Multiple sequence alignment - TraesCS2A01G110800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G110800 chr2A 100.000 7226 0 0 1 7226 62321287 62314062 0.000000e+00 13345.0
1 TraesCS2A01G110800 chr2A 86.423 2055 218 24 2066 4108 62360669 62358664 0.000000e+00 2193.0
2 TraesCS2A01G110800 chr2A 82.018 1229 171 19 4342 5548 62358616 62357416 0.000000e+00 1000.0
3 TraesCS2A01G110800 chr2A 85.662 823 90 13 5634 6438 62357453 62356641 0.000000e+00 841.0
4 TraesCS2A01G110800 chr2A 89.286 588 33 14 1373 1943 62361486 62360912 0.000000e+00 710.0
5 TraesCS2A01G110800 chr2A 83.281 317 37 8 6439 6746 62356197 62355888 1.990000e-70 278.0
6 TraesCS2A01G110800 chr2B 87.382 2124 212 20 2065 4178 97342895 97340818 0.000000e+00 2386.0
7 TraesCS2A01G110800 chr2B 87.213 2002 225 18 4342 6318 97374767 97372772 0.000000e+00 2250.0
8 TraesCS2A01G110800 chr2B 82.827 2073 268 37 2042 4108 97376799 97374809 0.000000e+00 1775.0
9 TraesCS2A01G110800 chr2B 88.544 1030 96 11 5634 6643 97339698 97338671 0.000000e+00 1229.0
10 TraesCS2A01G110800 chr2B 84.940 1162 137 16 821 1959 97344160 97343014 0.000000e+00 1142.0
11 TraesCS2A01G110800 chr2B 80.161 872 138 11 4342 5200 97340801 97339952 2.860000e-173 619.0
12 TraesCS2A01G110800 chr2B 92.658 395 23 2 6633 7027 97338628 97338240 1.360000e-156 564.0
13 TraesCS2A01G110800 chr2B 87.550 498 33 14 1 488 97344825 97344347 3.810000e-152 549.0
14 TraesCS2A01G110800 chr2B 82.299 548 70 17 1403 1937 97387290 97386757 3.980000e-122 449.0
15 TraesCS2A01G110800 chr2B 96.059 203 6 2 7025 7226 97337041 97336840 5.400000e-86 329.0
16 TraesCS2A01G110800 chr2B 83.333 300 50 0 5259 5558 97339950 97339651 1.990000e-70 278.0
17 TraesCS2A01G110800 chr2B 86.275 153 10 3 551 703 97344366 97344225 9.710000e-34 156.0
18 TraesCS2A01G110800 chr2B 90.991 111 10 0 4168 4278 97340852 97340742 4.520000e-32 150.0
19 TraesCS2A01G110800 chr2B 97.368 38 1 0 1373 1410 97387939 97387902 1.680000e-06 65.8
20 TraesCS2A01G110800 chr2D 85.203 2122 245 23 2066 4177 62025992 62023930 0.000000e+00 2115.0
21 TraesCS2A01G110800 chr2D 85.974 934 112 13 5522 6438 62022867 62021936 0.000000e+00 981.0
22 TraesCS2A01G110800 chr2D 86.806 576 49 11 1382 1943 62026958 62026396 1.030000e-172 617.0
23 TraesCS2A01G110800 chr2D 79.405 874 149 18 4342 5204 62023912 62023059 8.080000e-164 588.0
24 TraesCS2A01G110800 chr2D 89.163 203 22 0 5259 5461 62023064 62022862 3.350000e-63 254.0
25 TraesCS2A01G110800 chr2D 90.991 111 10 0 4168 4278 62023963 62023853 4.520000e-32 150.0
26 TraesCS2A01G110800 chr7A 73.594 1511 342 44 2200 3671 726712012 726710520 1.790000e-145 527.0
27 TraesCS2A01G110800 chr7A 75.214 1049 235 22 2200 3234 726718740 726717703 2.360000e-129 473.0
28 TraesCS2A01G110800 chr6A 73.623 1289 312 18 2198 3466 613895755 613894475 8.490000e-129 472.0
29 TraesCS2A01G110800 chr6D 73.454 1326 303 37 2158 3466 467787390 467786097 3.070000e-123 453.0
30 TraesCS2A01G110800 chr7B 89.809 157 11 4 518 672 449878370 449878523 5.720000e-46 196.0
31 TraesCS2A01G110800 chr5A 77.841 352 32 25 517 841 691835337 691835669 7.450000e-40 176.0
32 TraesCS2A01G110800 chr4D 77.551 343 40 23 520 841 507272512 507272186 9.640000e-39 172.0
33 TraesCS2A01G110800 chr4D 86.585 82 7 3 764 841 475746720 475746639 3.590000e-13 87.9
34 TraesCS2A01G110800 chr4B 77.778 324 35 21 517 818 654275006 654275314 1.610000e-36 165.0
35 TraesCS2A01G110800 chr1D 86.585 82 7 3 764 841 27849645 27849726 3.590000e-13 87.9
36 TraesCS2A01G110800 chr1D 85.366 82 8 3 764 841 453605671 453605752 1.670000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G110800 chr2A 62314062 62321287 7225 True 13345.000000 13345 100.0000 1 7226 1 chr2A.!!$R1 7225
1 TraesCS2A01G110800 chr2A 62355888 62361486 5598 True 1004.400000 2193 85.3340 1373 6746 5 chr2A.!!$R2 5373
2 TraesCS2A01G110800 chr2B 97372772 97376799 4027 True 2012.500000 2250 85.0200 2042 6318 2 chr2B.!!$R2 4276
3 TraesCS2A01G110800 chr2B 97336840 97344825 7985 True 740.200000 2386 87.7893 1 7226 10 chr2B.!!$R1 7225
4 TraesCS2A01G110800 chr2B 97386757 97387939 1182 True 257.400000 449 89.8335 1373 1937 2 chr2B.!!$R3 564
5 TraesCS2A01G110800 chr2D 62021936 62026958 5022 True 784.166667 2115 86.2570 1382 6438 6 chr2D.!!$R1 5056
6 TraesCS2A01G110800 chr7A 726710520 726712012 1492 True 527.000000 527 73.5940 2200 3671 1 chr7A.!!$R1 1471
7 TraesCS2A01G110800 chr7A 726717703 726718740 1037 True 473.000000 473 75.2140 2200 3234 1 chr7A.!!$R2 1034
8 TraesCS2A01G110800 chr6A 613894475 613895755 1280 True 472.000000 472 73.6230 2198 3466 1 chr6A.!!$R1 1268
9 TraesCS2A01G110800 chr6D 467786097 467787390 1293 True 453.000000 453 73.4540 2158 3466 1 chr6D.!!$R1 1308

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 513 0.040067 GAAACAGGGCAGCTTCGTTG 60.040 55.0 0.00 0.00 0.00 4.10 F
1144 1152 0.099082 CAAGTCCGAGCTCGAGGTAC 59.901 60.0 36.59 25.33 43.02 3.34 F
2106 3117 0.108329 ATGCTGCTGCTGAAAATGCC 60.108 50.0 17.00 0.00 40.48 4.40 F
2626 3646 0.756294 TGTCCCTCGAGAAAAGCACA 59.244 50.0 15.71 4.13 0.00 4.57 F
4318 5395 0.171231 GGAAATGGAGGAACGCTTGC 59.829 55.0 0.00 0.00 0.00 4.01 F
4380 5457 0.035056 AAAATGAGGGGTGCTCTCCG 60.035 55.0 0.00 0.00 0.00 4.63 F
5323 6427 0.391661 AACGTGGCAGTGGCTATCTG 60.392 55.0 18.53 5.57 40.87 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 2230 0.178926 TTTACCGAGGTGGAGGTGGA 60.179 55.0 4.80 0.0 41.51 4.02 R
3063 4083 0.251742 TGAGCCCCACCAATTTCCAG 60.252 55.0 0.00 0.0 0.00 3.86 R
3395 4448 0.947660 TGCGCAGTCAGCTCTTGAAG 60.948 55.0 5.66 0.0 42.61 3.02 R
4361 5438 0.035056 CGGAGAGCACCCCTCATTTT 60.035 55.0 0.00 0.0 43.31 1.82 R
6040 7144 0.039180 TGGAGGGAGCGAAGTCTGTA 59.961 55.0 0.00 0.0 0.00 2.74 R
6221 7325 1.726853 ACAAGCCACGAGTAATCAGC 58.273 50.0 0.00 0.0 0.00 4.26 R
6992 8625 0.321653 GGTGGAACTTGGAGACGCAT 60.322 55.0 0.00 0.0 36.74 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.652313 TGTGGCTAACATTGGGTGC 58.348 52.632 0.00 0.00 32.36 5.01
25 26 0.958382 GGCTAACATTGGGTGCACGA 60.958 55.000 11.45 0.00 0.00 4.35
30 31 1.081242 CATTGGGTGCACGACAAGC 60.081 57.895 23.78 5.97 0.00 4.01
37 38 1.151668 GTGCACGACAAGCTTCATCT 58.848 50.000 0.00 0.00 0.00 2.90
39 40 1.270252 TGCACGACAAGCTTCATCTGA 60.270 47.619 0.00 0.00 0.00 3.27
50 51 1.808945 CTTCATCTGACACTTGCACCC 59.191 52.381 0.00 0.00 0.00 4.61
51 52 1.059098 TCATCTGACACTTGCACCCT 58.941 50.000 0.00 0.00 0.00 4.34
56 57 0.813610 TGACACTTGCACCCTCAACG 60.814 55.000 0.00 0.00 0.00 4.10
76 77 1.442769 GACGTTGCATGTGGATCAGT 58.557 50.000 0.00 0.00 0.00 3.41
86 87 0.596083 GTGGATCAGTCGGCTCGATG 60.596 60.000 6.68 1.99 38.42 3.84
87 88 1.037579 TGGATCAGTCGGCTCGATGT 61.038 55.000 6.68 0.00 38.42 3.06
138 139 9.994432 CTCCACATTTCTAGTACAATGAATTTC 57.006 33.333 14.84 0.00 34.89 2.17
152 153 7.754624 ACAATGAATTTCATTTTTACCCCCTT 58.245 30.769 19.55 0.00 44.03 3.95
156 157 8.684386 TGAATTTCATTTTTACCCCCTTTTTC 57.316 30.769 0.00 0.00 0.00 2.29
160 161 6.120507 TCATTTTTACCCCCTTTTTCCATG 57.879 37.500 0.00 0.00 0.00 3.66
165 166 2.770447 ACCCCCTTTTTCCATGTTTGT 58.230 42.857 0.00 0.00 0.00 2.83
173 174 5.816777 CCTTTTTCCATGTTTGTGACAACAT 59.183 36.000 0.00 2.65 42.62 2.71
182 183 7.923344 CCATGTTTGTGACAACATTTTACCTTA 59.077 33.333 0.00 0.00 42.62 2.69
191 192 9.073475 TGACAACATTTTACCTTATTTAGCAGT 57.927 29.630 0.00 0.00 0.00 4.40
192 193 9.908152 GACAACATTTTACCTTATTTAGCAGTT 57.092 29.630 0.00 0.00 0.00 3.16
228 232 3.629438 ACCAATTTTACCCACGTTTCG 57.371 42.857 0.00 0.00 0.00 3.46
229 233 2.293955 ACCAATTTTACCCACGTTTCGG 59.706 45.455 0.00 0.00 0.00 4.30
239 243 0.725784 CACGTTTCGGTGCTGATTGC 60.726 55.000 0.00 0.00 43.25 3.56
246 250 4.487412 GTGCTGATTGCGCCTGCC 62.487 66.667 4.18 0.00 45.73 4.85
280 284 5.506649 GGTTTGTTTTCTCTGGTTATTCGCA 60.507 40.000 0.00 0.00 0.00 5.10
325 329 3.118454 CGCCGCACCAACCTGTAG 61.118 66.667 0.00 0.00 0.00 2.74
328 332 1.741770 CCGCACCAACCTGTAGAGC 60.742 63.158 0.00 0.00 0.00 4.09
329 333 1.741770 CGCACCAACCTGTAGAGCC 60.742 63.158 0.00 0.00 0.00 4.70
330 334 1.741770 GCACCAACCTGTAGAGCCG 60.742 63.158 0.00 0.00 0.00 5.52
331 335 1.741770 CACCAACCTGTAGAGCCGC 60.742 63.158 0.00 0.00 0.00 6.53
334 338 1.741770 CAACCTGTAGAGCCGCACC 60.742 63.158 0.00 0.00 0.00 5.01
335 339 3.296709 AACCTGTAGAGCCGCACCG 62.297 63.158 0.00 0.00 0.00 4.94
337 341 4.435436 CTGTAGAGCCGCACCGCA 62.435 66.667 0.00 0.00 0.00 5.69
338 342 4.735132 TGTAGAGCCGCACCGCAC 62.735 66.667 0.00 0.00 0.00 5.34
490 498 4.364409 GCGTGCGTCGGGTGAAAC 62.364 66.667 0.00 0.00 40.26 2.78
491 499 2.962786 CGTGCGTCGGGTGAAACA 60.963 61.111 0.00 0.00 39.98 2.83
492 500 2.935955 GTGCGTCGGGTGAAACAG 59.064 61.111 0.00 0.00 39.98 3.16
493 501 2.280524 TGCGTCGGGTGAAACAGG 60.281 61.111 0.00 0.00 39.98 4.00
494 502 3.047877 GCGTCGGGTGAAACAGGG 61.048 66.667 0.00 0.00 39.98 4.45
495 503 3.047877 CGTCGGGTGAAACAGGGC 61.048 66.667 0.00 0.00 39.98 5.19
496 504 2.112297 GTCGGGTGAAACAGGGCA 59.888 61.111 0.00 0.00 39.98 5.36
497 505 1.966451 GTCGGGTGAAACAGGGCAG 60.966 63.158 0.00 0.00 39.98 4.85
498 506 3.365265 CGGGTGAAACAGGGCAGC 61.365 66.667 0.00 0.00 39.98 5.25
499 507 2.116125 GGGTGAAACAGGGCAGCT 59.884 61.111 0.00 0.00 39.98 4.24
500 508 1.531602 GGGTGAAACAGGGCAGCTT 60.532 57.895 0.00 0.00 39.98 3.74
501 509 1.527433 GGGTGAAACAGGGCAGCTTC 61.527 60.000 0.00 0.00 39.98 3.86
502 510 1.576421 GTGAAACAGGGCAGCTTCG 59.424 57.895 0.00 0.00 36.32 3.79
503 511 1.148273 TGAAACAGGGCAGCTTCGT 59.852 52.632 0.00 0.00 0.00 3.85
504 512 0.465460 TGAAACAGGGCAGCTTCGTT 60.465 50.000 0.00 0.00 0.00 3.85
505 513 0.040067 GAAACAGGGCAGCTTCGTTG 60.040 55.000 0.00 0.00 0.00 4.10
506 514 1.455383 AAACAGGGCAGCTTCGTTGG 61.455 55.000 0.00 0.00 0.00 3.77
507 515 3.058160 CAGGGCAGCTTCGTTGGG 61.058 66.667 0.00 0.00 0.00 4.12
508 516 4.351054 AGGGCAGCTTCGTTGGGG 62.351 66.667 0.00 0.00 0.00 4.96
510 518 4.344865 GGCAGCTTCGTTGGGGGA 62.345 66.667 0.00 0.00 0.00 4.81
511 519 3.056328 GCAGCTTCGTTGGGGGAC 61.056 66.667 0.00 0.00 0.00 4.46
512 520 2.742372 CAGCTTCGTTGGGGGACG 60.742 66.667 0.00 0.00 44.06 4.79
513 521 4.016706 AGCTTCGTTGGGGGACGG 62.017 66.667 0.00 0.00 42.98 4.79
515 523 4.323477 CTTCGTTGGGGGACGGCA 62.323 66.667 0.00 0.00 42.98 5.69
516 524 4.629523 TTCGTTGGGGGACGGCAC 62.630 66.667 0.00 0.00 42.98 5.01
539 547 3.755628 CGCGTCGAAGGAGGGGAA 61.756 66.667 0.00 0.00 41.80 3.97
540 548 2.125633 GCGTCGAAGGAGGGGAAC 60.126 66.667 0.00 0.00 0.00 3.62
568 576 4.147322 GAATGCGTGCGTCGGGTG 62.147 66.667 0.00 0.00 40.26 4.61
569 577 4.673298 AATGCGTGCGTCGGGTGA 62.673 61.111 0.00 0.00 40.26 4.02
570 578 3.950794 AATGCGTGCGTCGGGTGAT 62.951 57.895 0.00 0.00 40.26 3.06
581 589 2.035626 GGGTGATGGTGGTGGTGG 59.964 66.667 0.00 0.00 0.00 4.61
632 640 1.303155 ACTGAGAAGGGCTGCTTGC 60.303 57.895 0.00 0.00 41.94 4.01
633 641 2.359107 TGAGAAGGGCTGCTTGCG 60.359 61.111 0.00 0.00 44.05 4.85
634 642 2.359230 GAGAAGGGCTGCTTGCGT 60.359 61.111 0.00 0.00 44.05 5.24
635 643 2.359230 AGAAGGGCTGCTTGCGTC 60.359 61.111 0.00 0.00 44.05 5.19
636 644 3.435186 GAAGGGCTGCTTGCGTCC 61.435 66.667 0.00 1.14 44.05 4.79
637 645 3.909086 GAAGGGCTGCTTGCGTCCT 62.909 63.158 0.00 5.15 44.05 3.85
638 646 3.909086 AAGGGCTGCTTGCGTCCTC 62.909 63.158 10.01 0.00 44.05 3.71
688 696 4.794648 TTCCCAATGAGCGGCGGG 62.795 66.667 9.78 3.72 40.32 6.13
690 698 4.169696 CCCAATGAGCGGCGGGTA 62.170 66.667 9.78 0.00 33.67 3.69
704 712 4.747529 GGTACGGGTGGTGGCGAC 62.748 72.222 0.00 0.00 0.00 5.19
705 713 3.688159 GTACGGGTGGTGGCGACT 61.688 66.667 0.00 0.00 0.00 4.18
718 726 3.842923 CGACTGGCGAGGGAGCAT 61.843 66.667 0.00 0.00 44.57 3.79
719 727 2.202987 GACTGGCGAGGGAGCATG 60.203 66.667 0.00 0.00 39.27 4.06
720 728 4.479993 ACTGGCGAGGGAGCATGC 62.480 66.667 10.51 10.51 39.27 4.06
725 733 4.147449 CGAGGGAGCATGCGGTCA 62.147 66.667 13.01 0.00 41.62 4.02
726 734 2.202987 GAGGGAGCATGCGGTCAG 60.203 66.667 13.01 0.00 41.62 3.51
736 744 3.389206 GCGGTCAGCGTCAAGATC 58.611 61.111 0.00 0.00 35.41 2.75
737 745 2.167861 GCGGTCAGCGTCAAGATCC 61.168 63.158 0.00 0.00 35.41 3.36
738 746 1.874019 CGGTCAGCGTCAAGATCCG 60.874 63.158 0.00 0.00 0.00 4.18
739 747 1.519455 GGTCAGCGTCAAGATCCGG 60.519 63.158 0.00 0.00 0.00 5.14
740 748 1.215647 GTCAGCGTCAAGATCCGGT 59.784 57.895 0.00 0.00 34.78 5.28
741 749 3.786101 CAGCGTCAAGATCCGGTG 58.214 61.111 0.00 6.85 44.60 4.94
742 750 1.811266 CAGCGTCAAGATCCGGTGG 60.811 63.158 0.00 0.00 45.78 4.61
743 751 2.511600 GCGTCAAGATCCGGTGGG 60.512 66.667 0.00 0.00 0.00 4.61
744 752 2.978824 CGTCAAGATCCGGTGGGT 59.021 61.111 0.00 0.00 33.83 4.51
745 753 1.153628 CGTCAAGATCCGGTGGGTC 60.154 63.158 0.00 0.00 33.83 4.46
746 754 1.153628 GTCAAGATCCGGTGGGTCG 60.154 63.158 0.00 0.00 33.83 4.79
747 755 2.511600 CAAGATCCGGTGGGTCGC 60.512 66.667 0.00 0.00 33.83 5.19
748 756 3.782443 AAGATCCGGTGGGTCGCC 61.782 66.667 0.00 0.00 33.83 5.54
796 804 2.771639 CGACGATCCAGCGGAGGAA 61.772 63.158 0.00 0.00 41.92 3.36
799 807 2.427245 CGATCCAGCGGAGGAAGGT 61.427 63.158 3.76 0.00 41.92 3.50
801 809 2.932130 GATCCAGCGGAGGAAGGTGC 62.932 65.000 3.76 0.00 41.92 5.01
802 810 3.710722 CCAGCGGAGGAAGGTGCT 61.711 66.667 0.00 0.00 38.43 4.40
804 812 2.925170 AGCGGAGGAAGGTGCTGT 60.925 61.111 0.00 0.00 36.09 4.40
805 813 2.435059 GCGGAGGAAGGTGCTGTC 60.435 66.667 0.00 0.00 0.00 3.51
806 814 2.266055 CGGAGGAAGGTGCTGTCC 59.734 66.667 0.00 0.00 0.00 4.02
808 816 1.298014 GGAGGAAGGTGCTGTCCTG 59.702 63.158 0.00 0.00 44.57 3.86
809 817 1.376553 GAGGAAGGTGCTGTCCTGC 60.377 63.158 0.00 0.00 44.57 4.85
810 818 2.743928 GGAAGGTGCTGTCCTGCG 60.744 66.667 0.00 0.00 37.93 5.18
811 819 3.426568 GAAGGTGCTGTCCTGCGC 61.427 66.667 0.00 0.00 42.15 6.09
878 886 1.409381 GGCAGCCCATTTCTCTTAGCT 60.409 52.381 0.00 0.00 0.00 3.32
901 909 2.832201 GCCCAGCCCATTCTGCTC 60.832 66.667 0.00 0.00 36.81 4.26
902 910 2.679092 CCCAGCCCATTCTGCTCA 59.321 61.111 0.00 0.00 36.81 4.26
903 911 1.453379 CCCAGCCCATTCTGCTCAG 60.453 63.158 0.00 0.00 36.81 3.35
905 913 0.747283 CCAGCCCATTCTGCTCAGAC 60.747 60.000 0.00 0.00 36.81 3.51
950 958 2.214181 CTTACCGCGTGTCCTCTGCT 62.214 60.000 4.92 0.00 0.00 4.24
952 960 1.651240 TACCGCGTGTCCTCTGCTAC 61.651 60.000 4.92 0.00 0.00 3.58
964 972 3.000819 TGCTACTCCACACCCCCG 61.001 66.667 0.00 0.00 0.00 5.73
1011 1019 2.249413 CTGAAGCCATGGAGGACGCT 62.249 60.000 18.40 0.00 41.22 5.07
1029 1037 1.429148 CTTACCTTGTGCCGGCGATC 61.429 60.000 23.90 15.28 0.00 3.69
1038 1046 3.197790 CCGGCGATCTTGTGGCTG 61.198 66.667 9.30 0.00 37.64 4.85
1039 1047 3.869272 CGGCGATCTTGTGGCTGC 61.869 66.667 0.00 0.00 30.94 5.25
1060 1068 2.046285 CAAACCATCCTCGGCACCC 61.046 63.158 0.00 0.00 0.00 4.61
1065 1073 4.458829 ATCCTCGGCACCCTCGGA 62.459 66.667 0.00 0.00 0.00 4.55
1069 1077 3.447025 CTCGGCACCCTCGGAATCC 62.447 68.421 0.00 0.00 0.00 3.01
1099 1107 2.829043 TTCGTGGATCCGTCAAGCCG 62.829 60.000 7.39 0.81 0.00 5.52
1107 1115 3.121030 CGTCAAGCCGGGCTTCAG 61.121 66.667 30.66 20.51 46.77 3.02
1144 1152 0.099082 CAAGTCCGAGCTCGAGGTAC 59.901 60.000 36.59 25.33 43.02 3.34
1175 1183 2.419198 CTCCGATGCGAAGGGGAG 59.581 66.667 0.00 0.00 40.05 4.30
1177 1185 3.154473 CCGATGCGAAGGGGAGGA 61.154 66.667 0.00 0.00 0.00 3.71
1179 1187 2.107141 GATGCGAAGGGGAGGACG 59.893 66.667 0.00 0.00 0.00 4.79
1236 1244 5.164080 CGATCTCAAAAGGTTTCTGTACGAC 60.164 44.000 0.00 0.00 0.00 4.34
1275 1283 1.034838 AGCTCGACTACTGGAGGCTG 61.035 60.000 0.00 0.00 0.00 4.85
1310 1318 8.265055 AGTCGAAGGAGGTATTGAATTTGAATA 58.735 33.333 0.00 0.00 0.00 1.75
1313 1321 9.669353 CGAAGGAGGTATTGAATTTGAATATTG 57.331 33.333 0.00 0.00 0.00 1.90
1437 2091 0.745128 TTTCAGTCGCCAACACGGTT 60.745 50.000 0.00 0.00 36.97 4.44
1440 2094 1.145377 AGTCGCCAACACGGTTTCT 59.855 52.632 0.00 0.00 36.97 2.52
1443 2097 1.802365 GTCGCCAACACGGTTTCTATT 59.198 47.619 0.00 0.00 36.97 1.73
1536 2198 2.432628 GCAGCCGCAACGACTACT 60.433 61.111 0.00 0.00 38.36 2.57
1563 2228 2.738521 CCGCCACAACGACCTCTG 60.739 66.667 0.00 0.00 34.06 3.35
1564 2229 3.414700 CGCCACAACGACCTCTGC 61.415 66.667 0.00 0.00 34.06 4.26
1565 2230 2.031163 GCCACAACGACCTCTGCT 59.969 61.111 0.00 0.00 0.00 4.24
1566 2231 2.029844 GCCACAACGACCTCTGCTC 61.030 63.158 0.00 0.00 0.00 4.26
1567 2232 1.374758 CCACAACGACCTCTGCTCC 60.375 63.158 0.00 0.00 0.00 4.70
1568 2233 1.367471 CACAACGACCTCTGCTCCA 59.633 57.895 0.00 0.00 0.00 3.86
1569 2234 0.946221 CACAACGACCTCTGCTCCAC 60.946 60.000 0.00 0.00 0.00 4.02
1573 2238 2.716017 CGACCTCTGCTCCACCTCC 61.716 68.421 0.00 0.00 0.00 4.30
1944 2613 2.432444 CCAAGCCATTCAAGGTACGAA 58.568 47.619 0.00 0.00 0.00 3.85
1945 2614 3.016736 CCAAGCCATTCAAGGTACGAAT 58.983 45.455 0.00 0.00 33.33 3.34
1946 2615 3.181497 CCAAGCCATTCAAGGTACGAATG 60.181 47.826 12.48 12.48 46.09 2.67
1947 2616 3.350219 AGCCATTCAAGGTACGAATGT 57.650 42.857 16.11 2.10 45.41 2.71
1948 2617 4.481368 AGCCATTCAAGGTACGAATGTA 57.519 40.909 16.11 0.00 45.41 2.29
1949 2618 4.189231 AGCCATTCAAGGTACGAATGTAC 58.811 43.478 16.11 10.43 45.41 2.90
1966 2635 7.375017 ACGAATGTACGATTTGAAACTCAAAAC 59.625 33.333 5.96 3.13 41.55 2.43
1986 2688 2.923655 ACACGACGCACATCTTATTCTG 59.076 45.455 0.00 0.00 0.00 3.02
1992 2694 3.806521 ACGCACATCTTATTCTGCATCTC 59.193 43.478 0.00 0.00 0.00 2.75
1993 2695 3.121092 CGCACATCTTATTCTGCATCTCG 60.121 47.826 0.00 0.00 0.00 4.04
1994 2696 3.806521 GCACATCTTATTCTGCATCTCGT 59.193 43.478 0.00 0.00 0.00 4.18
1995 2697 4.272018 GCACATCTTATTCTGCATCTCGTT 59.728 41.667 0.00 0.00 0.00 3.85
2010 3011 6.582295 TGCATCTCGTTTTATTCTTTGAAAGC 59.418 34.615 0.00 0.00 0.00 3.51
2011 3012 6.803807 GCATCTCGTTTTATTCTTTGAAAGCT 59.196 34.615 0.00 0.00 0.00 3.74
2027 3036 4.622313 TGAAAGCTTTTATTTGCATCTGCG 59.378 37.500 14.05 0.00 45.83 5.18
2055 3066 2.100252 TCCCTTGTCGTTCTAATAGCCG 59.900 50.000 0.00 0.00 0.00 5.52
2057 3068 3.243771 CCCTTGTCGTTCTAATAGCCGAT 60.244 47.826 5.46 0.00 0.00 4.18
2060 3071 3.220110 TGTCGTTCTAATAGCCGATCCT 58.780 45.455 5.46 0.00 0.00 3.24
2063 3074 2.557056 CGTTCTAATAGCCGATCCTCCA 59.443 50.000 0.00 0.00 0.00 3.86
2106 3117 0.108329 ATGCTGCTGCTGAAAATGCC 60.108 50.000 17.00 0.00 40.48 4.40
2123 3134 2.034066 CACCCCCGTTGCTGTCAT 59.966 61.111 0.00 0.00 0.00 3.06
2130 3141 3.016736 CCCCGTTGCTGTCATTAATTCT 58.983 45.455 0.00 0.00 0.00 2.40
2144 3155 7.560991 TGTCATTAATTCTTCCAGCATACCAAT 59.439 33.333 0.00 0.00 0.00 3.16
2145 3156 9.066892 GTCATTAATTCTTCCAGCATACCAATA 57.933 33.333 0.00 0.00 0.00 1.90
2175 3186 4.037923 ACGAATCAAGAGCCAACACAAATT 59.962 37.500 0.00 0.00 0.00 1.82
2179 3190 4.469657 TCAAGAGCCAACACAAATTACCT 58.530 39.130 0.00 0.00 0.00 3.08
2226 3237 2.098117 GGACGAATTTTCCAGCAGGATG 59.902 50.000 0.00 0.00 45.26 3.51
2250 3261 4.072131 AGGAAATAACACGTCAGTTGCAT 58.928 39.130 1.76 0.00 33.07 3.96
2289 3300 9.390795 GATGTGACAATGAATATAAACATGCTC 57.609 33.333 0.00 0.00 0.00 4.26
2296 3307 8.514594 CAATGAATATAAACATGCTCGGGTTAT 58.485 33.333 0.00 0.00 0.00 1.89
2406 3423 4.202264 GGGAGAGACAAAGAGAAGAACACA 60.202 45.833 0.00 0.00 0.00 3.72
2626 3646 0.756294 TGTCCCTCGAGAAAAGCACA 59.244 50.000 15.71 4.13 0.00 4.57
2722 3742 4.963318 TTAGATGATGTCTGGGATGACC 57.037 45.455 0.00 0.00 37.83 4.02
2821 3841 5.238432 ACGACTAGATATCTCTCTGTTGCAG 59.762 44.000 8.95 0.05 32.66 4.41
2877 3897 4.433615 GTGCTCTGGAAGATGACGATTTA 58.566 43.478 0.00 0.00 45.62 1.40
2894 3914 9.004717 TGACGATTTATGGTTATTGTTCAAAGA 57.995 29.630 0.00 0.00 0.00 2.52
2954 3974 7.040062 TGGAAATCTAACAAACATTGGACGAAT 60.040 33.333 0.00 0.00 34.12 3.34
2962 3982 7.333528 ACAAACATTGGACGAATAATAGCAT 57.666 32.000 0.00 0.00 34.12 3.79
2965 3985 4.083855 ACATTGGACGAATAATAGCATGCG 60.084 41.667 13.01 0.00 32.89 4.73
3041 4061 8.051535 AGTTGATCTTACTGTTGATCATTGGAT 58.948 33.333 19.44 0.00 45.46 3.41
3063 4083 7.926555 TGGATTAATATTCTCAAGGACGAAGAC 59.073 37.037 0.00 0.00 0.00 3.01
3073 4093 3.059352 AGGACGAAGACTGGAAATTGG 57.941 47.619 0.00 0.00 0.00 3.16
3108 4128 1.066716 GGCATCATGGCTGCTTTGAAA 60.067 47.619 17.11 0.00 40.14 2.69
3147 4167 2.419574 GCCGTACCATCTACACCAATGT 60.420 50.000 0.00 0.00 43.30 2.71
3192 4212 4.321230 CCTGACAGTTATTGGTTTCTTGGC 60.321 45.833 0.93 0.00 0.00 4.52
3240 4260 4.036734 TCACAAGGATTTGTCAAACAGAGC 59.963 41.667 0.00 0.00 45.53 4.09
3241 4261 3.319122 ACAAGGATTTGTCAAACAGAGCC 59.681 43.478 0.00 0.00 44.00 4.70
3322 4342 4.706962 ACCTGGGATATTTTCAGCAAGTTC 59.293 41.667 0.00 0.00 0.00 3.01
3330 4353 8.703336 GGATATTTTCAGCAAGTTCAAAAAGAC 58.297 33.333 0.00 0.00 0.00 3.01
3335 4358 4.949856 TCAGCAAGTTCAAAAAGACTCCTT 59.050 37.500 0.00 0.00 0.00 3.36
3339 4362 6.828785 AGCAAGTTCAAAAAGACTCCTTTCTA 59.171 34.615 0.00 0.00 41.46 2.10
3341 4364 7.201741 GCAAGTTCAAAAAGACTCCTTTCTAGT 60.202 37.037 0.00 0.00 41.46 2.57
3342 4365 8.338986 CAAGTTCAAAAAGACTCCTTTCTAGTC 58.661 37.037 0.00 0.00 41.46 2.59
3376 4429 6.946340 TCATATGTTGTGTCTGGTCTTATGT 58.054 36.000 1.90 0.00 0.00 2.29
3389 4442 8.243426 GTCTGGTCTTATGTATGATTTTGCAAA 58.757 33.333 8.05 8.05 0.00 3.68
3395 4448 7.922278 TCTTATGTATGATTTTGCAAAGATGGC 59.078 33.333 12.41 3.76 0.00 4.40
3459 4512 7.080099 GCAATGATATATTGCCAACTGTACAG 58.920 38.462 21.44 21.44 46.21 2.74
3466 4519 2.580962 TGCCAACTGTACAGCATTTGA 58.419 42.857 22.90 2.83 39.28 2.69
3471 4524 5.745294 GCCAACTGTACAGCATTTGATAATG 59.255 40.000 22.90 7.86 43.28 1.90
3498 4563 4.018490 ACAACAAATATCAGCAGCATGGA 58.982 39.130 0.00 0.00 35.86 3.41
3519 4584 4.260497 GGAAACGTGTCTTGGAGTAACAAC 60.260 45.833 5.55 0.00 0.00 3.32
3529 4594 8.671028 TGTCTTGGAGTAACAACTTTAAAGAAC 58.329 33.333 21.92 10.66 0.00 3.01
3657 4725 4.618912 GCACATGATATACGTCTGCTACAG 59.381 45.833 0.00 0.00 0.00 2.74
3680 4748 7.982224 CAGATATCTGCAACATTTCAAGAAGA 58.018 34.615 19.47 0.00 37.15 2.87
3681 4749 8.456471 CAGATATCTGCAACATTTCAAGAAGAA 58.544 33.333 19.47 0.00 37.15 2.52
3744 4812 6.736123 TGTAAATCCTACTCATCTTCGCTAC 58.264 40.000 0.00 0.00 0.00 3.58
3753 4821 6.770746 ACTCATCTTCGCTACCTAAAACTA 57.229 37.500 0.00 0.00 0.00 2.24
3762 4830 3.373130 GCTACCTAAAACTAACGGCCAAG 59.627 47.826 2.24 0.00 0.00 3.61
3766 4834 1.244816 AAAACTAACGGCCAAGGAGC 58.755 50.000 2.24 0.00 0.00 4.70
3787 4855 1.831580 GCAAGGAGATTTGCCTCAGT 58.168 50.000 0.00 0.00 45.93 3.41
3825 4893 5.815581 TGCCACCTTCAAGTATTAGATGTT 58.184 37.500 0.00 0.00 0.00 2.71
3834 4902 8.579850 TTCAAGTATTAGATGTTGGCTCAAAT 57.420 30.769 0.00 0.00 0.00 2.32
3835 4903 8.579850 TCAAGTATTAGATGTTGGCTCAAATT 57.420 30.769 0.00 0.00 0.00 1.82
3836 4904 9.679661 TCAAGTATTAGATGTTGGCTCAAATTA 57.320 29.630 0.00 0.00 0.00 1.40
3853 4924 9.555727 GCTCAAATTACCTTAATGTACCTCATA 57.444 33.333 0.00 0.00 35.48 2.15
3879 4950 4.722194 TGAATAATCTTGTCAGTTTGCGC 58.278 39.130 0.00 0.00 0.00 6.09
3888 4959 0.592637 TCAGTTTGCGCCATCTTGTG 59.407 50.000 4.18 0.00 0.00 3.33
3919 4996 3.940209 TTGCTAGAATTGGCAAGTTGG 57.060 42.857 5.96 0.00 42.45 3.77
3954 5031 6.874134 AGACACTAAACAATTTCAGCGTAGAT 59.126 34.615 0.00 0.00 0.00 1.98
4008 5085 1.019673 CCATGAACGATCTTGCCCAG 58.980 55.000 0.00 0.00 31.18 4.45
4043 5120 8.835467 TCTCAACTTCAAAATGTTAAAACTCG 57.165 30.769 0.00 0.00 0.00 4.18
4086 5163 6.473778 CAGGACTGAGATATAAACGACACTTG 59.526 42.308 0.00 0.00 0.00 3.16
4158 5235 1.329906 GGCAGCAATGAATCTGACTCG 59.670 52.381 0.00 0.00 35.50 4.18
4166 5243 4.743057 ATGAATCTGACTCGGATGACAA 57.257 40.909 0.82 0.00 28.96 3.18
4177 5254 4.633126 ACTCGGATGACAACAATGAATCTG 59.367 41.667 0.00 0.00 34.06 2.90
4178 5255 4.831107 TCGGATGACAACAATGAATCTGA 58.169 39.130 0.00 0.00 36.80 3.27
4179 5256 4.631377 TCGGATGACAACAATGAATCTGAC 59.369 41.667 0.00 0.00 35.53 3.51
4180 5257 4.633126 CGGATGACAACAATGAATCTGACT 59.367 41.667 0.00 0.00 34.37 3.41
4181 5258 5.220548 CGGATGACAACAATGAATCTGACTC 60.221 44.000 0.00 0.00 34.37 3.36
4199 5276 2.941064 ACTCGGATGACAGCAATGAATG 59.059 45.455 0.00 0.00 0.00 2.67
4231 5308 1.819288 TGAGCTCTGAACCTTCTACCG 59.181 52.381 16.19 0.00 0.00 4.02
4268 5345 2.195567 GCTTGCCAACAGAGGTGCA 61.196 57.895 0.00 0.00 0.00 4.57
4269 5346 1.530013 GCTTGCCAACAGAGGTGCAT 61.530 55.000 0.00 0.00 33.08 3.96
4270 5347 1.825090 CTTGCCAACAGAGGTGCATA 58.175 50.000 0.00 0.00 33.08 3.14
4271 5348 2.372264 CTTGCCAACAGAGGTGCATAT 58.628 47.619 0.00 0.00 33.08 1.78
4272 5349 1.753930 TGCCAACAGAGGTGCATATG 58.246 50.000 0.00 0.00 0.00 1.78
4273 5350 1.027357 GCCAACAGAGGTGCATATGG 58.973 55.000 4.56 0.00 0.00 2.74
4274 5351 1.683943 CCAACAGAGGTGCATATGGG 58.316 55.000 4.56 0.00 0.00 4.00
4275 5352 1.064463 CCAACAGAGGTGCATATGGGT 60.064 52.381 4.56 0.00 0.00 4.51
4276 5353 2.292267 CAACAGAGGTGCATATGGGTC 58.708 52.381 4.56 0.00 0.00 4.46
4277 5354 1.885049 ACAGAGGTGCATATGGGTCT 58.115 50.000 4.56 0.00 0.00 3.85
4278 5355 2.200081 ACAGAGGTGCATATGGGTCTT 58.800 47.619 4.56 0.00 0.00 3.01
4279 5356 2.092753 ACAGAGGTGCATATGGGTCTTG 60.093 50.000 4.56 0.00 0.00 3.02
4280 5357 1.133976 AGAGGTGCATATGGGTCTTGC 60.134 52.381 4.56 0.00 36.91 4.01
4281 5358 0.625316 AGGTGCATATGGGTCTTGCA 59.375 50.000 4.56 0.00 43.63 4.08
4282 5359 1.005805 AGGTGCATATGGGTCTTGCAA 59.994 47.619 4.56 0.00 46.91 4.08
4283 5360 1.406539 GGTGCATATGGGTCTTGCAAG 59.593 52.381 20.81 20.81 46.91 4.01
4284 5361 2.094675 GTGCATATGGGTCTTGCAAGT 58.905 47.619 25.19 8.96 46.91 3.16
4285 5362 2.493278 GTGCATATGGGTCTTGCAAGTT 59.507 45.455 25.19 9.48 46.91 2.66
4286 5363 2.754552 TGCATATGGGTCTTGCAAGTTC 59.245 45.455 25.19 18.32 42.95 3.01
4287 5364 3.019564 GCATATGGGTCTTGCAAGTTCT 58.980 45.455 25.19 9.97 36.40 3.01
4288 5365 4.199310 GCATATGGGTCTTGCAAGTTCTA 58.801 43.478 25.19 16.24 36.40 2.10
4289 5366 4.035675 GCATATGGGTCTTGCAAGTTCTAC 59.964 45.833 25.19 15.79 36.40 2.59
4290 5367 2.561478 TGGGTCTTGCAAGTTCTACC 57.439 50.000 25.19 23.00 0.00 3.18
4291 5368 1.771854 TGGGTCTTGCAAGTTCTACCA 59.228 47.619 27.19 22.87 0.00 3.25
4292 5369 2.224523 TGGGTCTTGCAAGTTCTACCAG 60.225 50.000 27.19 3.98 0.00 4.00
4293 5370 1.807142 GGTCTTGCAAGTTCTACCAGC 59.193 52.381 25.19 10.55 0.00 4.85
4294 5371 2.494059 GTCTTGCAAGTTCTACCAGCA 58.506 47.619 25.19 0.00 0.00 4.41
4295 5372 3.077359 GTCTTGCAAGTTCTACCAGCAT 58.923 45.455 25.19 0.00 34.87 3.79
4296 5373 3.126000 GTCTTGCAAGTTCTACCAGCATC 59.874 47.826 25.19 0.00 34.87 3.91
4297 5374 1.725641 TGCAAGTTCTACCAGCATCG 58.274 50.000 0.00 0.00 0.00 3.84
4298 5375 1.001974 TGCAAGTTCTACCAGCATCGT 59.998 47.619 0.00 0.00 0.00 3.73
4299 5376 1.394917 GCAAGTTCTACCAGCATCGTG 59.605 52.381 0.00 0.00 0.00 4.35
4300 5377 2.002586 CAAGTTCTACCAGCATCGTGG 58.997 52.381 0.00 0.00 44.01 4.94
4301 5378 1.557099 AGTTCTACCAGCATCGTGGA 58.443 50.000 0.00 0.00 40.44 4.02
4302 5379 1.899814 AGTTCTACCAGCATCGTGGAA 59.100 47.619 0.00 0.00 40.44 3.53
4303 5380 2.301870 AGTTCTACCAGCATCGTGGAAA 59.698 45.455 0.00 0.00 40.44 3.13
4304 5381 3.055094 AGTTCTACCAGCATCGTGGAAAT 60.055 43.478 0.00 0.00 40.44 2.17
4305 5382 2.905075 TCTACCAGCATCGTGGAAATG 58.095 47.619 0.00 0.00 40.44 2.32
4306 5383 1.942657 CTACCAGCATCGTGGAAATGG 59.057 52.381 0.00 0.00 40.44 3.16
4307 5384 0.327924 ACCAGCATCGTGGAAATGGA 59.672 50.000 0.00 0.00 40.44 3.41
4308 5385 1.019673 CCAGCATCGTGGAAATGGAG 58.980 55.000 0.00 0.00 40.44 3.86
4309 5386 1.019673 CAGCATCGTGGAAATGGAGG 58.980 55.000 0.00 0.00 0.00 4.30
4310 5387 0.911769 AGCATCGTGGAAATGGAGGA 59.088 50.000 0.00 0.00 0.00 3.71
4311 5388 1.281867 AGCATCGTGGAAATGGAGGAA 59.718 47.619 0.00 0.00 0.00 3.36
4312 5389 1.401905 GCATCGTGGAAATGGAGGAAC 59.598 52.381 0.00 0.00 0.00 3.62
4313 5390 1.665679 CATCGTGGAAATGGAGGAACG 59.334 52.381 0.00 0.00 0.00 3.95
4314 5391 0.672401 TCGTGGAAATGGAGGAACGC 60.672 55.000 0.00 0.00 0.00 4.84
4315 5392 0.673644 CGTGGAAATGGAGGAACGCT 60.674 55.000 0.00 0.00 0.00 5.07
4316 5393 1.534729 GTGGAAATGGAGGAACGCTT 58.465 50.000 0.00 0.00 0.00 4.68
4317 5394 1.200020 GTGGAAATGGAGGAACGCTTG 59.800 52.381 0.00 0.00 0.00 4.01
4318 5395 0.171231 GGAAATGGAGGAACGCTTGC 59.829 55.000 0.00 0.00 0.00 4.01
4319 5396 1.168714 GAAATGGAGGAACGCTTGCT 58.831 50.000 0.00 0.00 0.00 3.91
4320 5397 2.356135 GAAATGGAGGAACGCTTGCTA 58.644 47.619 0.00 0.00 0.00 3.49
4321 5398 2.489938 AATGGAGGAACGCTTGCTAA 57.510 45.000 0.00 0.00 0.00 3.09
4322 5399 1.739067 ATGGAGGAACGCTTGCTAAC 58.261 50.000 0.00 0.00 0.00 2.34
4323 5400 0.394938 TGGAGGAACGCTTGCTAACA 59.605 50.000 0.00 0.00 0.00 2.41
4324 5401 0.796927 GGAGGAACGCTTGCTAACAC 59.203 55.000 0.00 0.00 0.00 3.32
4325 5402 1.508632 GAGGAACGCTTGCTAACACA 58.491 50.000 0.00 0.00 0.00 3.72
4326 5403 1.461127 GAGGAACGCTTGCTAACACAG 59.539 52.381 0.00 0.00 0.00 3.66
4327 5404 1.070134 AGGAACGCTTGCTAACACAGA 59.930 47.619 0.00 0.00 0.00 3.41
4328 5405 2.076863 GGAACGCTTGCTAACACAGAT 58.923 47.619 0.00 0.00 0.00 2.90
4329 5406 2.159653 GGAACGCTTGCTAACACAGATG 60.160 50.000 0.00 0.00 0.00 2.90
4330 5407 2.455674 ACGCTTGCTAACACAGATGA 57.544 45.000 0.00 0.00 0.00 2.92
4331 5408 2.766313 ACGCTTGCTAACACAGATGAA 58.234 42.857 0.00 0.00 0.00 2.57
4332 5409 3.338249 ACGCTTGCTAACACAGATGAAT 58.662 40.909 0.00 0.00 0.00 2.57
4333 5410 3.125829 ACGCTTGCTAACACAGATGAATG 59.874 43.478 0.00 0.00 0.00 2.67
4334 5411 3.371898 CGCTTGCTAACACAGATGAATGA 59.628 43.478 0.00 0.00 0.00 2.57
4335 5412 4.493708 CGCTTGCTAACACAGATGAATGAG 60.494 45.833 0.00 0.00 0.00 2.90
4336 5413 4.201891 GCTTGCTAACACAGATGAATGAGG 60.202 45.833 0.00 0.00 0.00 3.86
4337 5414 4.558226 TGCTAACACAGATGAATGAGGT 57.442 40.909 0.00 0.00 0.00 3.85
4338 5415 4.910195 TGCTAACACAGATGAATGAGGTT 58.090 39.130 0.00 0.00 0.00 3.50
4339 5416 4.937620 TGCTAACACAGATGAATGAGGTTC 59.062 41.667 0.00 0.00 37.35 3.62
4340 5417 5.181748 GCTAACACAGATGAATGAGGTTCT 58.818 41.667 0.00 0.00 37.72 3.01
4341 5418 5.645497 GCTAACACAGATGAATGAGGTTCTT 59.355 40.000 0.00 0.00 37.72 2.52
4342 5419 5.954296 AACACAGATGAATGAGGTTCTTG 57.046 39.130 0.00 0.00 37.72 3.02
4343 5420 5.233083 ACACAGATGAATGAGGTTCTTGA 57.767 39.130 0.00 0.00 37.72 3.02
4344 5421 5.624159 ACACAGATGAATGAGGTTCTTGAA 58.376 37.500 0.00 0.00 37.72 2.69
4345 5422 5.471456 ACACAGATGAATGAGGTTCTTGAAC 59.529 40.000 5.03 5.03 37.72 3.18
4346 5423 5.006386 ACAGATGAATGAGGTTCTTGAACC 58.994 41.667 21.28 21.28 43.15 3.62
4356 5433 3.075148 GGTTCTTGAACCTTCTACCAGC 58.925 50.000 21.47 0.00 39.71 4.85
4357 5434 3.496160 GGTTCTTGAACCTTCTACCAGCA 60.496 47.826 21.47 0.00 39.71 4.41
4358 5435 4.327680 GTTCTTGAACCTTCTACCAGCAT 58.672 43.478 2.31 0.00 0.00 3.79
4359 5436 5.488341 GTTCTTGAACCTTCTACCAGCATA 58.512 41.667 2.31 0.00 0.00 3.14
4360 5437 5.344743 TCTTGAACCTTCTACCAGCATAG 57.655 43.478 0.00 0.00 0.00 2.23
4361 5438 5.023452 TCTTGAACCTTCTACCAGCATAGA 58.977 41.667 0.00 0.00 0.00 1.98
4362 5439 5.483937 TCTTGAACCTTCTACCAGCATAGAA 59.516 40.000 5.36 5.36 38.57 2.10
4363 5440 5.755409 TGAACCTTCTACCAGCATAGAAA 57.245 39.130 6.58 0.00 39.98 2.52
4364 5441 6.121776 TGAACCTTCTACCAGCATAGAAAA 57.878 37.500 6.58 0.00 39.98 2.29
4365 5442 6.721318 TGAACCTTCTACCAGCATAGAAAAT 58.279 36.000 6.58 0.00 39.98 1.82
4366 5443 6.599244 TGAACCTTCTACCAGCATAGAAAATG 59.401 38.462 6.58 0.00 39.98 2.32
4367 5444 6.313519 ACCTTCTACCAGCATAGAAAATGA 57.686 37.500 6.58 0.00 39.98 2.57
4368 5445 6.352516 ACCTTCTACCAGCATAGAAAATGAG 58.647 40.000 6.58 0.00 39.98 2.90
4369 5446 5.762218 CCTTCTACCAGCATAGAAAATGAGG 59.238 44.000 6.58 1.67 39.98 3.86
4370 5447 5.296151 TCTACCAGCATAGAAAATGAGGG 57.704 43.478 0.00 0.00 0.00 4.30
4371 5448 3.303351 ACCAGCATAGAAAATGAGGGG 57.697 47.619 0.00 0.00 0.00 4.79
4372 5449 2.582636 ACCAGCATAGAAAATGAGGGGT 59.417 45.455 0.00 0.00 0.00 4.95
4373 5450 2.954318 CCAGCATAGAAAATGAGGGGTG 59.046 50.000 0.00 0.00 0.00 4.61
4374 5451 2.360165 CAGCATAGAAAATGAGGGGTGC 59.640 50.000 0.00 0.00 0.00 5.01
4375 5452 2.243221 AGCATAGAAAATGAGGGGTGCT 59.757 45.455 0.00 0.00 36.91 4.40
4376 5453 2.620585 GCATAGAAAATGAGGGGTGCTC 59.379 50.000 0.00 0.00 0.00 4.26
4377 5454 3.686691 GCATAGAAAATGAGGGGTGCTCT 60.687 47.826 0.00 0.00 0.00 4.09
4378 5455 2.797177 AGAAAATGAGGGGTGCTCTC 57.203 50.000 0.00 0.00 0.00 3.20
4379 5456 1.283321 AGAAAATGAGGGGTGCTCTCC 59.717 52.381 0.00 0.00 0.00 3.71
4380 5457 0.035056 AAAATGAGGGGTGCTCTCCG 60.035 55.000 0.00 0.00 0.00 4.63
4381 5458 1.915078 AAATGAGGGGTGCTCTCCGG 61.915 60.000 0.00 0.00 0.00 5.14
4403 5480 2.093764 CAGAGGTGCTTGAGGGTCTTAG 60.094 54.545 0.00 0.00 0.00 2.18
4429 5506 6.071952 ACCATACAACAACCTAAAGCATCTTG 60.072 38.462 0.00 0.00 0.00 3.02
4451 5528 9.552695 TCTTGAGATATCTGGATATAATGGTGT 57.447 33.333 10.74 0.00 34.36 4.16
4461 5538 6.390504 TGGATATAATGGTGTTACCTCTCCT 58.609 40.000 0.00 0.00 39.58 3.69
4566 5661 4.156739 AGGCTTCCGCTTCTTAGAAAATTG 59.843 41.667 0.00 0.00 36.09 2.32
4586 5681 7.396540 AATTGAAGTTAAGAGGTATGCCAAG 57.603 36.000 1.54 0.00 37.19 3.61
4588 5683 6.313519 TGAAGTTAAGAGGTATGCCAAGAT 57.686 37.500 1.54 0.00 37.19 2.40
4624 5719 3.118445 AGTTCCTTCATTAGAGGAGCTGC 60.118 47.826 8.45 0.00 40.84 5.25
4633 5728 5.819379 TCATTAGAGGAGCTGCTGTTAATTG 59.181 40.000 14.48 10.91 0.00 2.32
4721 5816 7.653311 GGTTCTGAAAATTAAGAATTGCACTGT 59.347 33.333 0.00 0.00 35.03 3.55
4730 5825 4.623932 AGAATTGCACTGTACTGAAGGA 57.376 40.909 6.77 0.00 0.00 3.36
4772 5867 6.704310 ACAGCCATGAATTTAAAATTGAGCT 58.296 32.000 0.00 0.00 0.00 4.09
4834 5929 4.074970 CAACTGTCCTCTTTTGCTGGTAT 58.925 43.478 0.00 0.00 0.00 2.73
4869 5964 6.702329 ACCATCTTCAAGTACTGTTTCTAGG 58.298 40.000 0.00 0.00 0.00 3.02
4885 5980 3.038280 TCTAGGATTTCCATGAGCGGAA 58.962 45.455 0.00 0.00 43.43 4.30
4966 6067 5.532664 TCCTGAGATGTCTGATTCTGATG 57.467 43.478 0.00 0.00 0.00 3.07
4976 6077 8.794335 ATGTCTGATTCTGATGATGAATATGG 57.206 34.615 0.00 0.00 34.67 2.74
5004 6108 4.319549 GGTGAGGATCGTTTTGACAAGTTC 60.320 45.833 0.00 0.00 38.61 3.01
5013 6117 7.962964 TCGTTTTGACAAGTTCTCTGATAAT 57.037 32.000 0.00 0.00 0.00 1.28
5016 6120 9.140286 CGTTTTGACAAGTTCTCTGATAATCTA 57.860 33.333 0.00 0.00 0.00 1.98
5068 6172 4.290985 TCCATAATCCAAGGTTCCTGACAA 59.709 41.667 0.00 0.00 0.00 3.18
5075 6179 3.066760 CCAAGGTTCCTGACAAAGTTGAC 59.933 47.826 0.00 0.00 0.00 3.18
5080 6184 6.126409 AGGTTCCTGACAAAGTTGACAATAA 58.874 36.000 0.00 0.00 32.89 1.40
5149 6253 7.332182 GTCAACTTGTATCCTTAAAGAGACTGG 59.668 40.741 0.90 0.00 32.28 4.00
5218 6322 8.355169 CAGACCATACCCATGAAGATTTATTTG 58.645 37.037 0.00 0.00 33.67 2.32
5228 6332 9.674824 CCATGAAGATTTATTTGAAGCTGATAC 57.325 33.333 0.00 0.00 0.00 2.24
5323 6427 0.391661 AACGTGGCAGTGGCTATCTG 60.392 55.000 18.53 5.57 40.87 2.90
5331 6435 3.070159 GGCAGTGGCTATCTGTGATTCTA 59.930 47.826 9.90 0.00 40.87 2.10
5359 6463 1.448985 GCCAGCACTAACGGAATTGA 58.551 50.000 0.00 0.00 0.00 2.57
5365 6469 6.616947 CCAGCACTAACGGAATTGAATTTAA 58.383 36.000 0.00 0.00 0.00 1.52
5567 6671 1.676014 GGAAGAGTTGGTCATCCGTGG 60.676 57.143 0.00 0.00 33.41 4.94
5608 6712 2.467826 GGCTCGCAATCACTCAGGC 61.468 63.158 0.00 0.00 0.00 4.85
5624 6728 2.482374 GCAGTTGCGACTCCATGC 59.518 61.111 2.72 1.55 32.54 4.06
5625 6729 2.327343 GCAGTTGCGACTCCATGCA 61.327 57.895 2.72 0.00 39.81 3.96
5631 6735 2.758089 GCGACTCCATGCAAGCCAG 61.758 63.158 0.00 0.00 0.00 4.85
5654 6758 6.536582 CAGTATTTGGAATCTCTACACCTGTG 59.463 42.308 0.00 0.00 0.00 3.66
5686 6790 3.445096 GGCACTGCAAGAGTTGGATATTT 59.555 43.478 2.82 0.00 37.43 1.40
5691 6795 4.272489 TGCAAGAGTTGGATATTTGGAGG 58.728 43.478 0.00 0.00 0.00 4.30
5695 6799 4.848357 AGAGTTGGATATTTGGAGGTGTG 58.152 43.478 0.00 0.00 0.00 3.82
5714 6818 4.156922 GTGTGCATCACTCTCTACACTAGT 59.843 45.833 10.87 0.00 43.13 2.57
5756 6860 2.935238 GCCTCAGGCGTTTGATTCTACA 60.935 50.000 0.00 0.00 39.62 2.74
5847 6951 7.361542 CGACTGGAATTTCTTGAAATCAGTGAT 60.362 37.037 23.20 0.00 0.00 3.06
5918 7022 4.729746 GCGGCTAGTTATTAGTGGTTTTGC 60.730 45.833 0.00 0.00 0.00 3.68
5923 7027 7.308951 GGCTAGTTATTAGTGGTTTTGCAGAAA 60.309 37.037 0.00 0.00 0.00 2.52
6002 7106 1.471684 CCTCACAGAGCTCCAATTTGC 59.528 52.381 10.93 0.00 0.00 3.68
6003 7107 2.156917 CTCACAGAGCTCCAATTTGCA 58.843 47.619 10.93 0.00 0.00 4.08
6011 7115 6.039047 ACAGAGCTCCAATTTGCATATTACAG 59.961 38.462 10.93 3.14 0.00 2.74
6014 7118 4.797275 GCTCCAATTTGCATATTACAGGCC 60.797 45.833 1.85 0.00 31.20 5.19
6040 7144 1.516110 ATATCTTCCTGCAGGCCTGT 58.484 50.000 32.81 15.75 34.44 4.00
6221 7325 6.742718 GTCAAAATTGACGACCAATATGTGAG 59.257 38.462 10.26 0.00 46.80 3.51
6243 7348 3.871594 GCTGATTACTCGTGGCTTGTTAT 59.128 43.478 0.00 0.00 0.00 1.89
6250 7356 0.590682 CGTGGCTTGTTATGCACACA 59.409 50.000 0.00 0.00 33.98 3.72
6325 7848 6.736123 ACCATAGATCGTGTTATGTACAGAC 58.264 40.000 0.33 3.45 37.45 3.51
6380 7905 2.237392 ACTGACCTTATGCCAGTTCCTC 59.763 50.000 0.00 0.00 37.86 3.71
6391 7916 1.202651 CCAGTTCCTCGACAGGTTTGT 60.203 52.381 0.00 0.00 41.28 2.83
6415 7940 3.784178 TCACTTCAGAACCTCATCCTCT 58.216 45.455 0.00 0.00 0.00 3.69
6422 7947 4.533707 TCAGAACCTCATCCTCTTGTGATT 59.466 41.667 0.00 0.00 0.00 2.57
6472 8045 6.476378 ACCAGTCTGTTTAGCTGTTTGATAT 58.524 36.000 0.00 0.00 0.00 1.63
6629 8208 7.125811 ACTTCCTTGATACACTAGCCAGAAATA 59.874 37.037 0.00 0.00 0.00 1.40
6644 8223 3.555139 CAGAAATACTCTGCAGCTACAGC 59.445 47.826 9.47 0.00 45.11 4.40
6819 8452 4.142337 ACGTTCCAAGGAATTCGTTTTGTT 60.142 37.500 10.59 0.00 34.66 2.83
6820 8453 4.801516 CGTTCCAAGGAATTCGTTTTGTTT 59.198 37.500 10.59 0.00 36.45 2.83
6821 8454 5.289917 CGTTCCAAGGAATTCGTTTTGTTTT 59.710 36.000 10.59 0.00 36.45 2.43
6822 8455 6.474364 GTTCCAAGGAATTCGTTTTGTTTTG 58.526 36.000 10.59 0.00 36.45 2.44
6823 8456 5.725362 TCCAAGGAATTCGTTTTGTTTTGT 58.275 33.333 10.59 0.00 0.00 2.83
6873 8506 1.016627 TGTTGTGCTTCAGACAGTGC 58.983 50.000 0.00 0.00 0.00 4.40
6921 8554 7.531317 TCCAGAGCTATAGAGGAACTAAATCT 58.469 38.462 3.21 0.00 41.55 2.40
6934 8567 6.934645 AGGAACTAAATCTTGTTGAATCGACA 59.065 34.615 0.00 0.00 36.02 4.35
6935 8568 7.015877 GGAACTAAATCTTGTTGAATCGACAC 58.984 38.462 2.20 0.00 0.00 3.67
6951 8584 4.166523 TCGACACGATTCTGAATTGAGTC 58.833 43.478 25.78 25.78 38.65 3.36
6956 8589 4.156862 CGATTCTGAATTGAGTCGTTCG 57.843 45.455 11.48 1.34 39.97 3.95
6957 8590 3.540359 CGATTCTGAATTGAGTCGTTCGC 60.540 47.826 11.48 0.00 39.97 4.70
6961 8594 1.272490 TGAATTGAGTCGTTCGCTCCT 59.728 47.619 11.58 0.00 32.31 3.69
6965 8598 0.944311 TGAGTCGTTCGCTCCTTTGC 60.944 55.000 11.58 0.00 32.31 3.68
6992 8625 1.203994 GTTACAGGCTGAAGGCGACTA 59.796 52.381 23.66 0.00 46.23 2.59
7015 8648 1.202770 CGTCTCCAAGTTCCACCCTTT 60.203 52.381 0.00 0.00 0.00 3.11
7023 8656 2.666317 AGTTCCACCCTTTGGTTTCAG 58.334 47.619 0.00 0.00 44.75 3.02
7072 9907 6.946340 TCCAGAGTTTAGATAATGCAGTTCA 58.054 36.000 0.00 0.00 0.00 3.18
7074 9909 8.049117 TCCAGAGTTTAGATAATGCAGTTCAAT 58.951 33.333 0.00 0.00 0.00 2.57
7126 9961 5.396484 CACTTTAATGCAGTTCTGGACATG 58.604 41.667 0.00 0.00 0.00 3.21
7149 9984 5.587443 TGATGCAGATTATGTCCAGAGTTTG 59.413 40.000 0.00 0.00 0.00 2.93
7151 9986 3.944015 GCAGATTATGTCCAGAGTTTGCT 59.056 43.478 0.00 0.00 0.00 3.91
7193 10028 2.828520 TCCATCCAGAGAGTTGTCAGTC 59.171 50.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.136141 CAGATGAAGCTTGTCGTGCAC 60.136 52.381 2.10 6.82 0.00 4.57
19 20 1.150827 CAGATGAAGCTTGTCGTGCA 58.849 50.000 2.10 0.00 0.00 4.57
21 22 2.156504 GTGTCAGATGAAGCTTGTCGTG 59.843 50.000 2.10 3.13 0.00 4.35
25 26 2.551459 GCAAGTGTCAGATGAAGCTTGT 59.449 45.455 2.10 0.00 38.81 3.16
30 31 1.808945 GGGTGCAAGTGTCAGATGAAG 59.191 52.381 0.00 0.00 0.00 3.02
37 38 0.813610 CGTTGAGGGTGCAAGTGTCA 60.814 55.000 0.00 0.00 0.00 3.58
39 40 1.525995 CCGTTGAGGGTGCAAGTGT 60.526 57.895 0.00 0.00 35.97 3.55
56 57 0.729116 CTGATCCACATGCAACGTCC 59.271 55.000 0.00 0.00 0.00 4.79
76 77 0.317160 AAACACTCACATCGAGCCGA 59.683 50.000 0.00 0.00 46.63 5.54
125 126 8.318412 AGGGGGTAAAAATGAAATTCATTGTAC 58.682 33.333 20.40 21.45 45.57 2.90
138 139 5.875224 ACATGGAAAAAGGGGGTAAAAATG 58.125 37.500 0.00 0.00 0.00 2.32
141 142 5.191921 ACAAACATGGAAAAAGGGGGTAAAA 59.808 36.000 0.00 0.00 0.00 1.52
165 166 9.073475 ACTGCTAAATAAGGTAAAATGTTGTCA 57.927 29.630 0.00 0.00 0.00 3.58
209 213 2.293955 ACCGAAACGTGGGTAAAATTGG 59.706 45.455 4.54 0.00 33.36 3.16
211 215 2.287728 GCACCGAAACGTGGGTAAAATT 60.288 45.455 5.95 0.00 33.36 1.82
213 217 0.662085 GCACCGAAACGTGGGTAAAA 59.338 50.000 5.95 0.00 33.36 1.52
214 218 0.179051 AGCACCGAAACGTGGGTAAA 60.179 50.000 5.95 0.00 33.36 2.01
228 232 4.487412 GCAGGCGCAATCAGCACC 62.487 66.667 10.83 0.00 46.03 5.01
229 233 4.487412 GGCAGGCGCAATCAGCAC 62.487 66.667 10.83 0.00 46.13 4.40
246 250 2.034558 AGAAAACAAACCAGCCGATGTG 59.965 45.455 0.00 0.00 0.00 3.21
247 251 2.293399 GAGAAAACAAACCAGCCGATGT 59.707 45.455 0.00 0.00 0.00 3.06
280 284 1.589716 CCGGTTCTACTCGGTTCGGT 61.590 60.000 0.00 0.00 41.23 4.69
285 289 2.694760 GCGTCCGGTTCTACTCGGT 61.695 63.158 0.00 0.00 45.79 4.69
317 321 2.663196 GGTGCGGCTCTACAGGTT 59.337 61.111 0.00 0.00 0.00 3.50
321 325 4.735132 GTGCGGTGCGGCTCTACA 62.735 66.667 0.00 0.00 0.00 2.74
339 343 4.680237 TGCGGCTCGACCAGGTTG 62.680 66.667 0.00 0.00 39.03 3.77
340 344 4.681978 GTGCGGCTCGACCAGGTT 62.682 66.667 0.00 0.00 39.03 3.50
488 496 1.898574 CCAACGAAGCTGCCCTGTT 60.899 57.895 0.00 0.00 0.00 3.16
489 497 2.281761 CCAACGAAGCTGCCCTGT 60.282 61.111 0.00 0.00 0.00 4.00
490 498 3.058160 CCCAACGAAGCTGCCCTG 61.058 66.667 0.00 0.00 0.00 4.45
491 499 4.351054 CCCCAACGAAGCTGCCCT 62.351 66.667 0.00 0.00 0.00 5.19
493 501 4.344865 TCCCCCAACGAAGCTGCC 62.345 66.667 0.00 0.00 0.00 4.85
494 502 3.056328 GTCCCCCAACGAAGCTGC 61.056 66.667 0.00 0.00 0.00 5.25
495 503 2.742372 CGTCCCCCAACGAAGCTG 60.742 66.667 0.00 0.00 45.37 4.24
496 504 4.016706 CCGTCCCCCAACGAAGCT 62.017 66.667 0.00 0.00 45.37 3.74
498 506 4.323477 TGCCGTCCCCCAACGAAG 62.323 66.667 0.00 0.00 45.37 3.79
499 507 4.629523 GTGCCGTCCCCCAACGAA 62.630 66.667 0.00 0.00 45.37 3.85
522 530 3.755628 TTCCCCTCCTTCGACGCG 61.756 66.667 3.53 3.53 0.00 6.01
523 531 2.125633 GTTCCCCTCCTTCGACGC 60.126 66.667 0.00 0.00 0.00 5.19
524 532 2.577593 GGTTCCCCTCCTTCGACG 59.422 66.667 0.00 0.00 0.00 5.12
525 533 1.980772 TCGGTTCCCCTCCTTCGAC 60.981 63.158 0.00 0.00 0.00 4.20
526 534 1.980772 GTCGGTTCCCCTCCTTCGA 60.981 63.158 0.00 0.00 0.00 3.71
527 535 2.577593 GTCGGTTCCCCTCCTTCG 59.422 66.667 0.00 0.00 0.00 3.79
528 536 2.577593 CGTCGGTTCCCCTCCTTC 59.422 66.667 0.00 0.00 0.00 3.46
529 537 3.703127 GCGTCGGTTCCCCTCCTT 61.703 66.667 0.00 0.00 0.00 3.36
551 559 4.147322 CACCCGACGCACGCATTC 62.147 66.667 0.00 0.00 41.07 2.67
552 560 3.950794 ATCACCCGACGCACGCATT 62.951 57.895 0.00 0.00 41.07 3.56
553 561 4.451150 ATCACCCGACGCACGCAT 62.451 61.111 0.00 0.00 41.07 4.73
556 564 4.735132 ACCATCACCCGACGCACG 62.735 66.667 0.00 0.00 42.18 5.34
557 565 3.118454 CACCATCACCCGACGCAC 61.118 66.667 0.00 0.00 0.00 5.34
558 566 4.386951 CCACCATCACCCGACGCA 62.387 66.667 0.00 0.00 0.00 5.24
559 567 4.388499 ACCACCATCACCCGACGC 62.388 66.667 0.00 0.00 0.00 5.19
560 568 2.434185 CACCACCATCACCCGACG 60.434 66.667 0.00 0.00 0.00 5.12
561 569 2.046314 CCACCACCATCACCCGAC 60.046 66.667 0.00 0.00 0.00 4.79
562 570 2.528127 ACCACCACCATCACCCGA 60.528 61.111 0.00 0.00 0.00 5.14
563 571 2.359850 CACCACCACCATCACCCG 60.360 66.667 0.00 0.00 0.00 5.28
564 572 2.035626 CCACCACCACCATCACCC 59.964 66.667 0.00 0.00 0.00 4.61
565 573 1.603455 CACCACCACCACCATCACC 60.603 63.158 0.00 0.00 0.00 4.02
566 574 2.268076 GCACCACCACCACCATCAC 61.268 63.158 0.00 0.00 0.00 3.06
567 575 2.115052 GCACCACCACCACCATCA 59.885 61.111 0.00 0.00 0.00 3.07
568 576 1.973281 CAGCACCACCACCACCATC 60.973 63.158 0.00 0.00 0.00 3.51
569 577 2.115910 CAGCACCACCACCACCAT 59.884 61.111 0.00 0.00 0.00 3.55
570 578 4.892965 GCAGCACCACCACCACCA 62.893 66.667 0.00 0.00 0.00 4.17
571 579 4.586235 AGCAGCACCACCACCACC 62.586 66.667 0.00 0.00 0.00 4.61
572 580 3.289834 CAGCAGCACCACCACCAC 61.290 66.667 0.00 0.00 0.00 4.16
614 622 1.303155 GCAAGCAGCCCTTCTCAGT 60.303 57.895 0.00 0.00 37.23 3.41
616 624 2.359107 CGCAAGCAGCCCTTCTCA 60.359 61.111 0.00 0.00 41.38 3.27
676 684 4.524318 CCGTACCCGCCGCTCATT 62.524 66.667 0.00 0.00 0.00 2.57
688 696 3.688159 AGTCGCCACCACCCGTAC 61.688 66.667 0.00 0.00 0.00 3.67
703 711 4.479993 GCATGCTCCCTCGCCAGT 62.480 66.667 11.37 0.00 0.00 4.00
708 716 4.147449 TGACCGCATGCTCCCTCG 62.147 66.667 17.13 0.00 0.00 4.63
709 717 2.202987 CTGACCGCATGCTCCCTC 60.203 66.667 17.13 5.07 0.00 4.30
713 721 3.558411 GACGCTGACCGCATGCTC 61.558 66.667 17.13 8.12 41.76 4.26
714 722 3.881952 TTGACGCTGACCGCATGCT 62.882 57.895 17.13 0.00 41.76 3.79
715 723 3.372676 CTTGACGCTGACCGCATGC 62.373 63.158 7.91 7.91 41.76 4.06
717 725 0.807667 GATCTTGACGCTGACCGCAT 60.808 55.000 0.00 0.00 41.76 4.73
718 726 1.446099 GATCTTGACGCTGACCGCA 60.446 57.895 0.00 0.00 41.76 5.69
719 727 2.167861 GGATCTTGACGCTGACCGC 61.168 63.158 0.00 0.00 41.76 5.68
720 728 1.874019 CGGATCTTGACGCTGACCG 60.874 63.158 0.00 0.00 44.21 4.79
721 729 1.519455 CCGGATCTTGACGCTGACC 60.519 63.158 0.00 0.00 0.00 4.02
722 730 1.078759 CACCGGATCTTGACGCTGAC 61.079 60.000 9.46 0.00 0.00 3.51
723 731 1.215382 CACCGGATCTTGACGCTGA 59.785 57.895 9.46 0.00 0.00 4.26
724 732 1.811266 CCACCGGATCTTGACGCTG 60.811 63.158 9.46 0.00 0.00 5.18
725 733 2.579201 CCACCGGATCTTGACGCT 59.421 61.111 9.46 0.00 0.00 5.07
726 734 2.511600 CCCACCGGATCTTGACGC 60.512 66.667 9.46 0.00 0.00 5.19
727 735 1.153628 GACCCACCGGATCTTGACG 60.154 63.158 9.46 0.00 0.00 4.35
728 736 1.153628 CGACCCACCGGATCTTGAC 60.154 63.158 9.46 0.00 0.00 3.18
729 737 3.014085 GCGACCCACCGGATCTTGA 62.014 63.158 9.46 0.00 0.00 3.02
730 738 2.511600 GCGACCCACCGGATCTTG 60.512 66.667 9.46 0.00 0.00 3.02
731 739 3.782443 GGCGACCCACCGGATCTT 61.782 66.667 9.46 0.00 0.00 2.40
814 822 4.760047 CAGGACCAGCCGAACCCG 62.760 72.222 0.00 0.00 43.43 5.28
816 824 3.628646 ATGCAGGACCAGCCGAACC 62.629 63.158 6.39 0.00 43.43 3.62
817 825 2.045926 ATGCAGGACCAGCCGAAC 60.046 61.111 6.39 0.00 43.43 3.95
818 826 2.268920 GATGCAGGACCAGCCGAA 59.731 61.111 6.39 0.00 43.43 4.30
819 827 4.147449 CGATGCAGGACCAGCCGA 62.147 66.667 6.39 0.00 43.43 5.54
901 909 1.572085 CTGCTGTTTGCTCGGGTCTG 61.572 60.000 0.00 0.00 43.37 3.51
902 910 1.302033 CTGCTGTTTGCTCGGGTCT 60.302 57.895 0.00 0.00 43.37 3.85
903 911 1.301716 TCTGCTGTTTGCTCGGGTC 60.302 57.895 0.00 0.00 43.37 4.46
905 913 1.294659 GAGTCTGCTGTTTGCTCGGG 61.295 60.000 0.00 0.00 43.37 5.14
916 924 2.494073 CGGTAAGGAAGAAGAGTCTGCT 59.506 50.000 0.00 0.00 33.05 4.24
964 972 2.098842 GAGCCACTCAATGATCGCGC 62.099 60.000 0.00 0.00 0.00 6.86
975 983 0.590195 CAGCTGTTTGTGAGCCACTC 59.410 55.000 5.25 0.00 37.12 3.51
1011 1019 1.448893 GATCGCCGGCACAAGGTAA 60.449 57.895 28.98 0.48 0.00 2.85
1029 1037 1.300388 GGTTTGCAGCAGCCACAAG 60.300 57.895 11.88 0.00 41.13 3.16
1038 1046 3.056313 GCCGAGGATGGTTTGCAGC 62.056 63.158 0.00 0.00 0.00 5.25
1039 1047 1.675310 TGCCGAGGATGGTTTGCAG 60.675 57.895 0.00 0.00 0.00 4.41
1069 1077 0.179100 ATCCACGAATCCAGCTCACG 60.179 55.000 0.00 0.00 0.00 4.35
1071 1079 0.465705 GGATCCACGAATCCAGCTCA 59.534 55.000 6.95 0.00 44.04 4.26
1099 1107 1.450312 CGGTGTCATCCTGAAGCCC 60.450 63.158 0.00 0.00 0.00 5.19
1107 1115 0.895530 TGAGGTTCTCGGTGTCATCC 59.104 55.000 0.00 0.00 32.35 3.51
1115 1123 0.171455 CTCGGACTTGAGGTTCTCGG 59.829 60.000 0.00 0.00 32.35 4.63
1117 1125 0.892063 AGCTCGGACTTGAGGTTCTC 59.108 55.000 0.00 0.00 43.82 2.87
1152 1160 4.467084 TTCGCATCGGAGGCCACC 62.467 66.667 9.57 9.57 0.00 4.61
1159 1167 3.154473 CCTCCCCTTCGCATCGGA 61.154 66.667 0.00 0.00 0.00 4.55
1188 1196 1.891060 GAGATTTATCCAGCCGCGCG 61.891 60.000 25.67 25.67 0.00 6.86
1199 1207 4.855715 TTGAGATCGGCGAGAGATTTAT 57.144 40.909 17.22 0.00 0.00 1.40
1202 1210 3.452474 CTTTTGAGATCGGCGAGAGATT 58.548 45.455 17.22 0.00 0.00 2.40
1275 1283 3.423154 CCTTCGACTTGGTGCCGC 61.423 66.667 0.00 0.00 0.00 6.53
1313 1321 9.023967 CAGGAATTTGAAATACAATCGATTTCC 57.976 33.333 8.21 8.33 40.91 3.13
1412 2059 1.339631 TGTTGGCGACTGAAATAGGGG 60.340 52.381 6.41 0.00 0.00 4.79
1437 2091 1.913419 AGCGGGTCTTGGGAAATAGAA 59.087 47.619 0.00 0.00 0.00 2.10
1440 2094 0.393808 GCAGCGGGTCTTGGGAAATA 60.394 55.000 0.00 0.00 0.00 1.40
1443 2097 4.344865 GGCAGCGGGTCTTGGGAA 62.345 66.667 0.00 0.00 0.00 3.97
1486 2148 1.007336 GTAACACCGTCAGAGGCGTG 61.007 60.000 9.08 9.08 33.69 5.34
1552 2217 1.374758 GGTGGAGCAGAGGTCGTTG 60.375 63.158 0.00 0.00 0.00 4.10
1563 2228 3.775654 CCGAGGTGGAGGTGGAGC 61.776 72.222 0.00 0.00 42.00 4.70
1564 2229 0.613853 TTACCGAGGTGGAGGTGGAG 60.614 60.000 4.80 0.00 41.51 3.86
1565 2230 0.178926 TTTACCGAGGTGGAGGTGGA 60.179 55.000 4.80 0.00 41.51 4.02
1566 2231 0.688487 TTTTACCGAGGTGGAGGTGG 59.312 55.000 4.80 0.00 41.51 4.61
1567 2232 2.236395 AGATTTTACCGAGGTGGAGGTG 59.764 50.000 4.80 0.00 41.51 4.00
1568 2233 2.547990 AGATTTTACCGAGGTGGAGGT 58.452 47.619 4.80 0.00 42.00 3.85
1569 2234 3.629142 AAGATTTTACCGAGGTGGAGG 57.371 47.619 4.80 0.00 42.00 4.30
1573 2238 4.760204 ACCAGAAAAGATTTTACCGAGGTG 59.240 41.667 4.80 0.00 0.00 4.00
1944 2613 6.631238 CGTGTTTTGAGTTTCAAATCGTACAT 59.369 34.615 5.20 0.00 44.75 2.29
1945 2614 5.960683 CGTGTTTTGAGTTTCAAATCGTACA 59.039 36.000 5.20 4.42 44.75 2.90
1946 2615 6.138081 GTCGTGTTTTGAGTTTCAAATCGTAC 59.862 38.462 5.20 2.16 44.75 3.67
1947 2616 6.186785 GTCGTGTTTTGAGTTTCAAATCGTA 58.813 36.000 5.20 0.00 44.75 3.43
1948 2617 5.025826 GTCGTGTTTTGAGTTTCAAATCGT 58.974 37.500 5.20 0.00 44.75 3.73
1949 2618 4.142364 CGTCGTGTTTTGAGTTTCAAATCG 59.858 41.667 5.20 10.03 44.75 3.34
1950 2619 4.086277 GCGTCGTGTTTTGAGTTTCAAATC 60.086 41.667 5.20 5.60 44.75 2.17
1951 2620 3.789224 GCGTCGTGTTTTGAGTTTCAAAT 59.211 39.130 5.20 0.00 44.75 2.32
1955 2624 2.098870 GTGCGTCGTGTTTTGAGTTTC 58.901 47.619 0.00 0.00 0.00 2.78
1966 2635 2.285256 GCAGAATAAGATGTGCGTCGTG 60.285 50.000 0.00 0.00 0.00 4.35
1986 2688 6.803807 AGCTTTCAAAGAATAAAACGAGATGC 59.196 34.615 0.00 0.00 0.00 3.91
2010 3011 6.926280 TTGTTACGCAGATGCAAATAAAAG 57.074 33.333 5.55 0.00 42.21 2.27
2011 3012 6.529829 GGATTGTTACGCAGATGCAAATAAAA 59.470 34.615 5.55 0.00 42.21 1.52
2016 3025 2.163412 GGGATTGTTACGCAGATGCAAA 59.837 45.455 5.55 0.00 42.21 3.68
2017 3026 1.742831 GGGATTGTTACGCAGATGCAA 59.257 47.619 5.55 0.00 42.21 4.08
2027 3036 6.980051 ATTAGAACGACAAGGGATTGTTAC 57.020 37.500 0.00 0.00 34.90 2.50
2055 3066 6.656693 TGTGAGAAGAAGAAAAATGGAGGATC 59.343 38.462 0.00 0.00 0.00 3.36
2057 3068 5.940617 TGTGAGAAGAAGAAAAATGGAGGA 58.059 37.500 0.00 0.00 0.00 3.71
2060 3071 5.132502 TGCTGTGAGAAGAAGAAAAATGGA 58.867 37.500 0.00 0.00 0.00 3.41
2063 3074 8.675504 CATCTATGCTGTGAGAAGAAGAAAAAT 58.324 33.333 0.00 0.00 0.00 1.82
2090 3101 0.389426 GGTGGCATTTTCAGCAGCAG 60.389 55.000 0.00 0.00 33.34 4.24
2106 3117 0.322098 TAATGACAGCAACGGGGGTG 60.322 55.000 6.28 6.28 41.84 4.61
2130 3141 5.995282 CGTTCCTATTATTGGTATGCTGGAA 59.005 40.000 0.00 0.00 0.00 3.53
2144 3155 5.607939 TGGCTCTTGATTCGTTCCTATTA 57.392 39.130 0.00 0.00 0.00 0.98
2145 3156 4.487714 TGGCTCTTGATTCGTTCCTATT 57.512 40.909 0.00 0.00 0.00 1.73
2148 3159 2.224523 TGTTGGCTCTTGATTCGTTCCT 60.225 45.455 0.00 0.00 0.00 3.36
2226 3237 3.810373 CAACTGACGTGTTATTTCCTGC 58.190 45.455 0.00 0.00 0.00 4.85
2238 3249 1.442769 GGATGTCATGCAACTGACGT 58.557 50.000 13.69 13.69 46.89 4.34
2273 3284 8.372459 AGTATAACCCGAGCATGTTTATATTCA 58.628 33.333 0.00 0.00 0.00 2.57
2275 3286 8.594550 AGAGTATAACCCGAGCATGTTTATATT 58.405 33.333 0.00 0.00 0.00 1.28
2278 3289 6.223852 CAGAGTATAACCCGAGCATGTTTAT 58.776 40.000 0.00 0.00 0.00 1.40
2280 3291 4.442706 CAGAGTATAACCCGAGCATGTTT 58.557 43.478 0.00 0.00 0.00 2.83
2289 3300 2.093658 ACTTGCACCAGAGTATAACCCG 60.094 50.000 0.00 0.00 0.00 5.28
2296 3307 3.388024 AGAACTGAACTTGCACCAGAGTA 59.612 43.478 10.41 0.00 0.00 2.59
2406 3423 4.885907 CCAGCAGTCATCACCTTTATGATT 59.114 41.667 0.00 0.00 37.20 2.57
2626 3646 2.171003 GTCAAGGCTGCATAACCCTTT 58.829 47.619 0.50 0.00 36.86 3.11
2821 3841 4.182339 GGTTCAGTCGTTCCTATCCTTTC 58.818 47.826 0.00 0.00 0.00 2.62
2877 3897 5.240623 TGCTCGTTCTTTGAACAATAACCAT 59.759 36.000 10.46 0.00 0.00 3.55
2894 3914 3.057969 TCTCATCACCAAATGCTCGTT 57.942 42.857 0.00 0.00 0.00 3.85
2954 3974 3.498397 GCCTTTTAGCTCGCATGCTATTA 59.502 43.478 17.13 0.09 43.92 0.98
2962 3982 1.241315 GGGTTGCCTTTTAGCTCGCA 61.241 55.000 0.00 0.00 0.00 5.10
2965 3985 3.181486 GCTAATGGGTTGCCTTTTAGCTC 60.181 47.826 17.21 0.00 39.01 4.09
3041 4061 7.123697 TCCAGTCTTCGTCCTTGAGAATATTAA 59.876 37.037 0.00 0.00 0.00 1.40
3045 4065 4.341487 TCCAGTCTTCGTCCTTGAGAATA 58.659 43.478 0.00 0.00 0.00 1.75
3063 4083 0.251742 TGAGCCCCACCAATTTCCAG 60.252 55.000 0.00 0.00 0.00 3.86
3073 4093 4.416738 GCCTCCACTGAGCCCCAC 62.417 72.222 0.00 0.00 37.29 4.61
3108 4128 3.133003 ACGGCAACTGATCATAGCTAAGT 59.867 43.478 0.00 0.00 0.00 2.24
3192 4212 2.268298 CAAATACGGACCAACTCCTCG 58.732 52.381 0.00 0.00 36.80 4.63
3240 4260 6.543831 CCTCTAATTTCTTACTTGGATGGTGG 59.456 42.308 0.00 0.00 0.00 4.61
3241 4261 7.338710 TCCTCTAATTTCTTACTTGGATGGTG 58.661 38.462 0.00 0.00 0.00 4.17
3322 4342 6.986817 TGACTGACTAGAAAGGAGTCTTTTTG 59.013 38.462 1.33 0.00 42.72 2.44
3330 4353 7.969536 TGAATTTTGACTGACTAGAAAGGAG 57.030 36.000 0.00 0.00 0.00 3.69
3339 4362 8.169977 ACACAACATATGAATTTTGACTGACT 57.830 30.769 10.38 0.00 0.00 3.41
3341 4364 8.291740 CAGACACAACATATGAATTTTGACTGA 58.708 33.333 10.38 0.00 31.87 3.41
3342 4365 7.539710 CCAGACACAACATATGAATTTTGACTG 59.460 37.037 10.38 12.18 31.12 3.51
3376 4429 6.283544 TGAAGCCATCTTTGCAAAATCATA 57.716 33.333 13.84 0.00 31.48 2.15
3395 4448 0.947660 TGCGCAGTCAGCTCTTGAAG 60.948 55.000 5.66 0.00 42.61 3.02
3411 4464 6.147656 TGCATTGTAGACCATCTATAATTGCG 59.852 38.462 15.83 6.27 38.28 4.85
3471 4524 6.618287 TGCTGCTGATATTTGTTGTATACC 57.382 37.500 0.00 0.00 0.00 2.73
3498 4563 4.510571 AGTTGTTACTCCAAGACACGTTT 58.489 39.130 0.00 0.00 0.00 3.60
3519 4584 9.180678 ACTGTATTTCGCAAATGTTCTTTAAAG 57.819 29.630 9.04 9.04 32.38 1.85
3529 4594 5.676744 CGGATGTAACTGTATTTCGCAAATG 59.323 40.000 4.89 0.00 32.38 2.32
3620 4688 4.389890 TCATGTGCCTTTTGGAATATGC 57.610 40.909 0.00 0.00 44.03 3.14
3657 4725 9.630098 TTTTCTTCTTGAAATGTTGCAGATATC 57.370 29.630 0.00 0.00 43.34 1.63
3688 4756 9.663904 GTGCATGAGCGAATTAAAATCTTTATA 57.336 29.630 0.00 0.00 46.23 0.98
3689 4757 8.190122 TGTGCATGAGCGAATTAAAATCTTTAT 58.810 29.630 0.00 0.00 46.23 1.40
3690 4758 7.534282 TGTGCATGAGCGAATTAAAATCTTTA 58.466 30.769 0.00 0.00 46.23 1.85
3691 4759 6.389091 TGTGCATGAGCGAATTAAAATCTTT 58.611 32.000 0.00 0.00 46.23 2.52
3692 4760 5.953183 TGTGCATGAGCGAATTAAAATCTT 58.047 33.333 0.00 0.00 46.23 2.40
3693 4761 5.124457 ACTGTGCATGAGCGAATTAAAATCT 59.876 36.000 0.00 0.00 46.23 2.40
3694 4762 5.335127 ACTGTGCATGAGCGAATTAAAATC 58.665 37.500 0.00 0.00 46.23 2.17
3695 4763 5.314923 ACTGTGCATGAGCGAATTAAAAT 57.685 34.783 0.00 0.00 46.23 1.82
3705 4773 4.437930 GGATTTACAGAACTGTGCATGAGC 60.438 45.833 16.37 2.39 44.63 4.26
3713 4781 7.726033 AGATGAGTAGGATTTACAGAACTGT 57.274 36.000 12.10 12.10 46.87 3.55
3744 4812 3.007635 CTCCTTGGCCGTTAGTTTTAGG 58.992 50.000 0.00 0.00 0.00 2.69
3753 4821 3.790416 TTGCAGCTCCTTGGCCGTT 62.790 57.895 0.00 0.00 0.00 4.44
3825 4893 6.727394 AGGTACATTAAGGTAATTTGAGCCA 58.273 36.000 0.79 0.00 0.00 4.75
3834 4902 8.257602 TCATGCTATGAGGTACATTAAGGTAA 57.742 34.615 0.79 0.00 40.07 2.85
3835 4903 7.849322 TCATGCTATGAGGTACATTAAGGTA 57.151 36.000 0.00 0.00 40.07 3.08
3836 4904 6.747414 TCATGCTATGAGGTACATTAAGGT 57.253 37.500 0.00 0.00 40.07 3.50
3853 4924 6.327934 GCAAACTGACAAGATTATTCATGCT 58.672 36.000 0.00 0.00 0.00 3.79
3888 4959 4.427312 CAATTCTAGCAATGGAAACTGCC 58.573 43.478 0.00 0.00 39.47 4.85
3893 4964 9.829975 CCAACTTGCCAATTCTAGCAATGGAAA 62.830 40.741 15.59 0.00 45.63 3.13
3915 4992 1.202698 AGTGTCTGAAGTGAGGCCAAC 60.203 52.381 5.01 2.27 0.00 3.77
3919 4996 3.728845 TGTTTAGTGTCTGAAGTGAGGC 58.271 45.455 0.00 0.00 0.00 4.70
3954 5031 3.565764 ATCCGAAAGCCATCAGAATCA 57.434 42.857 0.00 0.00 0.00 2.57
3961 5038 6.706270 TGAAGTTCTATAATCCGAAAGCCATC 59.294 38.462 4.17 0.00 0.00 3.51
4008 5085 8.084684 ACATTTTGAAGTTGAGAAATCCTAAGC 58.915 33.333 0.00 0.00 0.00 3.09
4043 5120 3.732849 CCCCACAAGCCTCCTCCC 61.733 72.222 0.00 0.00 0.00 4.30
4086 5163 3.873805 GGACAAGTGCAGCTTTTCC 57.126 52.632 14.36 14.36 44.07 3.13
4158 5235 5.220548 CGAGTCAGATTCATTGTTGTCATCC 60.221 44.000 0.00 0.00 0.00 3.51
4166 5243 4.081476 TGTCATCCGAGTCAGATTCATTGT 60.081 41.667 0.00 0.00 0.00 2.71
4177 5254 2.299993 TCATTGCTGTCATCCGAGTC 57.700 50.000 0.00 0.00 0.00 3.36
4178 5255 2.768253 TTCATTGCTGTCATCCGAGT 57.232 45.000 0.00 0.00 0.00 4.18
4179 5256 3.604065 CATTCATTGCTGTCATCCGAG 57.396 47.619 0.00 0.00 0.00 4.63
4199 5276 1.859703 CAGAGCTCATGACATTCTCGC 59.140 52.381 17.77 0.00 0.00 5.03
4200 5277 3.433513 TCAGAGCTCATGACATTCTCG 57.566 47.619 17.77 0.00 0.00 4.04
4231 5308 2.093235 AGCACTCCTCTGTTTCTATGCC 60.093 50.000 0.00 0.00 32.19 4.40
4268 5345 4.227300 TGGTAGAACTTGCAAGACCCATAT 59.773 41.667 32.50 12.17 0.00 1.78
4269 5346 3.585289 TGGTAGAACTTGCAAGACCCATA 59.415 43.478 32.50 13.96 0.00 2.74
4270 5347 2.375174 TGGTAGAACTTGCAAGACCCAT 59.625 45.455 32.50 14.89 0.00 4.00
4271 5348 1.771854 TGGTAGAACTTGCAAGACCCA 59.228 47.619 32.50 23.18 0.00 4.51
4272 5349 2.427506 CTGGTAGAACTTGCAAGACCC 58.572 52.381 32.50 21.19 0.00 4.46
4273 5350 1.807142 GCTGGTAGAACTTGCAAGACC 59.193 52.381 32.50 26.61 0.00 3.85
4274 5351 2.494059 TGCTGGTAGAACTTGCAAGAC 58.506 47.619 32.50 23.07 0.00 3.01
4275 5352 2.928801 TGCTGGTAGAACTTGCAAGA 57.071 45.000 32.50 7.52 0.00 3.02
4276 5353 2.094894 CGATGCTGGTAGAACTTGCAAG 59.905 50.000 24.84 24.84 37.20 4.01
4277 5354 2.076100 CGATGCTGGTAGAACTTGCAA 58.924 47.619 0.00 0.00 37.20 4.08
4278 5355 1.001974 ACGATGCTGGTAGAACTTGCA 59.998 47.619 0.00 0.00 38.05 4.08
4279 5356 1.394917 CACGATGCTGGTAGAACTTGC 59.605 52.381 0.00 0.00 0.00 4.01
4280 5357 2.002586 CCACGATGCTGGTAGAACTTG 58.997 52.381 0.00 0.00 0.00 3.16
4281 5358 1.899814 TCCACGATGCTGGTAGAACTT 59.100 47.619 0.00 0.00 32.50 2.66
4282 5359 1.557099 TCCACGATGCTGGTAGAACT 58.443 50.000 0.00 0.00 32.50 3.01
4283 5360 2.380084 TTCCACGATGCTGGTAGAAC 57.620 50.000 0.00 0.00 32.50 3.01
4284 5361 3.270027 CATTTCCACGATGCTGGTAGAA 58.730 45.455 0.00 0.00 32.50 2.10
4285 5362 2.419990 CCATTTCCACGATGCTGGTAGA 60.420 50.000 0.00 0.00 32.50 2.59
4286 5363 1.942657 CCATTTCCACGATGCTGGTAG 59.057 52.381 0.00 0.00 32.50 3.18
4287 5364 1.557371 TCCATTTCCACGATGCTGGTA 59.443 47.619 0.00 0.00 32.50 3.25
4288 5365 0.327924 TCCATTTCCACGATGCTGGT 59.672 50.000 0.00 0.00 32.50 4.00
4289 5366 1.019673 CTCCATTTCCACGATGCTGG 58.980 55.000 0.00 0.00 0.00 4.85
4290 5367 1.019673 CCTCCATTTCCACGATGCTG 58.980 55.000 0.00 0.00 0.00 4.41
4291 5368 0.911769 TCCTCCATTTCCACGATGCT 59.088 50.000 0.00 0.00 0.00 3.79
4292 5369 1.401905 GTTCCTCCATTTCCACGATGC 59.598 52.381 0.00 0.00 0.00 3.91
4293 5370 1.665679 CGTTCCTCCATTTCCACGATG 59.334 52.381 0.00 0.00 0.00 3.84
4294 5371 2.012051 GCGTTCCTCCATTTCCACGAT 61.012 52.381 0.00 0.00 0.00 3.73
4295 5372 0.672401 GCGTTCCTCCATTTCCACGA 60.672 55.000 0.00 0.00 0.00 4.35
4296 5373 0.673644 AGCGTTCCTCCATTTCCACG 60.674 55.000 0.00 0.00 0.00 4.94
4297 5374 1.200020 CAAGCGTTCCTCCATTTCCAC 59.800 52.381 0.00 0.00 0.00 4.02
4298 5375 1.533625 CAAGCGTTCCTCCATTTCCA 58.466 50.000 0.00 0.00 0.00 3.53
4299 5376 0.171231 GCAAGCGTTCCTCCATTTCC 59.829 55.000 0.00 0.00 0.00 3.13
4300 5377 1.168714 AGCAAGCGTTCCTCCATTTC 58.831 50.000 0.00 0.00 0.00 2.17
4301 5378 2.488153 GTTAGCAAGCGTTCCTCCATTT 59.512 45.455 0.00 0.00 0.00 2.32
4302 5379 2.084546 GTTAGCAAGCGTTCCTCCATT 58.915 47.619 0.00 0.00 0.00 3.16
4303 5380 1.003118 TGTTAGCAAGCGTTCCTCCAT 59.997 47.619 0.00 0.00 0.00 3.41
4304 5381 0.394938 TGTTAGCAAGCGTTCCTCCA 59.605 50.000 0.00 0.00 0.00 3.86
4305 5382 0.796927 GTGTTAGCAAGCGTTCCTCC 59.203 55.000 0.00 0.00 0.00 4.30
4306 5383 1.461127 CTGTGTTAGCAAGCGTTCCTC 59.539 52.381 0.00 0.00 0.00 3.71
4307 5384 1.070134 TCTGTGTTAGCAAGCGTTCCT 59.930 47.619 0.00 0.00 0.00 3.36
4308 5385 1.508632 TCTGTGTTAGCAAGCGTTCC 58.491 50.000 0.00 0.00 0.00 3.62
4309 5386 2.736721 TCATCTGTGTTAGCAAGCGTTC 59.263 45.455 0.00 0.00 0.00 3.95
4310 5387 2.766313 TCATCTGTGTTAGCAAGCGTT 58.234 42.857 0.00 0.00 0.00 4.84
4311 5388 2.455674 TCATCTGTGTTAGCAAGCGT 57.544 45.000 0.00 0.00 0.00 5.07
4312 5389 3.371898 TCATTCATCTGTGTTAGCAAGCG 59.628 43.478 0.00 0.00 0.00 4.68
4313 5390 4.201891 CCTCATTCATCTGTGTTAGCAAGC 60.202 45.833 0.00 0.00 0.00 4.01
4314 5391 4.940046 ACCTCATTCATCTGTGTTAGCAAG 59.060 41.667 0.00 0.00 0.00 4.01
4315 5392 4.910195 ACCTCATTCATCTGTGTTAGCAA 58.090 39.130 0.00 0.00 0.00 3.91
4316 5393 4.558226 ACCTCATTCATCTGTGTTAGCA 57.442 40.909 0.00 0.00 0.00 3.49
4317 5394 5.181748 AGAACCTCATTCATCTGTGTTAGC 58.818 41.667 0.00 0.00 40.09 3.09
4318 5395 6.875726 TCAAGAACCTCATTCATCTGTGTTAG 59.124 38.462 0.00 0.00 40.09 2.34
4319 5396 6.768483 TCAAGAACCTCATTCATCTGTGTTA 58.232 36.000 0.00 0.00 40.09 2.41
4320 5397 5.624159 TCAAGAACCTCATTCATCTGTGTT 58.376 37.500 0.00 0.00 40.09 3.32
4321 5398 5.233083 TCAAGAACCTCATTCATCTGTGT 57.767 39.130 0.00 0.00 40.09 3.72
4322 5399 5.936054 GTTCAAGAACCTCATTCATCTGTG 58.064 41.667 1.51 0.00 40.09 3.66
4336 5413 3.740115 TGCTGGTAGAAGGTTCAAGAAC 58.260 45.455 4.39 4.39 40.45 3.01
4337 5414 4.640771 ATGCTGGTAGAAGGTTCAAGAA 57.359 40.909 0.00 0.00 0.00 2.52
4338 5415 5.023452 TCTATGCTGGTAGAAGGTTCAAGA 58.977 41.667 0.00 0.00 0.00 3.02
4339 5416 5.344743 TCTATGCTGGTAGAAGGTTCAAG 57.655 43.478 0.00 0.00 0.00 3.02
4340 5417 5.755409 TTCTATGCTGGTAGAAGGTTCAA 57.245 39.130 3.66 0.00 36.15 2.69
4341 5418 5.755409 TTTCTATGCTGGTAGAAGGTTCA 57.245 39.130 6.81 0.00 40.64 3.18
4342 5419 6.823689 TCATTTTCTATGCTGGTAGAAGGTTC 59.176 38.462 6.81 0.00 40.64 3.62
4343 5420 6.721318 TCATTTTCTATGCTGGTAGAAGGTT 58.279 36.000 6.81 0.00 40.64 3.50
4344 5421 6.313519 TCATTTTCTATGCTGGTAGAAGGT 57.686 37.500 6.81 0.38 40.64 3.50
4345 5422 5.762218 CCTCATTTTCTATGCTGGTAGAAGG 59.238 44.000 6.81 2.67 40.64 3.46
4346 5423 5.762218 CCCTCATTTTCTATGCTGGTAGAAG 59.238 44.000 6.81 0.00 40.64 2.85
4347 5424 5.397899 CCCCTCATTTTCTATGCTGGTAGAA 60.398 44.000 3.66 3.66 38.55 2.10
4348 5425 4.103153 CCCCTCATTTTCTATGCTGGTAGA 59.897 45.833 0.00 0.00 0.00 2.59
4349 5426 4.141390 ACCCCTCATTTTCTATGCTGGTAG 60.141 45.833 0.00 0.00 0.00 3.18
4350 5427 3.785887 ACCCCTCATTTTCTATGCTGGTA 59.214 43.478 0.00 0.00 0.00 3.25
4351 5428 2.582636 ACCCCTCATTTTCTATGCTGGT 59.417 45.455 0.00 0.00 0.00 4.00
4352 5429 2.954318 CACCCCTCATTTTCTATGCTGG 59.046 50.000 0.00 0.00 0.00 4.85
4353 5430 2.360165 GCACCCCTCATTTTCTATGCTG 59.640 50.000 0.00 0.00 0.00 4.41
4354 5431 2.243221 AGCACCCCTCATTTTCTATGCT 59.757 45.455 0.00 0.00 37.34 3.79
4355 5432 2.620585 GAGCACCCCTCATTTTCTATGC 59.379 50.000 0.00 0.00 40.45 3.14
4356 5433 4.133078 GAGAGCACCCCTCATTTTCTATG 58.867 47.826 0.00 0.00 43.31 2.23
4357 5434 3.137360 GGAGAGCACCCCTCATTTTCTAT 59.863 47.826 0.00 0.00 43.31 1.98
4358 5435 2.505819 GGAGAGCACCCCTCATTTTCTA 59.494 50.000 0.00 0.00 43.31 2.10
4359 5436 1.283321 GGAGAGCACCCCTCATTTTCT 59.717 52.381 0.00 0.00 43.31 2.52
4360 5437 1.756430 GGAGAGCACCCCTCATTTTC 58.244 55.000 0.00 0.00 43.31 2.29
4361 5438 0.035056 CGGAGAGCACCCCTCATTTT 60.035 55.000 0.00 0.00 43.31 1.82
4362 5439 1.604378 CGGAGAGCACCCCTCATTT 59.396 57.895 0.00 0.00 43.31 2.32
4363 5440 2.370445 CCGGAGAGCACCCCTCATT 61.370 63.158 0.00 0.00 43.31 2.57
4364 5441 2.765807 CCGGAGAGCACCCCTCAT 60.766 66.667 0.00 0.00 43.31 2.90
4369 5446 4.154347 CTCTGCCGGAGAGCACCC 62.154 72.222 5.05 0.00 42.03 4.61
4370 5447 4.154347 CCTCTGCCGGAGAGCACC 62.154 72.222 19.65 0.00 46.36 5.01
4371 5448 3.386237 ACCTCTGCCGGAGAGCAC 61.386 66.667 19.65 0.00 46.36 4.40
4372 5449 3.385384 CACCTCTGCCGGAGAGCA 61.385 66.667 19.65 4.90 46.36 4.26
4373 5450 4.828925 GCACCTCTGCCGGAGAGC 62.829 72.222 19.65 2.08 46.36 4.09
4374 5451 2.654079 AAGCACCTCTGCCGGAGAG 61.654 63.158 18.65 18.65 45.53 3.20
4375 5452 2.604686 AAGCACCTCTGCCGGAGA 60.605 61.111 5.05 4.34 45.53 3.71
4376 5453 2.435586 CAAGCACCTCTGCCGGAG 60.436 66.667 5.05 0.00 45.53 4.63
4377 5454 2.922503 TCAAGCACCTCTGCCGGA 60.923 61.111 5.05 0.00 45.53 5.14
4378 5455 2.435586 CTCAAGCACCTCTGCCGG 60.436 66.667 0.00 0.00 45.53 6.13
4379 5456 2.435586 CCTCAAGCACCTCTGCCG 60.436 66.667 0.00 0.00 45.53 5.69
4380 5457 2.045536 CCCTCAAGCACCTCTGCC 60.046 66.667 0.00 0.00 45.53 4.85
4381 5458 1.376553 GACCCTCAAGCACCTCTGC 60.377 63.158 0.00 0.00 44.63 4.26
4382 5459 0.689623 AAGACCCTCAAGCACCTCTG 59.310 55.000 0.00 0.00 0.00 3.35
4383 5460 2.183679 CTAAGACCCTCAAGCACCTCT 58.816 52.381 0.00 0.00 0.00 3.69
4384 5461 2.093921 GTCTAAGACCCTCAAGCACCTC 60.094 54.545 0.00 0.00 0.00 3.85
4385 5462 1.903183 GTCTAAGACCCTCAAGCACCT 59.097 52.381 0.00 0.00 0.00 4.00
4386 5463 1.066071 GGTCTAAGACCCTCAAGCACC 60.066 57.143 0.00 0.00 46.19 5.01
4387 5464 2.388310 GGTCTAAGACCCTCAAGCAC 57.612 55.000 0.00 0.00 46.19 4.40
4403 5480 5.648092 AGATGCTTTAGGTTGTTGTATGGTC 59.352 40.000 0.00 0.00 0.00 4.02
4408 5485 6.530120 TCTCAAGATGCTTTAGGTTGTTGTA 58.470 36.000 0.00 0.00 0.00 2.41
4410 5487 5.947228 TCTCAAGATGCTTTAGGTTGTTG 57.053 39.130 0.00 0.00 0.00 3.33
4443 5520 5.045869 CCAAGAAGGAGAGGTAACACCATTA 60.046 44.000 0.00 0.00 39.64 1.90
4451 5528 2.290323 GCAAGCCAAGAAGGAGAGGTAA 60.290 50.000 0.00 0.00 41.22 2.85
4566 5661 7.988028 ACTAATCTTGGCATACCTCTTAACTTC 59.012 37.037 0.00 0.00 36.63 3.01
4624 5719 6.890558 CCAACTTTGGCATTTCAATTAACAG 58.109 36.000 0.00 0.00 42.21 3.16
4721 5816 5.997746 CCAAACAGATCAAACTCCTTCAGTA 59.002 40.000 0.00 0.00 32.30 2.74
4772 5867 0.179032 ACGTGGCAACCATGACTTCA 60.179 50.000 12.68 0.00 42.73 3.02
4834 5929 4.104102 ACTTGAAGATGGTAAAGGGTGTGA 59.896 41.667 0.00 0.00 0.00 3.58
4966 6067 5.296151 TCCTCACCAGAACCATATTCATC 57.704 43.478 0.00 0.00 0.00 2.92
4976 6077 3.186613 GTCAAAACGATCCTCACCAGAAC 59.813 47.826 0.00 0.00 0.00 3.01
5016 6120 8.416329 GCCAAAATATTTCCATCTAACACTGAT 58.584 33.333 0.10 0.00 0.00 2.90
5068 6172 4.483476 GGCAACGACTTATTGTCAACTT 57.517 40.909 0.00 0.00 45.60 2.66
5144 6248 3.260884 TGGACAGTCCACTATTTCCAGTC 59.739 47.826 19.21 0.00 42.67 3.51
5149 6253 4.020128 AGGTTCTGGACAGTCCACTATTTC 60.020 45.833 19.21 6.51 42.67 2.17
5168 6272 5.182487 GTGGAACATTGAAACCAAAAGGTT 58.818 37.500 0.00 0.00 44.52 3.50
5171 6275 4.764172 TGGTGGAACATTGAAACCAAAAG 58.236 39.130 0.00 0.00 44.52 2.27
5218 6322 5.824624 TCAAATCTTCATGGGTATCAGCTTC 59.175 40.000 0.00 0.00 0.00 3.86
5228 6332 2.159282 GCAGCTGTCAAATCTTCATGGG 60.159 50.000 16.64 0.00 0.00 4.00
5323 6427 1.737236 TGGCGCATGTTGTAGAATCAC 59.263 47.619 10.83 0.00 0.00 3.06
5359 6463 5.011023 CCAGTTCTGGGCAGTTCTTTAAATT 59.989 40.000 10.71 0.00 0.00 1.82
5365 6469 1.140312 TCCAGTTCTGGGCAGTTCTT 58.860 50.000 17.37 0.00 0.00 2.52
5497 6601 6.902416 AGGGATTTCAATTTTGGGACATGATA 59.098 34.615 0.00 0.00 39.30 2.15
5498 6602 5.727766 AGGGATTTCAATTTTGGGACATGAT 59.272 36.000 0.00 0.00 39.30 2.45
5499 6603 5.092968 AGGGATTTCAATTTTGGGACATGA 58.907 37.500 0.00 0.00 39.30 3.07
5545 6649 1.909302 ACGGATGACCAACTCTTCCAT 59.091 47.619 0.00 0.00 41.49 3.41
5581 6685 0.536006 GATTGCGAGCCCCTTAGCAT 60.536 55.000 0.00 0.00 39.50 3.79
5587 6691 2.249413 CTGAGTGATTGCGAGCCCCT 62.249 60.000 0.00 0.00 0.00 4.79
5588 6692 1.817099 CTGAGTGATTGCGAGCCCC 60.817 63.158 0.00 0.00 0.00 5.80
5608 6712 0.167470 CTTGCATGGAGTCGCAACTG 59.833 55.000 0.00 0.00 42.93 3.16
5624 6728 6.037610 GTGTAGAGATTCCAAATACTGGCTTG 59.962 42.308 0.00 0.00 45.98 4.01
5625 6729 6.116126 GTGTAGAGATTCCAAATACTGGCTT 58.884 40.000 0.00 0.00 45.98 4.35
5631 6735 5.294552 GCACAGGTGTAGAGATTCCAAATAC 59.705 44.000 0.91 0.00 0.00 1.89
5671 6775 5.124457 CACACCTCCAAATATCCAACTCTTG 59.876 44.000 0.00 0.00 0.00 3.02
5695 6799 3.067461 CCCACTAGTGTAGAGAGTGATGC 59.933 52.174 21.18 0.00 42.65 3.91
5750 6854 3.354948 AGCCACAGCAATCATGTAGAA 57.645 42.857 0.00 0.00 43.56 2.10
5756 6860 1.191535 ATGCAAGCCACAGCAATCAT 58.808 45.000 0.00 0.00 44.88 2.45
5847 6951 2.813754 CGATGTGGCAAGGAAAGAGAAA 59.186 45.455 0.00 0.00 0.00 2.52
5923 7027 3.378427 GTCAGTCCTTCTGCTGTTGTTTT 59.622 43.478 0.00 0.00 43.32 2.43
5943 7047 2.958355 CCCTCTCTCTTCCTCATCTGTC 59.042 54.545 0.00 0.00 0.00 3.51
6002 7106 9.160496 GAAGATATTTGAGAGGCCTGTAATATG 57.840 37.037 18.17 0.00 0.00 1.78
6003 7107 8.325046 GGAAGATATTTGAGAGGCCTGTAATAT 58.675 37.037 12.00 13.86 0.00 1.28
6011 7115 3.145286 GCAGGAAGATATTTGAGAGGCC 58.855 50.000 0.00 0.00 0.00 5.19
6014 7118 3.814283 GCCTGCAGGAAGATATTTGAGAG 59.186 47.826 37.21 3.90 37.39 3.20
6040 7144 0.039180 TGGAGGGAGCGAAGTCTGTA 59.961 55.000 0.00 0.00 0.00 2.74
6221 7325 1.726853 ACAAGCCACGAGTAATCAGC 58.273 50.000 0.00 0.00 0.00 4.26
6264 7370 7.247728 TCAAAAGCAGTACAAGTTTACAACTG 58.752 34.615 0.00 0.00 41.91 3.16
6272 7378 7.450903 AGTATACCTCAAAAGCAGTACAAGTT 58.549 34.615 0.00 0.00 0.00 2.66
6346 7870 9.780186 GGCATAAGGTCAGTTTTCTATACTTAT 57.220 33.333 0.00 0.00 33.01 1.73
6380 7905 4.094294 TCTGAAGTGAAAACAAACCTGTCG 59.906 41.667 0.00 0.00 33.45 4.35
6391 7916 5.072329 AGAGGATGAGGTTCTGAAGTGAAAA 59.928 40.000 0.00 0.00 0.00 2.29
6415 7940 3.257469 TGGCAGCAAAACAAATCACAA 57.743 38.095 0.00 0.00 0.00 3.33
6422 7947 4.558178 CTGTTGATATGGCAGCAAAACAA 58.442 39.130 0.00 0.00 33.53 2.83
6472 8045 5.427378 TGTCAGTTCACAAGACTCAATGAA 58.573 37.500 0.00 0.00 33.56 2.57
6629 8208 1.735386 CATTGCTGTAGCTGCAGAGT 58.265 50.000 32.74 15.59 39.29 3.24
6643 8222 3.832276 TCCGAAATACAAAGTGCATTGC 58.168 40.909 0.46 0.46 33.52 3.56
6644 8223 5.460646 AGTTCCGAAATACAAAGTGCATTG 58.539 37.500 0.00 0.00 36.37 2.82
6780 8413 8.670135 CCTTGGAACGTACATATTACAATGAAA 58.330 33.333 0.00 0.00 28.34 2.69
6793 8426 3.389925 ACGAATTCCTTGGAACGTACA 57.610 42.857 13.81 0.00 32.42 2.90
6798 8431 6.091577 ACAAAACAAAACGAATTCCTTGGAAC 59.908 34.615 4.00 0.00 0.00 3.62
6819 8452 4.187694 GGCATCACAAAAGAAACCACAAA 58.812 39.130 0.00 0.00 0.00 2.83
6820 8453 3.196469 TGGCATCACAAAAGAAACCACAA 59.804 39.130 0.00 0.00 0.00 3.33
6821 8454 2.762887 TGGCATCACAAAAGAAACCACA 59.237 40.909 0.00 0.00 0.00 4.17
6822 8455 3.123050 GTGGCATCACAAAAGAAACCAC 58.877 45.455 0.00 0.00 43.13 4.16
6823 8456 3.451141 GTGGCATCACAAAAGAAACCA 57.549 42.857 0.00 0.00 43.13 3.67
6873 8506 3.564511 CAAAACTGGCTGAATAACCACG 58.435 45.455 0.00 0.00 0.00 4.94
6905 8538 9.319143 CGATTCAACAAGATTTAGTTCCTCTAT 57.681 33.333 0.00 0.00 0.00 1.98
6935 8568 3.540359 GCGAACGACTCAATTCAGAATCG 60.540 47.826 0.00 0.00 42.35 3.34
6956 8589 0.596082 TAACAAAGGCGCAAAGGAGC 59.404 50.000 10.83 0.00 39.33 4.70
6957 8590 1.606668 TGTAACAAAGGCGCAAAGGAG 59.393 47.619 10.83 0.00 0.00 3.69
6992 8625 0.321653 GGTGGAACTTGGAGACGCAT 60.322 55.000 0.00 0.00 36.74 4.73
7015 8648 6.212589 TGACCTACTATCATGAACTGAAACCA 59.787 38.462 0.00 0.00 37.44 3.67
7049 9884 7.615582 TTGAACTGCATTATCTAAACTCTGG 57.384 36.000 0.00 0.00 0.00 3.86
7080 9915 4.753233 CAACTGACTAACTCTCTGGATGG 58.247 47.826 0.00 0.00 0.00 3.51
7126 9961 5.505324 GCAAACTCTGGACATAATCTGCATC 60.505 44.000 0.00 0.00 0.00 3.91
7149 9984 6.651225 GGAATCCATATACACAGAAGGTAAGC 59.349 42.308 0.00 0.00 0.00 3.09
7151 9986 7.684317 TGGAATCCATATACACAGAAGGTAA 57.316 36.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.