Multiple sequence alignment - TraesCS2A01G111200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G111200 chr2A 100.000 3134 0 0 1 3134 62390886 62387753 0.000000e+00 5788.0
1 TraesCS2A01G111200 chr2A 89.007 282 23 6 2583 2860 15610791 15611068 2.990000e-90 342.0
2 TraesCS2A01G111200 chr2A 88.976 254 20 5 2588 2835 194713137 194713388 1.090000e-79 307.0
3 TraesCS2A01G111200 chr2A 90.196 153 15 0 548 700 62391515 62391667 1.910000e-47 200.0
4 TraesCS2A01G111200 chr2D 95.306 2450 77 13 710 3134 62065093 62062657 0.000000e+00 3853.0
5 TraesCS2A01G111200 chr2D 87.266 267 29 5 2588 2850 69266836 69267101 1.830000e-77 300.0
6 TraesCS2A01G111200 chr2D 82.716 81 14 0 75 155 45874896 45874976 4.340000e-09 73.1
7 TraesCS2A01G111200 chr2B 95.268 2198 75 17 952 3134 97437532 97435349 0.000000e+00 3456.0
8 TraesCS2A01G111200 chr2B 87.676 284 28 7 2583 2860 24241786 24242068 1.080000e-84 324.0
9 TraesCS2A01G111200 chr2B 88.755 249 26 2 2588 2835 45729540 45729787 1.410000e-78 303.0
10 TraesCS2A01G111200 chr2B 80.533 375 47 9 348 698 754935476 754935848 6.660000e-67 265.0
11 TraesCS2A01G111200 chr2B 91.954 174 11 3 739 912 97437711 97437541 1.120000e-59 241.0
12 TraesCS2A01G111200 chr7A 87.778 270 30 3 2581 2847 150586751 150587020 2.350000e-81 313.0
13 TraesCS2A01G111200 chr5B 88.672 256 25 3 2594 2846 527760615 527760361 3.040000e-80 309.0
14 TraesCS2A01G111200 chr3B 80.208 384 42 12 348 699 739226105 739225724 1.120000e-64 257.0
15 TraesCS2A01G111200 chr3B 82.500 160 20 3 4 155 793016671 793016512 1.960000e-27 134.0
16 TraesCS2A01G111200 chr3D 94.079 152 9 0 548 699 445641433 445641282 6.760000e-57 231.0
17 TraesCS2A01G111200 chr7B 84.656 189 26 3 345 532 694193149 694193335 5.340000e-43 185.0
18 TraesCS2A01G111200 chr7B 93.590 78 4 1 622 699 694193766 694193842 7.100000e-22 115.0
19 TraesCS2A01G111200 chr6D 89.189 148 16 0 548 695 461822822 461822969 5.340000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G111200 chr2A 62387753 62390886 3133 True 5788.0 5788 100.000 1 3134 1 chr2A.!!$R1 3133
1 TraesCS2A01G111200 chr2D 62062657 62065093 2436 True 3853.0 3853 95.306 710 3134 1 chr2D.!!$R1 2424
2 TraesCS2A01G111200 chr2B 97435349 97437711 2362 True 1848.5 3456 93.611 739 3134 2 chr2B.!!$R1 2395

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.034896 AGAAGTACAACCAGCACCGG 59.965 55.0 0.0 0.0 0.00 5.28 F
527 528 0.038251 TGCTCGCTCGTCAAGAACAT 60.038 50.0 0.0 0.0 0.00 2.71 F
588 589 0.187361 TCCCAAAACCACTCAAGGGG 59.813 55.0 0.0 0.0 36.92 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 1857 0.249120 CCGTGTTCCAGGCATCAGTA 59.751 55.000 0.0 0.0 0.0 2.74 R
1840 1864 1.966451 CTTCCACCGTGTTCCAGGC 60.966 63.158 0.0 0.0 0.0 4.85 R
2550 2574 1.068125 TGACCATTACCGACTCACACG 60.068 52.381 0.0 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.483869 GCCCTCATCGCCTCCCTT 61.484 66.667 0.00 0.00 0.00 3.95
21 22 2.825264 CCCTCATCGCCTCCCTTC 59.175 66.667 0.00 0.00 0.00 3.46
22 23 2.812619 CCCTCATCGCCTCCCTTCC 61.813 68.421 0.00 0.00 0.00 3.46
23 24 2.419198 CTCATCGCCTCCCTTCCG 59.581 66.667 0.00 0.00 0.00 4.30
24 25 3.798954 CTCATCGCCTCCCTTCCGC 62.799 68.421 0.00 0.00 0.00 5.54
25 26 4.918201 CATCGCCTCCCTTCCGCC 62.918 72.222 0.00 0.00 0.00 6.13
46 47 4.759096 GTGCATGGCGGACGCAAC 62.759 66.667 18.95 2.48 44.11 4.17
48 49 4.166011 GCATGGCGGACGCAACTC 62.166 66.667 18.95 1.36 44.11 3.01
49 50 2.741985 CATGGCGGACGCAACTCA 60.742 61.111 18.95 7.40 44.11 3.41
50 51 2.108514 CATGGCGGACGCAACTCAT 61.109 57.895 18.95 9.42 44.11 2.90
51 52 0.809636 CATGGCGGACGCAACTCATA 60.810 55.000 18.95 0.00 44.11 2.15
52 53 0.106708 ATGGCGGACGCAACTCATAT 59.893 50.000 18.95 0.00 44.11 1.78
53 54 0.529773 TGGCGGACGCAACTCATATC 60.530 55.000 18.95 0.00 44.11 1.63
54 55 0.529773 GGCGGACGCAACTCATATCA 60.530 55.000 18.95 0.00 44.11 2.15
55 56 0.577269 GCGGACGCAACTCATATCAC 59.423 55.000 12.31 0.00 41.49 3.06
56 57 1.921243 CGGACGCAACTCATATCACA 58.079 50.000 0.00 0.00 0.00 3.58
57 58 1.588404 CGGACGCAACTCATATCACAC 59.412 52.381 0.00 0.00 0.00 3.82
58 59 1.588404 GGACGCAACTCATATCACACG 59.412 52.381 0.00 0.00 0.00 4.49
59 60 2.526077 GACGCAACTCATATCACACGA 58.474 47.619 0.00 0.00 0.00 4.35
60 61 2.259618 ACGCAACTCATATCACACGAC 58.740 47.619 0.00 0.00 0.00 4.34
61 62 2.258755 CGCAACTCATATCACACGACA 58.741 47.619 0.00 0.00 0.00 4.35
62 63 2.860136 CGCAACTCATATCACACGACAT 59.140 45.455 0.00 0.00 0.00 3.06
63 64 3.302028 CGCAACTCATATCACACGACATG 60.302 47.826 0.00 0.00 0.00 3.21
64 65 3.865164 GCAACTCATATCACACGACATGA 59.135 43.478 0.00 0.00 32.60 3.07
65 66 4.329801 GCAACTCATATCACACGACATGAA 59.670 41.667 0.00 0.00 34.70 2.57
66 67 5.501413 GCAACTCATATCACACGACATGAAG 60.501 44.000 0.00 0.00 34.70 3.02
67 68 5.582689 ACTCATATCACACGACATGAAGA 57.417 39.130 0.00 0.00 34.70 2.87
68 69 5.586339 ACTCATATCACACGACATGAAGAG 58.414 41.667 0.00 2.47 34.70 2.85
69 70 4.363138 TCATATCACACGACATGAAGAGC 58.637 43.478 0.00 0.00 32.09 4.09
70 71 2.749280 ATCACACGACATGAAGAGCA 57.251 45.000 0.00 0.00 0.00 4.26
71 72 2.524569 TCACACGACATGAAGAGCAA 57.475 45.000 0.00 0.00 0.00 3.91
72 73 2.135139 TCACACGACATGAAGAGCAAC 58.865 47.619 0.00 0.00 0.00 4.17
73 74 1.866601 CACACGACATGAAGAGCAACA 59.133 47.619 0.00 0.00 0.00 3.33
74 75 1.867233 ACACGACATGAAGAGCAACAC 59.133 47.619 0.00 0.00 0.00 3.32
75 76 1.866601 CACGACATGAAGAGCAACACA 59.133 47.619 0.00 0.00 0.00 3.72
76 77 2.481568 CACGACATGAAGAGCAACACAT 59.518 45.455 0.00 0.00 0.00 3.21
77 78 3.679502 CACGACATGAAGAGCAACACATA 59.320 43.478 0.00 0.00 0.00 2.29
78 79 3.679980 ACGACATGAAGAGCAACACATAC 59.320 43.478 0.00 0.00 0.00 2.39
79 80 3.062639 CGACATGAAGAGCAACACATACC 59.937 47.826 0.00 0.00 0.00 2.73
80 81 3.002791 ACATGAAGAGCAACACATACCG 58.997 45.455 0.00 0.00 0.00 4.02
81 82 1.438651 TGAAGAGCAACACATACCGC 58.561 50.000 0.00 0.00 0.00 5.68
82 83 0.727398 GAAGAGCAACACATACCGCC 59.273 55.000 0.00 0.00 0.00 6.13
83 84 0.036164 AAGAGCAACACATACCGCCA 59.964 50.000 0.00 0.00 0.00 5.69
84 85 0.036164 AGAGCAACACATACCGCCAA 59.964 50.000 0.00 0.00 0.00 4.52
85 86 0.447801 GAGCAACACATACCGCCAAG 59.552 55.000 0.00 0.00 0.00 3.61
86 87 0.036164 AGCAACACATACCGCCAAGA 59.964 50.000 0.00 0.00 0.00 3.02
87 88 0.447801 GCAACACATACCGCCAAGAG 59.552 55.000 0.00 0.00 0.00 2.85
88 89 1.943968 GCAACACATACCGCCAAGAGA 60.944 52.381 0.00 0.00 0.00 3.10
89 90 2.422597 CAACACATACCGCCAAGAGAA 58.577 47.619 0.00 0.00 0.00 2.87
90 91 2.094762 ACACATACCGCCAAGAGAAC 57.905 50.000 0.00 0.00 0.00 3.01
91 92 0.999406 CACATACCGCCAAGAGAACG 59.001 55.000 0.00 0.00 0.00 3.95
92 93 0.739813 ACATACCGCCAAGAGAACGC 60.740 55.000 0.00 0.00 0.00 4.84
93 94 1.153429 ATACCGCCAAGAGAACGCC 60.153 57.895 0.00 0.00 0.00 5.68
94 95 1.614241 ATACCGCCAAGAGAACGCCT 61.614 55.000 0.00 0.00 0.00 5.52
95 96 1.823169 TACCGCCAAGAGAACGCCTT 61.823 55.000 0.00 0.00 0.00 4.35
96 97 2.391389 CCGCCAAGAGAACGCCTTC 61.391 63.158 0.00 0.00 0.00 3.46
97 98 1.374758 CGCCAAGAGAACGCCTTCT 60.375 57.895 0.00 0.00 39.64 2.85
103 104 3.071580 GAGAACGCCTTCTCCATGG 57.928 57.895 4.97 4.97 44.82 3.66
104 105 0.537188 GAGAACGCCTTCTCCATGGA 59.463 55.000 15.27 15.27 44.82 3.41
105 106 0.539051 AGAACGCCTTCTCCATGGAG 59.461 55.000 32.60 32.60 43.21 3.86
106 107 1.078143 AACGCCTTCTCCATGGAGC 60.078 57.895 33.39 22.75 41.71 4.70
107 108 1.557269 AACGCCTTCTCCATGGAGCT 61.557 55.000 33.39 12.13 41.71 4.09
108 109 1.227497 CGCCTTCTCCATGGAGCTC 60.227 63.158 33.39 20.35 41.71 4.09
109 110 1.684386 CGCCTTCTCCATGGAGCTCT 61.684 60.000 33.39 0.00 41.71 4.09
110 111 0.179051 GCCTTCTCCATGGAGCTCTG 60.179 60.000 33.39 21.95 41.71 3.35
111 112 0.179051 CCTTCTCCATGGAGCTCTGC 60.179 60.000 33.39 0.00 41.71 4.26
112 113 0.179051 CTTCTCCATGGAGCTCTGCC 60.179 60.000 33.39 0.00 41.71 4.85
113 114 1.630126 TTCTCCATGGAGCTCTGCCC 61.630 60.000 33.39 0.00 41.71 5.36
114 115 3.457625 CTCCATGGAGCTCTGCCCG 62.458 68.421 28.45 2.97 35.31 6.13
115 116 4.559063 CCATGGAGCTCTGCCCGG 62.559 72.222 14.64 0.00 0.00 5.73
116 117 3.790437 CATGGAGCTCTGCCCGGT 61.790 66.667 14.64 0.00 0.00 5.28
117 118 3.474570 ATGGAGCTCTGCCCGGTC 61.475 66.667 14.64 0.00 0.00 4.79
118 119 3.991924 ATGGAGCTCTGCCCGGTCT 62.992 63.158 14.64 0.00 0.00 3.85
119 120 4.154347 GGAGCTCTGCCCGGTCTG 62.154 72.222 14.64 0.00 0.00 3.51
120 121 4.828925 GAGCTCTGCCCGGTCTGC 62.829 72.222 6.43 0.00 0.00 4.26
123 124 4.767255 CTCTGCCCGGTCTGCCAC 62.767 72.222 0.00 0.00 34.09 5.01
142 143 3.618652 GGGACCTCGTCTTCCTCC 58.381 66.667 0.00 0.00 32.47 4.30
143 144 2.059190 GGGACCTCGTCTTCCTCCC 61.059 68.421 0.00 0.00 33.97 4.30
144 145 2.416432 GGACCTCGTCTTCCTCCCG 61.416 68.421 0.00 0.00 32.47 5.14
145 146 1.378250 GACCTCGTCTTCCTCCCGA 60.378 63.158 0.00 0.00 0.00 5.14
146 147 1.378124 GACCTCGTCTTCCTCCCGAG 61.378 65.000 0.00 0.00 45.71 4.63
157 158 4.689549 TCCCGAGGGAGGCGTGAA 62.690 66.667 6.80 0.00 39.76 3.18
158 159 4.148825 CCCGAGGGAGGCGTGAAG 62.149 72.222 0.84 0.00 37.50 3.02
159 160 4.148825 CCGAGGGAGGCGTGAAGG 62.149 72.222 0.00 0.00 0.00 3.46
160 161 3.382832 CGAGGGAGGCGTGAAGGT 61.383 66.667 0.00 0.00 0.00 3.50
161 162 2.579738 GAGGGAGGCGTGAAGGTC 59.420 66.667 0.00 0.00 0.00 3.85
162 163 2.203788 AGGGAGGCGTGAAGGTCA 60.204 61.111 0.00 0.00 0.00 4.02
163 164 2.047179 GGGAGGCGTGAAGGTCAC 60.047 66.667 0.00 0.00 43.65 3.67
164 165 2.584391 GGGAGGCGTGAAGGTCACT 61.584 63.158 6.80 0.00 44.85 3.41
165 166 1.374758 GGAGGCGTGAAGGTCACTG 60.375 63.158 6.80 2.26 44.85 3.66
166 167 1.666011 GAGGCGTGAAGGTCACTGA 59.334 57.895 6.80 0.00 44.85 3.41
167 168 0.667792 GAGGCGTGAAGGTCACTGAC 60.668 60.000 6.80 0.00 44.85 3.51
168 169 2.022129 GGCGTGAAGGTCACTGACG 61.022 63.158 6.80 0.00 44.85 4.35
169 170 2.658707 GCGTGAAGGTCACTGACGC 61.659 63.158 0.00 0.00 44.85 5.19
170 171 1.007271 CGTGAAGGTCACTGACGCT 60.007 57.895 6.80 0.00 44.85 5.07
171 172 1.278172 CGTGAAGGTCACTGACGCTG 61.278 60.000 6.80 0.00 44.85 5.18
172 173 0.946221 GTGAAGGTCACTGACGCTGG 60.946 60.000 3.04 0.00 43.73 4.85
173 174 1.112916 TGAAGGTCACTGACGCTGGA 61.113 55.000 3.04 0.00 32.65 3.86
174 175 0.667792 GAAGGTCACTGACGCTGGAC 60.668 60.000 3.04 0.00 32.65 4.02
175 176 2.048127 GGTCACTGACGCTGGACC 60.048 66.667 3.04 0.00 42.60 4.46
176 177 2.574955 GGTCACTGACGCTGGACCT 61.575 63.158 3.04 0.00 44.99 3.85
177 178 1.080434 GTCACTGACGCTGGACCTC 60.080 63.158 0.00 0.00 0.00 3.85
178 179 2.262915 CACTGACGCTGGACCTCC 59.737 66.667 0.00 0.00 0.00 4.30
179 180 2.203640 ACTGACGCTGGACCTCCA 60.204 61.111 0.00 0.00 45.30 3.86
180 181 2.262915 CTGACGCTGGACCTCCAC 59.737 66.667 0.00 0.00 42.01 4.02
181 182 3.633094 CTGACGCTGGACCTCCACG 62.633 68.421 12.10 12.10 42.01 4.94
182 183 3.371063 GACGCTGGACCTCCACGA 61.371 66.667 17.62 0.00 42.01 4.35
183 184 3.628280 GACGCTGGACCTCCACGAC 62.628 68.421 17.62 10.94 42.01 4.34
184 185 4.778415 CGCTGGACCTCCACGACG 62.778 72.222 9.42 0.00 42.01 5.12
185 186 3.681835 GCTGGACCTCCACGACGT 61.682 66.667 0.00 0.00 42.01 4.34
186 187 2.567049 CTGGACCTCCACGACGTC 59.433 66.667 5.18 5.18 42.01 4.34
187 188 2.203379 TGGACCTCCACGACGTCA 60.203 61.111 17.16 0.00 42.01 4.35
188 189 2.257676 GGACCTCCACGACGTCAC 59.742 66.667 17.16 0.00 35.64 3.67
189 190 2.257676 GACCTCCACGACGTCACC 59.742 66.667 17.16 0.00 0.00 4.02
190 191 2.520020 ACCTCCACGACGTCACCA 60.520 61.111 17.16 0.00 0.00 4.17
191 192 2.049433 CCTCCACGACGTCACCAC 60.049 66.667 17.16 0.00 0.00 4.16
192 193 2.049433 CTCCACGACGTCACCACC 60.049 66.667 17.16 0.00 0.00 4.61
193 194 3.569049 CTCCACGACGTCACCACCC 62.569 68.421 17.16 0.00 0.00 4.61
194 195 3.918977 CCACGACGTCACCACCCA 61.919 66.667 17.16 0.00 0.00 4.51
195 196 2.660552 CACGACGTCACCACCCAC 60.661 66.667 17.16 0.00 0.00 4.61
196 197 3.920196 ACGACGTCACCACCCACC 61.920 66.667 17.16 0.00 0.00 4.61
221 222 3.786656 CCCATCTCGGCATGAAGAA 57.213 52.632 0.00 0.00 0.00 2.52
222 223 1.590932 CCCATCTCGGCATGAAGAAG 58.409 55.000 0.00 0.00 0.00 2.85
223 224 1.134280 CCCATCTCGGCATGAAGAAGT 60.134 52.381 0.00 0.00 0.00 3.01
224 225 2.103094 CCCATCTCGGCATGAAGAAGTA 59.897 50.000 0.00 0.00 0.00 2.24
225 226 3.126831 CCATCTCGGCATGAAGAAGTAC 58.873 50.000 0.00 0.00 0.00 2.73
226 227 3.430790 CCATCTCGGCATGAAGAAGTACA 60.431 47.826 0.00 0.00 0.00 2.90
227 228 3.953712 TCTCGGCATGAAGAAGTACAA 57.046 42.857 0.00 0.00 0.00 2.41
228 229 3.585862 TCTCGGCATGAAGAAGTACAAC 58.414 45.455 0.00 0.00 0.00 3.32
229 230 2.673368 CTCGGCATGAAGAAGTACAACC 59.327 50.000 0.00 0.00 0.00 3.77
230 231 2.037902 TCGGCATGAAGAAGTACAACCA 59.962 45.455 0.00 0.00 0.00 3.67
231 232 2.416547 CGGCATGAAGAAGTACAACCAG 59.583 50.000 0.00 0.00 0.00 4.00
232 233 2.162408 GGCATGAAGAAGTACAACCAGC 59.838 50.000 0.00 0.00 0.00 4.85
233 234 2.813754 GCATGAAGAAGTACAACCAGCA 59.186 45.455 0.00 0.00 0.00 4.41
234 235 3.365364 GCATGAAGAAGTACAACCAGCAC 60.365 47.826 0.00 0.00 0.00 4.40
235 236 2.846193 TGAAGAAGTACAACCAGCACC 58.154 47.619 0.00 0.00 0.00 5.01
236 237 1.798813 GAAGAAGTACAACCAGCACCG 59.201 52.381 0.00 0.00 0.00 4.94
237 238 0.034896 AGAAGTACAACCAGCACCGG 59.965 55.000 0.00 0.00 0.00 5.28
238 239 0.250166 GAAGTACAACCAGCACCGGT 60.250 55.000 0.00 0.00 42.71 5.28
240 241 0.250166 AGTACAACCAGCACCGGTTC 60.250 55.000 2.97 0.00 46.60 3.62
241 242 1.301087 TACAACCAGCACCGGTTCG 60.301 57.895 2.97 0.00 46.60 3.95
242 243 1.746322 TACAACCAGCACCGGTTCGA 61.746 55.000 2.97 0.00 46.60 3.71
243 244 2.030562 AACCAGCACCGGTTCGAG 59.969 61.111 2.97 0.00 46.60 4.04
244 245 4.681978 ACCAGCACCGGTTCGAGC 62.682 66.667 2.97 5.16 34.91 5.03
245 246 4.379243 CCAGCACCGGTTCGAGCT 62.379 66.667 2.97 8.10 38.19 4.09
246 247 2.811317 CAGCACCGGTTCGAGCTC 60.811 66.667 13.83 2.73 36.34 4.09
247 248 4.421479 AGCACCGGTTCGAGCTCG 62.421 66.667 30.03 30.03 34.25 5.03
259 260 4.821589 AGCTCGCGCTTACCAGCC 62.822 66.667 5.56 0.00 46.47 4.85
261 262 4.492160 CTCGCGCTTACCAGCCGA 62.492 66.667 5.56 7.32 44.06 5.54
262 263 4.789075 TCGCGCTTACCAGCCGAC 62.789 66.667 5.56 0.00 44.06 4.79
264 265 3.188786 GCGCTTACCAGCCGACAG 61.189 66.667 0.00 0.00 44.06 3.51
265 266 3.188786 CGCTTACCAGCCGACAGC 61.189 66.667 0.00 0.00 44.06 4.40
277 278 3.314339 CGACAGCTTACGGAGTCTG 57.686 57.895 0.00 0.00 43.93 3.51
278 279 0.522180 CGACAGCTTACGGAGTCTGT 59.478 55.000 10.07 10.07 43.93 3.41
279 280 1.068472 CGACAGCTTACGGAGTCTGTT 60.068 52.381 10.53 0.00 43.93 3.16
280 281 2.329379 GACAGCTTACGGAGTCTGTTG 58.671 52.381 10.53 4.93 43.93 3.33
281 282 1.687123 ACAGCTTACGGAGTCTGTTGT 59.313 47.619 10.53 5.62 43.93 3.32
282 283 2.061773 CAGCTTACGGAGTCTGTTGTG 58.938 52.381 10.53 2.39 43.93 3.33
283 284 0.790814 GCTTACGGAGTCTGTTGTGC 59.209 55.000 10.53 8.68 43.93 4.57
284 285 1.605712 GCTTACGGAGTCTGTTGTGCT 60.606 52.381 10.53 0.00 43.93 4.40
285 286 2.061773 CTTACGGAGTCTGTTGTGCTG 58.938 52.381 10.53 0.00 43.93 4.41
286 287 0.317160 TACGGAGTCTGTTGTGCTGG 59.683 55.000 10.53 0.00 43.93 4.85
287 288 1.367471 CGGAGTCTGTTGTGCTGGA 59.633 57.895 0.00 0.00 0.00 3.86
288 289 0.946221 CGGAGTCTGTTGTGCTGGAC 60.946 60.000 0.00 0.00 0.00 4.02
289 290 0.946221 GGAGTCTGTTGTGCTGGACG 60.946 60.000 0.00 0.00 34.34 4.79
290 291 0.249489 GAGTCTGTTGTGCTGGACGT 60.249 55.000 0.00 0.00 34.34 4.34
291 292 0.178068 AGTCTGTTGTGCTGGACGTT 59.822 50.000 0.00 0.00 34.34 3.99
292 293 0.304705 GTCTGTTGTGCTGGACGTTG 59.695 55.000 0.00 0.00 0.00 4.10
293 294 1.009675 CTGTTGTGCTGGACGTTGC 60.010 57.895 0.00 0.00 0.00 4.17
294 295 2.331451 GTTGTGCTGGACGTTGCC 59.669 61.111 0.00 0.00 0.00 4.52
295 296 2.904866 TTGTGCTGGACGTTGCCC 60.905 61.111 0.00 0.00 0.00 5.36
296 297 4.947147 TGTGCTGGACGTTGCCCC 62.947 66.667 0.00 0.00 0.00 5.80
300 301 4.760047 CTGGACGTTGCCCCCTCG 62.760 72.222 0.00 0.00 0.00 4.63
334 335 4.605967 CCACAACGGCGTGCACAC 62.606 66.667 15.70 7.05 35.47 3.82
364 365 3.691342 CGTCGGAACTGGGCAGGA 61.691 66.667 0.00 0.00 0.00 3.86
365 366 2.747686 GTCGGAACTGGGCAGGAA 59.252 61.111 0.00 0.00 0.00 3.36
366 367 1.299976 GTCGGAACTGGGCAGGAAT 59.700 57.895 0.00 0.00 0.00 3.01
367 368 1.026718 GTCGGAACTGGGCAGGAATG 61.027 60.000 0.00 0.00 0.00 2.67
368 369 1.198094 TCGGAACTGGGCAGGAATGA 61.198 55.000 0.00 0.00 0.00 2.57
369 370 1.026718 CGGAACTGGGCAGGAATGAC 61.027 60.000 0.00 0.00 0.00 3.06
370 371 1.026718 GGAACTGGGCAGGAATGACG 61.027 60.000 0.00 0.00 0.00 4.35
371 372 1.648467 GAACTGGGCAGGAATGACGC 61.648 60.000 0.00 0.00 0.00 5.19
372 373 2.825836 CTGGGCAGGAATGACGCC 60.826 66.667 0.00 0.00 45.47 5.68
375 376 3.425422 GGCAGGAATGACGCCATC 58.575 61.111 0.00 0.00 45.52 3.51
376 377 2.537560 GGCAGGAATGACGCCATCG 61.538 63.158 0.00 0.00 45.52 3.84
386 387 2.880879 CGCCATCGTCACCGTGAG 60.881 66.667 0.08 0.00 35.01 3.51
410 411 3.409856 CCTCGGGCAACGCATAAG 58.590 61.111 0.00 0.00 43.86 1.73
411 412 2.709475 CTCGGGCAACGCATAAGC 59.291 61.111 0.00 0.00 43.86 3.09
415 416 2.753849 GGCAACGCATAAGCCCCA 60.754 61.111 0.00 0.00 42.58 4.96
416 417 2.774799 GGCAACGCATAAGCCCCAG 61.775 63.158 0.00 0.00 42.58 4.45
417 418 2.800736 CAACGCATAAGCCCCAGC 59.199 61.111 0.00 0.00 37.52 4.85
421 422 3.660621 GCATAAGCCCCAGCGATC 58.339 61.111 0.00 0.00 46.67 3.69
422 423 1.072159 GCATAAGCCCCAGCGATCT 59.928 57.895 0.00 0.00 46.67 2.75
423 424 0.952984 GCATAAGCCCCAGCGATCTC 60.953 60.000 0.00 0.00 46.67 2.75
424 425 0.668706 CATAAGCCCCAGCGATCTCG 60.669 60.000 0.00 0.00 46.67 4.04
434 435 3.023118 CGATCTCGCACTCGGCTA 58.977 61.111 0.00 0.00 41.67 3.93
435 436 1.369448 CGATCTCGCACTCGGCTAC 60.369 63.158 0.00 0.00 41.67 3.58
436 437 1.728069 GATCTCGCACTCGGCTACA 59.272 57.895 0.00 0.00 41.67 2.74
437 438 0.100682 GATCTCGCACTCGGCTACAA 59.899 55.000 0.00 0.00 41.67 2.41
438 439 0.747255 ATCTCGCACTCGGCTACAAT 59.253 50.000 0.00 0.00 41.67 2.71
439 440 0.100682 TCTCGCACTCGGCTACAATC 59.899 55.000 0.00 0.00 41.67 2.67
440 441 0.101399 CTCGCACTCGGCTACAATCT 59.899 55.000 0.00 0.00 41.67 2.40
441 442 0.100682 TCGCACTCGGCTACAATCTC 59.899 55.000 0.00 0.00 41.67 2.75
442 443 0.872021 CGCACTCGGCTACAATCTCC 60.872 60.000 0.00 0.00 41.67 3.71
443 444 0.872021 GCACTCGGCTACAATCTCCG 60.872 60.000 0.00 0.00 44.16 4.63
444 445 0.872021 CACTCGGCTACAATCTCCGC 60.872 60.000 0.00 0.00 42.65 5.54
445 446 1.658717 CTCGGCTACAATCTCCGCG 60.659 63.158 0.00 0.00 42.65 6.46
446 447 2.658593 CGGCTACAATCTCCGCGG 60.659 66.667 22.12 22.12 36.53 6.46
447 448 2.967615 GGCTACAATCTCCGCGGC 60.968 66.667 23.51 4.73 0.00 6.53
448 449 3.330853 GCTACAATCTCCGCGGCG 61.331 66.667 23.51 16.47 0.00 6.46
449 450 3.330853 CTACAATCTCCGCGGCGC 61.331 66.667 23.51 24.21 0.00 6.53
467 468 4.043200 GCCAGCGCCAACAACCTC 62.043 66.667 2.29 0.00 0.00 3.85
468 469 2.594303 CCAGCGCCAACAACCTCA 60.594 61.111 2.29 0.00 0.00 3.86
469 470 2.192861 CCAGCGCCAACAACCTCAA 61.193 57.895 2.29 0.00 0.00 3.02
470 471 1.008538 CAGCGCCAACAACCTCAAC 60.009 57.895 2.29 0.00 0.00 3.18
471 472 2.193536 AGCGCCAACAACCTCAACC 61.194 57.895 2.29 0.00 0.00 3.77
472 473 2.193536 GCGCCAACAACCTCAACCT 61.194 57.895 0.00 0.00 0.00 3.50
473 474 0.887387 GCGCCAACAACCTCAACCTA 60.887 55.000 0.00 0.00 0.00 3.08
474 475 1.156736 CGCCAACAACCTCAACCTAG 58.843 55.000 0.00 0.00 0.00 3.02
475 476 1.270625 CGCCAACAACCTCAACCTAGA 60.271 52.381 0.00 0.00 0.00 2.43
476 477 2.615493 CGCCAACAACCTCAACCTAGAT 60.615 50.000 0.00 0.00 0.00 1.98
477 478 2.749621 GCCAACAACCTCAACCTAGATG 59.250 50.000 0.00 0.00 0.00 2.90
478 479 3.559171 GCCAACAACCTCAACCTAGATGA 60.559 47.826 0.00 0.00 0.00 2.92
479 480 4.651778 CCAACAACCTCAACCTAGATGAA 58.348 43.478 0.00 0.00 0.00 2.57
480 481 5.256474 CCAACAACCTCAACCTAGATGAAT 58.744 41.667 0.00 0.00 0.00 2.57
481 482 5.124457 CCAACAACCTCAACCTAGATGAATG 59.876 44.000 0.00 0.00 0.00 2.67
482 483 4.848357 ACAACCTCAACCTAGATGAATGG 58.152 43.478 0.00 0.00 0.00 3.16
483 484 4.289672 ACAACCTCAACCTAGATGAATGGT 59.710 41.667 0.00 0.00 35.29 3.55
484 485 4.762289 ACCTCAACCTAGATGAATGGTC 57.238 45.455 0.00 0.00 32.98 4.02
485 486 4.104086 ACCTCAACCTAGATGAATGGTCA 58.896 43.478 0.00 0.00 38.41 4.02
486 487 4.163078 ACCTCAACCTAGATGAATGGTCAG 59.837 45.833 0.00 0.00 37.14 3.51
487 488 4.406972 CCTCAACCTAGATGAATGGTCAGA 59.593 45.833 0.00 0.00 37.14 3.27
488 489 5.453057 CCTCAACCTAGATGAATGGTCAGAG 60.453 48.000 0.00 0.00 37.14 3.35
489 490 4.125703 CAACCTAGATGAATGGTCAGAGC 58.874 47.826 0.00 0.00 37.14 4.09
490 491 2.703007 ACCTAGATGAATGGTCAGAGCC 59.297 50.000 0.00 0.00 37.14 4.70
491 492 2.702478 CCTAGATGAATGGTCAGAGCCA 59.298 50.000 0.00 0.00 43.48 4.75
492 493 2.706339 AGATGAATGGTCAGAGCCAC 57.294 50.000 0.00 0.00 41.94 5.01
493 494 2.194859 AGATGAATGGTCAGAGCCACT 58.805 47.619 0.00 0.00 41.94 4.00
494 495 3.378512 AGATGAATGGTCAGAGCCACTA 58.621 45.455 0.00 0.00 41.94 2.74
495 496 3.133721 AGATGAATGGTCAGAGCCACTAC 59.866 47.826 0.00 0.00 41.94 2.73
496 497 2.540383 TGAATGGTCAGAGCCACTACT 58.460 47.619 0.00 0.00 41.94 2.57
497 498 2.906389 TGAATGGTCAGAGCCACTACTT 59.094 45.455 0.00 0.00 41.94 2.24
498 499 3.055819 TGAATGGTCAGAGCCACTACTTC 60.056 47.826 0.00 0.00 41.94 3.01
499 500 1.267121 TGGTCAGAGCCACTACTTCC 58.733 55.000 0.00 0.00 32.81 3.46
500 501 0.537653 GGTCAGAGCCACTACTTCCC 59.462 60.000 0.00 0.00 0.00 3.97
501 502 0.173708 GTCAGAGCCACTACTTCCCG 59.826 60.000 0.00 0.00 0.00 5.14
502 503 0.970937 TCAGAGCCACTACTTCCCGG 60.971 60.000 0.00 0.00 0.00 5.73
503 504 2.187163 GAGCCACTACTTCCCGGC 59.813 66.667 0.00 0.00 45.23 6.13
522 523 3.175240 CGGTGCTCGCTCGTCAAG 61.175 66.667 0.00 0.00 0.00 3.02
523 524 2.258591 GGTGCTCGCTCGTCAAGA 59.741 61.111 0.00 0.00 0.00 3.02
524 525 1.372997 GGTGCTCGCTCGTCAAGAA 60.373 57.895 0.00 0.00 0.00 2.52
525 526 1.618640 GGTGCTCGCTCGTCAAGAAC 61.619 60.000 0.00 0.00 0.00 3.01
526 527 0.939577 GTGCTCGCTCGTCAAGAACA 60.940 55.000 0.00 0.00 0.00 3.18
527 528 0.038251 TGCTCGCTCGTCAAGAACAT 60.038 50.000 0.00 0.00 0.00 2.71
528 529 1.071605 GCTCGCTCGTCAAGAACATT 58.928 50.000 0.00 0.00 0.00 2.71
529 530 1.201855 GCTCGCTCGTCAAGAACATTG 60.202 52.381 0.00 0.00 0.00 2.82
530 531 0.790207 TCGCTCGTCAAGAACATTGC 59.210 50.000 0.00 0.00 0.00 3.56
531 532 0.517132 CGCTCGTCAAGAACATTGCG 60.517 55.000 0.00 0.00 35.38 4.85
532 533 0.512952 GCTCGTCAAGAACATTGCGT 59.487 50.000 0.00 0.00 0.00 5.24
533 534 1.462541 GCTCGTCAAGAACATTGCGTC 60.463 52.381 0.00 0.00 0.00 5.19
534 535 0.781787 TCGTCAAGAACATTGCGTCG 59.218 50.000 0.00 0.00 0.00 5.12
535 536 0.785708 CGTCAAGAACATTGCGTCGC 60.786 55.000 11.10 11.10 0.00 5.19
536 537 0.785708 GTCAAGAACATTGCGTCGCG 60.786 55.000 13.38 0.00 0.00 5.87
537 538 1.509787 CAAGAACATTGCGTCGCGG 60.510 57.895 13.38 7.26 0.00 6.46
538 539 2.677003 AAGAACATTGCGTCGCGGG 61.677 57.895 13.38 6.88 0.00 6.13
539 540 4.160635 GAACATTGCGTCGCGGGG 62.161 66.667 13.38 6.51 0.00 5.73
548 549 3.423154 GTCGCGGGGCAAGTCAAG 61.423 66.667 6.13 0.00 0.00 3.02
549 550 3.936203 TCGCGGGGCAAGTCAAGT 61.936 61.111 6.13 0.00 0.00 3.16
550 551 3.423154 CGCGGGGCAAGTCAAGTC 61.423 66.667 0.00 0.00 0.00 3.01
551 552 2.281484 GCGGGGCAAGTCAAGTCA 60.281 61.111 0.00 0.00 0.00 3.41
552 553 1.896660 GCGGGGCAAGTCAAGTCAA 60.897 57.895 0.00 0.00 0.00 3.18
553 554 1.452145 GCGGGGCAAGTCAAGTCAAA 61.452 55.000 0.00 0.00 0.00 2.69
554 555 1.028905 CGGGGCAAGTCAAGTCAAAA 58.971 50.000 0.00 0.00 0.00 2.44
555 556 1.269051 CGGGGCAAGTCAAGTCAAAAC 60.269 52.381 0.00 0.00 0.00 2.43
556 557 1.068588 GGGGCAAGTCAAGTCAAAACC 59.931 52.381 0.00 0.00 0.00 3.27
557 558 1.269051 GGGCAAGTCAAGTCAAAACCG 60.269 52.381 0.00 0.00 0.00 4.44
558 559 1.269051 GGCAAGTCAAGTCAAAACCGG 60.269 52.381 0.00 0.00 0.00 5.28
559 560 1.404035 GCAAGTCAAGTCAAAACCGGT 59.596 47.619 0.00 0.00 0.00 5.28
560 561 2.159296 GCAAGTCAAGTCAAAACCGGTT 60.159 45.455 15.86 15.86 0.00 4.44
561 562 3.434637 CAAGTCAAGTCAAAACCGGTTG 58.565 45.455 23.08 10.74 0.00 3.77
562 563 1.404035 AGTCAAGTCAAAACCGGTTGC 59.596 47.619 23.08 11.67 0.00 4.17
563 564 1.133407 GTCAAGTCAAAACCGGTTGCA 59.867 47.619 23.08 4.65 0.00 4.08
564 565 1.819288 TCAAGTCAAAACCGGTTGCAA 59.181 42.857 23.08 6.12 0.00 4.08
565 566 2.428890 TCAAGTCAAAACCGGTTGCAAT 59.571 40.909 23.08 0.95 0.00 3.56
566 567 2.793278 AGTCAAAACCGGTTGCAATC 57.207 45.000 23.08 10.78 0.00 2.67
567 568 1.339929 AGTCAAAACCGGTTGCAATCC 59.660 47.619 23.08 7.21 0.00 3.01
568 569 1.339929 GTCAAAACCGGTTGCAATCCT 59.660 47.619 23.08 0.00 0.00 3.24
569 570 2.035632 TCAAAACCGGTTGCAATCCTT 58.964 42.857 23.08 6.46 0.00 3.36
570 571 2.035321 TCAAAACCGGTTGCAATCCTTC 59.965 45.455 23.08 0.00 0.00 3.46
571 572 0.966179 AAACCGGTTGCAATCCTTCC 59.034 50.000 23.08 0.00 0.00 3.46
572 573 0.898326 AACCGGTTGCAATCCTTCCC 60.898 55.000 21.56 0.00 0.00 3.97
573 574 1.304052 CCGGTTGCAATCCTTCCCA 60.304 57.895 0.59 0.00 0.00 4.37
574 575 0.897863 CCGGTTGCAATCCTTCCCAA 60.898 55.000 0.59 0.00 0.00 4.12
575 576 0.965439 CGGTTGCAATCCTTCCCAAA 59.035 50.000 0.59 0.00 0.00 3.28
576 577 1.342819 CGGTTGCAATCCTTCCCAAAA 59.657 47.619 0.59 0.00 0.00 2.44
577 578 2.766313 GGTTGCAATCCTTCCCAAAAC 58.234 47.619 0.59 0.00 0.00 2.43
578 579 2.549992 GGTTGCAATCCTTCCCAAAACC 60.550 50.000 0.59 0.00 0.00 3.27
579 580 2.094100 TGCAATCCTTCCCAAAACCA 57.906 45.000 0.00 0.00 0.00 3.67
580 581 1.691434 TGCAATCCTTCCCAAAACCAC 59.309 47.619 0.00 0.00 0.00 4.16
581 582 1.970640 GCAATCCTTCCCAAAACCACT 59.029 47.619 0.00 0.00 0.00 4.00
582 583 2.029020 GCAATCCTTCCCAAAACCACTC 60.029 50.000 0.00 0.00 0.00 3.51
583 584 3.230134 CAATCCTTCCCAAAACCACTCA 58.770 45.455 0.00 0.00 0.00 3.41
584 585 3.611025 ATCCTTCCCAAAACCACTCAA 57.389 42.857 0.00 0.00 0.00 3.02
585 586 2.944129 TCCTTCCCAAAACCACTCAAG 58.056 47.619 0.00 0.00 0.00 3.02
586 587 1.963515 CCTTCCCAAAACCACTCAAGG 59.036 52.381 0.00 0.00 0.00 3.61
587 588 1.963515 CTTCCCAAAACCACTCAAGGG 59.036 52.381 0.00 0.00 37.65 3.95
588 589 0.187361 TCCCAAAACCACTCAAGGGG 59.813 55.000 0.00 0.00 36.92 4.79
589 590 1.471829 CCCAAAACCACTCAAGGGGC 61.472 60.000 0.00 0.00 32.59 5.80
590 591 0.469892 CCAAAACCACTCAAGGGGCT 60.470 55.000 0.00 0.00 0.00 5.19
591 592 1.413118 CAAAACCACTCAAGGGGCTT 58.587 50.000 0.00 0.00 0.00 4.35
592 593 2.593026 CAAAACCACTCAAGGGGCTTA 58.407 47.619 0.00 0.00 0.00 3.09
593 594 3.165071 CAAAACCACTCAAGGGGCTTAT 58.835 45.455 0.00 0.00 0.00 1.73
594 595 3.542969 AAACCACTCAAGGGGCTTATT 57.457 42.857 0.00 0.00 0.00 1.40
595 596 2.514458 ACCACTCAAGGGGCTTATTG 57.486 50.000 0.00 0.00 0.00 1.90
596 597 1.992557 ACCACTCAAGGGGCTTATTGA 59.007 47.619 0.00 0.00 34.41 2.57
597 598 2.582636 ACCACTCAAGGGGCTTATTGAT 59.417 45.455 0.00 0.00 35.04 2.57
598 599 3.217626 CCACTCAAGGGGCTTATTGATC 58.782 50.000 0.00 0.00 35.04 2.92
599 600 2.874701 CACTCAAGGGGCTTATTGATCG 59.125 50.000 1.24 0.00 35.04 3.69
600 601 2.158755 ACTCAAGGGGCTTATTGATCGG 60.159 50.000 1.24 0.00 35.04 4.18
601 602 1.142870 TCAAGGGGCTTATTGATCGGG 59.857 52.381 0.00 0.00 30.67 5.14
602 603 1.133792 CAAGGGGCTTATTGATCGGGT 60.134 52.381 0.00 0.00 0.00 5.28
603 604 2.105821 CAAGGGGCTTATTGATCGGGTA 59.894 50.000 0.00 0.00 0.00 3.69
604 605 2.632537 AGGGGCTTATTGATCGGGTAT 58.367 47.619 0.00 0.00 0.00 2.73
605 606 2.986728 AGGGGCTTATTGATCGGGTATT 59.013 45.455 0.00 0.00 0.00 1.89
606 607 3.081804 GGGGCTTATTGATCGGGTATTG 58.918 50.000 0.00 0.00 0.00 1.90
607 608 2.488153 GGGCTTATTGATCGGGTATTGC 59.512 50.000 0.00 0.00 0.00 3.56
608 609 3.146066 GGCTTATTGATCGGGTATTGCA 58.854 45.455 0.00 0.00 0.00 4.08
609 610 3.189287 GGCTTATTGATCGGGTATTGCAG 59.811 47.826 0.00 0.00 0.00 4.41
610 611 4.065088 GCTTATTGATCGGGTATTGCAGA 58.935 43.478 0.00 0.00 0.00 4.26
611 612 4.697352 GCTTATTGATCGGGTATTGCAGAT 59.303 41.667 0.00 0.00 0.00 2.90
612 613 5.182001 GCTTATTGATCGGGTATTGCAGATT 59.818 40.000 0.00 0.00 0.00 2.40
613 614 6.294176 GCTTATTGATCGGGTATTGCAGATTT 60.294 38.462 0.00 0.00 0.00 2.17
614 615 7.581213 TTATTGATCGGGTATTGCAGATTTT 57.419 32.000 0.00 0.00 0.00 1.82
615 616 8.684386 TTATTGATCGGGTATTGCAGATTTTA 57.316 30.769 0.00 0.00 0.00 1.52
616 617 6.618287 TTGATCGGGTATTGCAGATTTTAG 57.382 37.500 0.00 0.00 0.00 1.85
617 618 5.063204 TGATCGGGTATTGCAGATTTTAGG 58.937 41.667 0.00 0.00 0.00 2.69
618 619 3.815809 TCGGGTATTGCAGATTTTAGGG 58.184 45.455 0.00 0.00 0.00 3.53
619 620 2.884639 CGGGTATTGCAGATTTTAGGGG 59.115 50.000 0.00 0.00 0.00 4.79
620 621 3.434453 CGGGTATTGCAGATTTTAGGGGA 60.434 47.826 0.00 0.00 0.00 4.81
621 622 4.740902 GGGTATTGCAGATTTTAGGGGAT 58.259 43.478 0.00 0.00 0.00 3.85
622 623 4.524328 GGGTATTGCAGATTTTAGGGGATG 59.476 45.833 0.00 0.00 0.00 3.51
623 624 5.385198 GGTATTGCAGATTTTAGGGGATGA 58.615 41.667 0.00 0.00 0.00 2.92
624 625 6.012745 GGTATTGCAGATTTTAGGGGATGAT 58.987 40.000 0.00 0.00 0.00 2.45
625 626 6.494835 GGTATTGCAGATTTTAGGGGATGATT 59.505 38.462 0.00 0.00 0.00 2.57
626 627 7.015584 GGTATTGCAGATTTTAGGGGATGATTT 59.984 37.037 0.00 0.00 0.00 2.17
627 628 9.077885 GTATTGCAGATTTTAGGGGATGATTTA 57.922 33.333 0.00 0.00 0.00 1.40
628 629 7.969690 TTGCAGATTTTAGGGGATGATTTAA 57.030 32.000 0.00 0.00 0.00 1.52
629 630 7.346751 TGCAGATTTTAGGGGATGATTTAAC 57.653 36.000 0.00 0.00 0.00 2.01
630 631 6.323739 TGCAGATTTTAGGGGATGATTTAACC 59.676 38.462 0.00 0.00 0.00 2.85
631 632 6.515035 GCAGATTTTAGGGGATGATTTAACCG 60.515 42.308 0.00 0.00 0.00 4.44
632 633 6.016276 CAGATTTTAGGGGATGATTTAACCGG 60.016 42.308 0.00 0.00 0.00 5.28
633 634 4.866327 TTTAGGGGATGATTTAACCGGT 57.134 40.909 0.00 0.00 0.00 5.28
634 635 4.866327 TTAGGGGATGATTTAACCGGTT 57.134 40.909 25.64 25.64 0.00 4.44
635 636 3.750501 AGGGGATGATTTAACCGGTTT 57.249 42.857 27.64 7.59 0.00 3.27
636 637 4.055710 AGGGGATGATTTAACCGGTTTT 57.944 40.909 27.64 11.11 0.00 2.43
637 638 5.195848 AGGGGATGATTTAACCGGTTTTA 57.804 39.130 27.64 14.33 0.00 1.52
638 639 5.198207 AGGGGATGATTTAACCGGTTTTAG 58.802 41.667 27.64 0.00 0.00 1.85
639 640 5.044698 AGGGGATGATTTAACCGGTTTTAGA 60.045 40.000 27.64 3.81 0.00 2.10
640 641 5.066893 GGGGATGATTTAACCGGTTTTAGAC 59.933 44.000 27.64 13.74 0.00 2.59
641 642 5.884232 GGGATGATTTAACCGGTTTTAGACT 59.116 40.000 27.64 6.98 0.00 3.24
642 643 6.376299 GGGATGATTTAACCGGTTTTAGACTT 59.624 38.462 27.64 11.42 0.00 3.01
643 644 7.094075 GGGATGATTTAACCGGTTTTAGACTTT 60.094 37.037 27.64 0.00 0.00 2.66
644 645 8.949177 GGATGATTTAACCGGTTTTAGACTTTA 58.051 33.333 27.64 0.00 0.00 1.85
645 646 9.983804 GATGATTTAACCGGTTTTAGACTTTAG 57.016 33.333 27.64 0.00 0.00 1.85
646 647 8.326680 TGATTTAACCGGTTTTAGACTTTAGG 57.673 34.615 27.64 0.00 0.00 2.69
647 648 7.391275 TGATTTAACCGGTTTTAGACTTTAGGG 59.609 37.037 27.64 0.00 0.00 3.53
648 649 3.708403 ACCGGTTTTAGACTTTAGGGG 57.292 47.619 0.00 0.00 0.00 4.79
649 650 2.306805 ACCGGTTTTAGACTTTAGGGGG 59.693 50.000 0.00 0.00 0.00 5.40
650 651 2.573009 CCGGTTTTAGACTTTAGGGGGA 59.427 50.000 0.00 0.00 0.00 4.81
651 652 3.009363 CCGGTTTTAGACTTTAGGGGGAA 59.991 47.826 0.00 0.00 0.00 3.97
652 653 4.324797 CCGGTTTTAGACTTTAGGGGGAAT 60.325 45.833 0.00 0.00 0.00 3.01
653 654 5.258841 CGGTTTTAGACTTTAGGGGGAATT 58.741 41.667 0.00 0.00 0.00 2.17
654 655 5.713389 CGGTTTTAGACTTTAGGGGGAATTT 59.287 40.000 0.00 0.00 0.00 1.82
655 656 6.349860 CGGTTTTAGACTTTAGGGGGAATTTG 60.350 42.308 0.00 0.00 0.00 2.32
656 657 6.722590 GGTTTTAGACTTTAGGGGGAATTTGA 59.277 38.462 0.00 0.00 0.00 2.69
657 658 7.399191 GGTTTTAGACTTTAGGGGGAATTTGAT 59.601 37.037 0.00 0.00 0.00 2.57
658 659 8.467598 GTTTTAGACTTTAGGGGGAATTTGATC 58.532 37.037 0.00 0.00 0.00 2.92
659 660 5.130705 AGACTTTAGGGGGAATTTGATCC 57.869 43.478 0.00 0.00 38.86 3.36
660 661 4.544152 AGACTTTAGGGGGAATTTGATCCA 59.456 41.667 0.00 0.00 41.55 3.41
661 662 5.016245 AGACTTTAGGGGGAATTTGATCCAA 59.984 40.000 0.00 0.00 41.55 3.53
662 663 5.023452 ACTTTAGGGGGAATTTGATCCAAC 58.977 41.667 0.00 0.00 41.55 3.77
663 664 4.965283 TTAGGGGGAATTTGATCCAACT 57.035 40.909 0.00 0.00 41.55 3.16
664 665 6.011096 ACTTTAGGGGGAATTTGATCCAACTA 60.011 38.462 0.00 0.00 41.55 2.24
665 666 4.526438 AGGGGGAATTTGATCCAACTAG 57.474 45.455 0.00 0.00 41.55 2.57
666 667 4.119155 AGGGGGAATTTGATCCAACTAGA 58.881 43.478 0.00 0.00 41.55 2.43
667 668 4.733988 AGGGGGAATTTGATCCAACTAGAT 59.266 41.667 0.00 0.00 41.55 1.98
668 669 4.829492 GGGGGAATTTGATCCAACTAGATG 59.171 45.833 0.00 0.00 41.55 2.90
669 670 4.829492 GGGGAATTTGATCCAACTAGATGG 59.171 45.833 12.74 12.74 41.55 3.51
678 679 4.778213 TCCAACTAGATGGATTTGAGGG 57.222 45.455 17.26 0.00 44.52 4.30
679 680 4.111577 TCCAACTAGATGGATTTGAGGGT 58.888 43.478 17.26 0.00 44.52 4.34
680 681 4.080356 TCCAACTAGATGGATTTGAGGGTG 60.080 45.833 17.26 0.00 44.52 4.61
681 682 4.080356 CCAACTAGATGGATTTGAGGGTGA 60.080 45.833 13.66 0.00 43.54 4.02
682 683 5.500234 CAACTAGATGGATTTGAGGGTGAA 58.500 41.667 0.00 0.00 0.00 3.18
683 684 5.779241 ACTAGATGGATTTGAGGGTGAAA 57.221 39.130 0.00 0.00 0.00 2.69
684 685 6.139679 ACTAGATGGATTTGAGGGTGAAAA 57.860 37.500 0.00 0.00 0.00 2.29
685 686 6.183347 ACTAGATGGATTTGAGGGTGAAAAG 58.817 40.000 0.00 0.00 0.00 2.27
686 687 5.003096 AGATGGATTTGAGGGTGAAAAGT 57.997 39.130 0.00 0.00 0.00 2.66
687 688 6.139679 AGATGGATTTGAGGGTGAAAAGTA 57.860 37.500 0.00 0.00 0.00 2.24
688 689 6.735556 AGATGGATTTGAGGGTGAAAAGTAT 58.264 36.000 0.00 0.00 0.00 2.12
689 690 7.872138 AGATGGATTTGAGGGTGAAAAGTATA 58.128 34.615 0.00 0.00 0.00 1.47
690 691 7.775561 AGATGGATTTGAGGGTGAAAAGTATAC 59.224 37.037 0.00 0.00 0.00 1.47
691 692 7.027874 TGGATTTGAGGGTGAAAAGTATACT 57.972 36.000 0.00 0.00 0.00 2.12
692 693 7.466804 TGGATTTGAGGGTGAAAAGTATACTT 58.533 34.615 12.50 12.50 37.91 2.24
694 695 8.459635 GGATTTGAGGGTGAAAAGTATACTTTC 58.540 37.037 26.87 20.24 44.69 2.62
695 696 9.232473 GATTTGAGGGTGAAAAGTATACTTTCT 57.768 33.333 26.87 19.73 44.69 2.52
696 697 8.990163 TTTGAGGGTGAAAAGTATACTTTCTT 57.010 30.769 26.87 15.23 44.69 2.52
697 698 8.617290 TTGAGGGTGAAAAGTATACTTTCTTC 57.383 34.615 26.87 21.77 44.69 2.87
698 699 7.974504 TGAGGGTGAAAAGTATACTTTCTTCT 58.025 34.615 26.87 19.42 44.69 2.85
699 700 9.096823 TGAGGGTGAAAAGTATACTTTCTTCTA 57.903 33.333 26.87 12.29 44.69 2.10
700 701 9.939802 GAGGGTGAAAAGTATACTTTCTTCTAA 57.060 33.333 26.87 6.10 44.69 2.10
701 702 9.722184 AGGGTGAAAAGTATACTTTCTTCTAAC 57.278 33.333 26.87 16.01 44.69 2.34
702 703 8.944029 GGGTGAAAAGTATACTTTCTTCTAACC 58.056 37.037 26.87 22.19 44.69 2.85
703 704 9.498176 GGTGAAAAGTATACTTTCTTCTAACCA 57.502 33.333 26.87 13.61 44.69 3.67
742 744 5.278061 AGGGCATCTTCTAACCAGTAAGTA 58.722 41.667 0.00 0.00 0.00 2.24
968 992 2.741228 GCTGAGACGCATCATCCTTCTT 60.741 50.000 0.00 0.00 0.00 2.52
975 999 1.202867 GCATCATCCTTCTTCCCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
1065 1089 2.908796 GGAACCCTCATCCCCGTC 59.091 66.667 0.00 0.00 0.00 4.79
1228 1252 4.508128 CCGACCCCCACATCGTCG 62.508 72.222 2.01 2.01 46.79 5.12
1542 1566 2.838693 TGTGTTCCGTCGTCCCCA 60.839 61.111 0.00 0.00 0.00 4.96
1569 1593 3.293702 GAGGCTCTCGACCTTGCT 58.706 61.111 7.40 0.00 37.77 3.91
1575 1599 1.229209 TCTCGACCTTGCTTCCCCT 60.229 57.895 0.00 0.00 0.00 4.79
1576 1600 0.836400 TCTCGACCTTGCTTCCCCTT 60.836 55.000 0.00 0.00 0.00 3.95
1577 1601 0.674895 CTCGACCTTGCTTCCCCTTG 60.675 60.000 0.00 0.00 0.00 3.61
1752 1776 2.297895 CCCGGTCCTTGACATGGGA 61.298 63.158 15.08 0.95 46.16 4.37
1821 1845 2.204291 ATGGGGCAGGTCAAGGGA 60.204 61.111 0.00 0.00 0.00 4.20
1887 1911 2.125350 GAGCTGCCGAGGTTCCTG 60.125 66.667 0.00 0.00 0.00 3.86
1946 1970 1.918957 CCTGATCTGGGAAGGGAAGTT 59.081 52.381 10.73 0.00 0.00 2.66
1965 1989 6.659668 GGAAGTTGAAAGGGAAAGCTAGTAAT 59.340 38.462 0.00 0.00 0.00 1.89
1967 1991 6.779860 AGTTGAAAGGGAAAGCTAGTAATGA 58.220 36.000 0.00 0.00 0.00 2.57
1969 1993 7.724061 AGTTGAAAGGGAAAGCTAGTAATGAAA 59.276 33.333 0.00 0.00 0.00 2.69
2121 2145 2.228343 TGCGATCACACATTGCATTTCA 59.772 40.909 0.00 0.00 33.79 2.69
2165 2189 2.614987 GCAGATGTGAAGCAAGGAGAGT 60.615 50.000 0.00 0.00 0.00 3.24
2282 2306 6.920569 ACAGTTTGAACAACTACCAACTAG 57.079 37.500 0.00 0.00 0.00 2.57
2299 2323 7.264947 ACCAACTAGCATTGTTTATATTTGGC 58.735 34.615 0.00 0.00 33.52 4.52
2565 2589 3.314553 CTGTTTCGTGTGAGTCGGTAAT 58.685 45.455 0.00 0.00 0.00 1.89
2761 2801 6.489603 TGACCTGGTATTGTGGATGTTAATT 58.510 36.000 0.00 0.00 0.00 1.40
2821 2861 6.061022 TGACCCAAGACAAAGCTAATATGA 57.939 37.500 0.00 0.00 0.00 2.15
2822 2862 6.480763 TGACCCAAGACAAAGCTAATATGAA 58.519 36.000 0.00 0.00 0.00 2.57
3021 3061 5.413309 TGGTTTTGTCAGTTTTGTGGAAT 57.587 34.783 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.468326 GAAGGGAGGCGATGAGGGC 62.468 68.421 0.00 0.00 0.00 5.19
6 7 2.419198 CGGAAGGGAGGCGATGAG 59.581 66.667 0.00 0.00 0.00 2.90
7 8 3.849951 GCGGAAGGGAGGCGATGA 61.850 66.667 0.00 0.00 0.00 2.92
8 9 4.918201 GGCGGAAGGGAGGCGATG 62.918 72.222 0.00 0.00 0.00 3.84
31 32 4.166011 GAGTTGCGTCCGCCATGC 62.166 66.667 9.43 0.00 41.09 4.06
32 33 0.809636 TATGAGTTGCGTCCGCCATG 60.810 55.000 9.43 0.00 41.09 3.66
33 34 0.106708 ATATGAGTTGCGTCCGCCAT 59.893 50.000 9.43 7.67 41.09 4.40
34 35 0.529773 GATATGAGTTGCGTCCGCCA 60.530 55.000 9.43 0.00 41.09 5.69
35 36 0.529773 TGATATGAGTTGCGTCCGCC 60.530 55.000 9.43 0.00 41.09 6.13
36 37 0.577269 GTGATATGAGTTGCGTCCGC 59.423 55.000 4.42 4.42 42.35 5.54
37 38 1.588404 GTGTGATATGAGTTGCGTCCG 59.412 52.381 0.00 0.00 0.00 4.79
38 39 1.588404 CGTGTGATATGAGTTGCGTCC 59.412 52.381 0.00 0.00 0.00 4.79
39 40 2.279136 GTCGTGTGATATGAGTTGCGTC 59.721 50.000 0.00 0.00 0.00 5.19
40 41 2.259618 GTCGTGTGATATGAGTTGCGT 58.740 47.619 0.00 0.00 0.00 5.24
41 42 2.258755 TGTCGTGTGATATGAGTTGCG 58.741 47.619 0.00 0.00 0.00 4.85
42 43 3.865164 TCATGTCGTGTGATATGAGTTGC 59.135 43.478 1.24 0.00 44.69 4.17
47 48 4.142182 TGCTCTTCATGTCGTGTGATATGA 60.142 41.667 1.24 1.24 46.91 2.15
48 49 4.114794 TGCTCTTCATGTCGTGTGATATG 58.885 43.478 0.00 0.00 43.05 1.78
49 50 4.391405 TGCTCTTCATGTCGTGTGATAT 57.609 40.909 0.00 0.00 0.00 1.63
50 51 3.866883 TGCTCTTCATGTCGTGTGATA 57.133 42.857 0.00 0.00 0.00 2.15
51 52 2.738846 GTTGCTCTTCATGTCGTGTGAT 59.261 45.455 0.00 0.00 0.00 3.06
52 53 2.135139 GTTGCTCTTCATGTCGTGTGA 58.865 47.619 0.00 0.00 0.00 3.58
53 54 1.866601 TGTTGCTCTTCATGTCGTGTG 59.133 47.619 0.00 0.00 0.00 3.82
54 55 1.867233 GTGTTGCTCTTCATGTCGTGT 59.133 47.619 0.00 0.00 0.00 4.49
55 56 1.866601 TGTGTTGCTCTTCATGTCGTG 59.133 47.619 0.00 0.00 0.00 4.35
56 57 2.238942 TGTGTTGCTCTTCATGTCGT 57.761 45.000 0.00 0.00 0.00 4.34
57 58 3.062639 GGTATGTGTTGCTCTTCATGTCG 59.937 47.826 0.00 0.00 0.00 4.35
58 59 3.062639 CGGTATGTGTTGCTCTTCATGTC 59.937 47.826 0.00 0.00 0.00 3.06
59 60 3.002791 CGGTATGTGTTGCTCTTCATGT 58.997 45.455 0.00 0.00 0.00 3.21
60 61 2.223112 GCGGTATGTGTTGCTCTTCATG 60.223 50.000 0.00 0.00 0.00 3.07
61 62 2.009774 GCGGTATGTGTTGCTCTTCAT 58.990 47.619 0.00 0.00 0.00 2.57
62 63 1.438651 GCGGTATGTGTTGCTCTTCA 58.561 50.000 0.00 0.00 0.00 3.02
63 64 0.727398 GGCGGTATGTGTTGCTCTTC 59.273 55.000 0.00 0.00 0.00 2.87
64 65 0.036164 TGGCGGTATGTGTTGCTCTT 59.964 50.000 0.00 0.00 0.00 2.85
65 66 0.036164 TTGGCGGTATGTGTTGCTCT 59.964 50.000 0.00 0.00 0.00 4.09
66 67 0.447801 CTTGGCGGTATGTGTTGCTC 59.552 55.000 0.00 0.00 0.00 4.26
67 68 0.036164 TCTTGGCGGTATGTGTTGCT 59.964 50.000 0.00 0.00 0.00 3.91
68 69 0.447801 CTCTTGGCGGTATGTGTTGC 59.552 55.000 0.00 0.00 0.00 4.17
69 70 2.093306 TCTCTTGGCGGTATGTGTTG 57.907 50.000 0.00 0.00 0.00 3.33
70 71 2.423577 GTTCTCTTGGCGGTATGTGTT 58.576 47.619 0.00 0.00 0.00 3.32
71 72 1.671850 CGTTCTCTTGGCGGTATGTGT 60.672 52.381 0.00 0.00 0.00 3.72
72 73 0.999406 CGTTCTCTTGGCGGTATGTG 59.001 55.000 0.00 0.00 0.00 3.21
73 74 0.739813 GCGTTCTCTTGGCGGTATGT 60.740 55.000 0.00 0.00 0.00 2.29
74 75 1.429148 GGCGTTCTCTTGGCGGTATG 61.429 60.000 0.00 0.00 0.00 2.39
75 76 1.153429 GGCGTTCTCTTGGCGGTAT 60.153 57.895 0.00 0.00 0.00 2.73
76 77 1.823169 AAGGCGTTCTCTTGGCGGTA 61.823 55.000 0.00 0.00 35.52 4.02
77 78 3.178540 AAGGCGTTCTCTTGGCGGT 62.179 57.895 0.00 0.00 35.52 5.68
78 79 2.358737 AAGGCGTTCTCTTGGCGG 60.359 61.111 0.00 0.00 35.52 6.13
79 80 1.374758 AGAAGGCGTTCTCTTGGCG 60.375 57.895 15.73 0.00 38.84 5.69
80 81 4.703703 AGAAGGCGTTCTCTTGGC 57.296 55.556 15.73 0.00 38.84 4.52
86 87 0.539051 CTCCATGGAGAAGGCGTTCT 59.461 55.000 34.54 21.00 46.32 3.01
87 88 1.092345 GCTCCATGGAGAAGGCGTTC 61.092 60.000 40.29 19.11 44.53 3.95
88 89 1.078143 GCTCCATGGAGAAGGCGTT 60.078 57.895 40.29 0.00 44.53 4.84
89 90 1.965754 GAGCTCCATGGAGAAGGCGT 61.966 60.000 40.29 18.82 44.53 5.68
90 91 1.227497 GAGCTCCATGGAGAAGGCG 60.227 63.158 40.29 18.07 44.53 5.52
91 92 0.179051 CAGAGCTCCATGGAGAAGGC 60.179 60.000 40.29 27.33 44.53 4.35
92 93 0.179051 GCAGAGCTCCATGGAGAAGG 60.179 60.000 40.29 26.28 44.53 3.46
93 94 0.179051 GGCAGAGCTCCATGGAGAAG 60.179 60.000 40.29 26.21 44.53 2.85
94 95 1.630126 GGGCAGAGCTCCATGGAGAA 61.630 60.000 40.29 8.81 44.53 2.87
95 96 2.068821 GGGCAGAGCTCCATGGAGA 61.069 63.158 40.29 9.63 44.53 3.71
96 97 2.509916 GGGCAGAGCTCCATGGAG 59.490 66.667 33.73 33.73 44.56 3.86
97 98 3.473647 CGGGCAGAGCTCCATGGA 61.474 66.667 15.27 15.27 0.00 3.41
98 99 4.559063 CCGGGCAGAGCTCCATGG 62.559 72.222 10.93 4.97 0.00 3.66
99 100 3.746949 GACCGGGCAGAGCTCCATG 62.747 68.421 10.93 4.12 0.00 3.66
100 101 3.474570 GACCGGGCAGAGCTCCAT 61.475 66.667 10.93 0.00 0.00 3.41
101 102 4.704103 AGACCGGGCAGAGCTCCA 62.704 66.667 11.69 0.00 0.00 3.86
102 103 4.154347 CAGACCGGGCAGAGCTCC 62.154 72.222 11.69 0.00 0.00 4.70
103 104 4.828925 GCAGACCGGGCAGAGCTC 62.829 72.222 11.69 5.27 0.00 4.09
106 107 4.767255 GTGGCAGACCGGGCAGAG 62.767 72.222 11.69 0.00 44.63 3.35
115 116 4.083862 GAGGTCCCCGTGGCAGAC 62.084 72.222 0.00 0.00 0.00 3.51
120 121 2.995574 AAGACGAGGTCCCCGTGG 60.996 66.667 1.91 0.00 40.67 4.94
121 122 2.572284 GAAGACGAGGTCCCCGTG 59.428 66.667 1.91 0.00 40.67 4.94
122 123 2.679287 GGAAGACGAGGTCCCCGT 60.679 66.667 0.00 0.00 43.56 5.28
123 124 2.362632 AGGAAGACGAGGTCCCCG 60.363 66.667 0.00 0.00 34.13 5.73
124 125 2.059190 GGAGGAAGACGAGGTCCCC 61.059 68.421 0.00 0.00 34.13 4.81
125 126 2.059190 GGGAGGAAGACGAGGTCCC 61.059 68.421 0.00 0.00 40.27 4.46
126 127 2.416432 CGGGAGGAAGACGAGGTCC 61.416 68.421 0.00 0.00 32.18 4.46
127 128 1.378250 TCGGGAGGAAGACGAGGTC 60.378 63.158 0.00 0.00 32.29 3.85
128 129 2.761844 TCGGGAGGAAGACGAGGT 59.238 61.111 0.00 0.00 32.29 3.85
140 141 4.689549 TTCACGCCTCCCTCGGGA 62.690 66.667 4.32 4.32 42.90 5.14
141 142 4.148825 CTTCACGCCTCCCTCGGG 62.149 72.222 0.00 0.00 0.00 5.14
142 143 4.148825 CCTTCACGCCTCCCTCGG 62.149 72.222 0.00 0.00 0.00 4.63
143 144 3.358076 GACCTTCACGCCTCCCTCG 62.358 68.421 0.00 0.00 0.00 4.63
144 145 2.283529 TGACCTTCACGCCTCCCTC 61.284 63.158 0.00 0.00 0.00 4.30
145 146 2.203788 TGACCTTCACGCCTCCCT 60.204 61.111 0.00 0.00 0.00 4.20
146 147 2.047179 GTGACCTTCACGCCTCCC 60.047 66.667 0.00 0.00 37.67 4.30
154 155 1.112916 TCCAGCGTCAGTGACCTTCA 61.113 55.000 17.57 2.34 0.00 3.02
155 156 0.667792 GTCCAGCGTCAGTGACCTTC 60.668 60.000 17.57 7.15 0.00 3.46
156 157 1.367840 GTCCAGCGTCAGTGACCTT 59.632 57.895 17.57 3.06 0.00 3.50
157 158 2.574955 GGTCCAGCGTCAGTGACCT 61.575 63.158 17.57 12.30 43.16 3.85
158 159 2.048127 GGTCCAGCGTCAGTGACC 60.048 66.667 17.57 10.25 40.40 4.02
159 160 1.080434 GAGGTCCAGCGTCAGTGAC 60.080 63.158 13.56 13.56 32.62 3.67
160 161 2.276116 GGAGGTCCAGCGTCAGTGA 61.276 63.158 0.00 0.00 35.64 3.41
161 162 2.262915 GGAGGTCCAGCGTCAGTG 59.737 66.667 0.00 0.00 35.64 3.66
162 163 2.203640 TGGAGGTCCAGCGTCAGT 60.204 61.111 0.00 0.00 42.01 3.41
170 171 2.203379 TGACGTCGTGGAGGTCCA 60.203 61.111 11.62 0.00 43.91 4.02
171 172 2.257676 GTGACGTCGTGGAGGTCC 59.742 66.667 11.62 4.38 43.91 4.46
172 173 2.257676 GGTGACGTCGTGGAGGTC 59.742 66.667 11.62 10.57 44.52 3.85
173 174 2.520020 TGGTGACGTCGTGGAGGT 60.520 61.111 11.62 0.00 33.19 3.85
174 175 2.049433 GTGGTGACGTCGTGGAGG 60.049 66.667 11.62 0.00 0.00 4.30
175 176 2.049433 GGTGGTGACGTCGTGGAG 60.049 66.667 11.62 0.00 0.00 3.86
176 177 3.608662 GGGTGGTGACGTCGTGGA 61.609 66.667 11.62 0.00 0.00 4.02
177 178 3.918977 TGGGTGGTGACGTCGTGG 61.919 66.667 11.62 0.00 0.00 4.94
178 179 2.660552 GTGGGTGGTGACGTCGTG 60.661 66.667 11.62 0.00 0.00 4.35
179 180 3.920196 GGTGGGTGGTGACGTCGT 61.920 66.667 11.62 0.00 0.00 4.34
203 204 1.134280 ACTTCTTCATGCCGAGATGGG 60.134 52.381 0.00 0.00 38.63 4.00
204 205 2.322355 ACTTCTTCATGCCGAGATGG 57.678 50.000 0.00 0.00 42.50 3.51
205 206 3.785486 TGTACTTCTTCATGCCGAGATG 58.215 45.455 0.00 0.00 0.00 2.90
206 207 4.184629 GTTGTACTTCTTCATGCCGAGAT 58.815 43.478 0.00 0.00 0.00 2.75
207 208 3.585862 GTTGTACTTCTTCATGCCGAGA 58.414 45.455 0.00 0.00 0.00 4.04
208 209 2.673368 GGTTGTACTTCTTCATGCCGAG 59.327 50.000 0.00 0.00 0.00 4.63
209 210 2.037902 TGGTTGTACTTCTTCATGCCGA 59.962 45.455 0.00 0.00 0.00 5.54
210 211 2.416547 CTGGTTGTACTTCTTCATGCCG 59.583 50.000 0.00 0.00 0.00 5.69
211 212 2.162408 GCTGGTTGTACTTCTTCATGCC 59.838 50.000 0.00 0.00 0.00 4.40
212 213 2.813754 TGCTGGTTGTACTTCTTCATGC 59.186 45.455 0.00 0.00 0.00 4.06
213 214 3.189287 GGTGCTGGTTGTACTTCTTCATG 59.811 47.826 0.00 0.00 0.00 3.07
214 215 3.412386 GGTGCTGGTTGTACTTCTTCAT 58.588 45.455 0.00 0.00 0.00 2.57
215 216 2.805295 CGGTGCTGGTTGTACTTCTTCA 60.805 50.000 0.00 0.00 0.00 3.02
216 217 1.798813 CGGTGCTGGTTGTACTTCTTC 59.201 52.381 0.00 0.00 0.00 2.87
217 218 1.542547 CCGGTGCTGGTTGTACTTCTT 60.543 52.381 0.00 0.00 0.00 2.52
218 219 0.034896 CCGGTGCTGGTTGTACTTCT 59.965 55.000 0.00 0.00 0.00 2.85
219 220 0.250166 ACCGGTGCTGGTTGTACTTC 60.250 55.000 6.12 0.00 39.99 3.01
220 221 1.834301 ACCGGTGCTGGTTGTACTT 59.166 52.632 6.12 0.00 39.99 2.24
221 222 3.558475 ACCGGTGCTGGTTGTACT 58.442 55.556 6.12 0.00 39.99 2.73
227 228 4.681978 GCTCGAACCGGTGCTGGT 62.682 66.667 8.52 0.00 46.67 4.00
228 229 4.379243 AGCTCGAACCGGTGCTGG 62.379 66.667 15.73 6.80 36.31 4.85
229 230 2.811317 GAGCTCGAACCGGTGCTG 60.811 66.667 20.73 9.77 37.26 4.41
230 231 4.421479 CGAGCTCGAACCGGTGCT 62.421 66.667 32.06 16.36 43.02 4.40
257 258 1.516603 GACTCCGTAAGCTGTCGGC 60.517 63.158 20.47 0.00 45.44 5.54
258 259 0.179161 CAGACTCCGTAAGCTGTCGG 60.179 60.000 19.58 19.58 46.93 4.79
259 260 0.522180 ACAGACTCCGTAAGCTGTCG 59.478 55.000 0.00 0.00 37.63 4.35
260 261 2.288273 ACAACAGACTCCGTAAGCTGTC 60.288 50.000 0.00 0.00 39.72 3.51
261 262 1.687123 ACAACAGACTCCGTAAGCTGT 59.313 47.619 0.00 0.00 41.26 4.40
262 263 2.061773 CACAACAGACTCCGTAAGCTG 58.938 52.381 0.00 0.00 36.09 4.24
263 264 1.605712 GCACAACAGACTCCGTAAGCT 60.606 52.381 0.00 0.00 0.00 3.74
264 265 0.790814 GCACAACAGACTCCGTAAGC 59.209 55.000 0.00 0.00 0.00 3.09
265 266 2.061773 CAGCACAACAGACTCCGTAAG 58.938 52.381 0.00 0.00 0.00 2.34
266 267 1.270094 CCAGCACAACAGACTCCGTAA 60.270 52.381 0.00 0.00 0.00 3.18
267 268 0.317160 CCAGCACAACAGACTCCGTA 59.683 55.000 0.00 0.00 0.00 4.02
268 269 1.069765 CCAGCACAACAGACTCCGT 59.930 57.895 0.00 0.00 0.00 4.69
269 270 0.946221 GTCCAGCACAACAGACTCCG 60.946 60.000 0.00 0.00 0.00 4.63
270 271 0.946221 CGTCCAGCACAACAGACTCC 60.946 60.000 0.00 0.00 0.00 3.85
271 272 0.249489 ACGTCCAGCACAACAGACTC 60.249 55.000 0.00 0.00 0.00 3.36
272 273 0.178068 AACGTCCAGCACAACAGACT 59.822 50.000 0.00 0.00 0.00 3.24
273 274 0.304705 CAACGTCCAGCACAACAGAC 59.695 55.000 0.00 0.00 0.00 3.51
274 275 1.436195 GCAACGTCCAGCACAACAGA 61.436 55.000 0.00 0.00 0.00 3.41
275 276 1.009675 GCAACGTCCAGCACAACAG 60.010 57.895 0.00 0.00 0.00 3.16
276 277 2.477176 GGCAACGTCCAGCACAACA 61.477 57.895 9.36 0.00 0.00 3.33
277 278 2.331451 GGCAACGTCCAGCACAAC 59.669 61.111 9.36 0.00 0.00 3.32
278 279 2.904866 GGGCAACGTCCAGCACAA 60.905 61.111 9.36 0.00 33.42 3.33
279 280 4.947147 GGGGCAACGTCCAGCACA 62.947 66.667 11.23 0.00 35.37 4.57
283 284 4.760047 CGAGGGGGCAACGTCCAG 62.760 72.222 0.00 0.00 33.57 3.86
317 318 4.605967 GTGTGCACGCCGTTGTGG 62.606 66.667 19.81 0.00 40.26 4.17
347 348 2.521958 ATTCCTGCCCAGTTCCGACG 62.522 60.000 0.00 0.00 0.00 5.12
348 349 1.026718 CATTCCTGCCCAGTTCCGAC 61.027 60.000 0.00 0.00 0.00 4.79
349 350 1.198094 TCATTCCTGCCCAGTTCCGA 61.198 55.000 0.00 0.00 0.00 4.55
350 351 1.026718 GTCATTCCTGCCCAGTTCCG 61.027 60.000 0.00 0.00 0.00 4.30
351 352 1.026718 CGTCATTCCTGCCCAGTTCC 61.027 60.000 0.00 0.00 0.00 3.62
352 353 1.648467 GCGTCATTCCTGCCCAGTTC 61.648 60.000 0.00 0.00 0.00 3.01
353 354 1.675641 GCGTCATTCCTGCCCAGTT 60.676 57.895 0.00 0.00 0.00 3.16
354 355 2.045926 GCGTCATTCCTGCCCAGT 60.046 61.111 0.00 0.00 0.00 4.00
355 356 2.825836 GGCGTCATTCCTGCCCAG 60.826 66.667 0.00 0.00 43.06 4.45
359 360 3.017323 CGATGGCGTCATTCCTGC 58.983 61.111 2.92 0.00 32.98 4.85
393 394 2.823829 GCTTATGCGTTGCCCGAGG 61.824 63.158 0.00 0.00 39.56 4.63
394 395 2.709475 GCTTATGCGTTGCCCGAG 59.291 61.111 0.00 0.00 39.56 4.63
395 396 2.822255 GGCTTATGCGTTGCCCGA 60.822 61.111 10.49 0.00 40.71 5.14
398 399 2.753849 TGGGGCTTATGCGTTGCC 60.754 61.111 12.56 12.56 45.42 4.52
399 400 2.800736 CTGGGGCTTATGCGTTGC 59.199 61.111 0.00 0.00 40.82 4.17
400 401 2.800736 GCTGGGGCTTATGCGTTG 59.199 61.111 0.00 0.00 40.82 4.10
401 402 2.824041 CGCTGGGGCTTATGCGTT 60.824 61.111 0.00 0.00 42.93 4.84
404 405 0.952984 GAGATCGCTGGGGCTTATGC 60.953 60.000 0.00 0.00 36.09 3.14
405 406 0.668706 CGAGATCGCTGGGGCTTATG 60.669 60.000 0.00 0.00 36.09 1.90
406 407 1.668294 CGAGATCGCTGGGGCTTAT 59.332 57.895 0.00 0.00 36.09 1.73
407 408 3.129300 CGAGATCGCTGGGGCTTA 58.871 61.111 0.00 0.00 36.09 3.09
424 425 2.979130 GGAGATTGTAGCCGAGTGC 58.021 57.895 0.00 0.00 41.71 4.40
430 431 2.967615 GCCGCGGAGATTGTAGCC 60.968 66.667 33.48 2.06 0.00 3.93
431 432 3.330853 CGCCGCGGAGATTGTAGC 61.331 66.667 33.48 8.97 0.00 3.58
432 433 3.330853 GCGCCGCGGAGATTGTAG 61.331 66.667 33.84 11.05 0.00 2.74
450 451 4.043200 GAGGTTGTTGGCGCTGGC 62.043 66.667 7.64 0.00 38.90 4.85
451 452 2.192861 TTGAGGTTGTTGGCGCTGG 61.193 57.895 7.64 0.00 0.00 4.85
452 453 1.008538 GTTGAGGTTGTTGGCGCTG 60.009 57.895 7.64 0.00 0.00 5.18
453 454 2.193536 GGTTGAGGTTGTTGGCGCT 61.194 57.895 7.64 0.00 0.00 5.92
454 455 0.887387 TAGGTTGAGGTTGTTGGCGC 60.887 55.000 0.00 0.00 0.00 6.53
455 456 1.156736 CTAGGTTGAGGTTGTTGGCG 58.843 55.000 0.00 0.00 0.00 5.69
456 457 2.561478 TCTAGGTTGAGGTTGTTGGC 57.439 50.000 0.00 0.00 0.00 4.52
457 458 4.286297 TCATCTAGGTTGAGGTTGTTGG 57.714 45.455 0.00 0.00 0.00 3.77
458 459 5.124457 CCATTCATCTAGGTTGAGGTTGTTG 59.876 44.000 0.00 0.00 0.00 3.33
459 460 5.222130 ACCATTCATCTAGGTTGAGGTTGTT 60.222 40.000 0.00 0.00 29.58 2.83
460 461 4.289672 ACCATTCATCTAGGTTGAGGTTGT 59.710 41.667 0.00 0.00 29.58 3.32
461 462 4.848357 ACCATTCATCTAGGTTGAGGTTG 58.152 43.478 0.00 0.00 29.58 3.77
462 463 4.536090 TGACCATTCATCTAGGTTGAGGTT 59.464 41.667 8.13 0.00 35.36 3.50
463 464 4.104086 TGACCATTCATCTAGGTTGAGGT 58.896 43.478 7.03 7.03 35.36 3.85
464 465 4.406972 TCTGACCATTCATCTAGGTTGAGG 59.593 45.833 0.00 0.00 35.36 3.86
465 466 5.599732 CTCTGACCATTCATCTAGGTTGAG 58.400 45.833 0.00 0.00 35.36 3.02
466 467 4.141846 GCTCTGACCATTCATCTAGGTTGA 60.142 45.833 0.00 0.00 35.36 3.18
467 468 4.125703 GCTCTGACCATTCATCTAGGTTG 58.874 47.826 0.00 0.00 35.36 3.77
468 469 3.135530 GGCTCTGACCATTCATCTAGGTT 59.864 47.826 0.00 0.00 35.36 3.50
469 470 2.703007 GGCTCTGACCATTCATCTAGGT 59.297 50.000 0.00 0.00 38.63 3.08
470 471 2.702478 TGGCTCTGACCATTCATCTAGG 59.298 50.000 0.00 0.00 33.75 3.02
471 472 3.387374 AGTGGCTCTGACCATTCATCTAG 59.613 47.826 3.00 0.00 43.01 2.43
472 473 3.378512 AGTGGCTCTGACCATTCATCTA 58.621 45.455 3.00 0.00 43.01 1.98
473 474 2.194859 AGTGGCTCTGACCATTCATCT 58.805 47.619 3.00 0.00 43.01 2.90
474 475 2.706339 AGTGGCTCTGACCATTCATC 57.294 50.000 3.00 0.00 43.01 2.92
475 476 3.110705 AGTAGTGGCTCTGACCATTCAT 58.889 45.455 0.00 0.00 43.01 2.57
476 477 2.540383 AGTAGTGGCTCTGACCATTCA 58.460 47.619 0.00 0.00 43.01 2.57
477 478 3.526534 GAAGTAGTGGCTCTGACCATTC 58.473 50.000 0.00 0.66 43.01 2.67
478 479 2.237392 GGAAGTAGTGGCTCTGACCATT 59.763 50.000 0.00 2.16 43.01 3.16
479 480 1.834263 GGAAGTAGTGGCTCTGACCAT 59.166 52.381 0.00 0.00 43.01 3.55
480 481 1.267121 GGAAGTAGTGGCTCTGACCA 58.733 55.000 0.00 0.00 37.38 4.02
481 482 0.537653 GGGAAGTAGTGGCTCTGACC 59.462 60.000 0.00 0.00 0.00 4.02
482 483 0.173708 CGGGAAGTAGTGGCTCTGAC 59.826 60.000 0.00 0.00 0.00 3.51
483 484 0.970937 CCGGGAAGTAGTGGCTCTGA 60.971 60.000 0.00 0.00 0.00 3.27
484 485 1.517832 CCGGGAAGTAGTGGCTCTG 59.482 63.158 0.00 0.00 0.00 3.35
485 486 2.359967 GCCGGGAAGTAGTGGCTCT 61.360 63.158 2.18 0.00 44.16 4.09
486 487 2.187163 GCCGGGAAGTAGTGGCTC 59.813 66.667 2.18 0.00 44.16 4.70
487 488 3.771160 CGCCGGGAAGTAGTGGCT 61.771 66.667 2.18 0.00 45.36 4.75
505 506 3.175240 CTTGACGAGCGAGCACCG 61.175 66.667 0.00 3.20 42.21 4.94
506 507 1.372997 TTCTTGACGAGCGAGCACC 60.373 57.895 0.00 0.00 0.00 5.01
507 508 0.939577 TGTTCTTGACGAGCGAGCAC 60.940 55.000 0.00 0.00 0.00 4.40
508 509 0.038251 ATGTTCTTGACGAGCGAGCA 60.038 50.000 0.00 0.00 0.00 4.26
509 510 1.071605 AATGTTCTTGACGAGCGAGC 58.928 50.000 0.00 0.00 0.00 5.03
510 511 1.201855 GCAATGTTCTTGACGAGCGAG 60.202 52.381 0.00 0.00 0.00 5.03
511 512 0.790207 GCAATGTTCTTGACGAGCGA 59.210 50.000 0.00 0.00 0.00 4.93
512 513 0.517132 CGCAATGTTCTTGACGAGCG 60.517 55.000 0.00 0.00 38.40 5.03
513 514 0.512952 ACGCAATGTTCTTGACGAGC 59.487 50.000 0.00 0.00 0.00 5.03
514 515 1.201704 CGACGCAATGTTCTTGACGAG 60.202 52.381 0.00 0.00 0.00 4.18
515 516 0.781787 CGACGCAATGTTCTTGACGA 59.218 50.000 0.00 0.00 0.00 4.20
516 517 0.785708 GCGACGCAATGTTCTTGACG 60.786 55.000 16.42 0.00 0.00 4.35
517 518 0.785708 CGCGACGCAATGTTCTTGAC 60.786 55.000 21.35 0.00 0.00 3.18
518 519 1.491127 CGCGACGCAATGTTCTTGA 59.509 52.632 21.35 0.00 0.00 3.02
519 520 1.509787 CCGCGACGCAATGTTCTTG 60.510 57.895 21.35 0.00 0.00 3.02
520 521 2.677003 CCCGCGACGCAATGTTCTT 61.677 57.895 21.35 0.00 0.00 2.52
521 522 3.118454 CCCGCGACGCAATGTTCT 61.118 61.111 21.35 0.00 0.00 3.01
522 523 4.160635 CCCCGCGACGCAATGTTC 62.161 66.667 21.35 0.00 0.00 3.18
531 532 3.423154 CTTGACTTGCCCCGCGAC 61.423 66.667 8.23 0.00 0.00 5.19
532 533 3.876589 GACTTGACTTGCCCCGCGA 62.877 63.158 8.23 0.00 0.00 5.87
533 534 3.423154 GACTTGACTTGCCCCGCG 61.423 66.667 0.00 0.00 0.00 6.46
534 535 1.452145 TTTGACTTGACTTGCCCCGC 61.452 55.000 0.00 0.00 0.00 6.13
535 536 1.028905 TTTTGACTTGACTTGCCCCG 58.971 50.000 0.00 0.00 0.00 5.73
536 537 1.068588 GGTTTTGACTTGACTTGCCCC 59.931 52.381 0.00 0.00 0.00 5.80
537 538 1.269051 CGGTTTTGACTTGACTTGCCC 60.269 52.381 0.00 0.00 0.00 5.36
538 539 1.269051 CCGGTTTTGACTTGACTTGCC 60.269 52.381 0.00 0.00 0.00 4.52
539 540 1.404035 ACCGGTTTTGACTTGACTTGC 59.596 47.619 0.00 0.00 0.00 4.01
540 541 3.434637 CAACCGGTTTTGACTTGACTTG 58.565 45.455 19.55 0.00 0.00 3.16
541 542 2.159296 GCAACCGGTTTTGACTTGACTT 60.159 45.455 19.55 0.00 0.00 3.01
542 543 1.404035 GCAACCGGTTTTGACTTGACT 59.596 47.619 19.55 0.00 0.00 3.41
543 544 1.133407 TGCAACCGGTTTTGACTTGAC 59.867 47.619 19.55 2.59 0.00 3.18
544 545 1.464734 TGCAACCGGTTTTGACTTGA 58.535 45.000 19.55 0.00 0.00 3.02
545 546 2.285827 TTGCAACCGGTTTTGACTTG 57.714 45.000 19.55 6.44 0.00 3.16
546 547 2.223947 GGATTGCAACCGGTTTTGACTT 60.224 45.455 19.55 0.02 0.00 3.01
547 548 1.339929 GGATTGCAACCGGTTTTGACT 59.660 47.619 19.55 1.03 0.00 3.41
548 549 1.339929 AGGATTGCAACCGGTTTTGAC 59.660 47.619 19.55 8.28 0.00 3.18
549 550 1.698506 AGGATTGCAACCGGTTTTGA 58.301 45.000 19.55 6.41 0.00 2.69
550 551 2.403259 GAAGGATTGCAACCGGTTTTG 58.597 47.619 19.55 9.90 0.00 2.44
551 552 1.343142 GGAAGGATTGCAACCGGTTTT 59.657 47.619 19.55 7.58 35.98 2.43
552 553 0.966179 GGAAGGATTGCAACCGGTTT 59.034 50.000 19.55 2.13 35.98 3.27
553 554 0.898326 GGGAAGGATTGCAACCGGTT 60.898 55.000 15.86 15.86 38.65 4.44
554 555 1.304134 GGGAAGGATTGCAACCGGT 60.304 57.895 0.00 0.00 38.65 5.28
555 556 0.897863 TTGGGAAGGATTGCAACCGG 60.898 55.000 0.00 0.00 38.65 5.28
556 557 0.965439 TTTGGGAAGGATTGCAACCG 59.035 50.000 0.00 0.00 38.65 4.44
557 558 2.549992 GGTTTTGGGAAGGATTGCAACC 60.550 50.000 0.00 5.56 38.65 3.77
558 559 2.103941 TGGTTTTGGGAAGGATTGCAAC 59.896 45.455 0.00 0.00 38.65 4.17
559 560 2.103941 GTGGTTTTGGGAAGGATTGCAA 59.896 45.455 0.00 0.00 38.65 4.08
560 561 1.691434 GTGGTTTTGGGAAGGATTGCA 59.309 47.619 0.00 0.00 38.65 4.08
561 562 1.970640 AGTGGTTTTGGGAAGGATTGC 59.029 47.619 0.00 0.00 34.72 3.56
562 563 3.230134 TGAGTGGTTTTGGGAAGGATTG 58.770 45.455 0.00 0.00 0.00 2.67
563 564 3.611025 TGAGTGGTTTTGGGAAGGATT 57.389 42.857 0.00 0.00 0.00 3.01
564 565 3.500343 CTTGAGTGGTTTTGGGAAGGAT 58.500 45.455 0.00 0.00 0.00 3.24
565 566 2.424234 CCTTGAGTGGTTTTGGGAAGGA 60.424 50.000 0.00 0.00 31.85 3.36
566 567 1.963515 CCTTGAGTGGTTTTGGGAAGG 59.036 52.381 0.00 0.00 0.00 3.46
567 568 1.963515 CCCTTGAGTGGTTTTGGGAAG 59.036 52.381 0.00 0.00 36.90 3.46
568 569 1.412361 CCCCTTGAGTGGTTTTGGGAA 60.412 52.381 0.00 0.00 36.90 3.97
569 570 0.187361 CCCCTTGAGTGGTTTTGGGA 59.813 55.000 0.00 0.00 36.90 4.37
570 571 1.471829 GCCCCTTGAGTGGTTTTGGG 61.472 60.000 0.00 0.00 34.58 4.12
571 572 0.469892 AGCCCCTTGAGTGGTTTTGG 60.470 55.000 0.00 0.00 0.00 3.28
572 573 1.413118 AAGCCCCTTGAGTGGTTTTG 58.587 50.000 0.00 0.00 0.00 2.44
573 574 3.542969 ATAAGCCCCTTGAGTGGTTTT 57.457 42.857 0.00 0.00 0.00 2.43
574 575 3.165071 CAATAAGCCCCTTGAGTGGTTT 58.835 45.455 0.00 0.00 0.00 3.27
575 576 2.378547 TCAATAAGCCCCTTGAGTGGTT 59.621 45.455 0.00 0.00 0.00 3.67
576 577 1.992557 TCAATAAGCCCCTTGAGTGGT 59.007 47.619 0.00 0.00 0.00 4.16
577 578 2.806945 TCAATAAGCCCCTTGAGTGG 57.193 50.000 0.00 0.00 0.00 4.00
578 579 2.874701 CGATCAATAAGCCCCTTGAGTG 59.125 50.000 0.00 0.00 35.04 3.51
579 580 2.158755 CCGATCAATAAGCCCCTTGAGT 60.159 50.000 0.00 0.00 35.04 3.41
580 581 2.498167 CCGATCAATAAGCCCCTTGAG 58.502 52.381 0.00 0.00 35.04 3.02
581 582 1.142870 CCCGATCAATAAGCCCCTTGA 59.857 52.381 0.00 0.00 35.95 3.02
582 583 1.133792 ACCCGATCAATAAGCCCCTTG 60.134 52.381 0.00 0.00 0.00 3.61
583 584 1.222567 ACCCGATCAATAAGCCCCTT 58.777 50.000 0.00 0.00 0.00 3.95
584 585 2.112279 TACCCGATCAATAAGCCCCT 57.888 50.000 0.00 0.00 0.00 4.79
585 586 3.081804 CAATACCCGATCAATAAGCCCC 58.918 50.000 0.00 0.00 0.00 5.80
586 587 2.488153 GCAATACCCGATCAATAAGCCC 59.512 50.000 0.00 0.00 0.00 5.19
587 588 3.146066 TGCAATACCCGATCAATAAGCC 58.854 45.455 0.00 0.00 0.00 4.35
588 589 4.065088 TCTGCAATACCCGATCAATAAGC 58.935 43.478 0.00 0.00 0.00 3.09
589 590 6.808008 AATCTGCAATACCCGATCAATAAG 57.192 37.500 0.00 0.00 0.00 1.73
590 591 7.581213 AAAATCTGCAATACCCGATCAATAA 57.419 32.000 0.00 0.00 0.00 1.40
591 592 7.390440 CCTAAAATCTGCAATACCCGATCAATA 59.610 37.037 0.00 0.00 0.00 1.90
592 593 6.207417 CCTAAAATCTGCAATACCCGATCAAT 59.793 38.462 0.00 0.00 0.00 2.57
593 594 5.530915 CCTAAAATCTGCAATACCCGATCAA 59.469 40.000 0.00 0.00 0.00 2.57
594 595 5.063204 CCTAAAATCTGCAATACCCGATCA 58.937 41.667 0.00 0.00 0.00 2.92
595 596 4.455877 CCCTAAAATCTGCAATACCCGATC 59.544 45.833 0.00 0.00 0.00 3.69
596 597 4.398319 CCCTAAAATCTGCAATACCCGAT 58.602 43.478 0.00 0.00 0.00 4.18
597 598 3.434453 CCCCTAAAATCTGCAATACCCGA 60.434 47.826 0.00 0.00 0.00 5.14
598 599 2.884639 CCCCTAAAATCTGCAATACCCG 59.115 50.000 0.00 0.00 0.00 5.28
599 600 4.178956 TCCCCTAAAATCTGCAATACCC 57.821 45.455 0.00 0.00 0.00 3.69
600 601 5.385198 TCATCCCCTAAAATCTGCAATACC 58.615 41.667 0.00 0.00 0.00 2.73
601 602 7.530426 AATCATCCCCTAAAATCTGCAATAC 57.470 36.000 0.00 0.00 0.00 1.89
602 603 9.653516 TTAAATCATCCCCTAAAATCTGCAATA 57.346 29.630 0.00 0.00 0.00 1.90
603 604 8.424133 GTTAAATCATCCCCTAAAATCTGCAAT 58.576 33.333 0.00 0.00 0.00 3.56
604 605 7.147742 GGTTAAATCATCCCCTAAAATCTGCAA 60.148 37.037 0.00 0.00 0.00 4.08
605 606 6.323739 GGTTAAATCATCCCCTAAAATCTGCA 59.676 38.462 0.00 0.00 0.00 4.41
606 607 6.515035 CGGTTAAATCATCCCCTAAAATCTGC 60.515 42.308 0.00 0.00 0.00 4.26
607 608 6.016276 CCGGTTAAATCATCCCCTAAAATCTG 60.016 42.308 0.00 0.00 0.00 2.90
608 609 6.068670 CCGGTTAAATCATCCCCTAAAATCT 58.931 40.000 0.00 0.00 0.00 2.40
609 610 5.831525 ACCGGTTAAATCATCCCCTAAAATC 59.168 40.000 0.00 0.00 0.00 2.17
610 611 5.773091 ACCGGTTAAATCATCCCCTAAAAT 58.227 37.500 0.00 0.00 0.00 1.82
611 612 5.195848 ACCGGTTAAATCATCCCCTAAAA 57.804 39.130 0.00 0.00 0.00 1.52
612 613 4.866327 ACCGGTTAAATCATCCCCTAAA 57.134 40.909 0.00 0.00 0.00 1.85
613 614 4.866327 AACCGGTTAAATCATCCCCTAA 57.134 40.909 20.78 0.00 0.00 2.69
614 615 4.866327 AAACCGGTTAAATCATCCCCTA 57.134 40.909 22.60 0.00 0.00 3.53
615 616 3.750501 AAACCGGTTAAATCATCCCCT 57.249 42.857 22.60 0.00 0.00 4.79
616 617 5.066893 GTCTAAAACCGGTTAAATCATCCCC 59.933 44.000 22.60 0.00 0.00 4.81
617 618 5.884232 AGTCTAAAACCGGTTAAATCATCCC 59.116 40.000 22.60 2.87 0.00 3.85
618 619 6.997239 AGTCTAAAACCGGTTAAATCATCC 57.003 37.500 22.60 4.25 0.00 3.51
619 620 9.983804 CTAAAGTCTAAAACCGGTTAAATCATC 57.016 33.333 22.60 8.34 0.00 2.92
620 621 8.953313 CCTAAAGTCTAAAACCGGTTAAATCAT 58.047 33.333 22.60 0.00 0.00 2.45
621 622 7.391275 CCCTAAAGTCTAAAACCGGTTAAATCA 59.609 37.037 22.60 0.64 0.00 2.57
622 623 7.148188 CCCCTAAAGTCTAAAACCGGTTAAATC 60.148 40.741 22.60 10.46 0.00 2.17
623 624 6.660521 CCCCTAAAGTCTAAAACCGGTTAAAT 59.339 38.462 22.60 12.66 0.00 1.40
624 625 6.003326 CCCCTAAAGTCTAAAACCGGTTAAA 58.997 40.000 22.60 10.86 0.00 1.52
625 626 5.514659 CCCCCTAAAGTCTAAAACCGGTTAA 60.515 44.000 22.60 11.26 0.00 2.01
626 627 4.019411 CCCCCTAAAGTCTAAAACCGGTTA 60.019 45.833 22.60 4.69 0.00 2.85
627 628 3.245016 CCCCCTAAAGTCTAAAACCGGTT 60.245 47.826 15.86 15.86 0.00 4.44
628 629 2.306805 CCCCCTAAAGTCTAAAACCGGT 59.693 50.000 0.00 0.00 0.00 5.28
629 630 2.573009 TCCCCCTAAAGTCTAAAACCGG 59.427 50.000 0.00 0.00 0.00 5.28
630 631 3.986996 TCCCCCTAAAGTCTAAAACCG 57.013 47.619 0.00 0.00 0.00 4.44
631 632 6.722590 TCAAATTCCCCCTAAAGTCTAAAACC 59.277 38.462 0.00 0.00 0.00 3.27
632 633 7.770366 TCAAATTCCCCCTAAAGTCTAAAAC 57.230 36.000 0.00 0.00 0.00 2.43
633 634 7.618117 GGATCAAATTCCCCCTAAAGTCTAAAA 59.382 37.037 0.00 0.00 0.00 1.52
634 635 7.123383 GGATCAAATTCCCCCTAAAGTCTAAA 58.877 38.462 0.00 0.00 0.00 1.85
635 636 6.218730 TGGATCAAATTCCCCCTAAAGTCTAA 59.781 38.462 0.00 0.00 34.67 2.10
636 637 5.734140 TGGATCAAATTCCCCCTAAAGTCTA 59.266 40.000 0.00 0.00 34.67 2.59
637 638 4.544152 TGGATCAAATTCCCCCTAAAGTCT 59.456 41.667 0.00 0.00 34.67 3.24
638 639 4.867086 TGGATCAAATTCCCCCTAAAGTC 58.133 43.478 0.00 0.00 34.67 3.01
639 640 4.965283 TGGATCAAATTCCCCCTAAAGT 57.035 40.909 0.00 0.00 34.67 2.66
640 641 5.272402 AGTTGGATCAAATTCCCCCTAAAG 58.728 41.667 0.00 0.00 34.67 1.85
641 642 5.283876 AGTTGGATCAAATTCCCCCTAAA 57.716 39.130 0.00 0.00 34.67 1.85
642 643 4.965283 AGTTGGATCAAATTCCCCCTAA 57.035 40.909 0.00 0.00 34.67 2.69
643 644 5.293643 TCTAGTTGGATCAAATTCCCCCTA 58.706 41.667 0.00 0.00 34.67 3.53
644 645 4.119155 TCTAGTTGGATCAAATTCCCCCT 58.881 43.478 0.00 0.00 34.67 4.79
645 646 4.519906 TCTAGTTGGATCAAATTCCCCC 57.480 45.455 0.00 0.00 34.67 5.40
646 647 4.829492 CCATCTAGTTGGATCAAATTCCCC 59.171 45.833 13.80 0.00 39.25 4.81
647 648 5.694995 TCCATCTAGTTGGATCAAATTCCC 58.305 41.667 17.08 0.00 40.90 3.97
658 659 4.080356 TCACCCTCAAATCCATCTAGTTGG 60.080 45.833 12.95 12.95 38.18 3.77
659 660 5.102953 TCACCCTCAAATCCATCTAGTTG 57.897 43.478 0.00 0.00 0.00 3.16
660 661 5.779241 TTCACCCTCAAATCCATCTAGTT 57.221 39.130 0.00 0.00 0.00 2.24
661 662 5.779241 TTTCACCCTCAAATCCATCTAGT 57.221 39.130 0.00 0.00 0.00 2.57
662 663 6.183347 ACTTTTCACCCTCAAATCCATCTAG 58.817 40.000 0.00 0.00 0.00 2.43
663 664 6.139679 ACTTTTCACCCTCAAATCCATCTA 57.860 37.500 0.00 0.00 0.00 1.98
664 665 5.003096 ACTTTTCACCCTCAAATCCATCT 57.997 39.130 0.00 0.00 0.00 2.90
665 666 7.775561 AGTATACTTTTCACCCTCAAATCCATC 59.224 37.037 0.00 0.00 0.00 3.51
666 667 7.643123 AGTATACTTTTCACCCTCAAATCCAT 58.357 34.615 0.00 0.00 0.00 3.41
667 668 7.027874 AGTATACTTTTCACCCTCAAATCCA 57.972 36.000 0.00 0.00 0.00 3.41
668 669 7.939784 AAGTATACTTTTCACCCTCAAATCC 57.060 36.000 12.50 0.00 30.82 3.01
669 670 9.232473 AGAAAGTATACTTTTCACCCTCAAATC 57.768 33.333 27.27 12.90 45.37 2.17
670 671 9.588096 AAGAAAGTATACTTTTCACCCTCAAAT 57.412 29.630 27.27 5.00 45.37 2.32
671 672 8.990163 AAGAAAGTATACTTTTCACCCTCAAA 57.010 30.769 27.27 0.00 45.37 2.69
672 673 8.437575 AGAAGAAAGTATACTTTTCACCCTCAA 58.562 33.333 27.27 0.00 45.37 3.02
673 674 7.974504 AGAAGAAAGTATACTTTTCACCCTCA 58.025 34.615 27.27 0.00 45.37 3.86
674 675 9.939802 TTAGAAGAAAGTATACTTTTCACCCTC 57.060 33.333 27.27 15.36 45.37 4.30
675 676 9.722184 GTTAGAAGAAAGTATACTTTTCACCCT 57.278 33.333 27.27 17.95 45.37 4.34
676 677 8.944029 GGTTAGAAGAAAGTATACTTTTCACCC 58.056 37.037 27.27 18.30 45.37 4.61
677 678 9.498176 TGGTTAGAAGAAAGTATACTTTTCACC 57.502 33.333 27.27 23.09 45.37 4.02
721 722 5.811100 GTGTACTTACTGGTTAGAAGATGCC 59.189 44.000 0.00 0.00 0.00 4.40
722 723 6.631962 AGTGTACTTACTGGTTAGAAGATGC 58.368 40.000 0.00 0.00 0.00 3.91
723 724 8.057536 AGAGTGTACTTACTGGTTAGAAGATG 57.942 38.462 0.00 0.00 0.00 2.90
724 725 8.524487 CAAGAGTGTACTTACTGGTTAGAAGAT 58.476 37.037 0.00 0.00 0.00 2.40
725 726 7.039923 CCAAGAGTGTACTTACTGGTTAGAAGA 60.040 40.741 0.00 0.00 0.00 2.87
729 731 6.208994 AGTCCAAGAGTGTACTTACTGGTTAG 59.791 42.308 0.00 0.00 0.00 2.34
742 744 0.977395 GTGGGCTAGTCCAAGAGTGT 59.023 55.000 19.95 0.00 38.72 3.55
835 837 1.752683 GGAGGCTCGTCACTCTCTTA 58.247 55.000 8.69 0.00 34.22 2.10
968 992 2.286885 GTTGGGGATGGGAGGGGA 60.287 66.667 0.00 0.00 0.00 4.81
975 999 2.508439 CGTCGTCGTTGGGGATGG 60.508 66.667 0.00 0.00 0.00 3.51
1155 1179 3.791586 GGGTGGAGGCAGAGGAGC 61.792 72.222 0.00 0.00 0.00 4.70
1317 1341 2.913060 GAGGAGACGGGGATCGGG 60.913 72.222 0.00 0.00 44.45 5.14
1416 1440 2.125106 GTGCGGGTGTCCAGGATC 60.125 66.667 0.00 0.00 0.00 3.36
1542 1566 2.366167 AGAGCCTCGGCCCAGAAT 60.366 61.111 0.00 0.00 43.17 2.40
1569 1593 4.659172 CACCTGGCGCAAGGGGAA 62.659 66.667 33.93 0.00 44.25 3.97
1575 1599 4.947147 GTGGACCACCTGGCGCAA 62.947 66.667 14.16 0.00 39.32 4.85
1770 1794 1.153628 GAGGATTCCACCGACCACG 60.154 63.158 5.29 0.00 39.43 4.94
1821 1845 6.236558 CAGGCATCAGTATCTGGATCATAT 57.763 41.667 0.00 0.00 31.51 1.78
1833 1857 0.249120 CCGTGTTCCAGGCATCAGTA 59.751 55.000 0.00 0.00 0.00 2.74
1840 1864 1.966451 CTTCCACCGTGTTCCAGGC 60.966 63.158 0.00 0.00 0.00 4.85
1918 1942 2.550277 TCCCAGATCAGGTAGAGCAA 57.450 50.000 3.16 0.00 34.30 3.91
1946 1970 8.472007 TTTTTCATTACTAGCTTTCCCTTTCA 57.528 30.769 0.00 0.00 0.00 2.69
1965 1989 3.766591 TGTCCTTCACTTTGCCTTTTTCA 59.233 39.130 0.00 0.00 0.00 2.69
1967 1991 4.162131 ACATGTCCTTCACTTTGCCTTTTT 59.838 37.500 0.00 0.00 0.00 1.94
1969 1993 3.299503 ACATGTCCTTCACTTTGCCTTT 58.700 40.909 0.00 0.00 0.00 3.11
2019 2043 4.148825 CCCTCTTCGGCCCTCGTG 62.149 72.222 0.00 0.00 40.32 4.35
2121 2145 4.825634 CAGCAACCATGTCATAGATCCAAT 59.174 41.667 0.00 0.00 0.00 3.16
2165 2189 7.531857 TTTACCTTTTGATGAAACAGGCATA 57.468 32.000 6.02 0.00 0.00 3.14
2197 2221 9.553064 AAAAGGCATGTATAACAAATCAACAAA 57.447 25.926 0.00 0.00 0.00 2.83
2282 2306 7.011669 AGCAATGAAGCCAAATATAAACAATGC 59.988 33.333 0.00 0.00 34.51 3.56
2299 2323 8.752766 ACAATTAATCTGAAACAGCAATGAAG 57.247 30.769 0.00 0.00 0.00 3.02
2536 2560 5.220043 CGACTCACACGAAACAGCTAAATAG 60.220 44.000 0.00 0.00 0.00 1.73
2537 2561 4.619760 CGACTCACACGAAACAGCTAAATA 59.380 41.667 0.00 0.00 0.00 1.40
2538 2562 3.428870 CGACTCACACGAAACAGCTAAAT 59.571 43.478 0.00 0.00 0.00 1.40
2550 2574 1.068125 TGACCATTACCGACTCACACG 60.068 52.381 0.00 0.00 0.00 4.49
2647 2672 8.410141 AGATTGTTTTCGATAAACTTGGTCAAA 58.590 29.630 17.82 7.81 0.00 2.69
2732 2772 5.045213 ACATCCACAATACCAGGTCAATACA 60.045 40.000 0.00 0.00 0.00 2.29
2968 3008 3.947196 TGCACATTAGACCATGTTGATCC 59.053 43.478 0.00 0.00 35.03 3.36
3048 3088 1.270274 TGCATGAACAACATCACTGCC 59.730 47.619 0.00 0.00 37.07 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.