Multiple sequence alignment - TraesCS2A01G108400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G108400 chr2A 100.000 3339 0 0 1 3339 60284998 60281660 0.000000e+00 6167.0
1 TraesCS2A01G108400 chr2A 96.675 1203 39 1 1380 2582 60760366 60759165 0.000000e+00 1999.0
2 TraesCS2A01G108400 chr2A 90.021 972 85 10 1441 2406 59718141 59719106 0.000000e+00 1247.0
3 TraesCS2A01G108400 chr2A 97.127 731 21 0 2609 3339 33690442 33689712 0.000000e+00 1234.0
4 TraesCS2A01G108400 chr2A 92.733 344 19 3 867 1209 59717369 59717707 2.990000e-135 492.0
5 TraesCS2A01G108400 chr2A 89.356 404 25 9 337 724 60761708 60761307 2.990000e-135 492.0
6 TraesCS2A01G108400 chr2A 83.820 445 49 14 859 1293 60761290 60760859 5.190000e-108 401.0
7 TraesCS2A01G108400 chr2A 98.561 139 2 0 722 860 587739876 587740014 2.570000e-61 246.0
8 TraesCS2A01G108400 chr2A 97.203 143 3 1 722 864 543179606 543179747 1.200000e-59 241.0
9 TraesCS2A01G108400 chr2A 96.226 53 0 2 1342 1393 60760733 60760682 5.940000e-13 86.1
10 TraesCS2A01G108400 chr2A 89.062 64 3 1 2407 2470 59719126 59719185 3.570000e-10 76.8
11 TraesCS2A01G108400 chr2D 96.247 1279 35 4 1342 2607 60167159 60165881 0.000000e+00 2084.0
12 TraesCS2A01G108400 chr2D 87.512 1049 102 21 1361 2400 59724496 59725524 0.000000e+00 1184.0
13 TraesCS2A01G108400 chr2D 89.583 384 33 4 2029 2406 59836613 59836995 6.480000e-132 481.0
14 TraesCS2A01G108400 chr2D 87.990 408 27 9 337 724 60168140 60167735 2.350000e-126 462.0
15 TraesCS2A01G108400 chr2D 90.988 344 25 3 867 1209 59723802 59724140 3.040000e-125 459.0
16 TraesCS2A01G108400 chr2D 84.944 445 42 16 859 1294 60167718 60167290 8.560000e-116 427.0
17 TraesCS2A01G108400 chr2D 95.161 62 3 0 867 928 59830740 59830801 7.620000e-17 99.0
18 TraesCS2A01G108400 chr2D 87.500 64 4 1 2408 2471 59837016 59837075 1.660000e-08 71.3
19 TraesCS2A01G108400 chr2B 95.128 1170 50 3 1441 2608 94251106 94249942 0.000000e+00 1838.0
20 TraesCS2A01G108400 chr2B 91.875 1280 87 14 1342 2612 94090067 94088796 0.000000e+00 1772.0
21 TraesCS2A01G108400 chr2B 90.336 952 84 5 1397 2344 94099425 94098478 0.000000e+00 1242.0
22 TraesCS2A01G108400 chr2B 88.474 963 92 13 1454 2406 93408785 93409738 0.000000e+00 1146.0
23 TraesCS2A01G108400 chr2B 92.486 732 43 6 2610 3339 215943061 215942340 0.000000e+00 1037.0
24 TraesCS2A01G108400 chr2B 92.355 654 39 6 2613 3266 254291076 254291718 0.000000e+00 920.0
25 TraesCS2A01G108400 chr2B 86.385 852 99 12 1565 2407 93109161 93110004 0.000000e+00 915.0
26 TraesCS2A01G108400 chr2B 89.125 377 29 7 862 1235 93407973 93408340 3.040000e-125 459.0
27 TraesCS2A01G108400 chr2B 87.469 407 29 13 337 724 94091121 94090718 1.830000e-122 449.0
28 TraesCS2A01G108400 chr2B 90.258 349 24 7 867 1207 94251863 94251517 6.570000e-122 448.0
29 TraesCS2A01G108400 chr2B 89.244 344 31 4 867 1209 93108354 93108692 3.080000e-115 425.0
30 TraesCS2A01G108400 chr2B 89.441 322 21 9 295 611 94102199 94101886 8.680000e-106 394.0
31 TraesCS2A01G108400 chr2B 92.776 263 19 0 1 263 174347613 174347351 6.760000e-102 381.0
32 TraesCS2A01G108400 chr2B 98.561 139 2 0 722 860 597223283 597223421 2.570000e-61 246.0
33 TraesCS2A01G108400 chr2B 98.561 139 2 0 722 860 697201202 697201064 2.570000e-61 246.0
34 TraesCS2A01G108400 chr2B 97.143 70 2 0 859 928 94090701 94090632 5.850000e-23 119.0
35 TraesCS2A01G108400 chr2B 86.275 102 8 3 1182 1282 94100228 94100132 4.560000e-19 106.0
36 TraesCS2A01G108400 chr2B 90.164 61 2 1 2411 2471 93409770 93409826 3.570000e-10 76.8
37 TraesCS2A01G108400 chr2B 87.692 65 4 1 2407 2471 93110023 93110083 4.620000e-09 73.1
38 TraesCS2A01G108400 chr3A 97.253 728 20 0 2612 3339 646275297 646276024 0.000000e+00 1234.0
39 TraesCS2A01G108400 chr3A 87.875 734 52 11 2609 3339 51409106 51409805 0.000000e+00 828.0
40 TraesCS2A01G108400 chr3A 98.561 139 2 0 722 860 456910927 456910789 2.570000e-61 246.0
41 TraesCS2A01G108400 chr4A 96.708 729 24 0 2611 3339 487884501 487883773 0.000000e+00 1214.0
42 TraesCS2A01G108400 chr4A 85.985 264 8 7 1 263 706187159 706187394 4.270000e-64 255.0
43 TraesCS2A01G108400 chr4A 76.842 190 36 8 1026 1211 191375780 191375965 2.120000e-17 100.0
44 TraesCS2A01G108400 chr7B 91.907 729 48 6 2613 3339 477426673 477425954 0.000000e+00 1009.0
45 TraesCS2A01G108400 chr7B 98.561 139 2 0 722 860 717329044 717328906 2.570000e-61 246.0
46 TraesCS2A01G108400 chr3B 92.764 691 37 8 2651 3339 94873308 94872629 0.000000e+00 987.0
47 TraesCS2A01G108400 chr5B 94.909 275 11 3 1 273 535220403 535220130 8.560000e-116 427.0
48 TraesCS2A01G108400 chr1A 92.881 295 20 1 1 294 552833811 552834105 8.560000e-116 427.0
49 TraesCS2A01G108400 chr1A 94.526 274 14 1 1 273 513688278 513688005 3.980000e-114 422.0
50 TraesCS2A01G108400 chr1A 94.526 274 14 1 1 273 579725136 579724863 3.980000e-114 422.0
51 TraesCS2A01G108400 chr1A 75.737 441 82 16 1780 2203 299267823 299268255 7.310000e-47 198.0
52 TraesCS2A01G108400 chr5A 94.526 274 14 1 1 273 510267917 510267644 3.980000e-114 422.0
53 TraesCS2A01G108400 chr5A 93.796 274 16 1 1 273 131784424 131784697 8.620000e-111 411.0
54 TraesCS2A01G108400 chr5A 93.985 266 16 0 1 266 565609594 565609859 1.440000e-108 403.0
55 TraesCS2A01G108400 chr5A 88.235 255 19 1 6 260 36797236 36797479 9.060000e-76 294.0
56 TraesCS2A01G108400 chrUn 91.973 299 21 3 1 297 8360032 8359735 1.850000e-112 416.0
57 TraesCS2A01G108400 chr4B 91.864 295 23 1 1 294 667270214 667269920 8.620000e-111 411.0
58 TraesCS2A01G108400 chr4B 76.585 410 88 7 1774 2179 664052261 664052666 5.610000e-53 219.0
59 TraesCS2A01G108400 chr7A 91.554 296 22 3 1 294 697069520 697069226 4.010000e-109 405.0
60 TraesCS2A01G108400 chr7A 93.173 249 15 2 1 248 25710707 25710460 6.810000e-97 364.0
61 TraesCS2A01G108400 chr7A 95.455 154 6 1 722 875 84689762 84689610 9.250000e-61 244.0
62 TraesCS2A01G108400 chr6D 78.309 544 72 24 2617 3124 463854888 463854355 3.240000e-80 309.0
63 TraesCS2A01G108400 chr6B 98.561 139 2 0 722 860 712191331 712191469 2.570000e-61 246.0
64 TraesCS2A01G108400 chr6A 97.872 141 3 0 722 862 599872520 599872380 9.250000e-61 244.0
65 TraesCS2A01G108400 chr1D 75.967 362 64 12 1858 2203 247859565 247859211 7.410000e-37 165.0
66 TraesCS2A01G108400 chr7D 73.152 257 59 9 2065 2316 75948476 75948727 2.130000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G108400 chr2A 60281660 60284998 3338 True 6167.000000 6167 100.000000 1 3339 1 chr2A.!!$R2 3338
1 TraesCS2A01G108400 chr2A 33689712 33690442 730 True 1234.000000 1234 97.127000 2609 3339 1 chr2A.!!$R1 730
2 TraesCS2A01G108400 chr2A 60759165 60761708 2543 True 744.525000 1999 91.519250 337 2582 4 chr2A.!!$R3 2245
3 TraesCS2A01G108400 chr2A 59717369 59719185 1816 False 605.266667 1247 90.605333 867 2470 3 chr2A.!!$F3 1603
4 TraesCS2A01G108400 chr2D 60165881 60168140 2259 True 991.000000 2084 89.727000 337 2607 3 chr2D.!!$R1 2270
5 TraesCS2A01G108400 chr2D 59723802 59725524 1722 False 821.500000 1184 89.250000 867 2400 2 chr2D.!!$F2 1533
6 TraesCS2A01G108400 chr2B 94249942 94251863 1921 True 1143.000000 1838 92.693000 867 2608 2 chr2B.!!$R6 1741
7 TraesCS2A01G108400 chr2B 215942340 215943061 721 True 1037.000000 1037 92.486000 2610 3339 1 chr2B.!!$R2 729
8 TraesCS2A01G108400 chr2B 254291076 254291718 642 False 920.000000 920 92.355000 2613 3266 1 chr2B.!!$F1 653
9 TraesCS2A01G108400 chr2B 94088796 94091121 2325 True 780.000000 1772 92.162333 337 2612 3 chr2B.!!$R4 2275
10 TraesCS2A01G108400 chr2B 94098478 94102199 3721 True 580.666667 1242 88.684000 295 2344 3 chr2B.!!$R5 2049
11 TraesCS2A01G108400 chr2B 93407973 93409826 1853 False 560.600000 1146 89.254333 862 2471 3 chr2B.!!$F4 1609
12 TraesCS2A01G108400 chr2B 93108354 93110083 1729 False 471.033333 915 87.773667 867 2471 3 chr2B.!!$F3 1604
13 TraesCS2A01G108400 chr3A 646275297 646276024 727 False 1234.000000 1234 97.253000 2612 3339 1 chr3A.!!$F2 727
14 TraesCS2A01G108400 chr3A 51409106 51409805 699 False 828.000000 828 87.875000 2609 3339 1 chr3A.!!$F1 730
15 TraesCS2A01G108400 chr4A 487883773 487884501 728 True 1214.000000 1214 96.708000 2611 3339 1 chr4A.!!$R1 728
16 TraesCS2A01G108400 chr7B 477425954 477426673 719 True 1009.000000 1009 91.907000 2613 3339 1 chr7B.!!$R1 726
17 TraesCS2A01G108400 chr3B 94872629 94873308 679 True 987.000000 987 92.764000 2651 3339 1 chr3B.!!$R1 688
18 TraesCS2A01G108400 chr6D 463854355 463854888 533 True 309.000000 309 78.309000 2617 3124 1 chr6D.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 286 0.031585 GTCGGCAACCCCAGTTTTTC 59.968 55.0 0.00 0.0 32.45 2.29 F
287 288 0.031994 CGGCAACCCCAGTTTTTCTG 59.968 55.0 0.00 0.0 43.27 3.02 F
769 793 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.0 4.96 0.0 31.08 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1735 4490 0.171903 TCAGCTAGTTTACCGTCGCC 59.828 55.000 0.00 0.00 0.00 5.54 R
2019 4783 2.184322 GAGATGTCGCGAAGGCCA 59.816 61.111 12.06 4.64 35.02 5.36 R
2708 5514 1.780503 GCAAGGTTAGGATTGCCCAT 58.219 50.000 0.00 0.00 44.76 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.815211 CCACAGATGTGCCGACGG 60.815 66.667 10.29 10.29 44.34 4.79
34 35 4.747529 GCCGCCGTTAACTCCCGT 62.748 66.667 3.71 0.00 0.00 5.28
35 36 2.507769 CCGCCGTTAACTCCCGTC 60.508 66.667 3.71 0.00 0.00 4.79
36 37 2.877582 CGCCGTTAACTCCCGTCG 60.878 66.667 3.71 0.00 0.00 5.12
37 38 2.507769 GCCGTTAACTCCCGTCGG 60.508 66.667 3.60 3.60 43.37 4.79
38 39 2.507769 CCGTTAACTCCCGTCGGC 60.508 66.667 5.50 0.00 35.01 5.54
39 40 2.877582 CGTTAACTCCCGTCGGCG 60.878 66.667 0.29 0.29 37.95 6.46
40 41 2.259511 GTTAACTCCCGTCGGCGT 59.740 61.111 9.28 1.83 36.15 5.68
41 42 1.506262 GTTAACTCCCGTCGGCGTA 59.494 57.895 9.28 0.00 36.15 4.42
42 43 0.524180 GTTAACTCCCGTCGGCGTAG 60.524 60.000 9.28 8.17 36.15 3.51
43 44 1.656818 TTAACTCCCGTCGGCGTAGG 61.657 60.000 9.28 11.61 36.15 3.18
44 45 2.535485 TAACTCCCGTCGGCGTAGGA 62.535 60.000 20.97 16.94 36.15 2.94
45 46 2.905880 CTCCCGTCGGCGTAGGAT 60.906 66.667 20.97 0.00 36.15 3.24
46 47 2.903855 TCCCGTCGGCGTAGGATC 60.904 66.667 20.97 0.00 36.15 3.36
47 48 3.214123 CCCGTCGGCGTAGGATCA 61.214 66.667 20.97 0.00 36.15 2.92
48 49 2.777972 CCCGTCGGCGTAGGATCAA 61.778 63.158 20.97 0.00 36.15 2.57
49 50 1.588139 CCGTCGGCGTAGGATCAAC 60.588 63.158 9.28 0.00 36.15 3.18
50 51 1.937846 CGTCGGCGTAGGATCAACG 60.938 63.158 6.85 13.72 43.12 4.10
55 56 3.993103 CGTAGGATCAACGCCGTC 58.007 61.111 6.87 0.00 33.04 4.79
56 57 1.138036 CGTAGGATCAACGCCGTCA 59.862 57.895 6.87 0.00 33.04 4.35
57 58 0.457166 CGTAGGATCAACGCCGTCAA 60.457 55.000 6.87 0.00 33.04 3.18
58 59 1.717194 GTAGGATCAACGCCGTCAAA 58.283 50.000 0.00 0.00 0.00 2.69
59 60 2.277084 GTAGGATCAACGCCGTCAAAT 58.723 47.619 0.00 0.00 0.00 2.32
60 61 1.086696 AGGATCAACGCCGTCAAATG 58.913 50.000 0.00 0.00 0.00 2.32
61 62 0.098728 GGATCAACGCCGTCAAATGG 59.901 55.000 0.00 0.00 0.00 3.16
62 63 0.802494 GATCAACGCCGTCAAATGGT 59.198 50.000 0.00 0.00 0.00 3.55
63 64 0.802494 ATCAACGCCGTCAAATGGTC 59.198 50.000 0.00 0.00 0.00 4.02
64 65 0.533085 TCAACGCCGTCAAATGGTCA 60.533 50.000 0.00 0.00 0.00 4.02
65 66 0.309302 CAACGCCGTCAAATGGTCAA 59.691 50.000 0.00 0.00 0.00 3.18
66 67 0.309612 AACGCCGTCAAATGGTCAAC 59.690 50.000 0.00 0.00 0.00 3.18
67 68 1.154488 CGCCGTCAAATGGTCAACG 60.154 57.895 0.00 0.00 35.01 4.10
68 69 1.442017 GCCGTCAAATGGTCAACGC 60.442 57.895 0.00 0.00 33.95 4.84
69 70 1.852067 GCCGTCAAATGGTCAACGCT 61.852 55.000 0.00 0.00 33.95 5.07
70 71 0.110238 CCGTCAAATGGTCAACGCTG 60.110 55.000 0.00 0.00 33.95 5.18
71 72 0.865111 CGTCAAATGGTCAACGCTGA 59.135 50.000 0.00 0.00 0.00 4.26
78 79 4.980805 GTCAACGCTGACCGGGCA 62.981 66.667 11.16 11.16 45.41 5.36
79 80 4.680237 TCAACGCTGACCGGGCAG 62.680 66.667 34.13 34.13 42.52 4.85
94 95 2.854032 CAGGTGGGCCCGGGATAT 60.854 66.667 29.31 0.00 38.74 1.63
95 96 2.854032 AGGTGGGCCCGGGATATG 60.854 66.667 29.31 0.00 38.74 1.78
96 97 4.660938 GGTGGGCCCGGGATATGC 62.661 72.222 29.31 8.14 0.00 3.14
97 98 4.660938 GTGGGCCCGGGATATGCC 62.661 72.222 29.31 18.34 44.59 4.40
100 101 4.699522 GGCCCGGGATATGCCGAC 62.700 72.222 34.24 24.64 37.63 4.79
102 103 4.373116 CCCGGGATATGCCGACGG 62.373 72.222 34.24 23.98 40.11 4.79
112 113 3.681835 GCCGACGGCCGATCCTAT 61.682 66.667 35.90 8.10 44.06 2.57
113 114 2.258591 CCGACGGCCGATCCTATG 59.741 66.667 35.90 12.24 41.76 2.23
114 115 2.430921 CGACGGCCGATCCTATGC 60.431 66.667 35.90 8.88 41.76 3.14
115 116 2.048127 GACGGCCGATCCTATGCC 60.048 66.667 35.90 4.89 41.85 4.40
118 119 2.048127 GGCCGATCCTATGCCGAC 60.048 66.667 0.00 0.00 35.08 4.79
119 120 2.734591 GCCGATCCTATGCCGACA 59.265 61.111 0.00 0.00 0.00 4.35
120 121 1.373497 GCCGATCCTATGCCGACAG 60.373 63.158 0.00 0.00 0.00 3.51
121 122 1.290324 CCGATCCTATGCCGACAGG 59.710 63.158 0.00 0.00 41.62 4.00
139 140 3.117372 CCCTGTAGGCGTACCTCG 58.883 66.667 13.68 2.97 46.34 4.63
140 141 2.487532 CCCTGTAGGCGTACCTCGG 61.488 68.421 13.68 10.83 46.34 4.63
141 142 2.487532 CCTGTAGGCGTACCTCGGG 61.488 68.421 13.68 7.20 46.34 5.14
142 143 3.135056 CTGTAGGCGTACCTCGGGC 62.135 68.421 13.68 0.00 46.34 6.13
143 144 3.142838 GTAGGCGTACCTCGGGCA 61.143 66.667 5.22 0.00 46.34 5.36
144 145 2.831742 TAGGCGTACCTCGGGCAG 60.832 66.667 0.00 0.00 46.34 4.85
145 146 3.650298 TAGGCGTACCTCGGGCAGT 62.650 63.158 0.00 0.00 46.34 4.40
146 147 4.509737 GGCGTACCTCGGGCAGTC 62.510 72.222 0.00 0.00 40.26 3.51
147 148 4.509737 GCGTACCTCGGGCAGTCC 62.510 72.222 0.00 0.00 40.26 3.85
169 170 2.027751 GGCCTCGTCTATGCCGAC 59.972 66.667 0.00 0.00 35.08 4.79
189 190 2.343758 CCCCGTCGGCATAGATGG 59.656 66.667 5.50 7.19 44.79 3.51
193 194 3.894257 CGTCGGCATAGATGGATGT 57.106 52.632 0.00 0.00 0.00 3.06
195 196 3.510388 CGTCGGCATAGATGGATGTAT 57.490 47.619 0.00 0.00 0.00 2.29
196 197 3.182182 CGTCGGCATAGATGGATGTATG 58.818 50.000 0.45 0.45 37.17 2.39
202 203 3.182182 CATAGATGGATGTATGCCGACG 58.818 50.000 0.00 0.00 29.07 5.12
203 204 0.318441 AGATGGATGTATGCCGACGG 59.682 55.000 10.29 10.29 0.00 4.79
213 214 3.078560 GCCGACGGCTTTTCTACG 58.921 61.111 31.30 0.00 46.69 3.51
214 215 3.078560 CCGACGGCTTTTCTACGC 58.921 61.111 0.00 0.00 0.00 4.42
215 216 2.450345 CCGACGGCTTTTCTACGCC 61.450 63.158 0.00 0.00 42.86 5.68
216 217 1.445582 CGACGGCTTTTCTACGCCT 60.446 57.895 0.00 0.00 44.11 5.52
217 218 0.179156 CGACGGCTTTTCTACGCCTA 60.179 55.000 0.00 0.00 44.11 3.93
218 219 1.275505 GACGGCTTTTCTACGCCTAC 58.724 55.000 0.00 0.00 44.11 3.18
219 220 0.457337 ACGGCTTTTCTACGCCTACG 60.457 55.000 0.00 0.00 44.11 3.51
220 221 1.143969 CGGCTTTTCTACGCCTACGG 61.144 60.000 0.00 0.00 46.04 4.02
221 222 1.426816 GGCTTTTCTACGCCTACGGC 61.427 60.000 0.00 0.00 46.75 5.68
231 232 1.371558 GCCTACGGCCTATCCTTGG 59.628 63.158 0.00 0.00 44.06 3.61
237 238 2.280186 GCCTATCCTTGGCCGTCG 60.280 66.667 0.00 0.00 44.32 5.12
238 239 2.421739 CCTATCCTTGGCCGTCGG 59.578 66.667 6.99 6.99 0.00 4.79
249 250 3.138625 CCGTCGGCATAGGTCCAT 58.861 61.111 0.00 0.00 0.00 3.41
250 251 2.347630 CCGTCGGCATAGGTCCATA 58.652 57.895 0.00 0.00 0.00 2.74
251 252 0.243907 CCGTCGGCATAGGTCCATAG 59.756 60.000 0.00 0.00 0.00 2.23
252 253 1.244816 CGTCGGCATAGGTCCATAGA 58.755 55.000 0.00 0.00 0.00 1.98
253 254 1.819288 CGTCGGCATAGGTCCATAGAT 59.181 52.381 0.00 0.00 0.00 1.98
254 255 2.416027 CGTCGGCATAGGTCCATAGATG 60.416 54.545 0.00 0.00 0.00 2.90
255 256 1.550524 TCGGCATAGGTCCATAGATGC 59.449 52.381 8.72 8.72 43.19 3.91
257 258 2.015736 GCATAGGTCCATAGATGCCG 57.984 55.000 6.75 0.00 39.00 5.69
258 259 1.550524 GCATAGGTCCATAGATGCCGA 59.449 52.381 6.75 0.00 39.00 5.54
259 260 2.675317 GCATAGGTCCATAGATGCCGAC 60.675 54.545 6.75 0.00 39.00 4.79
260 261 1.244816 TAGGTCCATAGATGCCGACG 58.755 55.000 0.00 0.00 0.00 5.12
261 262 1.006102 GGTCCATAGATGCCGACGG 60.006 63.158 10.29 10.29 0.00 4.79
262 263 1.006102 GTCCATAGATGCCGACGGG 60.006 63.158 17.22 0.00 0.00 5.28
263 264 2.207229 TCCATAGATGCCGACGGGG 61.207 63.158 17.22 6.38 39.58 5.73
264 265 2.343758 CATAGATGCCGACGGGGG 59.656 66.667 17.22 0.00 35.78 5.40
282 283 2.593436 CGTCGGCAACCCCAGTTT 60.593 61.111 0.00 0.00 32.45 2.66
283 284 2.190841 CGTCGGCAACCCCAGTTTT 61.191 57.895 0.00 0.00 32.45 2.43
284 285 1.730451 CGTCGGCAACCCCAGTTTTT 61.730 55.000 0.00 0.00 32.45 1.94
285 286 0.031585 GTCGGCAACCCCAGTTTTTC 59.968 55.000 0.00 0.00 32.45 2.29
286 287 0.106419 TCGGCAACCCCAGTTTTTCT 60.106 50.000 0.00 0.00 32.45 2.52
287 288 0.031994 CGGCAACCCCAGTTTTTCTG 59.968 55.000 0.00 0.00 43.27 3.02
309 310 3.242804 GGTAGTGTACGTCTCTGCAGATC 60.243 52.174 18.63 12.49 0.00 2.75
314 315 3.374367 TGTACGTCTCTGCAGATCAGTAC 59.626 47.826 29.26 29.26 43.32 2.73
320 321 3.771479 TCTCTGCAGATCAGTACACCATT 59.229 43.478 18.63 0.00 43.32 3.16
334 335 9.642343 TCAGTACACCATTCAGTATAGTATCTT 57.358 33.333 0.00 0.00 0.00 2.40
335 336 9.900710 CAGTACACCATTCAGTATAGTATCTTC 57.099 37.037 0.00 0.00 0.00 2.87
363 367 5.112220 TGTCTTCATTTGCACATCTCAAC 57.888 39.130 0.00 0.00 0.00 3.18
369 373 2.636647 TTGCACATCTCAACCACTCA 57.363 45.000 0.00 0.00 0.00 3.41
375 379 4.715896 CACATCTCAACCACTCAAAATCG 58.284 43.478 0.00 0.00 0.00 3.34
458 462 4.783055 ACCTGTTAACAACCACATGTGTA 58.217 39.130 23.79 7.04 32.81 2.90
459 463 5.194432 ACCTGTTAACAACCACATGTGTAA 58.806 37.500 23.79 12.56 32.81 2.41
489 493 3.458189 AGAATTATTTCGCTCGGACAGG 58.542 45.455 0.00 0.00 36.93 4.00
490 494 1.583054 ATTATTTCGCTCGGACAGGC 58.417 50.000 0.00 0.00 0.00 4.85
491 495 0.248012 TTATTTCGCTCGGACAGGCA 59.752 50.000 0.00 0.00 0.00 4.75
543 559 7.510343 CCCATTTCCCATCTCCAACTAATATTT 59.490 37.037 0.00 0.00 0.00 1.40
642 666 3.773860 TTGTTCATTGTCGTTGCACTT 57.226 38.095 0.00 0.00 0.00 3.16
724 748 7.324354 ACCACTAAAAATTAAACAGTGTCGT 57.676 32.000 0.00 0.00 35.85 4.34
725 749 8.436046 ACCACTAAAAATTAAACAGTGTCGTA 57.564 30.769 0.00 0.00 35.85 3.43
726 750 8.891720 ACCACTAAAAATTAAACAGTGTCGTAA 58.108 29.630 0.00 0.00 35.85 3.18
727 751 9.719279 CCACTAAAAATTAAACAGTGTCGTAAA 57.281 29.630 0.00 0.00 35.85 2.01
734 758 9.878599 AAATTAAACAGTGTCGTAAATCTCAAG 57.121 29.630 0.00 0.00 0.00 3.02
736 760 8.827177 TTAAACAGTGTCGTAAATCTCAAGAT 57.173 30.769 0.00 0.00 36.07 2.40
737 761 6.712241 AACAGTGTCGTAAATCTCAAGATG 57.288 37.500 0.00 0.00 34.49 2.90
738 762 6.025749 ACAGTGTCGTAAATCTCAAGATGA 57.974 37.500 0.00 0.00 34.49 2.92
739 763 6.634805 ACAGTGTCGTAAATCTCAAGATGAT 58.365 36.000 0.00 0.00 34.49 2.45
740 764 7.772166 ACAGTGTCGTAAATCTCAAGATGATA 58.228 34.615 0.00 0.00 34.49 2.15
741 765 8.417106 ACAGTGTCGTAAATCTCAAGATGATAT 58.583 33.333 0.00 0.00 34.49 1.63
742 766 8.697960 CAGTGTCGTAAATCTCAAGATGATATG 58.302 37.037 0.00 0.00 34.49 1.78
743 767 7.383572 AGTGTCGTAAATCTCAAGATGATATGC 59.616 37.037 0.00 0.00 34.49 3.14
744 768 6.646653 TGTCGTAAATCTCAAGATGATATGCC 59.353 38.462 0.00 0.00 34.49 4.40
745 769 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
746 770 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
747 771 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
748 772 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
749 773 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
750 774 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
751 775 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
752 776 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
753 777 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
754 778 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
755 779 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
756 780 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
757 781 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
758 782 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
759 783 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
760 784 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
761 785 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
762 786 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
763 787 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
764 788 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
765 789 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
766 790 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
767 791 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
768 792 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
769 793 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
770 794 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
771 795 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
772 796 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
773 797 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
774 798 1.457643 TCGGAGGTGCTCATAGGGG 60.458 63.158 0.00 0.00 31.08 4.79
775 799 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
776 800 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
777 801 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
778 802 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
779 803 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
780 804 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
781 805 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
782 806 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
783 807 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
784 808 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
785 809 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
786 810 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
787 811 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
788 812 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
789 813 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
790 814 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
791 815 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
792 816 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
795 819 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
796 820 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
797 821 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
798 822 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
799 823 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
800 824 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
801 825 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
802 826 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
803 827 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
804 828 1.024579 GTGTGTGCGTTCATAGGGGG 61.025 60.000 0.00 0.00 0.00 5.40
818 842 2.510906 GGGGGAGTGTATGCGCAT 59.489 61.111 28.23 28.23 33.47 4.73
819 843 1.893808 GGGGGAGTGTATGCGCATG 60.894 63.158 32.48 0.00 33.47 4.06
820 844 1.153168 GGGGAGTGTATGCGCATGT 60.153 57.895 32.48 11.40 31.98 3.21
821 845 0.105964 GGGGAGTGTATGCGCATGTA 59.894 55.000 32.48 17.97 31.98 2.29
822 846 1.270839 GGGGAGTGTATGCGCATGTAT 60.271 52.381 32.48 15.41 31.98 2.29
823 847 2.028476 GGGGAGTGTATGCGCATGTATA 60.028 50.000 32.48 10.12 31.98 1.47
824 848 3.369471 GGGGAGTGTATGCGCATGTATAT 60.369 47.826 32.48 14.31 31.98 0.86
825 849 3.618594 GGGAGTGTATGCGCATGTATATG 59.381 47.826 32.48 0.00 37.36 1.78
826 850 4.494484 GGAGTGTATGCGCATGTATATGA 58.506 43.478 32.48 8.02 36.36 2.15
827 851 4.564372 GGAGTGTATGCGCATGTATATGAG 59.436 45.833 32.48 0.87 36.36 2.90
833 857 2.498961 CGCATGTATATGAGCGCTTG 57.501 50.000 13.26 3.84 43.80 4.01
834 858 1.794701 CGCATGTATATGAGCGCTTGT 59.205 47.619 13.26 5.98 43.80 3.16
835 859 2.410646 CGCATGTATATGAGCGCTTGTG 60.411 50.000 13.26 5.93 43.80 3.33
836 860 2.545526 GCATGTATATGAGCGCTTGTGT 59.454 45.455 13.26 4.27 36.36 3.72
837 861 3.363378 GCATGTATATGAGCGCTTGTGTC 60.363 47.826 13.26 0.00 36.36 3.67
838 862 3.801114 TGTATATGAGCGCTTGTGTCT 57.199 42.857 13.26 0.00 0.00 3.41
839 863 3.447742 TGTATATGAGCGCTTGTGTCTG 58.552 45.455 13.26 0.00 0.00 3.51
840 864 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
841 865 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
842 866 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
843 867 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
844 868 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
845 869 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
846 870 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
847 871 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
848 872 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
849 873 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
850 874 2.670414 GCTTGTGTCTGTACTGATGCTC 59.330 50.000 5.69 0.00 0.00 4.26
851 875 3.862264 GCTTGTGTCTGTACTGATGCTCA 60.862 47.826 5.69 0.00 0.00 4.26
852 876 4.309933 CTTGTGTCTGTACTGATGCTCAA 58.690 43.478 5.69 6.69 0.00 3.02
853 877 4.335400 TGTGTCTGTACTGATGCTCAAA 57.665 40.909 5.69 0.00 0.00 2.69
854 878 4.702831 TGTGTCTGTACTGATGCTCAAAA 58.297 39.130 5.69 0.00 0.00 2.44
855 879 5.122519 TGTGTCTGTACTGATGCTCAAAAA 58.877 37.500 5.69 0.00 0.00 1.94
982 1040 1.602851 GCCTGCATGCATACAGAAGAG 59.397 52.381 25.62 11.59 35.90 2.85
989 1047 4.744137 GCATGCATACAGAAGAGTACTGAG 59.256 45.833 14.21 0.00 38.55 3.35
991 1049 4.600062 TGCATACAGAAGAGTACTGAGGA 58.400 43.478 0.00 0.00 38.55 3.71
1030 1088 1.301244 CTGTCGGTGCTGTTGCTCT 60.301 57.895 0.00 0.00 40.48 4.09
1063 1127 3.479269 CGTCCTCGGCGCAACTTC 61.479 66.667 10.83 0.00 0.00 3.01
1122 1191 1.806496 CCATCATCAGGAGGGGTGTA 58.194 55.000 0.00 0.00 43.81 2.90
1125 1194 0.042581 TCATCAGGAGGGGTGTAGCA 59.957 55.000 0.00 0.00 0.00 3.49
1217 2610 2.264455 AGCAAGTCCCTCTCACTCATT 58.736 47.619 0.00 0.00 0.00 2.57
1239 2636 6.736110 TTGTGTCCCTTTACTTACTACTGT 57.264 37.500 0.00 0.00 0.00 3.55
1240 2637 7.838079 TTGTGTCCCTTTACTTACTACTGTA 57.162 36.000 0.00 0.00 0.00 2.74
1241 2638 7.219484 TGTGTCCCTTTACTTACTACTGTAC 57.781 40.000 0.00 0.00 0.00 2.90
1242 2639 6.209391 TGTGTCCCTTTACTTACTACTGTACC 59.791 42.308 0.00 0.00 0.00 3.34
1243 2640 6.209391 GTGTCCCTTTACTTACTACTGTACCA 59.791 42.308 0.00 0.00 0.00 3.25
1246 2643 8.409371 GTCCCTTTACTTACTACTGTACCATAC 58.591 40.741 0.00 0.00 0.00 2.39
1282 2840 7.310664 TCTATTGCATACATTACCGCTAGTAC 58.689 38.462 0.00 0.00 0.00 2.73
1283 2841 5.524971 TTGCATACATTACCGCTAGTACT 57.475 39.130 0.00 0.00 0.00 2.73
1286 2844 7.041635 TGCATACATTACCGCTAGTACTTAA 57.958 36.000 0.00 0.00 0.00 1.85
1288 2846 7.144000 GCATACATTACCGCTAGTACTTAAGT 58.856 38.462 13.68 13.68 0.00 2.24
1289 2847 7.650903 GCATACATTACCGCTAGTACTTAAGTT 59.349 37.037 14.49 0.00 0.00 2.66
1294 3020 9.657121 CATTACCGCTAGTACTTAAGTTAGTAC 57.343 37.037 14.49 5.77 46.98 2.73
1310 3036 6.759272 AGTTAGTACTCAAAGTCATTGCAGA 58.241 36.000 0.00 0.00 38.98 4.26
1338 3136 8.956426 TCAAAAAGCTAATGGAAGTACCTAATG 58.044 33.333 0.00 0.00 39.86 1.90
1340 3138 6.824958 AAGCTAATGGAAGTACCTAATGGA 57.175 37.500 0.00 0.00 39.86 3.41
1502 4211 0.822121 GCATGATGCATCAGGGCTGA 60.822 55.000 34.76 12.63 44.26 4.26
1589 4344 1.602311 GCTCCATTCGAGGCATGAAT 58.398 50.000 0.00 0.00 39.22 2.57
1747 4502 2.219209 GAACGCAGGCGACGGTAAAC 62.219 60.000 21.62 0.00 42.83 2.01
1750 4505 1.138047 CGCAGGCGACGGTAAACTAG 61.138 60.000 8.15 0.00 42.83 2.57
2016 4780 1.654105 CTACAACGAGACCAACATCGC 59.346 52.381 0.00 0.00 42.61 4.58
2019 4783 2.126071 CGAGACCAACATCGCCGT 60.126 61.111 0.00 0.00 31.42 5.68
2077 4841 3.537206 GACCAGCTCCGGCAACAGT 62.537 63.158 0.00 0.00 41.70 3.55
2608 5414 1.167851 CAACCATGCGGCTATATGGG 58.832 55.000 18.63 6.67 46.43 4.00
2623 5429 5.765677 GCTATATGGGAAAGGGAAAAGTCTC 59.234 44.000 0.00 0.00 0.00 3.36
2656 5462 0.522915 GCTCGTAGTTCCCGTCGAAG 60.523 60.000 0.00 0.00 32.12 3.79
2708 5514 3.383505 CAGTACCCCGTACTCATCAATCA 59.616 47.826 1.47 0.00 44.86 2.57
2712 5518 2.550855 CCCCGTACTCATCAATCATGGG 60.551 54.545 0.00 0.00 39.21 4.00
2773 5579 0.112412 AGGAAAACGCAATCCCCACT 59.888 50.000 0.00 0.00 36.31 4.00
2813 5622 3.644265 TCACTAACTTGGTGGAGCTACAA 59.356 43.478 0.00 0.00 35.61 2.41
2815 5624 4.393062 CACTAACTTGGTGGAGCTACAATG 59.607 45.833 0.00 0.00 0.00 2.82
3093 5951 4.002506 TGGCTGGTGTCGTCGCAT 62.003 61.111 0.00 0.00 0.00 4.73
3145 6003 3.723348 GGAGCACGGGAAACACGC 61.723 66.667 0.00 0.00 34.00 5.34
3173 6031 2.187073 GGACATCACCGTCCGTACT 58.813 57.895 0.00 0.00 45.77 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.815211 CCGTCGGCACATCTGTGG 60.815 66.667 11.98 0.00 45.72 4.17
17 18 4.747529 ACGGGAGTTAACGGCGGC 62.748 66.667 13.24 0.00 43.33 6.53
22 23 2.252127 TACGCCGACGGGAGTTAACG 62.252 60.000 17.22 11.04 44.71 3.18
23 24 0.524180 CTACGCCGACGGGAGTTAAC 60.524 60.000 17.22 0.00 44.71 2.01
24 25 1.656818 CCTACGCCGACGGGAGTTAA 61.657 60.000 17.22 0.00 44.71 2.01
25 26 2.114670 CCTACGCCGACGGGAGTTA 61.115 63.158 17.22 0.00 44.71 2.24
26 27 3.446570 CCTACGCCGACGGGAGTT 61.447 66.667 17.22 0.00 44.71 3.01
28 29 2.905807 GATCCTACGCCGACGGGAG 61.906 68.421 17.22 0.59 46.04 4.30
29 30 2.903855 GATCCTACGCCGACGGGA 60.904 66.667 17.22 3.94 46.04 5.14
30 31 2.777972 TTGATCCTACGCCGACGGG 61.778 63.158 17.22 8.43 46.04 5.28
31 32 1.588139 GTTGATCCTACGCCGACGG 60.588 63.158 10.29 10.29 46.04 4.79
33 34 3.993103 CGTTGATCCTACGCCGAC 58.007 61.111 0.00 0.00 31.73 4.79
38 39 0.457166 TTGACGGCGTTGATCCTACG 60.457 55.000 16.19 11.79 41.71 3.51
39 40 1.717194 TTTGACGGCGTTGATCCTAC 58.283 50.000 16.19 0.00 0.00 3.18
40 41 2.276201 CATTTGACGGCGTTGATCCTA 58.724 47.619 16.19 0.00 0.00 2.94
41 42 1.086696 CATTTGACGGCGTTGATCCT 58.913 50.000 16.19 0.00 0.00 3.24
42 43 0.098728 CCATTTGACGGCGTTGATCC 59.901 55.000 16.19 0.32 0.00 3.36
43 44 0.802494 ACCATTTGACGGCGTTGATC 59.198 50.000 16.19 0.78 0.00 2.92
44 45 0.802494 GACCATTTGACGGCGTTGAT 59.198 50.000 16.19 5.93 0.00 2.57
45 46 0.533085 TGACCATTTGACGGCGTTGA 60.533 50.000 16.19 2.53 0.00 3.18
46 47 0.309302 TTGACCATTTGACGGCGTTG 59.691 50.000 16.19 8.41 0.00 4.10
47 48 0.309612 GTTGACCATTTGACGGCGTT 59.690 50.000 16.19 0.00 0.00 4.84
48 49 1.837538 CGTTGACCATTTGACGGCGT 61.838 55.000 14.65 14.65 32.29 5.68
49 50 1.154488 CGTTGACCATTTGACGGCG 60.154 57.895 4.80 4.80 32.29 6.46
50 51 1.442017 GCGTTGACCATTTGACGGC 60.442 57.895 0.00 0.00 36.14 5.68
51 52 0.110238 CAGCGTTGACCATTTGACGG 60.110 55.000 0.00 0.00 36.14 4.79
52 53 0.865111 TCAGCGTTGACCATTTGACG 59.135 50.000 0.00 0.00 38.45 4.35
53 54 2.316119 GTCAGCGTTGACCATTTGAC 57.684 50.000 20.48 0.00 46.47 3.18
62 63 4.680237 CTGCCCGGTCAGCGTTGA 62.680 66.667 0.00 0.00 0.00 3.18
77 78 2.854032 ATATCCCGGGCCCACCTG 60.854 66.667 24.92 4.73 42.66 4.00
78 79 2.854032 CATATCCCGGGCCCACCT 60.854 66.667 24.92 5.40 36.97 4.00
79 80 4.660938 GCATATCCCGGGCCCACC 62.661 72.222 24.92 0.00 0.00 4.61
80 81 4.660938 GGCATATCCCGGGCCCAC 62.661 72.222 24.92 3.42 41.90 4.61
96 97 2.258591 CATAGGATCGGCCGTCGG 59.741 66.667 27.15 6.99 43.43 4.79
97 98 2.430921 GCATAGGATCGGCCGTCG 60.431 66.667 27.15 10.00 43.43 5.12
98 99 2.048127 GGCATAGGATCGGCCGTC 60.048 66.667 27.15 20.82 43.43 4.79
101 102 2.048127 GTCGGCATAGGATCGGCC 60.048 66.667 0.00 0.00 44.27 6.13
102 103 1.373497 CTGTCGGCATAGGATCGGC 60.373 63.158 0.00 0.00 0.00 5.54
103 104 1.290324 CCTGTCGGCATAGGATCGG 59.710 63.158 0.00 0.00 36.11 4.18
104 105 4.974792 CCTGTCGGCATAGGATCG 57.025 61.111 0.00 0.00 36.11 3.69
129 130 4.509737 GACTGCCCGAGGTACGCC 62.510 72.222 0.00 0.00 41.07 5.68
130 131 4.509737 GGACTGCCCGAGGTACGC 62.510 72.222 0.00 0.00 41.07 4.42
131 132 3.834799 GGGACTGCCCGAGGTACG 61.835 72.222 0.00 0.00 46.48 3.67
152 153 2.027751 GTCGGCATAGACGAGGCC 59.972 66.667 0.61 0.61 46.55 5.19
172 173 1.544825 ATCCATCTATGCCGACGGGG 61.545 60.000 17.22 6.38 39.58 5.73
173 174 0.390340 CATCCATCTATGCCGACGGG 60.390 60.000 17.22 0.00 0.00 5.28
174 175 0.318441 ACATCCATCTATGCCGACGG 59.682 55.000 10.29 10.29 0.00 4.79
175 176 3.182182 CATACATCCATCTATGCCGACG 58.818 50.000 0.00 0.00 0.00 5.12
176 177 2.932614 GCATACATCCATCTATGCCGAC 59.067 50.000 0.00 0.00 39.51 4.79
177 178 3.251479 GCATACATCCATCTATGCCGA 57.749 47.619 0.00 0.00 39.51 5.54
180 181 2.932614 GTCGGCATACATCCATCTATGC 59.067 50.000 1.72 1.72 43.07 3.14
181 182 3.182182 CGTCGGCATACATCCATCTATG 58.818 50.000 0.00 0.00 0.00 2.23
182 183 2.166459 CCGTCGGCATACATCCATCTAT 59.834 50.000 0.00 0.00 0.00 1.98
183 184 1.544246 CCGTCGGCATACATCCATCTA 59.456 52.381 0.00 0.00 0.00 1.98
184 185 0.318441 CCGTCGGCATACATCCATCT 59.682 55.000 0.00 0.00 0.00 2.90
185 186 2.827604 CCGTCGGCATACATCCATC 58.172 57.895 0.00 0.00 0.00 3.51
197 198 2.450345 GGCGTAGAAAAGCCGTCGG 61.450 63.158 6.99 6.99 44.22 4.79
198 199 3.078560 GGCGTAGAAAAGCCGTCG 58.921 61.111 0.00 0.00 44.22 5.12
221 222 2.421739 CCGACGGCCAAGGATAGG 59.578 66.667 2.24 0.00 0.00 2.57
222 223 2.280186 GCCGACGGCCAAGGATAG 60.280 66.667 28.74 0.00 44.06 2.08
232 233 0.243907 CTATGGACCTATGCCGACGG 59.756 60.000 10.29 10.29 0.00 4.79
233 234 1.244816 TCTATGGACCTATGCCGACG 58.755 55.000 0.00 0.00 0.00 5.12
234 235 2.675317 GCATCTATGGACCTATGCCGAC 60.675 54.545 9.28 0.00 39.01 4.79
235 236 1.550524 GCATCTATGGACCTATGCCGA 59.449 52.381 9.28 0.00 39.01 5.54
236 237 2.015736 GCATCTATGGACCTATGCCG 57.984 55.000 9.28 0.00 39.01 5.69
238 239 1.550524 TCGGCATCTATGGACCTATGC 59.449 52.381 11.09 11.09 43.13 3.14
239 240 2.416027 CGTCGGCATCTATGGACCTATG 60.416 54.545 0.00 0.00 0.00 2.23
240 241 1.819288 CGTCGGCATCTATGGACCTAT 59.181 52.381 0.00 0.00 0.00 2.57
241 242 1.244816 CGTCGGCATCTATGGACCTA 58.755 55.000 0.00 0.00 0.00 3.08
242 243 1.464376 CCGTCGGCATCTATGGACCT 61.464 60.000 0.00 0.00 0.00 3.85
243 244 1.006102 CCGTCGGCATCTATGGACC 60.006 63.158 0.00 0.00 0.00 4.46
244 245 1.006102 CCCGTCGGCATCTATGGAC 60.006 63.158 5.50 0.00 0.00 4.02
245 246 2.207229 CCCCGTCGGCATCTATGGA 61.207 63.158 5.50 0.00 0.00 3.41
246 247 2.343758 CCCCGTCGGCATCTATGG 59.656 66.667 5.50 0.00 0.00 2.74
247 248 2.343758 CCCCCGTCGGCATCTATG 59.656 66.667 5.50 0.00 0.00 2.23
265 266 1.730451 AAAAACTGGGGTTGCCGACG 61.730 55.000 0.00 0.00 35.63 5.12
266 267 0.031585 GAAAAACTGGGGTTGCCGAC 59.968 55.000 0.00 0.00 35.63 4.79
267 268 0.106419 AGAAAAACTGGGGTTGCCGA 60.106 50.000 0.00 0.00 35.63 5.54
268 269 0.031994 CAGAAAAACTGGGGTTGCCG 59.968 55.000 0.00 0.00 42.39 5.69
269 270 3.986970 CAGAAAAACTGGGGTTGCC 57.013 52.632 0.00 0.00 42.39 4.52
277 278 5.287226 AGACGTACACTACCAGAAAAACTG 58.713 41.667 0.00 0.00 45.36 3.16
278 279 5.301298 AGAGACGTACACTACCAGAAAAACT 59.699 40.000 0.00 0.00 0.00 2.66
279 280 5.401674 CAGAGACGTACACTACCAGAAAAAC 59.598 44.000 0.00 0.00 0.00 2.43
280 281 5.526115 CAGAGACGTACACTACCAGAAAAA 58.474 41.667 0.00 0.00 0.00 1.94
281 282 4.558095 GCAGAGACGTACACTACCAGAAAA 60.558 45.833 0.00 0.00 0.00 2.29
282 283 3.057736 GCAGAGACGTACACTACCAGAAA 60.058 47.826 0.00 0.00 0.00 2.52
283 284 2.486982 GCAGAGACGTACACTACCAGAA 59.513 50.000 0.00 0.00 0.00 3.02
284 285 2.082231 GCAGAGACGTACACTACCAGA 58.918 52.381 0.00 0.00 0.00 3.86
285 286 1.810755 TGCAGAGACGTACACTACCAG 59.189 52.381 0.00 0.00 0.00 4.00
286 287 1.810755 CTGCAGAGACGTACACTACCA 59.189 52.381 8.42 0.00 0.00 3.25
287 288 2.082231 TCTGCAGAGACGTACACTACC 58.918 52.381 13.74 0.00 0.00 3.18
288 289 3.374367 TGATCTGCAGAGACGTACACTAC 59.626 47.826 22.96 2.55 0.00 2.73
289 290 3.606687 TGATCTGCAGAGACGTACACTA 58.393 45.455 22.96 0.00 0.00 2.74
290 291 2.437413 TGATCTGCAGAGACGTACACT 58.563 47.619 22.96 0.87 0.00 3.55
291 292 2.921634 TGATCTGCAGAGACGTACAC 57.078 50.000 22.96 6.33 0.00 2.90
309 310 9.900710 GAAGATACTATACTGAATGGTGTACTG 57.099 37.037 0.00 0.00 30.86 2.74
346 347 3.489355 AGTGGTTGAGATGTGCAAATGA 58.511 40.909 0.00 0.00 0.00 2.57
363 367 6.683974 AGGTCAATAATCGATTTTGAGTGG 57.316 37.500 23.81 8.64 30.50 4.00
369 373 7.601856 TGCAAGAAAGGTCAATAATCGATTTT 58.398 30.769 17.19 5.51 0.00 1.82
458 462 4.956075 AGCGAAATAATTCTTCCACCCATT 59.044 37.500 0.00 0.00 33.17 3.16
459 463 4.536765 AGCGAAATAATTCTTCCACCCAT 58.463 39.130 0.00 0.00 33.17 4.00
489 493 3.720949 TGCCTGAATCATAGCATTTGC 57.279 42.857 4.27 0.00 42.49 3.68
490 494 5.050363 GCATTTGCCTGAATCATAGCATTTG 60.050 40.000 8.59 9.89 34.72 2.32
491 495 5.054477 GCATTTGCCTGAATCATAGCATTT 58.946 37.500 8.59 0.00 34.72 2.32
564 580 2.241160 TGCCACAAGCTCACAATCATT 58.759 42.857 0.00 0.00 44.23 2.57
642 666 0.251121 ATGGTTGGCATGGTGTTCGA 60.251 50.000 0.00 0.00 0.00 3.71
724 748 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
725 749 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
726 750 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
727 751 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
730 754 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
731 755 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
732 756 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
733 757 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
734 758 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
736 760 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
737 761 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
738 762 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
739 763 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
740 764 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
741 765 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
742 766 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
743 767 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
744 768 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
745 769 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
746 770 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
747 771 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
748 772 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
749 773 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
750 774 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
751 775 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
752 776 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
753 777 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
754 778 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
755 779 1.467678 CCCCTATGAGCACCTCCGAG 61.468 65.000 0.00 0.00 0.00 4.63
756 780 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
757 781 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
758 782 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
759 783 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
760 784 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
761 785 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
762 786 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
763 787 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
764 788 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
765 789 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
766 790 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
767 791 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
768 792 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
769 793 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
770 794 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
771 795 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
772 796 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
773 797 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
774 798 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
775 799 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
778 802 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
779 803 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
780 804 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
781 805 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
782 806 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
783 807 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
784 808 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
785 809 1.024579 CCCCCTATGAACGCACACAC 61.025 60.000 0.00 0.00 0.00 3.82
786 810 1.298340 CCCCCTATGAACGCACACA 59.702 57.895 0.00 0.00 0.00 3.72
787 811 4.218722 CCCCCTATGAACGCACAC 57.781 61.111 0.00 0.00 0.00 3.82
801 825 1.893808 CATGCGCATACACTCCCCC 60.894 63.158 24.84 0.00 0.00 5.40
802 826 0.105964 TACATGCGCATACACTCCCC 59.894 55.000 24.84 0.00 0.00 4.81
803 827 2.169832 ATACATGCGCATACACTCCC 57.830 50.000 24.84 0.00 0.00 4.30
804 828 4.494484 TCATATACATGCGCATACACTCC 58.506 43.478 24.84 0.00 31.73 3.85
805 829 4.032217 GCTCATATACATGCGCATACACTC 59.968 45.833 24.84 2.68 41.55 3.51
806 830 3.928992 GCTCATATACATGCGCATACACT 59.071 43.478 24.84 10.63 41.55 3.55
807 831 3.241773 CGCTCATATACATGCGCATACAC 60.242 47.826 24.84 4.36 41.94 2.90
808 832 2.923020 CGCTCATATACATGCGCATACA 59.077 45.455 24.84 14.18 41.94 2.29
809 833 3.559530 CGCTCATATACATGCGCATAC 57.440 47.619 24.84 3.31 41.94 2.39
815 839 2.545526 ACACAAGCGCTCATATACATGC 59.454 45.455 12.06 0.00 31.73 4.06
816 840 4.053983 AGACACAAGCGCTCATATACATG 58.946 43.478 12.06 4.91 0.00 3.21
817 841 4.053983 CAGACACAAGCGCTCATATACAT 58.946 43.478 12.06 0.00 0.00 2.29
818 842 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
819 843 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
820 844 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
821 845 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
822 846 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
823 847 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
824 848 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
825 849 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
826 850 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
827 851 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
828 852 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
829 853 2.670414 GAGCATCAGTACAGACACAAGC 59.330 50.000 0.00 0.00 33.17 4.01
830 854 3.917988 TGAGCATCAGTACAGACACAAG 58.082 45.455 0.00 0.00 42.56 3.16
856 880 6.428771 CACATTTCAAGCCATTCTCCATTTTT 59.571 34.615 0.00 0.00 0.00 1.94
857 881 5.935789 CACATTTCAAGCCATTCTCCATTTT 59.064 36.000 0.00 0.00 0.00 1.82
968 1026 5.068460 GTCCTCAGTACTCTTCTGTATGCAT 59.932 44.000 3.79 3.79 34.86 3.96
982 1040 2.684881 CCATTGCCATTGTCCTCAGTAC 59.315 50.000 0.00 0.00 0.00 2.73
1059 1123 1.413077 GCATAGAACCTAGGCGGAAGT 59.587 52.381 9.30 0.00 36.31 3.01
1063 1127 0.318784 GTCGCATAGAACCTAGGCGG 60.319 60.000 25.50 12.30 45.99 6.13
1217 2610 6.209391 GGTACAGTAGTAAGTAAAGGGACACA 59.791 42.308 0.00 0.00 30.67 3.72
1282 2840 8.988934 TGCAATGACTTTGAGTACTAACTTAAG 58.011 33.333 0.00 0.00 37.53 1.85
1283 2841 8.896320 TGCAATGACTTTGAGTACTAACTTAA 57.104 30.769 0.00 0.00 37.53 1.85
1286 2844 6.759272 TCTGCAATGACTTTGAGTACTAACT 58.241 36.000 0.00 0.00 37.53 2.24
1288 2846 7.877612 TGATTCTGCAATGACTTTGAGTACTAA 59.122 33.333 0.00 0.00 37.53 2.24
1289 2847 7.386059 TGATTCTGCAATGACTTTGAGTACTA 58.614 34.615 0.00 0.00 37.53 1.82
1294 3020 7.568861 GCTTTTTGATTCTGCAATGACTTTGAG 60.569 37.037 5.31 1.11 37.53 3.02
1310 3036 9.528489 TTAGGTACTTCCATTAGCTTTTTGATT 57.472 29.630 0.00 0.00 41.75 2.57
1338 3136 7.449704 AGTCAGATTAATTAGAATGGCCATTCC 59.550 37.037 41.84 28.35 46.28 3.01
1340 3138 8.773033 AAGTCAGATTAATTAGAATGGCCATT 57.227 30.769 31.09 31.09 0.00 3.16
1502 4211 4.074526 AGCAGCACGGACGCATCT 62.075 61.111 0.00 0.00 0.00 2.90
1589 4344 2.076100 GCCTTGATGTTGTCGATGACA 58.924 47.619 6.33 6.33 41.09 3.58
1624 4379 1.287730 GGAGACAGTCTGCTTGCACG 61.288 60.000 14.63 0.00 31.63 5.34
1735 4490 0.171903 TCAGCTAGTTTACCGTCGCC 59.828 55.000 0.00 0.00 0.00 5.54
1741 4496 4.895961 AGAACCAAGTCAGCTAGTTTACC 58.104 43.478 0.00 0.00 0.00 2.85
1747 4502 7.221067 CGATTAGTAAAGAACCAAGTCAGCTAG 59.779 40.741 0.00 0.00 0.00 3.42
1750 4505 5.446073 GCGATTAGTAAAGAACCAAGTCAGC 60.446 44.000 0.00 0.00 0.00 4.26
2019 4783 2.184322 GAGATGTCGCGAAGGCCA 59.816 61.111 12.06 4.64 35.02 5.36
2608 5414 7.952671 AGGTTTTATTGAGACTTTTCCCTTTC 58.047 34.615 0.00 0.00 0.00 2.62
2623 5429 4.421948 ACTACGAGCTCGAGGTTTTATTG 58.578 43.478 40.58 19.05 43.02 1.90
2656 5462 5.045066 AGGGATTAAAAGGTAAGGGTCTGAC 60.045 44.000 0.00 0.00 0.00 3.51
2708 5514 1.780503 GCAAGGTTAGGATTGCCCAT 58.219 50.000 0.00 0.00 44.76 4.00
2773 5579 3.052262 AGTGAGAGAAGAGGATGATCCCA 60.052 47.826 8.08 0.00 37.19 4.37
2953 5810 0.685458 GATGTTTCCCAGGGCTGCAT 60.685 55.000 0.00 4.35 0.00 3.96
3071 5929 1.227556 GACGACACCAGCCACACTT 60.228 57.895 0.00 0.00 0.00 3.16
3093 5951 1.699730 TAGCATGTCGGGCTAGCTAA 58.300 50.000 15.72 0.00 42.62 3.09
3219 6079 2.325082 GCACAACTCGGCGGAACAT 61.325 57.895 7.21 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.