Multiple sequence alignment - TraesCS2A01G109800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G109800 chr2A 100.000 2692 0 0 1 2692 61487106 61489797 0.000000e+00 4972.0
1 TraesCS2A01G109800 chr2A 93.694 111 6 1 128 237 377135618 377135508 5.960000e-37 165.0
2 TraesCS2A01G109800 chr2A 82.500 80 13 1 2614 2692 411111115 411111036 4.810000e-08 69.4
3 TraesCS2A01G109800 chr2B 83.919 2276 206 72 224 2415 95795474 95797673 0.000000e+00 2028.0
4 TraesCS2A01G109800 chr2B 80.537 298 37 11 234 516 95794520 95794811 2.720000e-50 209.0
5 TraesCS2A01G109800 chr2B 81.143 175 13 6 2462 2616 95797684 95797858 3.640000e-24 122.0
6 TraesCS2A01G109800 chr2D 83.071 1589 146 66 224 1770 61020829 61022336 0.000000e+00 1330.0
7 TraesCS2A01G109800 chr2D 89.362 752 58 8 1886 2617 61022777 61023526 0.000000e+00 926.0
8 TraesCS2A01G109800 chr5D 88.038 209 23 2 1314 1521 412960757 412960964 2.070000e-61 246.0
9 TraesCS2A01G109800 chr5A 88.038 209 23 2 1314 1521 525026091 525026298 2.070000e-61 246.0
10 TraesCS2A01G109800 chr5B 87.500 208 24 2 1314 1520 497504662 497504868 3.460000e-59 239.0
11 TraesCS2A01G109800 chr5B 83.544 79 12 1 2615 2692 590183762 590183684 3.720000e-09 73.1
12 TraesCS2A01G109800 chr5B 91.837 49 4 0 2614 2662 61635 61587 4.810000e-08 69.4
13 TraesCS2A01G109800 chr5B 85.965 57 8 0 2614 2670 72083886 72083942 8.050000e-06 62.1
14 TraesCS2A01G109800 chr4B 87.283 173 22 0 1350 1522 585822540 585822368 5.880000e-47 198.0
15 TraesCS2A01G109800 chr4B 87.805 164 20 0 2137 2300 362149612 362149449 2.740000e-45 193.0
16 TraesCS2A01G109800 chr4B 85.795 176 24 1 1350 1525 585963968 585963794 4.580000e-43 185.0
17 TraesCS2A01G109800 chr4D 87.805 164 20 0 2137 2300 294352115 294351952 2.740000e-45 193.0
18 TraesCS2A01G109800 chr4D 86.127 173 24 0 1350 1522 467636291 467636119 1.270000e-43 187.0
19 TraesCS2A01G109800 chr4D 94.393 107 6 0 129 235 179707534 179707428 5.960000e-37 165.0
20 TraesCS2A01G109800 chr4D 91.453 117 8 1 114 230 108302662 108302776 2.770000e-35 159.0
21 TraesCS2A01G109800 chr4A 86.705 173 23 0 1347 1519 3351564 3351736 2.740000e-45 193.0
22 TraesCS2A01G109800 chr4A 86.228 167 22 1 2134 2300 215223892 215224057 2.130000e-41 180.0
23 TraesCS2A01G109800 chr4A 93.578 109 7 0 128 236 500770033 500769925 2.140000e-36 163.0
24 TraesCS2A01G109800 chr3D 97.115 104 3 0 131 234 79532552 79532655 2.750000e-40 176.0
25 TraesCS2A01G109800 chr6D 97.059 102 2 1 130 231 144591463 144591563 1.280000e-38 171.0
26 TraesCS2A01G109800 chr6D 88.462 52 6 0 2611 2662 343460964 343461015 2.240000e-06 63.9
27 TraesCS2A01G109800 chr6D 88.462 52 6 0 2611 2662 422737412 422737463 2.240000e-06 63.9
28 TraesCS2A01G109800 chr7B 94.393 107 6 0 131 237 713292129 713292023 5.960000e-37 165.0
29 TraesCS2A01G109800 chr6B 94.393 107 6 0 129 235 409381812 409381918 5.960000e-37 165.0
30 TraesCS2A01G109800 chr1B 94.444 108 4 2 131 237 677585901 677585795 5.960000e-37 165.0
31 TraesCS2A01G109800 chr3A 91.837 49 4 0 2614 2662 103430522 103430474 4.810000e-08 69.4
32 TraesCS2A01G109800 chrUn 89.796 49 5 0 2614 2662 261272640 261272592 2.240000e-06 63.9
33 TraesCS2A01G109800 chrUn 89.796 49 5 0 2614 2662 278230678 278230630 2.240000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G109800 chr2A 61487106 61489797 2691 False 4972.000000 4972 100.000000 1 2692 1 chr2A.!!$F1 2691
1 TraesCS2A01G109800 chr2B 95794520 95797858 3338 False 786.333333 2028 81.866333 224 2616 3 chr2B.!!$F1 2392
2 TraesCS2A01G109800 chr2D 61020829 61023526 2697 False 1128.000000 1330 86.216500 224 2617 2 chr2D.!!$F1 2393

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
680 1438 0.033228 GGTGAGCAGATGATCTCGGG 59.967 60.0 0.0 0.0 32.2 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 2947 0.034059 CCACGAGGATGGCTGGTATC 59.966 60.0 0.0 0.0 36.89 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.622833 TGCATTGTAGATGTGGATATTGTG 57.377 37.500 0.00 0.00 0.00 3.33
28 29 6.432162 GCATTGTAGATGTGGATATTGTGGAT 59.568 38.462 0.00 0.00 0.00 3.41
29 30 7.607607 GCATTGTAGATGTGGATATTGTGGATA 59.392 37.037 0.00 0.00 0.00 2.59
30 31 9.676861 CATTGTAGATGTGGATATTGTGGATAT 57.323 33.333 0.00 0.00 33.58 1.63
35 36 8.641498 AGATGTGGATATTGTGGATATTTTCC 57.359 34.615 0.00 0.00 45.69 3.13
49 50 5.684184 GGATATTTTCCAATACGGTTTTCGC 59.316 40.000 0.00 0.00 44.74 4.70
50 51 4.776795 ATTTTCCAATACGGTTTTCGCT 57.223 36.364 0.00 0.00 43.89 4.93
51 52 5.883503 ATTTTCCAATACGGTTTTCGCTA 57.116 34.783 0.00 0.00 43.89 4.26
52 53 4.932268 TTTCCAATACGGTTTTCGCTAG 57.068 40.909 0.00 0.00 43.89 3.42
54 55 3.777478 TCCAATACGGTTTTCGCTAGAG 58.223 45.455 0.00 0.00 43.89 2.43
56 57 4.082081 TCCAATACGGTTTTCGCTAGAGAA 60.082 41.667 4.64 4.64 43.89 2.87
57 58 4.628333 CCAATACGGTTTTCGCTAGAGAAA 59.372 41.667 16.53 16.53 43.89 2.52
119 120 6.287107 TGCAGAGTAAAAAGAAAAGAGACG 57.713 37.500 0.00 0.00 0.00 4.18
120 121 5.236478 TGCAGAGTAAAAAGAAAAGAGACGG 59.764 40.000 0.00 0.00 0.00 4.79
121 122 5.236695 GCAGAGTAAAAAGAAAAGAGACGGT 59.763 40.000 0.00 0.00 0.00 4.83
122 123 6.423001 GCAGAGTAAAAAGAAAAGAGACGGTA 59.577 38.462 0.00 0.00 0.00 4.02
123 124 7.569043 GCAGAGTAAAAAGAAAAGAGACGGTAC 60.569 40.741 0.00 0.00 0.00 3.34
124 125 7.652507 CAGAGTAAAAAGAAAAGAGACGGTACT 59.347 37.037 0.00 0.00 0.00 2.73
125 126 7.652507 AGAGTAAAAAGAAAAGAGACGGTACTG 59.347 37.037 0.00 0.00 0.00 2.74
127 128 6.846325 AAAAAGAAAAGAGACGGTACTGAG 57.154 37.500 9.17 0.00 0.00 3.35
128 129 5.532664 AAAGAAAAGAGACGGTACTGAGT 57.467 39.130 9.17 0.00 0.00 3.41
129 130 5.532664 AAGAAAAGAGACGGTACTGAGTT 57.467 39.130 9.17 0.00 0.00 3.01
131 132 4.341520 AGAAAAGAGACGGTACTGAGTTGT 59.658 41.667 9.17 0.00 0.00 3.32
132 133 5.533903 AGAAAAGAGACGGTACTGAGTTGTA 59.466 40.000 9.17 0.00 0.00 2.41
133 134 4.762956 AAGAGACGGTACTGAGTTGTAC 57.237 45.455 9.17 0.00 41.31 2.90
134 135 4.018484 AGAGACGGTACTGAGTTGTACT 57.982 45.455 9.17 0.00 41.64 2.73
135 136 4.002316 AGAGACGGTACTGAGTTGTACTC 58.998 47.826 9.17 0.00 45.26 2.59
136 137 3.080319 AGACGGTACTGAGTTGTACTCC 58.920 50.000 9.17 0.00 44.44 3.85
138 139 2.224967 ACGGTACTGAGTTGTACTCCCT 60.225 50.000 9.17 0.00 44.44 4.20
139 140 2.422832 CGGTACTGAGTTGTACTCCCTC 59.577 54.545 0.00 0.00 44.44 4.30
141 142 1.546961 ACTGAGTTGTACTCCCTCCG 58.453 55.000 4.52 0.00 44.44 4.63
142 143 1.203025 ACTGAGTTGTACTCCCTCCGT 60.203 52.381 4.52 0.00 44.44 4.69
143 144 1.473278 CTGAGTTGTACTCCCTCCGTC 59.527 57.143 4.52 0.00 44.44 4.79
147 148 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
148 149 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
149 150 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
150 151 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
152 153 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
154 155 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
155 156 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
157 158 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
158 159 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
160 161 2.671396 CCGTCCCAAAATAAGTGACTCG 59.329 50.000 0.00 0.00 0.00 4.18
163 164 4.566987 GTCCCAAAATAAGTGACTCGACT 58.433 43.478 0.00 0.00 0.00 4.18
164 165 4.995487 GTCCCAAAATAAGTGACTCGACTT 59.005 41.667 0.00 0.00 39.54 3.01
165 166 5.469084 GTCCCAAAATAAGTGACTCGACTTT 59.531 40.000 0.00 0.00 37.38 2.66
167 168 5.238650 CCCAAAATAAGTGACTCGACTTTGT 59.761 40.000 0.00 0.00 37.38 2.83
168 169 6.425721 CCCAAAATAAGTGACTCGACTTTGTA 59.574 38.462 0.00 0.00 37.38 2.41
169 170 7.288672 CCAAAATAAGTGACTCGACTTTGTAC 58.711 38.462 0.00 0.00 37.38 2.90
171 172 9.188588 CAAAATAAGTGACTCGACTTTGTACTA 57.811 33.333 0.00 0.00 37.38 1.82
172 173 9.754382 AAAATAAGTGACTCGACTTTGTACTAA 57.246 29.630 0.00 0.00 37.38 2.24
173 174 8.739649 AATAAGTGACTCGACTTTGTACTAAC 57.260 34.615 0.00 0.00 37.38 2.34
174 175 6.388435 AAGTGACTCGACTTTGTACTAACT 57.612 37.500 0.00 0.00 31.92 2.24
176 177 6.803642 AGTGACTCGACTTTGTACTAACTTT 58.196 36.000 0.00 0.00 0.00 2.66
177 178 7.934457 AGTGACTCGACTTTGTACTAACTTTA 58.066 34.615 0.00 0.00 0.00 1.85
179 180 7.859875 GTGACTCGACTTTGTACTAACTTTAGT 59.140 37.037 6.85 6.85 45.39 2.24
180 181 9.056005 TGACTCGACTTTGTACTAACTTTAGTA 57.944 33.333 4.98 4.98 43.36 1.82
204 205 9.831737 GTATAAAGTTAGTACAAAGTCGAGTCA 57.168 33.333 0.00 0.00 0.00 3.41
205 206 8.739649 ATAAAGTTAGTACAAAGTCGAGTCAC 57.260 34.615 0.00 0.00 0.00 3.67
206 207 6.388435 AAGTTAGTACAAAGTCGAGTCACT 57.612 37.500 0.00 0.00 0.00 3.41
207 208 6.388435 AGTTAGTACAAAGTCGAGTCACTT 57.612 37.500 0.00 3.11 38.30 3.16
209 210 8.108551 AGTTAGTACAAAGTCGAGTCACTTAT 57.891 34.615 0.00 4.10 35.45 1.73
210 211 8.574737 AGTTAGTACAAAGTCGAGTCACTTATT 58.425 33.333 0.00 2.93 35.45 1.40
211 212 9.189723 GTTAGTACAAAGTCGAGTCACTTATTT 57.810 33.333 0.00 1.15 35.45 1.40
212 213 9.754382 TTAGTACAAAGTCGAGTCACTTATTTT 57.246 29.630 0.00 0.00 35.45 1.82
213 214 8.073355 AGTACAAAGTCGAGTCACTTATTTTG 57.927 34.615 0.00 7.24 35.45 2.44
215 216 5.238650 ACAAAGTCGAGTCACTTATTTTGGG 59.761 40.000 11.39 0.00 35.45 4.12
217 218 4.566987 AGTCGAGTCACTTATTTTGGGAC 58.433 43.478 0.00 0.00 0.00 4.46
218 219 3.367025 GTCGAGTCACTTATTTTGGGACG 59.633 47.826 0.00 0.00 33.84 4.79
220 221 3.615592 CGAGTCACTTATTTTGGGACGGA 60.616 47.826 0.00 0.00 33.84 4.69
221 222 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
222 223 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
236 968 3.567585 GGACGGAGGGAGTAGTACATAAC 59.432 52.174 2.52 0.00 0.00 1.89
239 971 2.295629 GGAGGGAGTAGTACATAACGCC 59.704 54.545 2.52 1.47 35.09 5.68
258 990 2.334838 CCTGCTTGCTGAAGAAAATGC 58.665 47.619 1.05 0.00 0.00 3.56
285 1017 2.852413 ACTTGCTCGAATGATAACGACG 59.148 45.455 0.00 0.00 34.82 5.12
289 1021 5.043189 TGCTCGAATGATAACGACGATAT 57.957 39.130 0.00 0.00 34.82 1.63
326 1058 4.531912 CGACGCGAGCTTAGCCGA 62.532 66.667 15.93 0.00 0.00 5.54
327 1059 2.202570 GACGCGAGCTTAGCCGAA 60.203 61.111 15.93 0.00 0.00 4.30
356 1090 0.763223 ACTCCGGGTCAGACAAAGGT 60.763 55.000 0.00 0.00 0.00 3.50
358 1092 1.003718 CCGGGTCAGACAAAGGTCC 60.004 63.158 2.17 0.00 45.48 4.46
359 1093 1.003718 CGGGTCAGACAAAGGTCCC 60.004 63.158 2.17 0.00 45.48 4.46
360 1094 1.003718 GGGTCAGACAAAGGTCCCG 60.004 63.158 2.17 0.00 45.48 5.14
361 1095 1.477685 GGGTCAGACAAAGGTCCCGA 61.478 60.000 2.17 0.00 45.48 5.14
362 1096 0.613777 GGTCAGACAAAGGTCCCGAT 59.386 55.000 2.17 0.00 45.48 4.18
363 1097 1.676014 GGTCAGACAAAGGTCCCGATG 60.676 57.143 2.17 0.00 45.48 3.84
364 1098 0.036388 TCAGACAAAGGTCCCGATGC 60.036 55.000 0.00 0.00 45.48 3.91
366 1100 0.620556 AGACAAAGGTCCCGATGCAT 59.379 50.000 0.00 0.00 45.48 3.96
367 1101 1.837439 AGACAAAGGTCCCGATGCATA 59.163 47.619 0.00 0.00 45.48 3.14
368 1102 2.238646 AGACAAAGGTCCCGATGCATAA 59.761 45.455 0.00 0.00 45.48 1.90
369 1103 2.354821 GACAAAGGTCCCGATGCATAAC 59.645 50.000 0.00 0.00 38.12 1.89
372 1106 1.597027 GGTCCCGATGCATAACCCG 60.597 63.158 0.00 0.00 0.00 5.28
373 1107 1.145377 GTCCCGATGCATAACCCGT 59.855 57.895 0.00 0.00 0.00 5.28
374 1108 0.878961 GTCCCGATGCATAACCCGTC 60.879 60.000 0.00 0.00 0.00 4.79
376 1110 1.066752 CCGATGCATAACCCGTCGA 59.933 57.895 0.00 0.00 42.63 4.20
377 1111 1.213094 CCGATGCATAACCCGTCGAC 61.213 60.000 5.18 5.18 42.63 4.20
378 1112 1.537289 CGATGCATAACCCGTCGACG 61.537 60.000 30.33 30.33 42.63 5.12
419 1161 1.134226 CCGTCGGGTTATTACGCATC 58.866 55.000 2.34 0.00 37.07 3.91
424 1166 2.105134 TCGGGTTATTACGCATCCCATT 59.895 45.455 0.00 0.00 38.15 3.16
435 1177 0.394216 CATCCCATTCGGCAGGACAA 60.394 55.000 0.00 0.00 30.97 3.18
444 1186 1.518056 CGGCAGGACAACAGTGCATT 61.518 55.000 0.00 0.00 39.05 3.56
448 1190 1.812571 CAGGACAACAGTGCATTACCC 59.187 52.381 0.00 0.00 0.00 3.69
449 1191 1.423541 AGGACAACAGTGCATTACCCA 59.576 47.619 0.00 0.00 0.00 4.51
450 1192 1.812571 GGACAACAGTGCATTACCCAG 59.187 52.381 0.00 0.00 0.00 4.45
459 1201 2.744202 GTGCATTACCCAGACTGTTCAG 59.256 50.000 0.93 0.00 0.00 3.02
553 1306 3.625897 CCACGGCAGACCAGACCA 61.626 66.667 0.00 0.00 34.57 4.02
554 1307 2.047844 CACGGCAGACCAGACCAG 60.048 66.667 0.00 0.00 34.57 4.00
555 1308 2.203640 ACGGCAGACCAGACCAGA 60.204 61.111 0.00 0.00 34.57 3.86
556 1309 2.279069 ACGGCAGACCAGACCAGAG 61.279 63.158 0.00 0.00 34.57 3.35
557 1310 2.279069 CGGCAGACCAGACCAGAGT 61.279 63.158 0.00 0.00 34.57 3.24
571 1324 2.181021 GAGTACCAGACCACGCGG 59.819 66.667 12.47 0.00 38.77 6.46
648 1401 7.281100 CCAGGGAGTTGTTAATTCTATCTGAAC 59.719 40.741 0.00 0.00 37.52 3.18
660 1418 1.739067 ATCTGAACTAAAGGCGGCAC 58.261 50.000 13.08 0.00 0.00 5.01
675 1433 1.156645 GGCACGGTGAGCAGATGATC 61.157 60.000 13.29 0.00 0.00 2.92
676 1434 0.179089 GCACGGTGAGCAGATGATCT 60.179 55.000 13.29 0.00 0.00 2.75
677 1435 1.850377 CACGGTGAGCAGATGATCTC 58.150 55.000 0.74 0.00 0.00 2.75
678 1436 0.383590 ACGGTGAGCAGATGATCTCG 59.616 55.000 0.00 10.88 35.39 4.04
679 1437 0.318529 CGGTGAGCAGATGATCTCGG 60.319 60.000 0.00 0.00 32.20 4.63
680 1438 0.033228 GGTGAGCAGATGATCTCGGG 59.967 60.000 0.00 0.00 32.20 5.14
681 1439 0.599728 GTGAGCAGATGATCTCGGGC 60.600 60.000 0.00 0.00 32.20 6.13
682 1440 1.005156 GAGCAGATGATCTCGGGCC 60.005 63.158 0.00 0.00 31.72 5.80
683 1441 2.031768 GCAGATGATCTCGGGCCC 59.968 66.667 13.57 13.57 0.00 5.80
684 1442 2.341543 CAGATGATCTCGGGCCCG 59.658 66.667 39.13 39.13 41.35 6.13
685 1443 2.919856 AGATGATCTCGGGCCCGG 60.920 66.667 42.36 31.59 40.25 5.73
686 1444 3.234730 GATGATCTCGGGCCCGGT 61.235 66.667 42.36 28.51 40.25 5.28
687 1445 3.227792 GATGATCTCGGGCCCGGTC 62.228 68.421 42.36 33.59 40.25 4.79
793 1552 4.821589 GCCCGTCCGAGGAAGCTG 62.822 72.222 0.00 0.00 0.00 4.24
794 1553 4.821589 CCCGTCCGAGGAAGCTGC 62.822 72.222 0.00 0.00 0.00 5.25
796 1555 4.821589 CGTCCGAGGAAGCTGCCC 62.822 72.222 7.30 1.53 0.00 5.36
797 1556 4.475135 GTCCGAGGAAGCTGCCCC 62.475 72.222 7.30 0.00 0.00 5.80
801 1560 4.821589 GAGGAAGCTGCCCCGACG 62.822 72.222 7.30 0.00 0.00 5.12
896 1655 2.175202 GACTCACATCACCTCACCTCT 58.825 52.381 0.00 0.00 0.00 3.69
897 1656 2.165437 GACTCACATCACCTCACCTCTC 59.835 54.545 0.00 0.00 0.00 3.20
898 1657 1.133982 CTCACATCACCTCACCTCTCG 59.866 57.143 0.00 0.00 0.00 4.04
899 1658 0.459237 CACATCACCTCACCTCTCGC 60.459 60.000 0.00 0.00 0.00 5.03
900 1659 1.142748 CATCACCTCACCTCTCGCC 59.857 63.158 0.00 0.00 0.00 5.54
930 1689 1.968540 GCAGCGCCACCTTTCTTCT 60.969 57.895 2.29 0.00 0.00 2.85
931 1690 0.673644 GCAGCGCCACCTTTCTTCTA 60.674 55.000 2.29 0.00 0.00 2.10
932 1691 1.079503 CAGCGCCACCTTTCTTCTAC 58.920 55.000 2.29 0.00 0.00 2.59
935 1694 1.337823 GCGCCACCTTTCTTCTACAGA 60.338 52.381 0.00 0.00 0.00 3.41
936 1695 2.870435 GCGCCACCTTTCTTCTACAGAA 60.870 50.000 0.00 0.00 39.99 3.02
938 1697 3.555168 CGCCACCTTTCTTCTACAGAACT 60.555 47.826 0.00 0.00 41.56 3.01
939 1698 3.997681 GCCACCTTTCTTCTACAGAACTC 59.002 47.826 0.00 0.00 41.56 3.01
940 1699 4.238514 CCACCTTTCTTCTACAGAACTCG 58.761 47.826 0.00 0.00 41.56 4.18
941 1700 4.022242 CCACCTTTCTTCTACAGAACTCGA 60.022 45.833 0.00 0.00 41.56 4.04
944 1703 5.031578 CCTTTCTTCTACAGAACTCGATCG 58.968 45.833 9.36 9.36 41.56 3.69
945 1704 5.392165 CCTTTCTTCTACAGAACTCGATCGT 60.392 44.000 15.94 0.00 41.56 3.73
946 1705 4.861389 TCTTCTACAGAACTCGATCGTC 57.139 45.455 15.94 5.50 0.00 4.20
947 1706 4.505808 TCTTCTACAGAACTCGATCGTCT 58.494 43.478 15.94 7.99 0.00 4.18
949 1708 3.196463 TCTACAGAACTCGATCGTCTCC 58.804 50.000 15.94 3.77 0.00 3.71
950 1709 2.116827 ACAGAACTCGATCGTCTCCT 57.883 50.000 15.94 6.06 0.00 3.69
951 1710 3.263489 ACAGAACTCGATCGTCTCCTA 57.737 47.619 15.94 0.00 0.00 2.94
953 1712 2.937149 CAGAACTCGATCGTCTCCTACA 59.063 50.000 15.94 0.00 0.00 2.74
957 1716 1.600013 CTCGATCGTCTCCTACACCAG 59.400 57.143 15.94 0.00 0.00 4.00
960 1719 2.224549 CGATCGTCTCCTACACCAGATC 59.775 54.545 7.03 0.00 0.00 2.75
968 1727 0.249238 CTACACCAGATCCAGCGCTC 60.249 60.000 7.13 0.00 0.00 5.03
976 1735 0.596082 GATCCAGCGCTCTCCTCTAC 59.404 60.000 7.13 0.00 0.00 2.59
977 1736 0.184933 ATCCAGCGCTCTCCTCTACT 59.815 55.000 7.13 0.00 0.00 2.57
979 1738 0.102120 CCAGCGCTCTCCTCTACTTG 59.898 60.000 7.13 0.00 0.00 3.16
983 1742 1.388547 CGCTCTCCTCTACTTGCTCT 58.611 55.000 0.00 0.00 0.00 4.09
984 1743 2.566913 CGCTCTCCTCTACTTGCTCTA 58.433 52.381 0.00 0.00 0.00 2.43
1031 1790 1.335415 CGCGATCATCTCCGACTTCAT 60.335 52.381 0.00 0.00 0.00 2.57
1098 1857 1.135315 CGACTTCTGGCCAAATGCG 59.865 57.895 7.01 3.40 42.61 4.73
1099 1858 1.508088 GACTTCTGGCCAAATGCGG 59.492 57.895 7.01 0.00 42.61 5.69
1205 1986 1.003118 TGAGCACCAAGGTACCATCAC 59.997 52.381 15.94 0.00 0.00 3.06
1212 1993 3.194968 ACCAAGGTACCATCACGTTCTAG 59.805 47.826 15.94 0.00 0.00 2.43
1215 1996 3.031736 AGGTACCATCACGTTCTAGCAT 58.968 45.455 15.94 0.00 0.00 3.79
1218 1999 2.893637 ACCATCACGTTCTAGCATCAC 58.106 47.619 0.00 0.00 0.00 3.06
1225 2006 0.375106 GTTCTAGCATCACGCCAAGC 59.625 55.000 0.00 0.00 44.04 4.01
1230 2011 1.443194 GCATCACGCCAAGCACTTG 60.443 57.895 3.32 3.32 40.13 3.16
1231 2012 1.443194 CATCACGCCAAGCACTTGC 60.443 57.895 4.82 0.00 39.16 4.01
1255 2036 1.466856 ACGTACTATCTGTGCCCGAA 58.533 50.000 0.00 0.00 0.00 4.30
1266 2047 2.049248 GCCCGAACGTACCGTGAA 60.049 61.111 9.00 0.00 39.99 3.18
1267 2048 1.664333 GCCCGAACGTACCGTGAAA 60.664 57.895 9.00 0.00 39.99 2.69
1269 2050 0.508213 CCCGAACGTACCGTGAAAAC 59.492 55.000 9.00 0.00 39.99 2.43
1270 2051 0.508213 CCGAACGTACCGTGAAAACC 59.492 55.000 9.00 0.00 39.99 3.27
1278 2059 0.182775 ACCGTGAAAACCTTCTGCCT 59.817 50.000 0.00 0.00 32.33 4.75
1279 2060 1.318576 CCGTGAAAACCTTCTGCCTT 58.681 50.000 0.00 0.00 32.33 4.35
1598 2414 4.805231 CCGTCGTACATGGCGCCA 62.805 66.667 34.80 34.80 0.00 5.69
1663 2479 2.363683 GATGGAGCTCTGGAACTTTGG 58.636 52.381 14.64 0.00 0.00 3.28
1705 2521 7.288852 AGTGCCTATGTGATAGATAGAAACTGT 59.711 37.037 0.00 0.00 34.77 3.55
1708 2524 7.327275 GCCTATGTGATAGATAGAAACTGTTCG 59.673 40.741 0.00 0.00 35.52 3.95
1709 2525 8.353684 CCTATGTGATAGATAGAAACTGTTCGT 58.646 37.037 0.00 0.00 35.52 3.85
1731 2548 8.942338 TCGTTTCTTCTACATGTAATATTGCT 57.058 30.769 7.06 0.00 0.00 3.91
1773 2919 7.813645 TGTGCTTATGATGAATTATGATCTGC 58.186 34.615 0.00 0.00 0.00 4.26
1800 2946 0.179000 GGCCACTGTCATCGGATCTT 59.821 55.000 0.00 0.00 0.00 2.40
1801 2947 1.293924 GCCACTGTCATCGGATCTTG 58.706 55.000 0.00 0.00 0.00 3.02
1802 2948 1.134699 GCCACTGTCATCGGATCTTGA 60.135 52.381 0.00 0.00 0.00 3.02
1803 2949 2.484417 GCCACTGTCATCGGATCTTGAT 60.484 50.000 0.00 0.00 0.00 2.57
1804 2950 3.243873 GCCACTGTCATCGGATCTTGATA 60.244 47.826 0.00 0.00 0.00 2.15
1858 3004 5.900339 TCGCCAAATATCATCTAACGAAC 57.100 39.130 0.00 0.00 0.00 3.95
1901 3093 1.399791 GTAGAATGAGCACAAGCAGCC 59.600 52.381 0.00 0.00 45.49 4.85
1912 3104 0.238289 CAAGCAGCCTAACACCAACG 59.762 55.000 0.00 0.00 0.00 4.10
2007 3201 8.356533 AGTTGCAAAATACTGAAACAAGAATG 57.643 30.769 0.00 0.00 37.32 2.67
2028 3222 7.768120 AGAATGAACTGGTTCTGAATACTCATC 59.232 37.037 13.54 0.00 40.14 2.92
2039 3233 5.416013 TCTGAATACTCATCGACACAAGACT 59.584 40.000 0.00 0.00 0.00 3.24
2054 3248 5.221521 ACACAAGACTCTGACATCTAAAGCA 60.222 40.000 0.00 0.00 0.00 3.91
2098 3298 6.727824 AAAGTGAAGATTGACCGATAACAG 57.272 37.500 0.00 0.00 0.00 3.16
2099 3299 4.184629 AGTGAAGATTGACCGATAACAGC 58.815 43.478 0.00 0.00 0.00 4.40
2101 3301 4.391830 GTGAAGATTGACCGATAACAGCAA 59.608 41.667 0.00 0.00 0.00 3.91
2105 3305 4.943705 AGATTGACCGATAACAGCAAATGT 59.056 37.500 0.00 0.00 46.97 2.71
2106 3306 4.418013 TTGACCGATAACAGCAAATGTG 57.582 40.909 0.00 0.00 43.00 3.21
2112 3312 4.406069 CGATAACAGCAAATGTGACAAGG 58.594 43.478 0.00 0.00 43.00 3.61
2114 3314 2.071778 ACAGCAAATGTGACAAGGGT 57.928 45.000 0.00 0.00 41.91 4.34
2118 3318 0.039256 CAAATGTGACAAGGGTGCCG 60.039 55.000 0.00 0.00 0.00 5.69
2119 3319 0.179004 AAATGTGACAAGGGTGCCGA 60.179 50.000 0.00 0.00 0.00 5.54
2123 3323 0.030235 GTGACAAGGGTGCCGAAAAC 59.970 55.000 0.00 0.00 0.00 2.43
2129 3329 2.613506 GGGTGCCGAAAACTCCACG 61.614 63.158 0.00 0.00 0.00 4.94
2192 3392 2.113860 TCTCGAATTTCCTGCCCTTG 57.886 50.000 0.00 0.00 0.00 3.61
2258 3458 1.178534 TGCCAAAGTGCCTAACAGCC 61.179 55.000 0.00 0.00 0.00 4.85
2330 3530 9.620660 GTAAACTGTTAAAATGGTTGTCTATGG 57.379 33.333 0.00 0.00 0.00 2.74
2339 3539 6.655078 AATGGTTGTCTATGGCATTTATCC 57.345 37.500 4.78 2.45 0.00 2.59
2340 3540 5.122707 TGGTTGTCTATGGCATTTATCCA 57.877 39.130 4.78 5.10 38.09 3.41
2341 3541 5.704354 TGGTTGTCTATGGCATTTATCCAT 58.296 37.500 4.78 0.00 45.60 3.41
2342 3542 5.535783 TGGTTGTCTATGGCATTTATCCATG 59.464 40.000 4.78 0.00 43.67 3.66
2343 3543 5.769662 GGTTGTCTATGGCATTTATCCATGA 59.230 40.000 4.78 0.00 43.67 3.07
2345 3545 7.039504 GGTTGTCTATGGCATTTATCCATGAAT 60.040 37.037 4.78 0.00 43.67 2.57
2346 3546 9.013229 GTTGTCTATGGCATTTATCCATGAATA 57.987 33.333 4.78 0.00 43.67 1.75
2348 3548 9.013229 TGTCTATGGCATTTATCCATGAATAAC 57.987 33.333 4.78 0.00 43.67 1.89
2349 3549 8.177663 GTCTATGGCATTTATCCATGAATAACG 58.822 37.037 4.78 0.00 43.67 3.18
2350 3550 5.119931 TGGCATTTATCCATGAATAACGC 57.880 39.130 0.00 0.00 0.00 4.84
2351 3551 4.826733 TGGCATTTATCCATGAATAACGCT 59.173 37.500 0.00 0.00 0.00 5.07
2357 3558 9.299963 CATTTATCCATGAATAACGCTTCAAAA 57.700 29.630 0.00 0.00 38.55 2.44
2427 3628 6.127366 GGAAACCATCATCATACCACATGTTT 60.127 38.462 0.00 0.00 0.00 2.83
2460 3661 7.918562 TCTCAAAACAAAAGAAAAAGGATACCG 59.081 33.333 0.00 0.00 37.17 4.02
2467 3668 8.852135 ACAAAAGAAAAAGGATACCGTAAATCA 58.148 29.630 0.00 0.00 37.17 2.57
2495 3696 8.924303 AGCAAATACCTCTACATGACTACAATA 58.076 33.333 0.00 0.00 0.00 1.90
2496 3697 8.979574 GCAAATACCTCTACATGACTACAATAC 58.020 37.037 0.00 0.00 0.00 1.89
2501 3702 7.556844 ACCTCTACATGACTACAATACCAAAG 58.443 38.462 0.00 0.00 0.00 2.77
2565 3786 5.004726 GGCAACGCAATGAAATCATAAAGAC 59.995 40.000 0.00 0.00 35.10 3.01
2568 3789 6.455360 ACGCAATGAAATCATAAAGACCAT 57.545 33.333 0.00 0.00 35.10 3.55
2590 3811 0.040067 CAAGAAGGAACAGCGGCAAC 60.040 55.000 1.45 0.00 0.00 4.17
2595 3816 1.299089 GGAACAGCGGCAACAACAC 60.299 57.895 1.45 0.00 0.00 3.32
2612 3835 6.060028 ACAACACACACACTGAATTATCAC 57.940 37.500 0.00 0.00 0.00 3.06
2617 3840 5.633601 CACACACACTGAATTATCACGTACT 59.366 40.000 0.00 0.00 0.00 2.73
2618 3841 5.862323 ACACACACTGAATTATCACGTACTC 59.138 40.000 0.00 0.00 0.00 2.59
2619 3842 5.288712 CACACACTGAATTATCACGTACTCC 59.711 44.000 0.00 0.00 0.00 3.85
2620 3843 4.804139 CACACTGAATTATCACGTACTCCC 59.196 45.833 0.00 0.00 0.00 4.30
2621 3844 4.710375 ACACTGAATTATCACGTACTCCCT 59.290 41.667 0.00 0.00 0.00 4.20
2622 3845 5.163540 ACACTGAATTATCACGTACTCCCTC 60.164 44.000 0.00 0.00 0.00 4.30
2623 3846 5.067936 CACTGAATTATCACGTACTCCCTCT 59.932 44.000 0.00 0.00 0.00 3.69
2624 3847 5.067936 ACTGAATTATCACGTACTCCCTCTG 59.932 44.000 0.00 0.00 0.00 3.35
2625 3848 4.954202 TGAATTATCACGTACTCCCTCTGT 59.046 41.667 0.00 0.00 0.00 3.41
2626 3849 5.067413 TGAATTATCACGTACTCCCTCTGTC 59.933 44.000 0.00 0.00 0.00 3.51
2627 3850 1.765230 ATCACGTACTCCCTCTGTCC 58.235 55.000 0.00 0.00 0.00 4.02
2628 3851 0.675837 TCACGTACTCCCTCTGTCCG 60.676 60.000 0.00 0.00 0.00 4.79
2629 3852 1.378250 ACGTACTCCCTCTGTCCGG 60.378 63.158 0.00 0.00 0.00 5.14
2630 3853 1.077930 CGTACTCCCTCTGTCCGGA 60.078 63.158 0.00 0.00 0.00 5.14
2631 3854 0.679002 CGTACTCCCTCTGTCCGGAA 60.679 60.000 5.23 0.00 0.00 4.30
2632 3855 1.777941 GTACTCCCTCTGTCCGGAAT 58.222 55.000 5.23 0.00 0.00 3.01
2633 3856 2.108970 GTACTCCCTCTGTCCGGAATT 58.891 52.381 5.23 0.00 0.00 2.17
2634 3857 2.544844 ACTCCCTCTGTCCGGAATTA 57.455 50.000 5.23 0.00 0.00 1.40
2635 3858 2.108970 ACTCCCTCTGTCCGGAATTAC 58.891 52.381 5.23 0.00 0.00 1.89
2636 3859 2.292323 ACTCCCTCTGTCCGGAATTACT 60.292 50.000 5.23 0.00 0.00 2.24
2637 3860 2.766828 CTCCCTCTGTCCGGAATTACTT 59.233 50.000 5.23 0.00 0.00 2.24
2638 3861 2.500098 TCCCTCTGTCCGGAATTACTTG 59.500 50.000 5.23 0.00 0.00 3.16
2639 3862 2.236395 CCCTCTGTCCGGAATTACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
2640 3863 3.522553 CCTCTGTCCGGAATTACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
2641 3864 3.179830 CTCTGTCCGGAATTACTTGTCG 58.820 50.000 5.23 0.00 0.00 4.35
2642 3865 2.559668 TCTGTCCGGAATTACTTGTCGT 59.440 45.455 5.23 0.00 0.00 4.34
2643 3866 3.758023 TCTGTCCGGAATTACTTGTCGTA 59.242 43.478 5.23 0.00 0.00 3.43
2644 3867 4.218200 TCTGTCCGGAATTACTTGTCGTAA 59.782 41.667 5.23 0.00 41.97 3.18
2645 3868 4.880759 TGTCCGGAATTACTTGTCGTAAA 58.119 39.130 5.23 0.00 41.17 2.01
2646 3869 5.295950 TGTCCGGAATTACTTGTCGTAAAA 58.704 37.500 5.23 0.00 41.17 1.52
2647 3870 5.406175 TGTCCGGAATTACTTGTCGTAAAAG 59.594 40.000 5.23 0.00 41.17 2.27
2648 3871 5.406477 GTCCGGAATTACTTGTCGTAAAAGT 59.594 40.000 5.23 5.68 41.17 2.66
2649 3872 5.406175 TCCGGAATTACTTGTCGTAAAAGTG 59.594 40.000 0.00 0.00 41.17 3.16
2650 3873 5.390145 CCGGAATTACTTGTCGTAAAAGTGG 60.390 44.000 0.00 0.26 41.17 4.00
2651 3874 5.406175 CGGAATTACTTGTCGTAAAAGTGGA 59.594 40.000 9.39 1.43 41.17 4.02
2652 3875 6.091713 CGGAATTACTTGTCGTAAAAGTGGAT 59.908 38.462 9.39 3.14 41.17 3.41
2653 3876 7.241376 GGAATTACTTGTCGTAAAAGTGGATG 58.759 38.462 9.39 0.00 41.17 3.51
2654 3877 7.118680 GGAATTACTTGTCGTAAAAGTGGATGA 59.881 37.037 9.39 0.00 41.17 2.92
2655 3878 7.972832 ATTACTTGTCGTAAAAGTGGATGAA 57.027 32.000 9.39 0.00 41.17 2.57
2656 3879 7.972832 TTACTTGTCGTAAAAGTGGATGAAT 57.027 32.000 9.39 0.00 38.32 2.57
2657 3880 6.481954 ACTTGTCGTAAAAGTGGATGAATC 57.518 37.500 0.51 0.00 36.52 2.52
2658 3881 6.231211 ACTTGTCGTAAAAGTGGATGAATCT 58.769 36.000 0.51 0.00 36.52 2.40
2659 3882 7.383687 ACTTGTCGTAAAAGTGGATGAATCTA 58.616 34.615 0.51 0.00 36.52 1.98
2660 3883 7.545965 ACTTGTCGTAAAAGTGGATGAATCTAG 59.454 37.037 0.51 0.00 36.52 2.43
2661 3884 7.165460 TGTCGTAAAAGTGGATGAATCTAGA 57.835 36.000 0.00 0.00 0.00 2.43
2662 3885 7.033791 TGTCGTAAAAGTGGATGAATCTAGAC 58.966 38.462 0.00 0.00 0.00 2.59
2663 3886 7.033791 GTCGTAAAAGTGGATGAATCTAGACA 58.966 38.462 0.00 0.00 0.00 3.41
2664 3887 7.707035 GTCGTAAAAGTGGATGAATCTAGACAT 59.293 37.037 0.00 0.00 0.00 3.06
2665 3888 8.909923 TCGTAAAAGTGGATGAATCTAGACATA 58.090 33.333 0.00 0.00 0.00 2.29
2666 3889 9.698309 CGTAAAAGTGGATGAATCTAGACATAT 57.302 33.333 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.532032 CCACAATATCCACATCTACAATGCA 59.468 40.000 0.00 0.00 0.00 3.96
3 4 5.764686 TCCACAATATCCACATCTACAATGC 59.235 40.000 0.00 0.00 0.00 3.56
4 5 7.991084 ATCCACAATATCCACATCTACAATG 57.009 36.000 0.00 0.00 0.00 2.82
25 26 5.684184 GCGAAAACCGTATTGGAAAATATCC 59.316 40.000 0.00 0.00 44.04 2.59
28 29 5.883503 AGCGAAAACCGTATTGGAAAATA 57.116 34.783 0.00 0.00 42.00 1.40
29 30 4.776795 AGCGAAAACCGTATTGGAAAAT 57.223 36.364 0.00 0.00 42.00 1.82
30 31 4.996122 TCTAGCGAAAACCGTATTGGAAAA 59.004 37.500 0.00 0.00 42.00 2.29
31 32 4.567971 TCTAGCGAAAACCGTATTGGAAA 58.432 39.130 0.00 0.00 42.00 3.13
34 35 3.777478 TCTCTAGCGAAAACCGTATTGG 58.223 45.455 0.00 0.00 46.41 3.16
35 36 5.773239 TTTCTCTAGCGAAAACCGTATTG 57.227 39.130 5.42 0.00 41.15 1.90
36 37 6.790285 TTTTTCTCTAGCGAAAACCGTATT 57.210 33.333 17.91 0.00 41.19 1.89
93 94 8.660373 CGTCTCTTTTCTTTTTACTCTGCATAT 58.340 33.333 0.00 0.00 0.00 1.78
94 95 7.117812 CCGTCTCTTTTCTTTTTACTCTGCATA 59.882 37.037 0.00 0.00 0.00 3.14
95 96 6.073003 CCGTCTCTTTTCTTTTTACTCTGCAT 60.073 38.462 0.00 0.00 0.00 3.96
96 97 5.236478 CCGTCTCTTTTCTTTTTACTCTGCA 59.764 40.000 0.00 0.00 0.00 4.41
98 99 6.846325 ACCGTCTCTTTTCTTTTTACTCTG 57.154 37.500 0.00 0.00 0.00 3.35
99 100 7.652507 CAGTACCGTCTCTTTTCTTTTTACTCT 59.347 37.037 0.00 0.00 0.00 3.24
100 101 7.650903 TCAGTACCGTCTCTTTTCTTTTTACTC 59.349 37.037 0.00 0.00 0.00 2.59
104 105 6.346896 ACTCAGTACCGTCTCTTTTCTTTTT 58.653 36.000 0.00 0.00 0.00 1.94
106 107 5.532664 ACTCAGTACCGTCTCTTTTCTTT 57.467 39.130 0.00 0.00 0.00 2.52
108 109 4.341520 ACAACTCAGTACCGTCTCTTTTCT 59.658 41.667 0.00 0.00 0.00 2.52
110 111 4.667519 ACAACTCAGTACCGTCTCTTTT 57.332 40.909 0.00 0.00 0.00 2.27
112 113 4.396522 AGTACAACTCAGTACCGTCTCTT 58.603 43.478 0.00 0.00 44.19 2.85
113 114 4.002316 GAGTACAACTCAGTACCGTCTCT 58.998 47.826 2.22 0.00 44.45 3.10
114 115 3.126686 GGAGTACAACTCAGTACCGTCTC 59.873 52.174 9.15 0.00 46.79 3.36
115 116 3.080319 GGAGTACAACTCAGTACCGTCT 58.920 50.000 9.15 0.00 46.79 4.18
116 117 2.163211 GGGAGTACAACTCAGTACCGTC 59.837 54.545 9.15 0.00 46.79 4.79
117 118 2.165998 GGGAGTACAACTCAGTACCGT 58.834 52.381 9.15 0.00 46.79 4.83
118 119 2.422832 GAGGGAGTACAACTCAGTACCG 59.577 54.545 9.15 0.00 46.79 4.02
119 120 2.759535 GGAGGGAGTACAACTCAGTACC 59.240 54.545 9.15 1.50 46.79 3.34
120 121 2.422832 CGGAGGGAGTACAACTCAGTAC 59.577 54.545 9.15 0.00 46.79 2.73
121 122 2.040813 ACGGAGGGAGTACAACTCAGTA 59.959 50.000 12.79 0.00 46.79 2.74
122 123 1.203025 ACGGAGGGAGTACAACTCAGT 60.203 52.381 9.15 10.89 46.79 3.41
123 124 1.473278 GACGGAGGGAGTACAACTCAG 59.527 57.143 9.15 10.39 46.79 3.35
124 125 1.542492 GACGGAGGGAGTACAACTCA 58.458 55.000 9.15 0.00 46.79 3.41
125 126 0.816373 GGACGGAGGGAGTACAACTC 59.184 60.000 0.00 0.00 44.32 3.01
127 128 0.901580 TGGGACGGAGGGAGTACAAC 60.902 60.000 0.00 0.00 0.00 3.32
128 129 0.178926 TTGGGACGGAGGGAGTACAA 60.179 55.000 0.00 0.00 0.00 2.41
129 130 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
131 132 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
132 133 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
133 134 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
134 135 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
135 136 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
136 137 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
138 139 3.615592 CGAGTCACTTATTTTGGGACGGA 60.616 47.826 0.00 0.00 33.84 4.69
139 140 2.671396 CGAGTCACTTATTTTGGGACGG 59.329 50.000 0.00 0.00 33.84 4.79
141 142 4.566987 AGTCGAGTCACTTATTTTGGGAC 58.433 43.478 0.00 0.00 0.00 4.46
142 143 4.884668 AGTCGAGTCACTTATTTTGGGA 57.115 40.909 0.00 0.00 0.00 4.37
143 144 5.238650 ACAAAGTCGAGTCACTTATTTTGGG 59.761 40.000 11.39 0.00 35.45 4.12
147 148 9.189723 GTTAGTACAAAGTCGAGTCACTTATTT 57.810 33.333 0.00 1.15 35.45 1.40
148 149 8.574737 AGTTAGTACAAAGTCGAGTCACTTATT 58.425 33.333 0.00 2.93 35.45 1.40
149 150 8.108551 AGTTAGTACAAAGTCGAGTCACTTAT 57.891 34.615 0.00 4.10 35.45 1.73
150 151 7.502120 AGTTAGTACAAAGTCGAGTCACTTA 57.498 36.000 0.00 0.00 35.45 2.24
152 153 6.388435 AAGTTAGTACAAAGTCGAGTCACT 57.612 37.500 0.00 0.00 0.00 3.41
154 155 7.934457 ACTAAAGTTAGTACAAAGTCGAGTCA 58.066 34.615 1.81 0.00 41.92 3.41
179 180 9.831737 GTGACTCGACTTTGTACTAACTTTATA 57.168 33.333 0.00 0.00 0.00 0.98
180 181 8.574737 AGTGACTCGACTTTGTACTAACTTTAT 58.425 33.333 0.00 0.00 0.00 1.40
181 182 7.934457 AGTGACTCGACTTTGTACTAACTTTA 58.066 34.615 0.00 0.00 0.00 1.85
182 183 6.803642 AGTGACTCGACTTTGTACTAACTTT 58.196 36.000 0.00 0.00 0.00 2.66
183 184 6.388435 AGTGACTCGACTTTGTACTAACTT 57.612 37.500 0.00 0.00 0.00 2.66
184 185 6.388435 AAGTGACTCGACTTTGTACTAACT 57.612 37.500 0.00 0.00 31.92 2.24
185 186 8.739649 AATAAGTGACTCGACTTTGTACTAAC 57.260 34.615 0.00 0.00 37.38 2.34
186 187 9.754382 AAAATAAGTGACTCGACTTTGTACTAA 57.246 29.630 0.00 0.00 37.38 2.24
187 188 9.188588 CAAAATAAGTGACTCGACTTTGTACTA 57.811 33.333 0.00 0.00 37.38 1.82
188 189 7.170998 CCAAAATAAGTGACTCGACTTTGTACT 59.829 37.037 0.00 0.00 37.38 2.73
191 192 5.238650 CCCAAAATAAGTGACTCGACTTTGT 59.761 40.000 0.00 0.00 37.38 2.83
192 193 5.468746 TCCCAAAATAAGTGACTCGACTTTG 59.531 40.000 0.00 0.00 37.38 2.77
193 194 5.469084 GTCCCAAAATAAGTGACTCGACTTT 59.531 40.000 0.00 0.00 37.38 2.66
194 195 4.995487 GTCCCAAAATAAGTGACTCGACTT 59.005 41.667 0.00 0.00 39.54 3.01
195 196 4.566987 GTCCCAAAATAAGTGACTCGACT 58.433 43.478 0.00 0.00 0.00 4.18
198 199 2.671396 CCGTCCCAAAATAAGTGACTCG 59.329 50.000 0.00 0.00 0.00 4.18
199 200 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
200 201 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
201 202 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
204 205 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
205 206 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
206 207 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
207 208 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
209 210 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
210 211 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
211 212 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
212 213 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
213 214 0.257039 TGTACTACTCCCTCCGTCCC 59.743 60.000 0.00 0.00 0.00 4.46
215 216 3.249559 CGTTATGTACTACTCCCTCCGTC 59.750 52.174 0.00 0.00 0.00 4.79
217 218 2.031333 GCGTTATGTACTACTCCCTCCG 60.031 54.545 0.00 0.00 0.00 4.63
218 219 2.295629 GGCGTTATGTACTACTCCCTCC 59.704 54.545 0.00 0.00 0.00 4.30
220 221 2.957006 CAGGCGTTATGTACTACTCCCT 59.043 50.000 0.00 0.00 0.00 4.20
221 222 2.545322 GCAGGCGTTATGTACTACTCCC 60.545 54.545 0.00 0.00 0.00 4.30
222 223 2.361438 AGCAGGCGTTATGTACTACTCC 59.639 50.000 0.00 0.00 0.00 3.85
236 968 0.311790 TTTTCTTCAGCAAGCAGGCG 59.688 50.000 0.00 0.00 39.27 5.52
239 971 1.983605 CGCATTTTCTTCAGCAAGCAG 59.016 47.619 0.00 0.00 0.00 4.24
275 1007 3.242804 TGCACGTGATATCGTCGTTATCA 60.243 43.478 22.23 17.92 42.27 2.15
278 1010 2.828874 TGCACGTGATATCGTCGTTA 57.171 45.000 22.23 10.90 42.27 3.18
280 1012 2.203800 ATTGCACGTGATATCGTCGT 57.796 45.000 22.23 16.32 42.27 4.34
285 1017 4.708868 TCGCTTAATTGCACGTGATATC 57.291 40.909 22.23 1.13 0.00 1.63
289 1021 1.202020 GCATCGCTTAATTGCACGTGA 60.202 47.619 22.23 0.00 36.40 4.35
356 1090 1.444250 GACGGGTTATGCATCGGGA 59.556 57.895 0.19 0.00 0.00 5.14
358 1092 1.066752 TCGACGGGTTATGCATCGG 59.933 57.895 0.19 0.00 33.66 4.18
359 1093 1.537289 CGTCGACGGGTTATGCATCG 61.537 60.000 29.70 2.67 35.37 3.84
360 1094 2.213483 CGTCGACGGGTTATGCATC 58.787 57.895 29.70 0.00 35.37 3.91
361 1095 4.412933 CGTCGACGGGTTATGCAT 57.587 55.556 29.70 3.79 35.37 3.96
403 1145 1.121378 TGGGATGCGTAATAACCCGA 58.879 50.000 0.00 0.00 43.04 5.14
419 1161 1.303236 TGTTGTCCTGCCGAATGGG 60.303 57.895 0.00 0.00 39.58 4.00
424 1166 2.280797 GCACTGTTGTCCTGCCGA 60.281 61.111 0.00 0.00 0.00 5.54
435 1177 1.699634 ACAGTCTGGGTAATGCACTGT 59.300 47.619 4.53 0.00 42.26 3.55
541 1294 0.533032 GGTACTCTGGTCTGGTCTGC 59.467 60.000 0.00 0.00 0.00 4.26
550 1303 1.533469 GCGTGGTCTGGTACTCTGGT 61.533 60.000 0.00 0.00 0.00 4.00
551 1304 1.215647 GCGTGGTCTGGTACTCTGG 59.784 63.158 0.00 0.00 0.00 3.86
552 1305 1.154016 CGCGTGGTCTGGTACTCTG 60.154 63.158 0.00 0.00 0.00 3.35
553 1306 2.341101 CCGCGTGGTCTGGTACTCT 61.341 63.158 6.91 0.00 0.00 3.24
554 1307 2.181021 CCGCGTGGTCTGGTACTC 59.819 66.667 6.91 0.00 0.00 2.59
555 1308 4.065281 GCCGCGTGGTCTGGTACT 62.065 66.667 17.91 0.00 37.67 2.73
556 1309 4.065281 AGCCGCGTGGTCTGGTAC 62.065 66.667 17.91 0.00 37.67 3.34
557 1310 4.063967 CAGCCGCGTGGTCTGGTA 62.064 66.667 23.50 0.00 36.40 3.25
571 1324 2.262211 GGGTTTCATTTTCATCGCAGC 58.738 47.619 0.00 0.00 0.00 5.25
577 1330 1.567357 CCCCCGGGTTTCATTTTCAT 58.433 50.000 21.85 0.00 0.00 2.57
648 1401 2.047655 TCACCGTGCCGCCTTTAG 60.048 61.111 0.00 0.00 0.00 1.85
660 1418 0.318529 CCGAGATCATCTGCTCACCG 60.319 60.000 0.00 0.00 0.00 4.94
664 1422 1.005156 GGCCCGAGATCATCTGCTC 60.005 63.158 0.00 0.00 0.00 4.26
730 1488 2.978010 CCGCTGTTTTGCTCGGGT 60.978 61.111 0.00 0.00 38.35 5.28
844 1603 1.022735 CGCTTAAGTAGAGGAGCCGA 58.977 55.000 4.02 0.00 0.00 5.54
879 1638 1.177401 CGAGAGGTGAGGTGATGTGA 58.823 55.000 0.00 0.00 0.00 3.58
880 1639 0.459237 GCGAGAGGTGAGGTGATGTG 60.459 60.000 0.00 0.00 0.00 3.21
881 1640 1.608717 GGCGAGAGGTGAGGTGATGT 61.609 60.000 0.00 0.00 0.00 3.06
882 1641 1.142748 GGCGAGAGGTGAGGTGATG 59.857 63.158 0.00 0.00 0.00 3.07
883 1642 2.060980 GGGCGAGAGGTGAGGTGAT 61.061 63.158 0.00 0.00 0.00 3.06
911 1670 1.968540 GAAGAAAGGTGGCGCTGCT 60.969 57.895 7.64 0.00 0.00 4.24
912 1671 0.673644 TAGAAGAAAGGTGGCGCTGC 60.674 55.000 7.64 0.00 0.00 5.25
930 1689 3.263489 AGGAGACGATCGAGTTCTGTA 57.737 47.619 24.34 0.00 0.00 2.74
931 1690 2.116827 AGGAGACGATCGAGTTCTGT 57.883 50.000 24.34 0.00 0.00 3.41
932 1691 2.937149 TGTAGGAGACGATCGAGTTCTG 59.063 50.000 24.34 0.00 0.00 3.02
935 1694 2.015587 GGTGTAGGAGACGATCGAGTT 58.984 52.381 24.34 6.28 0.00 3.01
936 1695 1.065636 TGGTGTAGGAGACGATCGAGT 60.066 52.381 24.34 8.01 0.00 4.18
938 1697 1.208776 TCTGGTGTAGGAGACGATCGA 59.791 52.381 24.34 0.00 0.00 3.59
939 1698 1.664873 TCTGGTGTAGGAGACGATCG 58.335 55.000 14.88 14.88 0.00 3.69
940 1699 2.554893 GGATCTGGTGTAGGAGACGATC 59.445 54.545 0.00 0.00 0.00 3.69
941 1700 2.091830 TGGATCTGGTGTAGGAGACGAT 60.092 50.000 0.00 0.00 0.00 3.73
944 1703 1.410882 GCTGGATCTGGTGTAGGAGAC 59.589 57.143 0.00 0.00 0.00 3.36
945 1704 1.781786 GCTGGATCTGGTGTAGGAGA 58.218 55.000 0.00 0.00 0.00 3.71
946 1705 0.387202 CGCTGGATCTGGTGTAGGAG 59.613 60.000 0.00 0.00 0.00 3.69
947 1706 1.676678 GCGCTGGATCTGGTGTAGGA 61.677 60.000 0.00 0.00 0.00 2.94
949 1708 0.249238 GAGCGCTGGATCTGGTGTAG 60.249 60.000 18.48 0.00 0.00 2.74
950 1709 0.684479 AGAGCGCTGGATCTGGTGTA 60.684 55.000 18.48 0.00 37.56 2.90
951 1710 1.954362 GAGAGCGCTGGATCTGGTGT 61.954 60.000 18.48 0.00 39.46 4.16
953 1712 2.430610 GGAGAGCGCTGGATCTGGT 61.431 63.158 18.48 0.00 39.46 4.00
957 1716 0.596082 GTAGAGGAGAGCGCTGGATC 59.404 60.000 18.48 10.26 0.00 3.36
960 1719 0.102120 CAAGTAGAGGAGAGCGCTGG 59.898 60.000 18.48 0.00 0.00 4.85
979 1738 6.028412 ACATGGTGTATGCTGCTTATAGAGC 61.028 44.000 0.00 0.54 45.12 4.09
983 1742 4.815846 CACACATGGTGTATGCTGCTTATA 59.184 41.667 0.00 0.00 45.65 0.98
984 1743 3.628942 CACACATGGTGTATGCTGCTTAT 59.371 43.478 0.00 0.00 45.65 1.73
1056 1815 2.511145 CAGAGGCTCCGCTTGCTC 60.511 66.667 11.71 0.00 0.00 4.26
1176 1938 1.572085 CTTGGTGCTCAGGCGTGAAG 61.572 60.000 10.76 6.09 42.25 3.02
1180 1942 2.214216 TACCTTGGTGCTCAGGCGT 61.214 57.895 2.03 0.00 42.25 5.68
1182 1944 1.377333 GGTACCTTGGTGCTCAGGC 60.377 63.158 4.06 0.00 39.26 4.85
1185 1947 1.003118 GTGATGGTACCTTGGTGCTCA 59.997 52.381 14.36 5.03 0.00 4.26
1186 1948 1.739067 GTGATGGTACCTTGGTGCTC 58.261 55.000 14.36 0.00 0.00 4.26
1205 1986 0.647410 CTTGGCGTGATGCTAGAACG 59.353 55.000 0.00 0.00 45.43 3.95
1212 1993 1.443194 CAAGTGCTTGGCGTGATGC 60.443 57.895 4.13 0.00 45.38 3.91
1225 2006 4.335874 ACAGATAGTACGTAGGAGCAAGTG 59.664 45.833 0.00 0.00 0.00 3.16
1230 2011 2.030981 GGCACAGATAGTACGTAGGAGC 60.031 54.545 0.00 0.00 0.00 4.70
1231 2012 2.553172 GGGCACAGATAGTACGTAGGAG 59.447 54.545 0.00 0.00 0.00 3.69
1232 2013 2.579873 GGGCACAGATAGTACGTAGGA 58.420 52.381 0.00 0.00 0.00 2.94
1233 2014 1.266175 CGGGCACAGATAGTACGTAGG 59.734 57.143 0.00 0.00 0.00 3.18
1234 2015 2.216046 TCGGGCACAGATAGTACGTAG 58.784 52.381 0.00 0.00 0.00 3.51
1236 2017 1.133790 GTTCGGGCACAGATAGTACGT 59.866 52.381 0.00 0.00 29.39 3.57
1238 2019 1.133790 ACGTTCGGGCACAGATAGTAC 59.866 52.381 0.00 0.00 29.39 2.73
1240 2021 1.133790 GTACGTTCGGGCACAGATAGT 59.866 52.381 0.00 0.00 29.39 2.12
1241 2022 1.535437 GGTACGTTCGGGCACAGATAG 60.535 57.143 0.00 0.00 29.39 2.08
1242 2023 0.457035 GGTACGTTCGGGCACAGATA 59.543 55.000 0.00 0.00 29.39 1.98
1297 2078 4.828925 GCTCCTCCTCCGCTGCAC 62.829 72.222 0.00 0.00 0.00 4.57
1304 2090 3.535962 CTGCTCGGCTCCTCCTCC 61.536 72.222 0.00 0.00 0.00 4.30
1562 2360 4.424711 TGGTGGATGAAGCCGGCC 62.425 66.667 26.15 9.73 0.00 6.13
1572 2370 1.327690 ATGTACGACGGCTGGTGGAT 61.328 55.000 0.00 0.00 0.00 3.41
1663 2479 1.678360 CACTTGAGCGTTGATGTTGC 58.322 50.000 0.00 0.00 0.00 4.17
1674 2490 4.327982 TCTATCACATAGGCACTTGAGC 57.672 45.455 0.00 0.00 41.75 4.26
1676 2492 7.839680 TTCTATCTATCACATAGGCACTTGA 57.160 36.000 0.00 0.00 41.75 3.02
1705 2521 9.378551 AGCAATATTACATGTAGAAGAAACGAA 57.621 29.630 5.56 0.00 0.00 3.85
1749 2895 8.041829 AGCAGATCATAATTCATCATAAGCAC 57.958 34.615 0.00 0.00 0.00 4.40
1750 2896 8.631480 AAGCAGATCATAATTCATCATAAGCA 57.369 30.769 0.00 0.00 0.00 3.91
1770 2916 1.283793 CAGTGGCCGTCAAAAGCAG 59.716 57.895 0.00 0.00 0.00 4.24
1773 2919 1.197721 GATGACAGTGGCCGTCAAAAG 59.802 52.381 14.81 0.00 45.91 2.27
1800 2946 0.752658 CACGAGGATGGCTGGTATCA 59.247 55.000 0.00 0.00 0.00 2.15
1801 2947 0.034059 CCACGAGGATGGCTGGTATC 59.966 60.000 0.00 0.00 36.89 2.24
1802 2948 2.136791 CCACGAGGATGGCTGGTAT 58.863 57.895 0.00 0.00 36.89 2.73
1803 2949 3.628989 CCACGAGGATGGCTGGTA 58.371 61.111 0.00 0.00 36.89 3.25
1848 2994 8.603242 ATGTAACTTTTCAGTGTTCGTTAGAT 57.397 30.769 0.00 0.00 31.60 1.98
1901 3093 1.577468 TGCAGTGTCGTTGGTGTTAG 58.423 50.000 0.00 0.00 0.00 2.34
1912 3104 1.003866 GTTGTCTCCGTTTGCAGTGTC 60.004 52.381 0.00 0.00 0.00 3.67
1964 3156 2.522185 ACTTGAGACCATGCTTGCAAT 58.478 42.857 0.00 0.00 0.00 3.56
2007 3201 5.517054 GTCGATGAGTATTCAGAACCAGTTC 59.483 44.000 2.19 2.19 36.61 3.01
2028 3222 3.567576 AGATGTCAGAGTCTTGTGTCG 57.432 47.619 0.00 0.00 0.00 4.35
2039 3233 7.924947 CAGAATCATACTGCTTTAGATGTCAGA 59.075 37.037 0.00 0.00 0.00 3.27
2077 3271 4.184629 GCTGTTATCGGTCAATCTTCACT 58.815 43.478 0.00 0.00 0.00 3.41
2082 3276 4.943705 ACATTTGCTGTTATCGGTCAATCT 59.056 37.500 0.00 0.00 32.90 2.40
2086 3280 3.435327 GTCACATTTGCTGTTATCGGTCA 59.565 43.478 0.00 0.00 35.29 4.02
2087 3281 3.435327 TGTCACATTTGCTGTTATCGGTC 59.565 43.478 0.00 0.00 35.29 4.79
2095 3295 1.682854 CACCCTTGTCACATTTGCTGT 59.317 47.619 0.00 0.00 39.20 4.40
2098 3298 0.319813 GGCACCCTTGTCACATTTGC 60.320 55.000 0.00 0.00 0.00 3.68
2099 3299 0.039256 CGGCACCCTTGTCACATTTG 60.039 55.000 0.00 0.00 0.00 2.32
2101 3301 0.179004 TTCGGCACCCTTGTCACATT 60.179 50.000 0.00 0.00 0.00 2.71
2105 3305 0.106918 AGTTTTCGGCACCCTTGTCA 60.107 50.000 0.00 0.00 0.00 3.58
2106 3306 0.591659 GAGTTTTCGGCACCCTTGTC 59.408 55.000 0.00 0.00 0.00 3.18
2112 3312 2.613506 CCGTGGAGTTTTCGGCACC 61.614 63.158 0.00 0.00 37.90 5.01
2118 3318 2.882761 AGGTTTAAGCCGTGGAGTTTTC 59.117 45.455 2.33 0.00 0.00 2.29
2119 3319 2.940158 AGGTTTAAGCCGTGGAGTTTT 58.060 42.857 2.33 0.00 0.00 2.43
2123 3323 2.178912 TCAAGGTTTAAGCCGTGGAG 57.821 50.000 20.73 3.95 38.32 3.86
2192 3392 0.886490 CCAAGCCATATGTCCGCTCC 60.886 60.000 5.56 0.00 30.92 4.70
2237 3437 1.336240 GCTGTTAGGCACTTTGGCAAG 60.336 52.381 0.00 0.00 46.46 4.01
2258 3458 2.045926 CCCAAGAACGCCAGGGAG 60.046 66.667 0.00 0.00 44.30 4.30
2308 3508 5.772672 TGCCATAGACAACCATTTTAACAGT 59.227 36.000 0.00 0.00 0.00 3.55
2309 3509 6.266168 TGCCATAGACAACCATTTTAACAG 57.734 37.500 0.00 0.00 0.00 3.16
2327 3527 5.477984 AGCGTTATTCATGGATAAATGCCAT 59.522 36.000 20.71 7.82 46.76 4.40
2329 3529 5.376854 AGCGTTATTCATGGATAAATGCC 57.623 39.130 20.71 5.64 31.00 4.40
2330 3530 6.437928 TGAAGCGTTATTCATGGATAAATGC 58.562 36.000 18.30 18.30 34.31 3.56
2387 3588 3.865387 TGGTTTCCCCCTTCCCATAAATA 59.135 43.478 0.00 0.00 0.00 1.40
2427 3628 8.824159 TTTTTCTTTTGTTTTGAGATGTGTCA 57.176 26.923 0.00 0.00 0.00 3.58
2460 3661 8.768955 CATGTAGAGGTATTTGCTCTGATTTAC 58.231 37.037 0.00 0.00 0.00 2.01
2467 3668 6.607600 TGTAGTCATGTAGAGGTATTTGCTCT 59.392 38.462 0.00 0.00 0.00 4.09
2495 3696 5.104776 TGCTACTGATGCTAGAATCTTTGGT 60.105 40.000 12.15 7.98 0.00 3.67
2496 3697 5.363101 TGCTACTGATGCTAGAATCTTTGG 58.637 41.667 12.15 2.28 0.00 3.28
2501 3702 6.686630 AGTACATGCTACTGATGCTAGAATC 58.313 40.000 3.43 3.43 0.00 2.52
2545 3753 5.895636 TGGTCTTTATGATTTCATTGCGT 57.104 34.783 0.00 0.00 37.76 5.24
2547 3755 7.259882 TGACATGGTCTTTATGATTTCATTGC 58.740 34.615 0.00 0.00 34.32 3.56
2561 3782 4.392940 CTGTTCCTTCTTGACATGGTCTT 58.607 43.478 0.00 0.00 33.15 3.01
2565 3786 1.466167 CGCTGTTCCTTCTTGACATGG 59.534 52.381 0.00 0.00 0.00 3.66
2568 3789 0.884704 GCCGCTGTTCCTTCTTGACA 60.885 55.000 0.00 0.00 0.00 3.58
2590 3811 5.139482 CGTGATAATTCAGTGTGTGTGTTG 58.861 41.667 0.00 0.00 30.85 3.33
2595 3816 5.288712 GGAGTACGTGATAATTCAGTGTGTG 59.711 44.000 0.00 0.00 30.85 3.82
2612 3835 0.679002 TTCCGGACAGAGGGAGTACG 60.679 60.000 1.83 0.00 42.81 3.67
2617 3840 2.500098 CAAGTAATTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
2618 3841 2.236395 ACAAGTAATTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
2619 3842 3.522553 GACAAGTAATTCCGGACAGAGG 58.477 50.000 1.83 0.00 0.00 3.69
2620 3843 3.179830 CGACAAGTAATTCCGGACAGAG 58.820 50.000 1.83 0.00 0.00 3.35
2621 3844 2.559668 ACGACAAGTAATTCCGGACAGA 59.440 45.455 1.83 0.00 0.00 3.41
2622 3845 2.955614 ACGACAAGTAATTCCGGACAG 58.044 47.619 1.83 0.00 0.00 3.51
2623 3846 4.517952 TTACGACAAGTAATTCCGGACA 57.482 40.909 1.83 0.00 40.15 4.02
2624 3847 5.406477 ACTTTTACGACAAGTAATTCCGGAC 59.594 40.000 1.83 0.00 44.03 4.79
2625 3848 5.406175 CACTTTTACGACAAGTAATTCCGGA 59.594 40.000 0.00 0.00 44.03 5.14
2626 3849 5.390145 CCACTTTTACGACAAGTAATTCCGG 60.390 44.000 0.00 0.00 44.03 5.14
2627 3850 5.406175 TCCACTTTTACGACAAGTAATTCCG 59.594 40.000 0.00 0.00 44.03 4.30
2628 3851 6.790285 TCCACTTTTACGACAAGTAATTCC 57.210 37.500 0.00 0.00 44.03 3.01
2629 3852 8.025243 TCATCCACTTTTACGACAAGTAATTC 57.975 34.615 0.00 0.00 44.03 2.17
2630 3853 7.972832 TCATCCACTTTTACGACAAGTAATT 57.027 32.000 0.00 0.00 44.03 1.40
2631 3854 7.972832 TTCATCCACTTTTACGACAAGTAAT 57.027 32.000 0.00 0.00 44.03 1.89
2632 3855 7.876068 AGATTCATCCACTTTTACGACAAGTAA 59.124 33.333 0.00 0.00 43.05 2.24
2633 3856 7.383687 AGATTCATCCACTTTTACGACAAGTA 58.616 34.615 0.00 0.00 32.48 2.24
2634 3857 6.231211 AGATTCATCCACTTTTACGACAAGT 58.769 36.000 0.00 0.00 34.67 3.16
2635 3858 6.727824 AGATTCATCCACTTTTACGACAAG 57.272 37.500 0.00 0.00 0.00 3.16
2636 3859 7.544566 GTCTAGATTCATCCACTTTTACGACAA 59.455 37.037 0.00 0.00 0.00 3.18
2637 3860 7.033791 GTCTAGATTCATCCACTTTTACGACA 58.966 38.462 0.00 0.00 0.00 4.35
2638 3861 7.033791 TGTCTAGATTCATCCACTTTTACGAC 58.966 38.462 0.00 0.00 0.00 4.34
2639 3862 7.165460 TGTCTAGATTCATCCACTTTTACGA 57.835 36.000 0.00 0.00 0.00 3.43
2640 3863 9.698309 ATATGTCTAGATTCATCCACTTTTACG 57.302 33.333 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.