00 3.46
1299 4746 7.484007 GCATTTAAATTCAGATCAGACACACAG 59.516 37.037 0.00 0.00 0.00 3.66
1304 4751 9.577110 GATTTGCATTTAAATTCAGATCAGACA 57.423 29.630 19.48 0.00 28.53 3.41
1353 4832 2.525368 AGGGTTAGGCAAAACATGGAC 58.475 47.619 0.00 0.00 0.00 4.02
1357 4836 4.993028 TCAGTTAGGGTTAGGCAAAACAT 58.007 39.130 5.31 0.00 0.00 2.71
1372 4851 7.974482 TGGAGCATCATTCATATTCAGTTAG 57.026 36.000 0.00 0.00 36.25 2.34
1373 4852 8.789762 CAATGGAGCATCATTCATATTCAGTTA 58.210 33.333 2.17 0.00 35.40 2.24
1374 4853 7.658261 CAATGGAGCATCATTCATATTCAGTT 58.342 34.615 2.17 0.00 35.40 3.16
1376 4855 6.071896 AGCAATGGAGCATCATTCATATTCAG 60.072 38.462 2.17 0.00 35.40 3.02
1377 4856 5.773176 AGCAATGGAGCATCATTCATATTCA 59.227 36.000 2.17 0.00 35.40 2.57
1380 4859 9.067986 CATATAGCAATGGAGCATCATTCATAT 57.932 33.333 2.17 6.31 35.40 1.78
1381 4860 8.269317 TCATATAGCAATGGAGCATCATTCATA 58.731 33.333 2.17 2.54 35.40 2.15
1382 4861 7.116736 TCATATAGCAATGGAGCATCATTCAT 58.883 34.615 2.17 0.83 35.40 2.57
1383 4862 6.478129 TCATATAGCAATGGAGCATCATTCA 58.522 36.000 2.17 0.00 35.40 2.57
1384 4863 6.997239 TCATATAGCAATGGAGCATCATTC 57.003 37.500 2.17 0.00 35.40 2.67
1385 4864 6.890268 ACATCATATAGCAATGGAGCATCATT 59.110 34.615 0.00 0.00 37.81 2.57
1433 4961 3.818210 TCAGCAGTATCTACTAGCAGAGC 59.182 47.826 0.00 0.00 34.80 4.09
1434 4962 5.063204 ACTCAGCAGTATCTACTAGCAGAG 58.937 45.833 19.85 19.85 42.38 3.35
1435 4963 5.042463 ACTCAGCAGTATCTACTAGCAGA 57.958 43.478 0.00 0.00 34.80 4.26
1436 4964 6.227522 TCTACTCAGCAGTATCTACTAGCAG 58.772 44.000 11.60 0.00 34.44 4.24
1437 4965 6.176014 TCTACTCAGCAGTATCTACTAGCA 57.824 41.667 11.60 0.00 34.44 3.49
1439 4967 7.333423 GTCCATCTACTCAGCAGTATCTACTAG 59.667 44.444 0.00 0.00 34.44 2.57
1440 4968 7.162761 GTCCATCTACTCAGCAGTATCTACTA 58.837 42.308 0.00 0.00 34.44 1.82
1441 4969 6.001460 GTCCATCTACTCAGCAGTATCTACT 58.999 44.000 0.00 0.00 34.44 2.57
1444 4972 4.797743 TGTCCATCTACTCAGCAGTATCT 58.202 43.478 0.00 0.00 34.44 1.98
1445 4973 5.068460 AGTTGTCCATCTACTCAGCAGTATC 59.932 44.000 0.00 0.00 34.44 2.24
1446 4974 4.959210 AGTTGTCCATCTACTCAGCAGTAT 59.041 41.667 0.00 0.00 34.44 2.12
1449 4977 3.883830 AGTTGTCCATCTACTCAGCAG 57.116 47.619 0.00 0.00 0.00 4.24
1450 4978 5.939764 ATTAGTTGTCCATCTACTCAGCA 57.060 39.130 0.00 0.00 34.37 4.41
1452 4980 8.777865 TCAAAATTAGTTGTCCATCTACTCAG 57.222 34.615 0.00 0.00 34.37 3.35
1453 4981 7.824289 CCTCAAAATTAGTTGTCCATCTACTCA 59.176 37.037 0.00 0.00 34.37 3.41
1455 4983 7.824779 GTCCTCAAAATTAGTTGTCCATCTACT 59.175 37.037 0.00 0.00 36.28 2.57
1456 4984 7.824779 AGTCCTCAAAATTAGTTGTCCATCTAC 59.175 37.037 0.00 0.00 0.00 2.59
1457 4985 7.918076 AGTCCTCAAAATTAGTTGTCCATCTA 58.082 34.615 0.00 0.00 0.00 1.98
1458 4986 6.784031 AGTCCTCAAAATTAGTTGTCCATCT 58.216 36.000 0.00 0.00 0.00 2.90
1459 4987 7.824779 ACTAGTCCTCAAAATTAGTTGTCCATC 59.175 37.037 0.00 0.00 0.00 3.51
1460 4988 7.690256 ACTAGTCCTCAAAATTAGTTGTCCAT 58.310 34.615 0.00 0.00 0.00 3.41
1461 4989 7.074653 ACTAGTCCTCAAAATTAGTTGTCCA 57.925 36.000 0.00 0.00 0.00 4.02
1463 4991 9.052759 TCAAACTAGTCCTCAAAATTAGTTGTC 57.947 33.333 0.00 0.00 35.42 3.18
1464 4992 8.974060 TCAAACTAGTCCTCAAAATTAGTTGT 57.026 30.769 0.00 0.00 35.42 3.32
1472 5000 7.944554 AGGAATGAATCAAACTAGTCCTCAAAA 59.055 33.333 0.00 0.00 27.77 2.44
1473 5001 7.461749 AGGAATGAATCAAACTAGTCCTCAAA 58.538 34.615 0.00 0.00 27.77 2.69
1474 5002 7.020827 AGGAATGAATCAAACTAGTCCTCAA 57.979 36.000 0.00 0.00 27.77 3.02
1475 5003 6.627087 AGGAATGAATCAAACTAGTCCTCA 57.373 37.500 0.00 0.00 27.77 3.86
1477 5005 5.187967 ACGAGGAATGAATCAAACTAGTCCT 59.812 40.000 0.00 0.00 36.96 3.85
1478 5006 5.420409 ACGAGGAATGAATCAAACTAGTCC 58.580 41.667 0.00 0.00 0.00 3.85
1479 5007 6.036191 GGAACGAGGAATGAATCAAACTAGTC 59.964 42.308 0.00 0.00 0.00 2.59
1480 5008 5.875359 GGAACGAGGAATGAATCAAACTAGT 59.125 40.000 0.00 0.00 0.00 2.57
1481 5009 6.109359 AGGAACGAGGAATGAATCAAACTAG 58.891 40.000 0.00 0.00 0.00 2.57
1482 5010 6.049955 AGGAACGAGGAATGAATCAAACTA 57.950 37.500 0.00 0.00 0.00 2.24
1483 5011 4.911390 AGGAACGAGGAATGAATCAAACT 58.089 39.130 0.00 0.00 0.00 2.66
1484 5012 4.695455 TGAGGAACGAGGAATGAATCAAAC 59.305 41.667 0.00 0.00 0.00 2.93
1485 5013 4.905429 TGAGGAACGAGGAATGAATCAAA 58.095 39.130 0.00 0.00 0.00 2.69
1486 5014 4.551702 TGAGGAACGAGGAATGAATCAA 57.448 40.909 0.00 0.00 0.00 2.57
1496 5106 9.277783 AGAATAAATTATGAATGAGGAACGAGG 57.722 33.333 0.00 0.00 0.00 4.63
1515 5125 6.294731 GCTGCCAAAAGAAGAGGAAGAATAAA 60.295 38.462 0.00 0.00 28.69 1.40
1516 5126 5.183904 GCTGCCAAAAGAAGAGGAAGAATAA 59.816 40.000 0.00 0.00 28.69 1.40
1517 5127 4.702131 GCTGCCAAAAGAAGAGGAAGAATA 59.298 41.667 0.00 0.00 28.69 1.75
1518 5128 3.509184 GCTGCCAAAAGAAGAGGAAGAAT 59.491 43.478 0.00 0.00 28.69 2.40
1519 5129 2.887152 GCTGCCAAAAGAAGAGGAAGAA 59.113 45.455 0.00 0.00 28.69 2.52
1522 5132 1.956477 GTGCTGCCAAAAGAAGAGGAA 59.044 47.619 0.00 0.00 0.00 3.36
1523 5133 1.609208 GTGCTGCCAAAAGAAGAGGA 58.391 50.000 0.00 0.00 0.00 3.71
1524 5134 0.600057 GGTGCTGCCAAAAGAAGAGG 59.400 55.000 0.00 0.00 37.17 3.69
1525 5135 1.268899 CAGGTGCTGCCAAAAGAAGAG 59.731 52.381 0.00 0.00 40.61 2.85
1527 5137 1.035139 ACAGGTGCTGCCAAAAGAAG 58.965 50.000 0.00 0.00 40.61 2.85
1529 5139 0.746063 CAACAGGTGCTGCCAAAAGA 59.254 50.000 0.00 0.00 40.61 2.52
1585 5331 1.145119 AGTTTCAGAACAGGAACCCCC 59.855 52.381 0.00 0.00 38.26 5.40
1601 5347 3.374058 CCGAGACAATATTTGCCGAGTTT 59.626 43.478 0.00 0.00 0.00 2.66
1628 5374 3.757270 TCCATAGTCGGAGGAAGAGATC 58.243 50.000 0.00 0.00 0.00 2.75
1632 5378 3.499926 GGGTATCCATAGTCGGAGGAAGA 60.500 52.174 0.00 0.00 38.83 2.87
1679 5429 0.107459 GATCAAGACTGTCCCTGGCC 60.107 60.000 3.76 0.00 0.00 5.36
1694 5444 2.238942 AATAGATGCGTTGGCGATCA 57.761 45.000 0.00 0.00 44.10 2.92
1803 5557 1.146152 CACTTGGGGTAAAACTGGGGA 59.854 52.381 0.00 0.00 0.00 4.81
1854 5608 0.036010 CTTCTGTGGCCACGAGGAAT 60.036 55.000 30.07 0.00 36.89 3.01
1940 5694 5.393027 GGTGTTCCTGCATGAATAAATTCGT 60.393 40.000 7.71 0.00 39.62 3.85
1941 5695 5.036737 GGTGTTCCTGCATGAATAAATTCG 58.963 41.667 7.71 0.00 39.62 3.34
2075 5829 9.617523 GACTAGTCTTCTTAGATAGTACTTGGT 57.382 37.037 15.91 0.00 31.10 3.67
2076 5830 9.059260 GGACTAGTCTTCTTAGATAGTACTTGG 57.941 40.741 21.88 0.00 31.10 3.61
2078 5832 8.780003 TGGGACTAGTCTTCTTAGATAGTACTT 58.220 37.037 21.88 0.00 32.11 2.24
2080 5834 8.977267 TTGGGACTAGTCTTCTTAGATAGTAC 57.023 38.462 21.88 0.54 31.10 2.73
2082 5836 9.577222 GTATTGGGACTAGTCTTCTTAGATAGT 57.423 37.037 21.88 0.00 32.37 2.12
2083 5837 9.575868 TGTATTGGGACTAGTCTTCTTAGATAG 57.424 37.037 21.88 0.00 31.86 2.08
2289 6078 8.853077 TTATTGAATCACATATCATCAGTCCC 57.147 34.615 0.00 0.00 0.00 4.46
2599 6400 3.302740 GCAAGTTCGCTATCATGTAGCAC 60.303 47.826 20.12 14.17 40.39 4.40
2643 6444 0.967380 CTGTTTGCAGGATCCCACCC 60.967 60.000 8.55 0.00 39.01 4.61
2649 6450 2.099062 CGCGCTGTTTGCAGGATC 59.901 61.111 5.56 0.00 42.78 3.36
2733 6534 1.541670 GGAGTAAACTCAACGGTGCCA 60.542 52.381 11.98 0.00 44.60 4.92
2863 6664 1.459592 GGAACACACGGAATCAACGAG 59.540 52.381 0.00 0.00 34.93 4.18
2867 6668 1.142060 ACCAGGAACACACGGAATCAA 59.858 47.619 0.00 0.00 0.00 2.57
2928 6733 4.202461 GCATTATGGATGGAGGGAGTACAA 60.202 45.833 0.00 0.00 36.21 2.41
2932 6737 2.374504 CTGCATTATGGATGGAGGGAGT 59.625 50.000 0.00 0.00 46.91 3.85
2933 6738 3.069079 CTGCATTATGGATGGAGGGAG 57.931 52.381 0.00 0.00 46.91 4.30
2938 6743 3.929955 TGACACTGCATTATGGATGGA 57.070 42.857 0.00 0.00 36.21 3.41
2939 6744 4.987408 TTTGACACTGCATTATGGATGG 57.013 40.909 0.00 0.00 36.21 3.51
2965 6770 6.660094 ACTCCCTCCGTCTCATAATATAAGAC 59.340 42.308 0.00 0.00 36.82 3.01
2966 6771 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
2967 6772 7.830201 AGTACTCCCTCCGTCTCATAATATAAG 59.170 40.741 0.00 0.00 0.00 1.73
2968 6773 7.696981 AGTACTCCCTCCGTCTCATAATATAA 58.303 38.462 0.00 0.00 0.00 0.98
2969 6774 7.268212 AGTACTCCCTCCGTCTCATAATATA 57.732 40.000 0.00 0.00 0.00 0.86
2970 6775 6.142259 AGTACTCCCTCCGTCTCATAATAT 57.858 41.667 0.00 0.00 0.00 1.28
2971 6776 5.579753 AGTACTCCCTCCGTCTCATAATA 57.420 43.478 0.00 0.00 0.00 0.98
2972 6777 4.456662 AGTACTCCCTCCGTCTCATAAT 57.543 45.455 0.00 0.00 0.00 1.28
2973 6778 3.947612 AGTACTCCCTCCGTCTCATAA 57.052 47.619 0.00 0.00 0.00 1.90
2974 6779 4.411540 ACTTAGTACTCCCTCCGTCTCATA 59.588 45.833 0.00 0.00 0.00 2.15
2975 6780 3.202595 ACTTAGTACTCCCTCCGTCTCAT 59.797 47.826 0.00 0.00 0.00 2.90
2976 6781 2.575279 ACTTAGTACTCCCTCCGTCTCA 59.425 50.000 0.00 0.00 0.00 3.27
2977 6782 3.280197 ACTTAGTACTCCCTCCGTCTC 57.720 52.381 0.00 0.00 0.00 3.36
2978 6783 4.165758 ACATACTTAGTACTCCCTCCGTCT 59.834 45.833 0.00 0.00 0.00 4.18
2979 6784 4.459330 ACATACTTAGTACTCCCTCCGTC 58.541 47.826 0.00 0.00 0.00 4.79
2980 6785 4.165758 AGACATACTTAGTACTCCCTCCGT 59.834 45.833 0.00 0.00 0.00 4.69
2981 6786 4.716794 AGACATACTTAGTACTCCCTCCG 58.283 47.826 0.00 0.00 0.00 4.63
2982 6787 6.151480 GCATAGACATACTTAGTACTCCCTCC 59.849 46.154 0.00 0.00 0.00 4.30
2983 6788 6.943718 AGCATAGACATACTTAGTACTCCCTC 59.056 42.308 0.00 0.00 0.00 4.30
2984 6789 6.854578 AGCATAGACATACTTAGTACTCCCT 58.145 40.000 0.00 0.00 0.00 4.20
2985 6790 7.527568 AAGCATAGACATACTTAGTACTCCC 57.472 40.000 0.00 0.00 0.00 4.30
2986 6791 9.250624 CAAAAGCATAGACATACTTAGTACTCC 57.749 37.037 0.00 0.00 0.00 3.85
2987 6792 9.250624 CCAAAAGCATAGACATACTTAGTACTC 57.749 37.037 0.00 0.00 0.00 2.59
2988 6793 8.759782 ACCAAAAGCATAGACATACTTAGTACT 58.240 33.333 0.00 0.00 0.00 2.73
2996 6801 5.449177 GCTTCCACCAAAAGCATAGACATAC 60.449 44.000 3.12 0.00 46.63 2.39
3061 6866 6.264744 CCGGATAATTCTTACCTCACTCAGTA 59.735 42.308 0.00 0.00 0.00 2.74
3070 6875 4.804261 GCTCATGCCGGATAATTCTTACCT 60.804 45.833 5.05 0.00 0.00 3.08
3072 6877 4.319177 AGCTCATGCCGGATAATTCTTAC 58.681 43.478 5.05 0.00 40.80 2.34
3075 6880 4.223700 TCATAGCTCATGCCGGATAATTCT 59.776 41.667 5.05 0.00 40.80 2.40
3095 6908 5.241949 CGTCCTACTTCATAGCCTACTTCAT 59.758 44.000 0.00 0.00 0.00 2.57
3105 6918 5.562506 TGTCTGTTCGTCCTACTTCATAG 57.437 43.478 0.00 0.00 0.00 2.23
3106 6919 5.970317 TTGTCTGTTCGTCCTACTTCATA 57.030 39.130 0.00 0.00 0.00 2.15
3107 6920 4.866508 TTGTCTGTTCGTCCTACTTCAT 57.133 40.909 0.00 0.00 0.00 2.57
3108 6921 4.659111 TTTGTCTGTTCGTCCTACTTCA 57.341 40.909 0.00 0.00 0.00 3.02
3109 6922 5.048507 ACTTTTGTCTGTTCGTCCTACTTC 58.951 41.667 0.00 0.00 0.00 3.01
3110 6923 4.809426 CACTTTTGTCTGTTCGTCCTACTT 59.191 41.667 0.00 0.00 0.00 2.24
3113 6926 4.116961 CACACTTTTGTCTGTTCGTCCTA 58.883 43.478 0.00 0.00 31.66 2.94
3114 6927 2.936498 CACACTTTTGTCTGTTCGTCCT 59.064 45.455 0.00 0.00 31.66 3.85
3115 6928 2.676342 ACACACTTTTGTCTGTTCGTCC 59.324 45.455 0.00 0.00 31.66 4.79
3116 6929 3.124636 ACACACACTTTTGTCTGTTCGTC 59.875 43.478 0.00 0.00 31.35 4.20
3117 6930 3.071479 ACACACACTTTTGTCTGTTCGT 58.929 40.909 0.00 0.00 31.35 3.85
3118 6931 3.416277 CACACACACTTTTGTCTGTTCG 58.584 45.455 0.00 0.00 32.99 3.95
3119 6932 3.171277 GCACACACACTTTTGTCTGTTC 58.829 45.455 0.00 0.00 32.99 3.18
3120 6933 2.556189 TGCACACACACTTTTGTCTGTT 59.444 40.909 0.00 0.00 32.99 3.16
3121 6934 2.158559 TGCACACACACTTTTGTCTGT 58.841 42.857 0.00 0.00 35.42 3.41
3122 6935 2.917701 TGCACACACACTTTTGTCTG 57.082 45.000 0.00 0.00 31.66 3.51
3123 6936 3.016031 TGATGCACACACACTTTTGTCT 58.984 40.909 0.00 0.00 31.66 3.41
3124 6937 3.419264 TGATGCACACACACTTTTGTC 57.581 42.857 0.00 0.00 31.66 3.18
3168 6981 5.705609 ACATACACCACATTTTCAAGACC 57.294 39.130 0.00 0.00 0.00 3.85
3185 6998 5.667156 GCGTTGAAAGAACGGAACTACATAC 60.667 44.000 8.84 0.00 43.25 2.39
3189 7002 2.540931 TGCGTTGAAAGAACGGAACTAC 59.459 45.455 8.84 0.00 40.83 2.73
3208 7026 1.521450 ATTGTGTGCCAGAGCTGTGC 61.521 55.000 5.08 1.81 40.80 4.57
3209 7027 0.240145 CATTGTGTGCCAGAGCTGTG 59.760 55.000 3.32 3.32 40.80 3.66
3238 7056 7.559335 TTCTGGTGTTATCTATCCTGCATAT 57.441 36.000 0.00 0.00 0.00 1.78
3239 7057 6.994421 TTCTGGTGTTATCTATCCTGCATA 57.006 37.500 0.00 0.00 0.00 3.14
3240 7058 5.894298 TTCTGGTGTTATCTATCCTGCAT 57.106 39.130 0.00 0.00 0.00 3.96
3243 7144 5.468072 GCACATTCTGGTGTTATCTATCCTG 59.532 44.000 0.00 0.00 40.89 3.86
3248 7149 8.432013 AGAATATGCACATTCTGGTGTTATCTA 58.568 33.333 19.21 0.00 42.38 1.98
3285 7186 7.806487 GCACACACATGTACATATATACGTACT 59.194 37.037 17.37 3.80 39.00 2.73
3286 7187 7.592164 TGCACACACATGTACATATATACGTAC 59.408 37.037 8.32 11.32 36.72 3.67
3287 7188 7.649973 TGCACACACATGTACATATATACGTA 58.350 34.615 8.32 0.00 36.72 3.57
3288 7189 6.508777 TGCACACACATGTACATATATACGT 58.491 36.000 8.32 0.00 36.72 3.57
3289 7190 7.401484 TTGCACACACATGTACATATATACG 57.599 36.000 8.32 0.00 36.72 3.06
3290 7191 8.826710 AGTTTGCACACACATGTACATATATAC 58.173 33.333 8.32 0.00 36.72 1.47
3291 7192 8.825745 CAGTTTGCACACACATGTACATATATA 58.174 33.333 8.32 0.00 36.72 0.86
3292 7193 7.552330 TCAGTTTGCACACACATGTACATATAT 59.448 33.333 8.32 0.00 36.72 0.86
3293 7194 6.876257 TCAGTTTGCACACACATGTACATATA 59.124 34.615 8.32 0.00 36.72 0.86
3294 7195 5.704978 TCAGTTTGCACACACATGTACATAT 59.295 36.000 8.32 0.00 36.72 1.78
3295 7196 5.059833 TCAGTTTGCACACACATGTACATA 58.940 37.500 8.32 0.00 36.72 2.29
3296 7197 3.882288 TCAGTTTGCACACACATGTACAT 59.118 39.130 1.41 1.41 36.72 2.29
3297 7198 3.274288 TCAGTTTGCACACACATGTACA 58.726 40.909 5.67 0.00 36.72 2.90
3298 7199 3.961477 TCAGTTTGCACACACATGTAC 57.039 42.857 5.67 0.00 36.72 2.90
3301 7202 3.425577 AGTTCAGTTTGCACACACATG 57.574 42.857 5.67 0.00 0.00 3.21
3310 7211 4.458708 GAATCGAGACAAGTTCAGTTTGC 58.541 43.478 0.00 0.00 0.00 3.68
3316 7217 4.336889 AAGTGGAATCGAGACAAGTTCA 57.663 40.909 0.00 0.00 0.00 3.18
3317 7218 4.750098 TCAAAGTGGAATCGAGACAAGTTC 59.250 41.667 0.00 0.00 0.00 3.01
3325 7226 0.366871 CGCGTCAAAGTGGAATCGAG 59.633 55.000 0.00 0.00 0.00 4.04
3328 7229 1.429463 ACTCGCGTCAAAGTGGAATC 58.571 50.000 5.77 0.00 0.00 2.52
3339 7240 0.725117 CCCAAACCATTACTCGCGTC 59.275 55.000 5.77 0.00 0.00 5.19
3340 7241 0.322322 TCCCAAACCATTACTCGCGT 59.678 50.000 5.77 0.00 0.00 6.01
3341 7242 1.663695 ATCCCAAACCATTACTCGCG 58.336 50.000 0.00 0.00 0.00 5.87
3342 7243 4.173256 CAAAATCCCAAACCATTACTCGC 58.827 43.478 0.00 0.00 0.00 5.03
3343 7244 4.461081 TCCAAAATCCCAAACCATTACTCG 59.539 41.667 0.00 0.00 0.00 4.18
3344 7245 5.993748 TCCAAAATCCCAAACCATTACTC 57.006 39.130 0.00 0.00 0.00 2.59
3346 7247 6.706295 TCATTCCAAAATCCCAAACCATTAC 58.294 36.000 0.00 0.00 0.00 1.89
3347 7248 6.942163 TCATTCCAAAATCCCAAACCATTA 57.058 33.333 0.00 0.00 0.00 1.90
3348 7249 5.839517 TCATTCCAAAATCCCAAACCATT 57.160 34.783 0.00 0.00 0.00 3.16
3351 7252 5.419239 TGATCATTCCAAAATCCCAAACC 57.581 39.130 0.00 0.00 0.00 3.27
3352 7253 6.642430 TGATGATCATTCCAAAATCCCAAAC 58.358 36.000 10.14 0.00 0.00 2.93
3354 7255 6.612049 TGATGATGATCATTCCAAAATCCCAA 59.388 34.615 10.14 0.00 37.20 4.12
3356 7257 6.659745 TGATGATGATCATTCCAAAATCCC 57.340 37.500 10.14 0.00 37.20 3.85
3390 7291 2.109126 GCCTGTCACCTCCGCATTC 61.109 63.158 0.00 0.00 0.00 2.67
3395 7296 1.903877 ATTCAGGCCTGTCACCTCCG 61.904 60.000 31.58 3.36 34.42 4.63
3403 7304 5.604231 TCTGTTATCTATCATTCAGGCCTGT 59.396 40.000 31.58 15.21 0.00 4.00
3419 7320 9.657121 GTTATTGCAAAGCTCTTATCTGTTATC 57.343 33.333 1.71 0.00 0.00 1.75
3420 7321 9.177608 TGTTATTGCAAAGCTCTTATCTGTTAT 57.822 29.630 1.71 0.00 0.00 1.89
3421 7322 8.560355 TGTTATTGCAAAGCTCTTATCTGTTA 57.440 30.769 1.71 0.00 0.00 2.41
3422 7323 7.452880 TGTTATTGCAAAGCTCTTATCTGTT 57.547 32.000 1.71 0.00 0.00 3.16
3424 7325 8.922058 AAATGTTATTGCAAAGCTCTTATCTG 57.078 30.769 1.71 0.00 0.00 2.90
3425 7326 8.193438 GGAAATGTTATTGCAAAGCTCTTATCT 58.807 33.333 1.71 0.00 0.00 1.98
3429 7330 5.048083 TCGGAAATGTTATTGCAAAGCTCTT 60.048 36.000 1.71 0.00 0.00 2.85
3495 7409 3.564225 GTGCTAGCTTAGTTGTTGTTGGT 59.436 43.478 17.23 0.00 0.00 3.67
3515 7513 5.005971 CCTGCTGTTCAAATCAAAGTTTGTG 59.994 40.000 15.08 6.90 39.50 3.33
3527 7530 0.106769 TCAGGTGCCTGCTGTTCAAA 60.107 50.000 13.12 0.00 43.31 2.69
3534 7537 2.285773 TGTCGATCAGGTGCCTGCT 61.286 57.895 13.12 3.71 43.31 4.24
3573 7621 7.867921 TGTGGGTTCATTGTCCTAATACTAAT 58.132 34.615 0.00 0.00 0.00 1.73
3575 7623 6.126883 CCTGTGGGTTCATTGTCCTAATACTA 60.127 42.308 0.00 0.00 0.00 1.82
3576 7624 5.339200 CCTGTGGGTTCATTGTCCTAATACT 60.339 44.000 0.00 0.00 0.00 2.12
3577 7625 4.881850 CCTGTGGGTTCATTGTCCTAATAC 59.118 45.833 0.00 0.00 0.00 1.89
3582 7630 0.405585 CCCTGTGGGTTCATTGTCCT 59.594 55.000 0.00 0.00 38.25 3.85
3597 8916 3.997021 CTGTACTAGTGTTGAAAGCCCTG 59.003 47.826 5.39 0.00 0.00 4.45
3606 8944 1.676014 GCTGCCCCTGTACTAGTGTTG 60.676 57.143 5.39 0.00 0.00 3.33
3625 8963 0.453390 GTTTCCATGGTAGCTGCTGC 59.547 55.000 13.43 11.33 40.05 5.25
3626 8964 1.098050 GGTTTCCATGGTAGCTGCTG 58.902 55.000 13.43 0.00 0.00 4.41
3627 8965 0.995024 AGGTTTCCATGGTAGCTGCT 59.005 50.000 12.58 7.57 0.00 4.24
3628 8966 1.340017 TGAGGTTTCCATGGTAGCTGC 60.340 52.381 20.66 14.16 0.00 5.25
3636 8984 3.054875 TGATGAGGTCTGAGGTTTCCATG 60.055 47.826 0.00 0.00 0.00 3.66
3639 8987 3.339141 GTTGATGAGGTCTGAGGTTTCC 58.661 50.000 0.00 0.00 0.00 3.13
3661 9009 8.508883 TCAGATAGAAGAAACACTAGTAGGAC 57.491 38.462 1.45 0.00 0.00 3.85
3708 9056 3.437049 GGTTAGTTTTAGACCTGCAGCTG 59.563 47.826 10.11 10.11 0.00 4.24
3773 9123 5.734720 CTGGTGTTGAGAAGGATTAGCTTA 58.265 41.667 0.00 0.00 0.00 3.09
3788 9138 1.347707 TCTTAGTGGGAGCTGGTGTTG 59.652 52.381 0.00 0.00 0.00 3.33
3801 9151 3.120991 GCAGTGTTTACGTGCTCTTAGTG 60.121 47.826 0.00 0.00 34.23 2.74
3805 9155 1.948104 TGCAGTGTTTACGTGCTCTT 58.052 45.000 0.00 0.00 38.09 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.