Multiple sequence alignment - TraesCS2A01G108000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G108000 chr2A 100.000 3240 0 0 1 3240 60070368 60067129 0.000000e+00 5984.0
1 TraesCS2A01G108000 chr2A 84.856 766 71 24 1583 2331 60078832 60078095 0.000000e+00 730.0
2 TraesCS2A01G108000 chr2A 82.991 682 101 15 820 1491 60079610 60078934 1.290000e-168 603.0
3 TraesCS2A01G108000 chr2A 98.621 290 3 1 2950 3238 59990314 59990025 2.230000e-141 512.0
4 TraesCS2A01G108000 chr2A 82.121 330 59 0 1912 2241 59879886 59879557 1.900000e-72 283.0
5 TraesCS2A01G108000 chr2A 87.129 202 24 2 1289 1489 60283505 60283305 9.040000e-56 228.0
6 TraesCS2A01G108000 chr2D 89.177 1737 105 33 733 2443 60065618 60063939 0.000000e+00 2089.0
7 TraesCS2A01G108000 chr2D 81.449 1256 144 50 1260 2478 60079087 60077884 0.000000e+00 946.0
8 TraesCS2A01G108000 chr2D 87.302 756 40 26 31 750 60066368 60065633 0.000000e+00 813.0
9 TraesCS2A01G108000 chr2D 85.984 371 29 8 2487 2837 60062849 60062482 3.050000e-100 375.0
10 TraesCS2A01G108000 chr2D 76.326 811 119 46 471 1227 60079954 60079163 1.840000e-97 366.0
11 TraesCS2A01G108000 chr2D 83.030 330 56 0 1912 2241 60022420 60022091 1.890000e-77 300.0
12 TraesCS2A01G108000 chr2D 87.624 202 23 2 1289 1489 60166995 60166795 1.940000e-57 233.0
13 TraesCS2A01G108000 chr2D 86.139 202 26 2 1289 1489 59724625 59724825 1.960000e-52 217.0
14 TraesCS2A01G108000 chr2D 79.532 171 29 5 1052 1218 60138895 60138727 2.040000e-22 117.0
15 TraesCS2A01G108000 chr2D 78.767 146 14 11 1058 1201 59845625 59845755 7.450000e-12 82.4
16 TraesCS2A01G108000 chr2B 92.453 954 35 10 312 1255 93714668 93713742 0.000000e+00 1328.0
17 TraesCS2A01G108000 chr2B 91.320 841 52 12 1545 2382 93712035 93711213 0.000000e+00 1129.0
18 TraesCS2A01G108000 chr2B 78.592 1364 192 54 472 1758 93883622 93882282 0.000000e+00 809.0
19 TraesCS2A01G108000 chr2B 81.641 975 134 29 818 1758 93805208 93804245 0.000000e+00 767.0
20 TraesCS2A01G108000 chr2B 83.973 599 67 17 1847 2443 93804133 93803562 6.110000e-152 547.0
21 TraesCS2A01G108000 chr2B 83.973 599 67 17 1847 2443 93882170 93881599 6.110000e-152 547.0
22 TraesCS2A01G108000 chr2B 94.553 257 13 1 1272 1527 93712678 93712422 2.340000e-106 396.0
23 TraesCS2A01G108000 chr2B 86.751 317 20 13 20 317 93721250 93720937 1.860000e-87 333.0
24 TraesCS2A01G108000 chr2B 81.515 330 61 0 1912 2241 93700270 93699941 4.120000e-69 272.0
25 TraesCS2A01G108000 chr2B 86.194 268 18 12 66 317 93731516 93731252 4.120000e-69 272.0
26 TraesCS2A01G108000 chr2B 94.737 76 4 0 3140 3215 74214898 74214823 5.680000e-23 119.0
27 TraesCS2A01G108000 chr2B 80.263 152 26 3 1052 1201 93112028 93112177 9.500000e-21 111.0
28 TraesCS2A01G108000 chr2B 78.235 170 31 5 1053 1218 94034299 94034132 1.590000e-18 104.0
29 TraesCS2A01G108000 chr2B 78.235 170 31 5 1053 1218 94224930 94224763 1.590000e-18 104.0
30 TraesCS2A01G108000 chr2B 93.220 59 4 0 2950 3008 773869603 773869545 1.600000e-13 87.9
31 TraesCS2A01G108000 chr7B 94.056 286 9 4 2949 3229 581251119 581250837 8.310000e-116 427.0
32 TraesCS2A01G108000 chr6B 94.495 218 6 4 2950 3166 134771057 134770845 6.700000e-87 331.0
33 TraesCS2A01G108000 chr6B 92.727 220 10 4 2948 3166 583439913 583440127 2.430000e-81 313.0
34 TraesCS2A01G108000 chr5B 92.793 222 7 5 2949 3166 578438391 578438175 2.430000e-81 313.0
35 TraesCS2A01G108000 chr7A 90.265 226 10 4 2948 3166 14827063 14826843 5.290000e-73 285.0
36 TraesCS2A01G108000 chr7A 95.276 127 2 2 2948 3073 675244193 675244070 7.090000e-47 198.0
37 TraesCS2A01G108000 chr7A 86.486 111 14 1 2950 3059 528933570 528933460 1.580000e-23 121.0
38 TraesCS2A01G108000 chr7A 98.276 58 1 0 3074 3131 675244035 675243978 5.720000e-18 102.0
39 TraesCS2A01G108000 chr4D 90.698 215 11 7 3019 3230 30848299 30848507 8.850000e-71 278.0
40 TraesCS2A01G108000 chr4A 96.296 162 2 1 3040 3197 621758616 621758777 2.480000e-66 263.0
41 TraesCS2A01G108000 chr4A 96.429 56 1 1 3184 3238 621760984 621761039 1.240000e-14 91.6
42 TraesCS2A01G108000 chr1B 86.111 72 5 4 2950 3020 279492714 279492781 4.480000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G108000 chr2A 60067129 60070368 3239 True 5984.000000 5984 100.000000 1 3240 1 chr2A.!!$R3 3239
1 TraesCS2A01G108000 chr2A 60078095 60079610 1515 True 666.500000 730 83.923500 820 2331 2 chr2A.!!$R5 1511
2 TraesCS2A01G108000 chr2D 60062482 60066368 3886 True 1092.333333 2089 87.487667 31 2837 3 chr2D.!!$R4 2806
3 TraesCS2A01G108000 chr2D 60077884 60079954 2070 True 656.000000 946 78.887500 471 2478 2 chr2D.!!$R5 2007
4 TraesCS2A01G108000 chr2B 93711213 93714668 3455 True 951.000000 1328 92.775333 312 2382 3 chr2B.!!$R8 2070
5 TraesCS2A01G108000 chr2B 93881599 93883622 2023 True 678.000000 809 81.282500 472 2443 2 chr2B.!!$R10 1971
6 TraesCS2A01G108000 chr2B 93803562 93805208 1646 True 657.000000 767 82.807000 818 2443 2 chr2B.!!$R9 1625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 258 0.392193 AGAATGCAGAGGCCACGAAG 60.392 55.000 5.01 0.0 40.13 3.79 F
346 363 1.682854 CCTCTATGGTAACCGGCGTAA 59.317 52.381 6.01 0.0 0.00 3.18 F
1701 3327 0.949105 CCTCCAAAACCTCACGACCG 60.949 60.000 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1631 3257 0.109597 CATTGGTCTTGCTTGCGGTC 60.110 55.0 0.00 0.0 0.0 4.79 R
1727 3353 0.250467 AGAGCGCAACCATGTCTGTT 60.250 50.0 11.47 0.0 0.0 3.16 R
2918 5675 0.035725 TGATGAGGTTGAGCTGCTGG 60.036 55.0 7.01 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.301070 CAATGCATGGTGGGTGGG 58.699 61.111 0.00 0.00 0.00 4.61
18 19 1.610086 CAATGCATGGTGGGTGGGT 60.610 57.895 0.00 0.00 0.00 4.51
19 20 1.610086 AATGCATGGTGGGTGGGTG 60.610 57.895 0.00 0.00 0.00 4.61
20 21 2.384933 AATGCATGGTGGGTGGGTGT 62.385 55.000 0.00 0.00 0.00 4.16
21 22 2.990967 GCATGGTGGGTGGGTGTG 60.991 66.667 0.00 0.00 0.00 3.82
22 23 2.283101 CATGGTGGGTGGGTGTGG 60.283 66.667 0.00 0.00 0.00 4.17
23 24 3.589542 ATGGTGGGTGGGTGTGGG 61.590 66.667 0.00 0.00 0.00 4.61
24 25 4.845307 TGGTGGGTGGGTGTGGGA 62.845 66.667 0.00 0.00 0.00 4.37
25 26 3.966543 GGTGGGTGGGTGTGGGAG 61.967 72.222 0.00 0.00 0.00 4.30
26 27 3.966543 GTGGGTGGGTGTGGGAGG 61.967 72.222 0.00 0.00 0.00 4.30
56 57 3.628257 GGGGTGATCCAATCAGATTTGGT 60.628 47.826 0.00 0.00 45.32 3.67
109 110 1.876156 GTTCCAACTCCACAGAAGCTG 59.124 52.381 0.00 0.00 37.52 4.24
115 116 1.202818 ACTCCACAGAAGCTGAAACCC 60.203 52.381 0.82 0.00 35.18 4.11
121 122 2.832129 ACAGAAGCTGAAACCCGATCTA 59.168 45.455 0.82 0.00 35.18 1.98
143 144 0.741221 GCACTCTGGATTGGGTCGAC 60.741 60.000 7.13 7.13 0.00 4.20
236 253 2.687781 TCTGAGAATGCAGAGGCCA 58.312 52.632 5.01 0.00 39.84 5.36
241 258 0.392193 AGAATGCAGAGGCCACGAAG 60.392 55.000 5.01 0.00 40.13 3.79
255 272 4.201920 GGCCACGAAGTTTATCCTTCATTC 60.202 45.833 0.00 0.00 41.61 2.67
259 276 6.072175 CCACGAAGTTTATCCTTCATTCCAAA 60.072 38.462 0.00 0.00 41.61 3.28
260 277 7.367285 CACGAAGTTTATCCTTCATTCCAAAA 58.633 34.615 0.00 0.00 41.61 2.44
261 278 7.865385 CACGAAGTTTATCCTTCATTCCAAAAA 59.135 33.333 0.00 0.00 41.61 1.94
262 279 8.082242 ACGAAGTTTATCCTTCATTCCAAAAAG 58.918 33.333 0.00 0.00 37.78 2.27
263 280 8.296713 CGAAGTTTATCCTTCATTCCAAAAAGA 58.703 33.333 0.00 0.00 40.72 2.52
264 281 9.981114 GAAGTTTATCCTTCATTCCAAAAAGAA 57.019 29.630 0.00 0.00 40.46 2.52
340 357 2.488545 CGGATCTCCTCTATGGTAACCG 59.511 54.545 0.00 0.00 37.07 4.44
346 363 1.682854 CCTCTATGGTAACCGGCGTAA 59.317 52.381 6.01 0.00 0.00 3.18
349 366 2.957680 TCTATGGTAACCGGCGTAATCA 59.042 45.455 6.01 0.00 0.00 2.57
410 433 7.228706 CCCATGTGTTTAACCCATATAGAAGAC 59.771 40.741 0.00 0.00 0.00 3.01
411 434 7.993183 CCATGTGTTTAACCCATATAGAAGACT 59.007 37.037 0.00 0.00 0.00 3.24
420 443 8.485578 AACCCATATAGAAGACTAAGAAGAGG 57.514 38.462 0.00 0.00 32.04 3.69
421 444 7.013834 ACCCATATAGAAGACTAAGAAGAGGG 58.986 42.308 0.00 0.00 32.04 4.30
422 445 7.146924 ACCCATATAGAAGACTAAGAAGAGGGA 60.147 40.741 0.00 0.00 32.04 4.20
423 446 7.396055 CCCATATAGAAGACTAAGAAGAGGGAG 59.604 44.444 0.00 0.00 32.04 4.30
424 447 8.167392 CCATATAGAAGACTAAGAAGAGGGAGA 58.833 40.741 0.00 0.00 32.04 3.71
425 448 9.753674 CATATAGAAGACTAAGAAGAGGGAGAT 57.246 37.037 0.00 0.00 32.04 2.75
899 1021 7.346698 ACCTCTTCTGGCTATATATATGTGCAT 59.653 37.037 18.09 0.00 0.00 3.96
1143 1282 2.045926 GTCCAGGCCGCAGTGAAT 60.046 61.111 0.00 0.00 0.00 2.57
1257 1445 2.273370 ATGCACGGACGTTAGTACAG 57.727 50.000 0.00 0.00 0.00 2.74
1268 2496 5.447279 GGACGTTAGTACAGGCAAATGATTG 60.447 44.000 0.00 0.00 39.65 2.67
1318 2555 2.112297 GGGTCCGTTCTGTTGGCA 59.888 61.111 0.00 0.00 0.00 4.92
1378 2615 2.582436 GCCGGTTCCATTCGAGGA 59.418 61.111 1.90 0.00 35.41 3.71
1509 2754 7.764901 GGTAAGCTTTACAGTTAGCTCTAATGT 59.235 37.037 3.20 6.99 46.53 2.71
1536 2781 2.047370 TGCACATGGTCGATGCGT 60.047 55.556 0.00 0.00 42.44 5.24
1564 3179 6.445357 TTCTACTTTCTTGGTTGTGGTTTC 57.555 37.500 0.00 0.00 0.00 2.78
1581 3207 9.442047 TTGTGGTTTCAAATTAAAATTCTGTGT 57.558 25.926 0.00 0.00 0.00 3.72
1664 3290 3.760684 AGACCAATGCAGAAAATGACCTC 59.239 43.478 0.00 0.00 0.00 3.85
1701 3327 0.949105 CCTCCAAAACCTCACGACCG 60.949 60.000 0.00 0.00 0.00 4.79
1727 3353 1.456296 CCAACAAGCAGCTCAGCATA 58.544 50.000 0.00 0.00 36.85 3.14
1771 3397 3.370978 GGTACACACCATCGATGAGTTTG 59.629 47.826 26.86 23.47 45.04 2.93
1772 3398 3.401033 ACACACCATCGATGAGTTTGA 57.599 42.857 26.86 0.00 0.00 2.69
1773 3399 3.738982 ACACACCATCGATGAGTTTGAA 58.261 40.909 26.86 0.00 0.00 2.69
1774 3400 4.326826 ACACACCATCGATGAGTTTGAAT 58.673 39.130 26.86 8.29 0.00 2.57
1775 3401 4.393062 ACACACCATCGATGAGTTTGAATC 59.607 41.667 26.86 0.00 0.00 2.52
1776 3402 4.392754 CACACCATCGATGAGTTTGAATCA 59.607 41.667 26.86 0.00 0.00 2.57
1777 3403 5.065602 CACACCATCGATGAGTTTGAATCAT 59.934 40.000 26.86 0.00 40.08 2.45
1778 3404 5.065602 ACACCATCGATGAGTTTGAATCATG 59.934 40.000 26.86 7.39 37.52 3.07
1779 3405 5.295045 CACCATCGATGAGTTTGAATCATGA 59.705 40.000 26.86 0.00 37.52 3.07
1780 3406 6.017357 CACCATCGATGAGTTTGAATCATGAT 60.017 38.462 26.86 1.18 37.52 2.45
1781 3407 6.544931 ACCATCGATGAGTTTGAATCATGATT 59.455 34.615 26.86 20.85 37.52 2.57
1782 3408 6.856426 CCATCGATGAGTTTGAATCATGATTG 59.144 38.462 25.37 7.15 37.52 2.67
1783 3409 7.255001 CCATCGATGAGTTTGAATCATGATTGA 60.255 37.037 25.37 14.86 37.52 2.57
1785 3411 7.466805 TCGATGAGTTTGAATCATGATTGAAC 58.533 34.615 25.37 24.43 37.52 3.18
1787 3413 7.428472 CGATGAGTTTGAATCATGATTGAACTG 59.572 37.037 31.62 21.24 37.52 3.16
1788 3414 7.748691 TGAGTTTGAATCATGATTGAACTGA 57.251 32.000 31.62 25.98 35.61 3.41
1789 3415 8.168790 TGAGTTTGAATCATGATTGAACTGAA 57.831 30.769 31.62 22.86 35.61 3.02
1790 3416 8.631797 TGAGTTTGAATCATGATTGAACTGAAA 58.368 29.630 31.62 21.35 35.61 2.69
1791 3417 8.807667 AGTTTGAATCATGATTGAACTGAAAC 57.192 30.769 28.70 20.33 34.88 2.78
1792 3418 8.636213 AGTTTGAATCATGATTGAACTGAAACT 58.364 29.630 28.70 21.64 34.88 2.66
1819 3454 0.248539 GTACAACGGCTCGCTAGAGG 60.249 60.000 0.00 0.00 44.51 3.69
1823 3458 3.955101 CGGCTCGCTAGAGGGACG 61.955 72.222 7.37 7.37 44.51 4.79
1824 3459 4.273257 GGCTCGCTAGAGGGACGC 62.273 72.222 0.00 8.51 44.51 5.19
1825 3460 3.213402 GCTCGCTAGAGGGACGCT 61.213 66.667 0.00 0.00 44.51 5.07
1826 3461 1.892862 GCTCGCTAGAGGGACGCTA 60.893 63.158 0.00 0.00 44.51 4.26
1835 3470 2.457598 AGAGGGACGCTAATTCTGACA 58.542 47.619 0.00 0.00 36.12 3.58
1836 3471 2.166664 AGAGGGACGCTAATTCTGACAC 59.833 50.000 0.00 0.00 36.12 3.67
1837 3472 1.135083 AGGGACGCTAATTCTGACACG 60.135 52.381 0.00 0.00 0.00 4.49
1838 3473 1.403780 GGGACGCTAATTCTGACACGT 60.404 52.381 0.00 0.00 36.30 4.49
2044 3722 4.260784 GCCTATTACAGCAACCTGATTTCG 60.261 45.833 0.00 0.00 41.77 3.46
2073 3751 1.668101 CTCCTACACTCGGACCAGGC 61.668 65.000 0.00 0.00 0.00 4.85
2155 3833 2.515057 AACAACGCCTTCGCCACA 60.515 55.556 0.00 0.00 39.84 4.17
2179 3857 3.368248 CATGGTGAAGATGGGGAACATT 58.632 45.455 0.00 0.00 40.72 2.71
2191 3869 0.598065 GGAACATTGCGCCAAAGACT 59.402 50.000 4.18 0.00 0.00 3.24
2275 3953 1.521010 CTCTGCTGCTGCTACGCAT 60.521 57.895 17.00 0.00 39.52 4.73
2347 4032 3.236754 CGAGTACGTAGCGTGTGTATTTG 59.763 47.826 0.00 0.00 41.39 2.32
2352 4041 1.363145 TAGCGTGTGTATTTGGGCGC 61.363 55.000 0.00 0.00 44.36 6.53
2443 4134 6.035650 CACGACGAATTGCTTCCTTTTATCTA 59.964 38.462 0.00 0.00 0.00 1.98
2448 4139 7.552687 ACGAATTGCTTCCTTTTATCTATGACA 59.447 33.333 0.00 0.00 0.00 3.58
2449 4140 8.562892 CGAATTGCTTCCTTTTATCTATGACAT 58.437 33.333 0.00 0.00 0.00 3.06
2475 4177 8.687242 TCTGTACTTTGAGATGTTACTATCTGG 58.313 37.037 0.00 0.00 37.53 3.86
2478 4180 6.893583 ACTTTGAGATGTTACTATCTGGCAT 58.106 36.000 0.00 0.00 37.53 4.40
2481 4183 6.094193 TGAGATGTTACTATCTGGCATCTG 57.906 41.667 9.66 0.00 44.10 2.90
2482 4184 4.892433 AGATGTTACTATCTGGCATCTGC 58.108 43.478 4.78 0.00 42.95 4.26
2494 4196 1.818642 GCATCTGCCACTTGAAGTCT 58.181 50.000 0.00 0.00 34.31 3.24
2504 5244 4.747009 GCCACTTGAAGTCTTTAACCCTCT 60.747 45.833 0.00 0.00 0.00 3.69
2528 5268 4.700365 GCGGCGGTCTTTGTTGGC 62.700 66.667 9.78 0.00 0.00 4.52
2541 5281 2.151881 TGTTGGCATGCAAATGTCAC 57.848 45.000 21.36 3.19 35.69 3.67
2551 5291 2.290260 TGCAAATGTCACTGGAGGGTAG 60.290 50.000 0.00 0.00 0.00 3.18
2554 5294 1.958288 ATGTCACTGGAGGGTAGCTT 58.042 50.000 0.00 0.00 0.00 3.74
2559 5299 1.347707 CACTGGAGGGTAGCTTTCACA 59.652 52.381 0.00 0.00 0.00 3.58
2591 5331 4.075682 GGGATGATCGTCTCTACTGATGA 58.924 47.826 14.50 0.00 36.55 2.92
2651 5405 9.182933 GACGAGACACTATAAATCCATCTTTAC 57.817 37.037 0.00 0.00 0.00 2.01
2711 5465 5.067283 GCTTTAAACAAAGTTCCACTCCTGA 59.933 40.000 0.00 0.00 32.52 3.86
2719 5473 3.705051 AGTTCCACTCCTGATTACGGTA 58.295 45.455 0.00 0.00 0.00 4.02
2738 5492 0.394352 ACATTCCAGGCCGTTCCATC 60.394 55.000 0.00 0.00 37.29 3.51
2747 5501 2.168936 AGGCCGTTCCATCGTAACATTA 59.831 45.455 0.00 0.00 37.29 1.90
2759 5513 8.233868 TCCATCGTAACATTACAAACTTCATTG 58.766 33.333 2.88 0.00 36.37 2.82
2812 5569 7.730784 TCATAACTTTCATTAACCTTTCCCCAA 59.269 33.333 0.00 0.00 0.00 4.12
2813 5570 6.419484 AACTTTCATTAACCTTTCCCCAAG 57.581 37.500 0.00 0.00 0.00 3.61
2824 5581 1.822425 TTCCCCAAGGGTGTACTTCA 58.178 50.000 4.11 0.00 44.74 3.02
2828 5585 1.271926 CCCAAGGGTGTACTTCAAGGG 60.272 57.143 0.00 0.00 0.00 3.95
2877 5634 1.745232 AAAAAGGTGTGCGACAGTCA 58.255 45.000 0.41 0.00 0.00 3.41
2878 5635 1.014352 AAAAGGTGTGCGACAGTCAC 58.986 50.000 0.41 0.00 35.14 3.67
2879 5636 0.107897 AAAGGTGTGCGACAGTCACA 60.108 50.000 0.41 0.00 41.62 3.58
2880 5637 0.107897 AAGGTGTGCGACAGTCACAA 60.108 50.000 0.41 0.00 44.86 3.33
2881 5638 0.530650 AGGTGTGCGACAGTCACAAG 60.531 55.000 0.41 0.00 44.86 3.16
2882 5639 0.529773 GGTGTGCGACAGTCACAAGA 60.530 55.000 0.41 0.00 44.86 3.02
2883 5640 1.286501 GTGTGCGACAGTCACAAGAA 58.713 50.000 0.41 0.00 44.86 2.52
2884 5641 1.663643 GTGTGCGACAGTCACAAGAAA 59.336 47.619 0.41 0.00 44.86 2.52
2885 5642 2.287915 GTGTGCGACAGTCACAAGAAAT 59.712 45.455 0.41 0.00 44.86 2.17
2886 5643 2.287644 TGTGCGACAGTCACAAGAAATG 59.712 45.455 0.41 0.00 41.01 2.32
2887 5644 1.264020 TGCGACAGTCACAAGAAATGC 59.736 47.619 0.41 0.00 0.00 3.56
2888 5645 1.532868 GCGACAGTCACAAGAAATGCT 59.467 47.619 0.41 0.00 0.00 3.79
2889 5646 2.031682 GCGACAGTCACAAGAAATGCTT 60.032 45.455 0.41 0.00 37.29 3.91
2901 5658 4.090761 AGAAATGCTTGAACACCTCTCA 57.909 40.909 0.00 0.00 0.00 3.27
2902 5659 4.660168 AGAAATGCTTGAACACCTCTCAT 58.340 39.130 0.00 0.00 0.00 2.90
2903 5660 5.809001 AGAAATGCTTGAACACCTCTCATA 58.191 37.500 0.00 0.00 0.00 2.15
2904 5661 5.645497 AGAAATGCTTGAACACCTCTCATAC 59.355 40.000 0.00 0.00 0.00 2.39
2905 5662 3.334583 TGCTTGAACACCTCTCATACC 57.665 47.619 0.00 0.00 0.00 2.73
2906 5663 2.906389 TGCTTGAACACCTCTCATACCT 59.094 45.455 0.00 0.00 0.00 3.08
2907 5664 4.093743 TGCTTGAACACCTCTCATACCTA 58.906 43.478 0.00 0.00 0.00 3.08
2908 5665 4.081642 TGCTTGAACACCTCTCATACCTAC 60.082 45.833 0.00 0.00 0.00 3.18
2909 5666 4.680975 GCTTGAACACCTCTCATACCTACC 60.681 50.000 0.00 0.00 0.00 3.18
2910 5667 3.371965 TGAACACCTCTCATACCTACCC 58.628 50.000 0.00 0.00 0.00 3.69
2911 5668 3.012502 TGAACACCTCTCATACCTACCCT 59.987 47.826 0.00 0.00 0.00 4.34
2912 5669 3.033659 ACACCTCTCATACCTACCCTG 57.966 52.381 0.00 0.00 0.00 4.45
2913 5670 2.320781 CACCTCTCATACCTACCCTGG 58.679 57.143 0.00 0.00 0.00 4.45
2914 5671 2.091278 CACCTCTCATACCTACCCTGGA 60.091 54.545 0.00 0.00 0.00 3.86
2915 5672 2.590611 ACCTCTCATACCTACCCTGGAA 59.409 50.000 0.00 0.00 0.00 3.53
2916 5673 3.013648 ACCTCTCATACCTACCCTGGAAA 59.986 47.826 0.00 0.00 0.00 3.13
2917 5674 3.388350 CCTCTCATACCTACCCTGGAAAC 59.612 52.174 0.00 0.00 0.00 2.78
2918 5675 3.381335 TCTCATACCTACCCTGGAAACC 58.619 50.000 0.00 0.00 0.00 3.27
2919 5676 2.438392 CTCATACCTACCCTGGAAACCC 59.562 54.545 0.00 0.00 0.00 4.11
2920 5677 2.201830 CATACCTACCCTGGAAACCCA 58.798 52.381 0.00 0.00 0.00 4.51
2927 5684 3.993535 CTGGAAACCCAGCAGCTC 58.006 61.111 0.00 0.00 44.11 4.09
2928 5685 1.073722 CTGGAAACCCAGCAGCTCA 59.926 57.895 0.00 0.00 44.11 4.26
2929 5686 0.538057 CTGGAAACCCAGCAGCTCAA 60.538 55.000 0.00 0.00 44.11 3.02
2930 5687 0.823356 TGGAAACCCAGCAGCTCAAC 60.823 55.000 0.00 0.00 0.00 3.18
2931 5688 1.527433 GGAAACCCAGCAGCTCAACC 61.527 60.000 0.00 0.00 0.00 3.77
2932 5689 0.538287 GAAACCCAGCAGCTCAACCT 60.538 55.000 0.00 0.00 0.00 3.50
2933 5690 0.538287 AAACCCAGCAGCTCAACCTC 60.538 55.000 0.00 0.00 0.00 3.85
2934 5691 1.708993 AACCCAGCAGCTCAACCTCA 61.709 55.000 0.00 0.00 0.00 3.86
2935 5692 1.302285 CCCAGCAGCTCAACCTCAT 59.698 57.895 0.00 0.00 0.00 2.90
2936 5693 0.747283 CCCAGCAGCTCAACCTCATC 60.747 60.000 0.00 0.00 0.00 2.92
2937 5694 0.035725 CCAGCAGCTCAACCTCATCA 60.036 55.000 0.00 0.00 0.00 3.07
2938 5695 1.408405 CCAGCAGCTCAACCTCATCAT 60.408 52.381 0.00 0.00 0.00 2.45
2939 5696 1.671328 CAGCAGCTCAACCTCATCATG 59.329 52.381 0.00 0.00 0.00 3.07
2940 5697 1.281287 AGCAGCTCAACCTCATCATGT 59.719 47.619 0.00 0.00 0.00 3.21
2941 5698 2.502947 AGCAGCTCAACCTCATCATGTA 59.497 45.455 0.00 0.00 0.00 2.29
2942 5699 2.871022 GCAGCTCAACCTCATCATGTAG 59.129 50.000 0.00 0.00 0.00 2.74
2943 5700 3.681034 GCAGCTCAACCTCATCATGTAGT 60.681 47.826 0.00 0.00 0.00 2.73
2944 5701 4.442052 GCAGCTCAACCTCATCATGTAGTA 60.442 45.833 0.00 0.00 0.00 1.82
2945 5702 5.664457 CAGCTCAACCTCATCATGTAGTAA 58.336 41.667 0.00 0.00 0.00 2.24
2946 5703 6.108687 CAGCTCAACCTCATCATGTAGTAAA 58.891 40.000 0.00 0.00 0.00 2.01
2947 5704 6.765036 CAGCTCAACCTCATCATGTAGTAAAT 59.235 38.462 0.00 0.00 0.00 1.40
2948 5705 6.989169 AGCTCAACCTCATCATGTAGTAAATC 59.011 38.462 0.00 0.00 0.00 2.17
2949 5706 6.203723 GCTCAACCTCATCATGTAGTAAATCC 59.796 42.308 0.00 0.00 0.00 3.01
2950 5707 7.194112 TCAACCTCATCATGTAGTAAATCCA 57.806 36.000 0.00 0.00 0.00 3.41
2951 5708 7.629157 TCAACCTCATCATGTAGTAAATCCAA 58.371 34.615 0.00 0.00 0.00 3.53
2952 5709 7.552687 TCAACCTCATCATGTAGTAAATCCAAC 59.447 37.037 0.00 0.00 0.00 3.77
2953 5710 6.049149 ACCTCATCATGTAGTAAATCCAACG 58.951 40.000 0.00 0.00 0.00 4.10
2954 5711 5.466728 CCTCATCATGTAGTAAATCCAACGG 59.533 44.000 0.00 0.00 0.00 4.44
2955 5712 4.814234 TCATCATGTAGTAAATCCAACGGC 59.186 41.667 0.00 0.00 0.00 5.68
2956 5713 3.191669 TCATGTAGTAAATCCAACGGCG 58.808 45.455 4.80 4.80 0.00 6.46
2957 5714 2.012937 TGTAGTAAATCCAACGGCGG 57.987 50.000 13.24 0.00 0.00 6.13
2958 5715 1.549620 TGTAGTAAATCCAACGGCGGA 59.450 47.619 13.24 0.00 40.07 5.54
2959 5716 2.199236 GTAGTAAATCCAACGGCGGAG 58.801 52.381 13.24 2.29 38.83 4.63
2976 5733 3.906998 CGGAGCTATGTTATGACCTGAG 58.093 50.000 0.00 0.00 0.00 3.35
2977 5734 3.305676 CGGAGCTATGTTATGACCTGAGG 60.306 52.174 0.00 0.00 0.00 3.86
2978 5735 3.007398 GGAGCTATGTTATGACCTGAGGG 59.993 52.174 2.38 0.00 38.88 4.30
2979 5736 2.975489 AGCTATGTTATGACCTGAGGGG 59.025 50.000 2.38 0.00 41.89 4.79
2980 5737 2.039084 GCTATGTTATGACCTGAGGGGG 59.961 54.545 2.38 0.00 40.03 5.40
2981 5738 0.846693 ATGTTATGACCTGAGGGGGC 59.153 55.000 2.38 0.00 45.52 5.80
2982 5739 1.279025 TGTTATGACCTGAGGGGGCC 61.279 60.000 2.38 0.00 44.39 5.80
2983 5740 2.070039 TTATGACCTGAGGGGGCCG 61.070 63.158 2.38 0.00 44.39 6.13
2984 5741 2.833151 TTATGACCTGAGGGGGCCGT 62.833 60.000 2.38 0.00 44.39 5.68
3005 5762 2.037208 CCCCCAGCCCAAACGATT 59.963 61.111 0.00 0.00 0.00 3.34
3006 5763 1.609210 CCCCCAGCCCAAACGATTT 60.609 57.895 0.00 0.00 0.00 2.17
3007 5764 1.191489 CCCCCAGCCCAAACGATTTT 61.191 55.000 0.00 0.00 0.00 1.82
3008 5765 1.551452 CCCCAGCCCAAACGATTTTA 58.449 50.000 0.00 0.00 0.00 1.52
3009 5766 2.107366 CCCCAGCCCAAACGATTTTAT 58.893 47.619 0.00 0.00 0.00 1.40
3010 5767 2.499693 CCCCAGCCCAAACGATTTTATT 59.500 45.455 0.00 0.00 0.00 1.40
3011 5768 3.055458 CCCCAGCCCAAACGATTTTATTT 60.055 43.478 0.00 0.00 0.00 1.40
3012 5769 4.180817 CCCAGCCCAAACGATTTTATTTC 58.819 43.478 0.00 0.00 0.00 2.17
3013 5770 4.322349 CCCAGCCCAAACGATTTTATTTCA 60.322 41.667 0.00 0.00 0.00 2.69
3014 5771 5.418676 CCAGCCCAAACGATTTTATTTCAT 58.581 37.500 0.00 0.00 0.00 2.57
3015 5772 5.874261 CCAGCCCAAACGATTTTATTTCATT 59.126 36.000 0.00 0.00 0.00 2.57
3016 5773 7.038659 CCAGCCCAAACGATTTTATTTCATTA 58.961 34.615 0.00 0.00 0.00 1.90
3017 5774 7.010091 CCAGCCCAAACGATTTTATTTCATTAC 59.990 37.037 0.00 0.00 0.00 1.89
3018 5775 7.759433 CAGCCCAAACGATTTTATTTCATTACT 59.241 33.333 0.00 0.00 0.00 2.24
3019 5776 8.962679 AGCCCAAACGATTTTATTTCATTACTA 58.037 29.630 0.00 0.00 0.00 1.82
3020 5777 9.016623 GCCCAAACGATTTTATTTCATTACTAC 57.983 33.333 0.00 0.00 0.00 2.73
3033 5790 6.710597 TTCATTACTACTAGGTAGCAGTGG 57.289 41.667 4.82 0.87 39.51 4.00
3034 5791 4.583489 TCATTACTACTAGGTAGCAGTGGC 59.417 45.833 4.82 0.00 39.51 5.01
3035 5792 1.777941 ACTACTAGGTAGCAGTGGCC 58.222 55.000 0.00 0.00 39.51 5.36
3036 5793 1.041437 CTACTAGGTAGCAGTGGCCC 58.959 60.000 0.00 0.00 42.56 5.80
3037 5794 0.398098 TACTAGGTAGCAGTGGCCCC 60.398 60.000 0.00 0.00 42.56 5.80
3038 5795 1.383248 CTAGGTAGCAGTGGCCCCT 60.383 63.158 0.00 0.00 42.63 4.79
3039 5796 1.689233 TAGGTAGCAGTGGCCCCTG 60.689 63.158 11.40 11.40 40.84 4.45
3058 5815 3.670637 CTGGCTGCAGCTCGGCTTA 62.671 63.158 35.82 13.83 46.32 3.09
3059 5816 2.436646 GGCTGCAGCTCGGCTTAA 60.437 61.111 35.82 0.00 46.32 1.85
3060 5817 1.821332 GGCTGCAGCTCGGCTTAAT 60.821 57.895 35.82 0.00 46.32 1.40
3061 5818 1.645997 GCTGCAGCTCGGCTTAATC 59.354 57.895 31.33 0.00 43.74 1.75
3062 5819 1.780025 GCTGCAGCTCGGCTTAATCC 61.780 60.000 31.33 0.00 43.74 3.01
3063 5820 0.462581 CTGCAGCTCGGCTTAATCCA 60.463 55.000 0.00 0.00 36.40 3.41
3064 5821 0.181114 TGCAGCTCGGCTTAATCCAT 59.819 50.000 0.00 0.00 36.40 3.41
3065 5822 0.871057 GCAGCTCGGCTTAATCCATC 59.129 55.000 0.00 0.00 36.40 3.51
3066 5823 1.542108 GCAGCTCGGCTTAATCCATCT 60.542 52.381 0.00 0.00 36.40 2.90
3067 5824 2.843701 CAGCTCGGCTTAATCCATCTT 58.156 47.619 0.00 0.00 36.40 2.40
3068 5825 2.805099 CAGCTCGGCTTAATCCATCTTC 59.195 50.000 0.00 0.00 36.40 2.87
3069 5826 2.435805 AGCTCGGCTTAATCCATCTTCA 59.564 45.455 0.00 0.00 33.89 3.02
3070 5827 2.545946 GCTCGGCTTAATCCATCTTCAC 59.454 50.000 0.00 0.00 0.00 3.18
3071 5828 2.797156 CTCGGCTTAATCCATCTTCACG 59.203 50.000 0.00 0.00 0.00 4.35
3072 5829 1.261619 CGGCTTAATCCATCTTCACGC 59.738 52.381 0.00 0.00 0.00 5.34
3073 5830 2.288666 GGCTTAATCCATCTTCACGCA 58.711 47.619 0.00 0.00 0.00 5.24
3074 5831 2.032178 GGCTTAATCCATCTTCACGCAC 59.968 50.000 0.00 0.00 0.00 5.34
3075 5832 2.677836 GCTTAATCCATCTTCACGCACA 59.322 45.455 0.00 0.00 0.00 4.57
3076 5833 3.242543 GCTTAATCCATCTTCACGCACAG 60.243 47.826 0.00 0.00 0.00 3.66
3077 5834 2.479566 AATCCATCTTCACGCACAGT 57.520 45.000 0.00 0.00 0.00 3.55
3085 5842 2.352686 CACGCACAGTGCAGCAAC 60.353 61.111 25.19 0.00 45.36 4.17
3086 5843 3.940640 ACGCACAGTGCAGCAACG 61.941 61.111 25.19 10.10 45.36 4.10
3087 5844 3.639008 CGCACAGTGCAGCAACGA 61.639 61.111 25.19 0.00 45.36 3.85
3088 5845 2.715005 GCACAGTGCAGCAACGAA 59.285 55.556 21.22 0.00 44.26 3.85
3089 5846 1.655350 GCACAGTGCAGCAACGAAC 60.655 57.895 21.22 0.00 44.26 3.95
3090 5847 2.016961 CACAGTGCAGCAACGAACT 58.983 52.632 0.00 0.00 0.00 3.01
3091 5848 1.217001 CACAGTGCAGCAACGAACTA 58.783 50.000 0.00 0.00 0.00 2.24
3092 5849 1.597195 CACAGTGCAGCAACGAACTAA 59.403 47.619 0.00 0.00 0.00 2.24
3093 5850 1.597663 ACAGTGCAGCAACGAACTAAC 59.402 47.619 0.00 0.00 0.00 2.34
3094 5851 1.069906 CAGTGCAGCAACGAACTAACC 60.070 52.381 0.00 0.00 0.00 2.85
3095 5852 0.237498 GTGCAGCAACGAACTAACCC 59.763 55.000 0.00 0.00 0.00 4.11
3096 5853 0.179043 TGCAGCAACGAACTAACCCA 60.179 50.000 0.00 0.00 0.00 4.51
3097 5854 1.165270 GCAGCAACGAACTAACCCAT 58.835 50.000 0.00 0.00 0.00 4.00
3098 5855 1.130561 GCAGCAACGAACTAACCCATC 59.869 52.381 0.00 0.00 0.00 3.51
3099 5856 2.699954 CAGCAACGAACTAACCCATCT 58.300 47.619 0.00 0.00 0.00 2.90
3100 5857 3.074412 CAGCAACGAACTAACCCATCTT 58.926 45.455 0.00 0.00 0.00 2.40
3101 5858 3.125316 CAGCAACGAACTAACCCATCTTC 59.875 47.826 0.00 0.00 0.00 2.87
3102 5859 3.071479 GCAACGAACTAACCCATCTTCA 58.929 45.455 0.00 0.00 0.00 3.02
3103 5860 3.125316 GCAACGAACTAACCCATCTTCAG 59.875 47.826 0.00 0.00 0.00 3.02
3104 5861 3.611766 ACGAACTAACCCATCTTCAGG 57.388 47.619 0.00 0.00 0.00 3.86
3105 5862 2.280628 CGAACTAACCCATCTTCAGGC 58.719 52.381 0.00 0.00 0.00 4.85
3106 5863 2.354704 CGAACTAACCCATCTTCAGGCA 60.355 50.000 0.00 0.00 0.00 4.75
3107 5864 2.789409 ACTAACCCATCTTCAGGCAC 57.211 50.000 0.00 0.00 0.00 5.01
3108 5865 1.985159 ACTAACCCATCTTCAGGCACA 59.015 47.619 0.00 0.00 0.00 4.57
3109 5866 2.578021 ACTAACCCATCTTCAGGCACAT 59.422 45.455 0.00 0.00 0.00 3.21
3110 5867 1.843368 AACCCATCTTCAGGCACATG 58.157 50.000 0.00 0.00 0.00 3.21
3111 5868 0.682209 ACCCATCTTCAGGCACATGC 60.682 55.000 0.00 0.00 41.14 4.06
3112 5869 0.395311 CCCATCTTCAGGCACATGCT 60.395 55.000 3.48 0.00 41.70 3.79
3113 5870 1.471119 CCATCTTCAGGCACATGCTT 58.529 50.000 3.48 0.00 41.70 3.91
3114 5871 1.404391 CCATCTTCAGGCACATGCTTC 59.596 52.381 3.48 0.00 41.70 3.86
3115 5872 2.366533 CATCTTCAGGCACATGCTTCT 58.633 47.619 3.48 0.00 41.70 2.85
3116 5873 2.105006 TCTTCAGGCACATGCTTCTC 57.895 50.000 3.48 0.00 41.70 2.87
3117 5874 1.348696 TCTTCAGGCACATGCTTCTCA 59.651 47.619 3.48 0.00 41.70 3.27
3118 5875 1.738350 CTTCAGGCACATGCTTCTCAG 59.262 52.381 3.48 0.00 41.70 3.35
3126 5883 2.096013 CACATGCTTCTCAGCTCATGTG 59.904 50.000 22.14 22.14 46.14 3.21
3127 5884 4.420639 CACATGCTTCTCAGCTCATGTGT 61.421 47.826 24.98 4.24 46.17 3.72
3128 5885 6.430723 CACATGCTTCTCAGCTCATGTGTG 62.431 50.000 24.98 11.07 46.17 3.82
3129 5886 1.805869 GCTTCTCAGCTCATGTGTGT 58.194 50.000 0.00 0.00 43.51 3.72
3130 5887 2.964740 GCTTCTCAGCTCATGTGTGTA 58.035 47.619 0.00 0.00 43.51 2.90
3131 5888 3.329386 GCTTCTCAGCTCATGTGTGTAA 58.671 45.455 0.00 0.00 43.51 2.41
3132 5889 3.748048 GCTTCTCAGCTCATGTGTGTAAA 59.252 43.478 0.00 0.00 43.51 2.01
3133 5890 4.394300 GCTTCTCAGCTCATGTGTGTAAAT 59.606 41.667 0.00 0.00 43.51 1.40
3134 5891 5.106396 GCTTCTCAGCTCATGTGTGTAAATT 60.106 40.000 0.00 0.00 43.51 1.82
3135 5892 6.092670 GCTTCTCAGCTCATGTGTGTAAATTA 59.907 38.462 0.00 0.00 43.51 1.40
3136 5893 7.201679 GCTTCTCAGCTCATGTGTGTAAATTAT 60.202 37.037 0.00 0.00 43.51 1.28
3137 5894 9.317936 CTTCTCAGCTCATGTGTGTAAATTATA 57.682 33.333 0.00 0.00 0.00 0.98
3138 5895 9.836864 TTCTCAGCTCATGTGTGTAAATTATAT 57.163 29.630 0.00 0.00 0.00 0.86
3139 5896 9.481340 TCTCAGCTCATGTGTGTAAATTATATC 57.519 33.333 0.00 0.00 0.00 1.63
3140 5897 9.486497 CTCAGCTCATGTGTGTAAATTATATCT 57.514 33.333 0.00 0.00 0.00 1.98
3148 5905 9.830975 ATGTGTGTAAATTATATCTAGTGTGCA 57.169 29.630 0.00 0.00 0.00 4.57
3149 5906 9.830975 TGTGTGTAAATTATATCTAGTGTGCAT 57.169 29.630 0.00 0.00 0.00 3.96
3151 5908 8.773645 TGTGTAAATTATATCTAGTGTGCATGC 58.226 33.333 11.82 11.82 0.00 4.06
3152 5909 8.773645 GTGTAAATTATATCTAGTGTGCATGCA 58.226 33.333 18.46 18.46 0.00 3.96
3153 5910 8.992073 TGTAAATTATATCTAGTGTGCATGCAG 58.008 33.333 23.41 9.30 0.00 4.41
3154 5911 8.993121 GTAAATTATATCTAGTGTGCATGCAGT 58.007 33.333 23.41 11.56 0.00 4.40
3155 5912 7.664082 AATTATATCTAGTGTGCATGCAGTC 57.336 36.000 23.41 16.80 0.00 3.51
3156 5913 4.677673 ATATCTAGTGTGCATGCAGTCA 57.322 40.909 23.41 14.24 0.00 3.41
3157 5914 2.084610 TCTAGTGTGCATGCAGTCAC 57.915 50.000 25.98 25.98 0.00 3.67
3158 5915 1.620323 TCTAGTGTGCATGCAGTCACT 59.380 47.619 33.40 33.40 42.56 3.41
3159 5916 2.825532 TCTAGTGTGCATGCAGTCACTA 59.174 45.455 32.47 32.47 40.77 2.74
3160 5917 2.090400 AGTGTGCATGCAGTCACTAG 57.910 50.000 31.53 0.00 39.01 2.57
3161 5918 1.620323 AGTGTGCATGCAGTCACTAGA 59.380 47.619 31.53 3.64 39.01 2.43
3162 5919 2.037641 AGTGTGCATGCAGTCACTAGAA 59.962 45.455 31.53 2.76 39.01 2.10
3163 5920 3.005554 GTGTGCATGCAGTCACTAGAAT 58.994 45.455 26.00 0.00 34.49 2.40
3164 5921 4.081476 AGTGTGCATGCAGTCACTAGAATA 60.081 41.667 31.53 2.05 39.01 1.75
3165 5922 4.269603 GTGTGCATGCAGTCACTAGAATAG 59.730 45.833 26.00 0.00 46.50 1.73
3166 5923 3.247173 GTGCATGCAGTCACTAGAATAGC 59.753 47.826 23.41 0.00 44.39 2.97
3167 5924 2.805099 GCATGCAGTCACTAGAATAGCC 59.195 50.000 14.21 0.00 44.39 3.93
3168 5925 3.494048 GCATGCAGTCACTAGAATAGCCT 60.494 47.826 14.21 0.00 44.39 4.58
3169 5926 3.808466 TGCAGTCACTAGAATAGCCTG 57.192 47.619 0.00 0.00 44.39 4.85
3170 5927 2.478831 GCAGTCACTAGAATAGCCTGC 58.521 52.381 0.00 1.54 44.39 4.85
3171 5928 2.736978 CAGTCACTAGAATAGCCTGCG 58.263 52.381 0.00 0.00 44.39 5.18
3172 5929 2.359214 CAGTCACTAGAATAGCCTGCGA 59.641 50.000 0.00 0.00 44.39 5.10
3173 5930 3.024547 AGTCACTAGAATAGCCTGCGAA 58.975 45.455 0.00 0.00 44.39 4.70
3174 5931 3.117046 GTCACTAGAATAGCCTGCGAAC 58.883 50.000 0.00 0.00 44.39 3.95
3175 5932 3.024547 TCACTAGAATAGCCTGCGAACT 58.975 45.455 0.00 0.00 44.39 3.01
3176 5933 3.066900 TCACTAGAATAGCCTGCGAACTC 59.933 47.826 0.00 0.00 44.39 3.01
3177 5934 3.024547 ACTAGAATAGCCTGCGAACTCA 58.975 45.455 0.00 0.00 44.39 3.41
3178 5935 3.639094 ACTAGAATAGCCTGCGAACTCAT 59.361 43.478 0.00 0.00 44.39 2.90
3179 5936 3.550437 AGAATAGCCTGCGAACTCATT 57.450 42.857 0.00 0.00 0.00 2.57
3180 5937 3.201290 AGAATAGCCTGCGAACTCATTG 58.799 45.455 0.00 0.00 0.00 2.82
3181 5938 2.698855 ATAGCCTGCGAACTCATTGT 57.301 45.000 0.00 0.00 0.00 2.71
3182 5939 3.819564 ATAGCCTGCGAACTCATTGTA 57.180 42.857 0.00 0.00 0.00 2.41
3183 5940 2.698855 AGCCTGCGAACTCATTGTAT 57.301 45.000 0.00 0.00 0.00 2.29
3184 5941 2.991250 AGCCTGCGAACTCATTGTATT 58.009 42.857 0.00 0.00 0.00 1.89
3185 5942 2.939103 AGCCTGCGAACTCATTGTATTC 59.061 45.455 0.00 0.00 0.00 1.75
3186 5943 2.677836 GCCTGCGAACTCATTGTATTCA 59.322 45.455 0.00 0.00 0.00 2.57
3187 5944 3.313526 GCCTGCGAACTCATTGTATTCAT 59.686 43.478 0.00 0.00 0.00 2.57
3188 5945 4.553547 GCCTGCGAACTCATTGTATTCATC 60.554 45.833 0.00 0.00 0.00 2.92
3189 5946 4.024556 CCTGCGAACTCATTGTATTCATCC 60.025 45.833 0.00 0.00 0.00 3.51
3190 5947 4.512484 TGCGAACTCATTGTATTCATCCA 58.488 39.130 0.00 0.00 0.00 3.41
3191 5948 4.332543 TGCGAACTCATTGTATTCATCCAC 59.667 41.667 0.00 0.00 0.00 4.02
3192 5949 4.332543 GCGAACTCATTGTATTCATCCACA 59.667 41.667 0.00 0.00 0.00 4.17
3193 5950 5.163764 GCGAACTCATTGTATTCATCCACAA 60.164 40.000 0.00 0.00 38.89 3.33
3194 5951 6.622679 GCGAACTCATTGTATTCATCCACAAA 60.623 38.462 0.00 0.00 38.11 2.83
3195 5952 6.963242 CGAACTCATTGTATTCATCCACAAAG 59.037 38.462 0.00 0.00 38.11 2.77
3196 5953 6.764308 ACTCATTGTATTCATCCACAAAGG 57.236 37.500 0.00 0.00 38.11 3.11
3197 5954 5.653769 ACTCATTGTATTCATCCACAAAGGG 59.346 40.000 0.00 0.00 38.11 3.95
3198 5955 4.955450 TCATTGTATTCATCCACAAAGGGG 59.045 41.667 0.00 0.00 38.11 4.79
3199 5956 4.396357 TTGTATTCATCCACAAAGGGGT 57.604 40.909 0.00 0.00 38.24 4.95
3200 5957 4.396357 TGTATTCATCCACAAAGGGGTT 57.604 40.909 0.00 0.00 38.24 4.11
3201 5958 5.522315 TGTATTCATCCACAAAGGGGTTA 57.478 39.130 0.00 0.00 38.24 2.85
3202 5959 5.258051 TGTATTCATCCACAAAGGGGTTAC 58.742 41.667 0.00 0.00 38.24 2.50
3203 5960 3.885976 TTCATCCACAAAGGGGTTACA 57.114 42.857 0.00 0.00 38.24 2.41
3204 5961 3.885976 TCATCCACAAAGGGGTTACAA 57.114 42.857 0.00 0.00 38.24 2.41
3205 5962 3.761897 TCATCCACAAAGGGGTTACAAG 58.238 45.455 0.00 0.00 38.24 3.16
3206 5963 3.139397 TCATCCACAAAGGGGTTACAAGT 59.861 43.478 0.00 0.00 38.24 3.16
3207 5964 4.351407 TCATCCACAAAGGGGTTACAAGTA 59.649 41.667 0.00 0.00 38.24 2.24
3208 5965 5.014755 TCATCCACAAAGGGGTTACAAGTAT 59.985 40.000 0.00 0.00 38.24 2.12
3209 5966 6.215841 TCATCCACAAAGGGGTTACAAGTATA 59.784 38.462 0.00 0.00 38.24 1.47
3210 5967 6.645884 TCCACAAAGGGGTTACAAGTATAT 57.354 37.500 0.00 0.00 38.24 0.86
3211 5968 7.752518 TCCACAAAGGGGTTACAAGTATATA 57.247 36.000 0.00 0.00 38.24 0.86
3212 5969 8.160434 TCCACAAAGGGGTTACAAGTATATAA 57.840 34.615 0.00 0.00 38.24 0.98
3213 5970 8.269317 TCCACAAAGGGGTTACAAGTATATAAG 58.731 37.037 0.00 0.00 38.24 1.73
3214 5971 8.269317 CCACAAAGGGGTTACAAGTATATAAGA 58.731 37.037 0.00 0.00 0.00 2.10
3215 5972 9.675464 CACAAAGGGGTTACAAGTATATAAGAA 57.325 33.333 0.00 0.00 0.00 2.52
3216 5973 9.901172 ACAAAGGGGTTACAAGTATATAAGAAG 57.099 33.333 0.00 0.00 0.00 2.85
3219 5976 9.503369 AAGGGGTTACAAGTATATAAGAAGAGT 57.497 33.333 0.00 0.00 0.00 3.24
3234 5991 6.620877 AAGAAGAGTACAGAGAGAGAGAGA 57.379 41.667 0.00 0.00 0.00 3.10
3235 5992 6.227298 AGAAGAGTACAGAGAGAGAGAGAG 57.773 45.833 0.00 0.00 0.00 3.20
3236 5993 5.958380 AGAAGAGTACAGAGAGAGAGAGAGA 59.042 44.000 0.00 0.00 0.00 3.10
3237 5994 5.860941 AGAGTACAGAGAGAGAGAGAGAG 57.139 47.826 0.00 0.00 0.00 3.20
3238 5995 5.273208 AGAGTACAGAGAGAGAGAGAGAGT 58.727 45.833 0.00 0.00 0.00 3.24
3239 5996 6.432581 AGAGTACAGAGAGAGAGAGAGAGTA 58.567 44.000 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.610086 ACCCACCCACCATGCATTG 60.610 57.895 0.00 0.00 0.00 2.82
1 2 1.610086 CACCCACCCACCATGCATT 60.610 57.895 0.00 0.00 0.00 3.56
2 3 2.037687 CACCCACCCACCATGCAT 59.962 61.111 0.00 0.00 0.00 3.96
3 4 3.506743 ACACCCACCCACCATGCA 61.507 61.111 0.00 0.00 0.00 3.96
4 5 2.990967 CACACCCACCCACCATGC 60.991 66.667 0.00 0.00 0.00 4.06
5 6 2.283101 CCACACCCACCCACCATG 60.283 66.667 0.00 0.00 0.00 3.66
6 7 3.589542 CCCACACCCACCCACCAT 61.590 66.667 0.00 0.00 0.00 3.55
7 8 4.845307 TCCCACACCCACCCACCA 62.845 66.667 0.00 0.00 0.00 4.17
8 9 3.966543 CTCCCACACCCACCCACC 61.967 72.222 0.00 0.00 0.00 4.61
9 10 3.966543 CCTCCCACACCCACCCAC 61.967 72.222 0.00 0.00 0.00 4.61
46 47 2.397044 AAGGCCCAAACCAAATCTGA 57.603 45.000 0.00 0.00 0.00 3.27
56 57 4.386312 CCCTATGTGATCTTAAGGCCCAAA 60.386 45.833 0.00 0.00 0.00 3.28
109 110 2.166664 AGAGTGCACTAGATCGGGTTTC 59.833 50.000 21.73 2.50 0.00 2.78
115 116 3.379240 CAATCCAGAGTGCACTAGATCG 58.621 50.000 21.73 8.37 0.00 3.69
121 122 0.326264 GACCCAATCCAGAGTGCACT 59.674 55.000 21.88 21.88 0.00 4.40
206 223 4.021192 TGCATTCTCAGAGACACACACATA 60.021 41.667 0.00 0.00 0.00 2.29
220 237 1.078918 CGTGGCCTCTGCATTCTCA 60.079 57.895 3.32 0.00 40.13 3.27
340 357 6.307077 GGTTCAAATACAAACTTGATTACGCC 59.693 38.462 0.00 0.00 31.85 5.68
346 363 9.088987 AGTAATGGGTTCAAATACAAACTTGAT 57.911 29.630 0.00 0.00 31.85 2.57
349 366 8.520351 GCTAGTAATGGGTTCAAATACAAACTT 58.480 33.333 0.00 0.00 0.00 2.66
410 433 9.083422 TGTGTCATATTATCTCCCTCTTCTTAG 57.917 37.037 0.00 0.00 0.00 2.18
411 434 9.607333 ATGTGTCATATTATCTCCCTCTTCTTA 57.393 33.333 0.00 0.00 0.00 2.10
412 435 7.921041 TGTGTCATATTATCTCCCTCTTCTT 57.079 36.000 0.00 0.00 0.00 2.52
427 450 8.830580 GCAGAAGTTGTGTATAATGTGTCATAT 58.169 33.333 1.56 0.00 0.00 1.78
428 451 7.010091 CGCAGAAGTTGTGTATAATGTGTCATA 59.990 37.037 1.56 0.00 32.55 2.15
867 987 3.922171 ATAGCCAGAAGAGGTTTGGAG 57.078 47.619 0.00 0.00 33.76 3.86
868 988 8.762645 CATATATATAGCCAGAAGAGGTTTGGA 58.237 37.037 0.00 0.00 33.76 3.53
869 989 8.543774 ACATATATATAGCCAGAAGAGGTTTGG 58.456 37.037 0.00 0.00 35.06 3.28
899 1021 2.224744 TGCAAGAGAACCATACCAGCAA 60.225 45.455 0.00 0.00 0.00 3.91
980 1119 5.739358 GCCATCGCTAATCTAAACCACTAGT 60.739 44.000 0.00 0.00 0.00 2.57
1105 1244 2.228582 CCGCAGTTTGGATGATGAACAA 59.771 45.455 0.00 0.00 0.00 2.83
1179 1318 1.134521 ACAAAGCAGTCGTGGAAGTGA 60.135 47.619 0.00 0.00 0.00 3.41
1318 2555 2.600769 ACGAAGCTCCCCGTGTCT 60.601 61.111 7.77 0.00 37.64 3.41
1378 2615 3.993736 TGATGTTGTCGATGACGTTCATT 59.006 39.130 0.00 0.00 37.20 2.57
1420 2657 2.807045 GAGACGGTCTGCGTGCAG 60.807 66.667 16.72 15.59 44.86 4.41
1536 2781 5.530915 CCACAACCAAGAAAGTAGAATCACA 59.469 40.000 0.00 0.00 0.00 3.58
1564 3179 7.601856 TCCCAGCTACACAGAATTTTAATTTG 58.398 34.615 0.00 0.00 0.00 2.32
1581 3207 1.619363 ATGTTGGCCCTCCCAGCTA 60.619 57.895 0.00 0.00 46.39 3.32
1631 3257 0.109597 CATTGGTCTTGCTTGCGGTC 60.110 55.000 0.00 0.00 0.00 4.79
1664 3290 1.328430 GGTCGAAGGTAGGAGGTGGG 61.328 65.000 0.00 0.00 0.00 4.61
1701 3327 2.427410 CTGCTTGTTGGCGAACGC 60.427 61.111 10.81 10.81 41.06 4.84
1727 3353 0.250467 AGAGCGCAACCATGTCTGTT 60.250 50.000 11.47 0.00 0.00 3.16
1765 3391 8.909671 GTTTCAGTTCAATCATGATTCAAACTC 58.090 33.333 27.54 18.89 34.33 3.01
1766 3392 8.636213 AGTTTCAGTTCAATCATGATTCAAACT 58.364 29.630 26.01 26.01 35.71 2.66
1781 3407 8.810427 CGTTGTACTAGTAAAAGTTTCAGTTCA 58.190 33.333 5.71 0.00 0.00 3.18
1782 3408 8.271487 CCGTTGTACTAGTAAAAGTTTCAGTTC 58.729 37.037 5.71 0.00 0.00 3.01
1783 3409 7.254556 GCCGTTGTACTAGTAAAAGTTTCAGTT 60.255 37.037 5.71 0.00 0.00 3.16
1785 3411 6.423001 AGCCGTTGTACTAGTAAAAGTTTCAG 59.577 38.462 5.71 0.00 0.00 3.02
1787 3413 6.399354 CGAGCCGTTGTACTAGTAAAAGTTTC 60.399 42.308 5.71 2.16 0.00 2.78
1788 3414 5.403466 CGAGCCGTTGTACTAGTAAAAGTTT 59.597 40.000 5.71 0.00 0.00 2.66
1789 3415 4.919754 CGAGCCGTTGTACTAGTAAAAGTT 59.080 41.667 5.71 0.00 0.00 2.66
1790 3416 4.479619 CGAGCCGTTGTACTAGTAAAAGT 58.520 43.478 5.71 0.00 0.00 2.66
1791 3417 3.302699 GCGAGCCGTTGTACTAGTAAAAG 59.697 47.826 5.71 5.15 0.00 2.27
1792 3418 3.057315 AGCGAGCCGTTGTACTAGTAAAA 60.057 43.478 3.61 2.24 0.00 1.52
1819 3454 1.992170 ACGTGTCAGAATTAGCGTCC 58.008 50.000 0.00 0.00 0.00 4.79
1823 3458 3.246226 CAGCCATACGTGTCAGAATTAGC 59.754 47.826 0.00 0.00 0.00 3.09
1824 3459 4.268644 CACAGCCATACGTGTCAGAATTAG 59.731 45.833 0.00 0.00 0.00 1.73
1825 3460 4.180817 CACAGCCATACGTGTCAGAATTA 58.819 43.478 0.00 0.00 0.00 1.40
1826 3461 3.002791 CACAGCCATACGTGTCAGAATT 58.997 45.455 0.00 0.00 0.00 2.17
1835 3470 2.436646 GCCTGCACAGCCATACGT 60.437 61.111 0.00 0.00 0.00 3.57
1836 3471 3.566853 CGCCTGCACAGCCATACG 61.567 66.667 0.00 0.00 0.00 3.06
1837 3472 3.880846 GCGCCTGCACAGCCATAC 61.881 66.667 0.00 0.00 42.15 2.39
2011 3689 2.669434 GCTGTAATAGGCGTTGTCGAAA 59.331 45.455 0.00 0.00 39.71 3.46
2044 3722 1.222113 GTGTAGGAGCCCCTTCTGC 59.778 63.158 0.00 0.00 40.78 4.26
2128 3806 0.884704 AGGCGTTGTTGAATGTCGCT 60.885 50.000 7.69 0.00 45.01 4.93
2155 3833 0.920763 TCCCCATCTTCACCATGGCT 60.921 55.000 13.04 0.00 39.78 4.75
2179 3857 2.281484 GTCCCAGTCTTTGGCGCA 60.281 61.111 10.83 0.00 46.32 6.09
2275 3953 8.344831 CGAGACCTTATTTAATTCATTCATGCA 58.655 33.333 0.00 0.00 0.00 3.96
2311 3995 2.086869 GTACTCGTAGGTGCTGGTACA 58.913 52.381 0.00 0.00 32.50 2.90
2312 3996 1.063174 CGTACTCGTAGGTGCTGGTAC 59.937 57.143 0.00 0.00 0.00 3.34
2347 4032 2.926420 AATTTCCAACCACGCGCCC 61.926 57.895 5.73 0.00 0.00 6.13
2352 4041 4.286910 CACAAGTACAATTTCCAACCACG 58.713 43.478 0.00 0.00 0.00 4.94
2384 4073 7.602644 ACGAGAATTTGTTACACATGTGTAGAT 59.397 33.333 31.44 22.19 45.57 1.98
2422 4113 7.552687 TGTCATAGATAAAAGGAAGCAATTCGT 59.447 33.333 0.00 0.00 0.00 3.85
2423 4114 7.919690 TGTCATAGATAAAAGGAAGCAATTCG 58.080 34.615 0.00 0.00 0.00 3.34
2425 4116 9.638176 AGATGTCATAGATAAAAGGAAGCAATT 57.362 29.630 0.00 0.00 0.00 2.32
2449 4140 8.687242 CCAGATAGTAACATCTCAAAGTACAGA 58.313 37.037 0.00 0.00 32.83 3.41
2475 4177 1.818642 AGACTTCAAGTGGCAGATGC 58.181 50.000 0.00 0.00 41.14 3.91
2478 4180 4.134563 GGTTAAAGACTTCAAGTGGCAGA 58.865 43.478 0.00 0.00 0.00 4.26
2481 4183 3.487372 AGGGTTAAAGACTTCAAGTGGC 58.513 45.455 0.00 0.00 0.00 5.01
2482 4184 4.974399 AGAGGGTTAAAGACTTCAAGTGG 58.026 43.478 0.00 0.00 0.00 4.00
2483 4185 4.998033 GGAGAGGGTTAAAGACTTCAAGTG 59.002 45.833 0.00 0.00 0.00 3.16
2485 4187 4.998033 GTGGAGAGGGTTAAAGACTTCAAG 59.002 45.833 0.00 0.00 0.00 3.02
2486 4188 4.502604 CGTGGAGAGGGTTAAAGACTTCAA 60.503 45.833 0.00 0.00 0.00 2.69
2487 4189 3.006537 CGTGGAGAGGGTTAAAGACTTCA 59.993 47.826 0.00 0.00 0.00 3.02
2488 4190 3.586892 CGTGGAGAGGGTTAAAGACTTC 58.413 50.000 0.00 0.00 0.00 3.01
2489 4191 2.302157 CCGTGGAGAGGGTTAAAGACTT 59.698 50.000 0.00 0.00 0.00 3.01
2490 4192 1.900486 CCGTGGAGAGGGTTAAAGACT 59.100 52.381 0.00 0.00 0.00 3.24
2491 4193 1.066358 CCCGTGGAGAGGGTTAAAGAC 60.066 57.143 0.00 0.00 43.89 3.01
2493 4195 3.855159 CCCGTGGAGAGGGTTAAAG 57.145 57.895 0.00 0.00 43.89 1.85
2511 5251 4.700365 GCCAACAAAGACCGCCGC 62.700 66.667 0.00 0.00 0.00 6.53
2522 5262 1.687660 AGTGACATTTGCATGCCAACA 59.312 42.857 16.68 2.07 33.05 3.33
2528 5268 1.475280 CCCTCCAGTGACATTTGCATG 59.525 52.381 0.00 0.00 36.34 4.06
2541 5281 1.902508 TCTGTGAAAGCTACCCTCCAG 59.097 52.381 0.00 0.00 0.00 3.86
2551 5291 1.318158 CCCTGCCCATCTGTGAAAGC 61.318 60.000 0.00 0.00 0.00 3.51
2554 5294 0.920763 ATCCCCTGCCCATCTGTGAA 60.921 55.000 0.00 0.00 0.00 3.18
2559 5299 1.486997 CGATCATCCCCTGCCCATCT 61.487 60.000 0.00 0.00 0.00 2.90
2591 5331 1.283347 ACTGATGGACATCACCTGCT 58.717 50.000 10.75 0.00 42.42 4.24
2610 5350 8.332996 AGTGTCTCGTCACTAGTTATTTCTTA 57.667 34.615 0.00 0.00 45.31 2.10
2679 5433 9.685828 GTGGAACTTTGTTTAAAGCAATATACA 57.314 29.630 0.00 0.00 45.72 2.29
2711 5465 1.202604 CGGCCTGGAATGTACCGTAAT 60.203 52.381 0.00 0.00 39.05 1.89
2719 5473 0.394352 GATGGAACGGCCTGGAATGT 60.394 55.000 0.00 0.00 37.63 2.71
2812 5569 2.414612 TCAACCCTTGAAGTACACCCT 58.585 47.619 0.00 0.00 36.59 4.34
2813 5570 2.943036 TCAACCCTTGAAGTACACCC 57.057 50.000 0.00 0.00 36.59 4.61
2858 5615 1.400494 GTGACTGTCGCACACCTTTTT 59.600 47.619 15.99 0.00 36.31 1.94
2859 5616 1.014352 GTGACTGTCGCACACCTTTT 58.986 50.000 15.99 0.00 36.31 2.27
2860 5617 0.107897 TGTGACTGTCGCACACCTTT 60.108 50.000 19.29 0.00 41.00 3.11
2861 5618 0.107897 TTGTGACTGTCGCACACCTT 60.108 50.000 22.50 0.00 45.10 3.50
2862 5619 0.530650 CTTGTGACTGTCGCACACCT 60.531 55.000 22.50 0.00 45.10 4.00
2863 5620 0.529773 TCTTGTGACTGTCGCACACC 60.530 55.000 22.50 0.00 45.10 4.16
2864 5621 1.286501 TTCTTGTGACTGTCGCACAC 58.713 50.000 22.50 6.96 45.10 3.82
2865 5622 2.017138 TTTCTTGTGACTGTCGCACA 57.983 45.000 22.50 10.62 43.89 4.57
2866 5623 2.908634 CATTTCTTGTGACTGTCGCAC 58.091 47.619 22.50 8.03 36.51 5.34
2867 5624 1.264020 GCATTTCTTGTGACTGTCGCA 59.736 47.619 19.29 19.29 34.72 5.10
2868 5625 1.532868 AGCATTTCTTGTGACTGTCGC 59.467 47.619 14.19 14.19 0.00 5.19
2869 5626 3.548587 CAAGCATTTCTTGTGACTGTCG 58.451 45.455 2.98 0.00 45.48 4.35
2879 5636 4.464008 TGAGAGGTGTTCAAGCATTTCTT 58.536 39.130 0.00 0.00 34.78 2.52
2880 5637 4.090761 TGAGAGGTGTTCAAGCATTTCT 57.909 40.909 0.00 0.00 0.00 2.52
2881 5638 5.163713 GGTATGAGAGGTGTTCAAGCATTTC 60.164 44.000 0.00 0.00 0.00 2.17
2882 5639 4.702131 GGTATGAGAGGTGTTCAAGCATTT 59.298 41.667 0.00 0.00 0.00 2.32
2883 5640 4.018960 AGGTATGAGAGGTGTTCAAGCATT 60.019 41.667 0.00 0.00 0.00 3.56
2884 5641 3.521126 AGGTATGAGAGGTGTTCAAGCAT 59.479 43.478 0.00 0.00 0.00 3.79
2885 5642 2.906389 AGGTATGAGAGGTGTTCAAGCA 59.094 45.455 0.00 0.00 0.00 3.91
2886 5643 3.618690 AGGTATGAGAGGTGTTCAAGC 57.381 47.619 0.00 0.00 0.00 4.01
2887 5644 4.141914 GGGTAGGTATGAGAGGTGTTCAAG 60.142 50.000 0.00 0.00 0.00 3.02
2888 5645 3.773119 GGGTAGGTATGAGAGGTGTTCAA 59.227 47.826 0.00 0.00 0.00 2.69
2889 5646 3.012502 AGGGTAGGTATGAGAGGTGTTCA 59.987 47.826 0.00 0.00 0.00 3.18
2890 5647 3.385111 CAGGGTAGGTATGAGAGGTGTTC 59.615 52.174 0.00 0.00 0.00 3.18
2891 5648 3.375699 CAGGGTAGGTATGAGAGGTGTT 58.624 50.000 0.00 0.00 0.00 3.32
2892 5649 2.359355 CCAGGGTAGGTATGAGAGGTGT 60.359 54.545 0.00 0.00 0.00 4.16
2893 5650 2.091278 TCCAGGGTAGGTATGAGAGGTG 60.091 54.545 0.00 0.00 0.00 4.00
2894 5651 2.224077 TCCAGGGTAGGTATGAGAGGT 58.776 52.381 0.00 0.00 0.00 3.85
2895 5652 3.330126 TTCCAGGGTAGGTATGAGAGG 57.670 52.381 0.00 0.00 0.00 3.69
2896 5653 3.388350 GGTTTCCAGGGTAGGTATGAGAG 59.612 52.174 0.00 0.00 0.00 3.20
2897 5654 3.381335 GGTTTCCAGGGTAGGTATGAGA 58.619 50.000 0.00 0.00 0.00 3.27
2898 5655 2.438392 GGGTTTCCAGGGTAGGTATGAG 59.562 54.545 0.00 0.00 0.00 2.90
2899 5656 2.225934 TGGGTTTCCAGGGTAGGTATGA 60.226 50.000 0.00 0.00 38.32 2.15
2900 5657 2.201830 TGGGTTTCCAGGGTAGGTATG 58.798 52.381 0.00 0.00 38.32 2.39
2901 5658 2.672703 TGGGTTTCCAGGGTAGGTAT 57.327 50.000 0.00 0.00 38.32 2.73
2911 5668 0.823356 GTTGAGCTGCTGGGTTTCCA 60.823 55.000 7.01 0.00 41.58 3.53
2912 5669 1.527433 GGTTGAGCTGCTGGGTTTCC 61.527 60.000 7.01 0.00 0.00 3.13
2913 5670 0.538287 AGGTTGAGCTGCTGGGTTTC 60.538 55.000 7.01 0.00 0.00 2.78
2914 5671 0.538287 GAGGTTGAGCTGCTGGGTTT 60.538 55.000 7.01 0.00 0.00 3.27
2915 5672 1.073897 GAGGTTGAGCTGCTGGGTT 59.926 57.895 7.01 0.00 0.00 4.11
2916 5673 1.495579 ATGAGGTTGAGCTGCTGGGT 61.496 55.000 7.01 0.00 0.00 4.51
2917 5674 0.747283 GATGAGGTTGAGCTGCTGGG 60.747 60.000 7.01 0.00 0.00 4.45
2918 5675 0.035725 TGATGAGGTTGAGCTGCTGG 60.036 55.000 7.01 0.00 0.00 4.85
2919 5676 1.671328 CATGATGAGGTTGAGCTGCTG 59.329 52.381 7.01 0.00 0.00 4.41
2920 5677 1.281287 ACATGATGAGGTTGAGCTGCT 59.719 47.619 0.00 0.00 0.00 4.24
2921 5678 1.747709 ACATGATGAGGTTGAGCTGC 58.252 50.000 0.00 0.00 0.00 5.25
2922 5679 4.134379 ACTACATGATGAGGTTGAGCTG 57.866 45.455 0.00 0.00 0.00 4.24
2923 5680 5.939764 TTACTACATGATGAGGTTGAGCT 57.060 39.130 0.00 0.00 0.00 4.09
2924 5681 6.203723 GGATTTACTACATGATGAGGTTGAGC 59.796 42.308 0.00 0.00 0.00 4.26
2925 5682 7.275183 TGGATTTACTACATGATGAGGTTGAG 58.725 38.462 0.00 0.00 0.00 3.02
2926 5683 7.194112 TGGATTTACTACATGATGAGGTTGA 57.806 36.000 0.00 0.00 0.00 3.18
2927 5684 7.465916 CGTTGGATTTACTACATGATGAGGTTG 60.466 40.741 0.00 0.00 0.00 3.77
2928 5685 6.538742 CGTTGGATTTACTACATGATGAGGTT 59.461 38.462 0.00 0.00 0.00 3.50
2929 5686 6.049149 CGTTGGATTTACTACATGATGAGGT 58.951 40.000 0.00 0.00 0.00 3.85
2930 5687 5.466728 CCGTTGGATTTACTACATGATGAGG 59.533 44.000 0.00 0.00 0.00 3.86
2931 5688 5.050091 GCCGTTGGATTTACTACATGATGAG 60.050 44.000 0.00 0.00 0.00 2.90
2932 5689 4.814234 GCCGTTGGATTTACTACATGATGA 59.186 41.667 0.00 0.00 0.00 2.92
2933 5690 4.318760 CGCCGTTGGATTTACTACATGATG 60.319 45.833 0.00 0.00 0.00 3.07
2934 5691 3.807622 CGCCGTTGGATTTACTACATGAT 59.192 43.478 0.00 0.00 0.00 2.45
2935 5692 3.191669 CGCCGTTGGATTTACTACATGA 58.808 45.455 0.00 0.00 0.00 3.07
2936 5693 2.286833 CCGCCGTTGGATTTACTACATG 59.713 50.000 0.00 0.00 0.00 3.21
2937 5694 2.168936 TCCGCCGTTGGATTTACTACAT 59.831 45.455 0.00 0.00 31.53 2.29
2938 5695 1.549620 TCCGCCGTTGGATTTACTACA 59.450 47.619 0.00 0.00 31.53 2.74
2939 5696 2.199236 CTCCGCCGTTGGATTTACTAC 58.801 52.381 0.00 0.00 37.41 2.73
2940 5697 1.472026 GCTCCGCCGTTGGATTTACTA 60.472 52.381 0.00 0.00 37.41 1.82
2941 5698 0.743345 GCTCCGCCGTTGGATTTACT 60.743 55.000 0.00 0.00 37.41 2.24
2942 5699 0.743345 AGCTCCGCCGTTGGATTTAC 60.743 55.000 0.00 0.00 37.41 2.01
2943 5700 0.825410 TAGCTCCGCCGTTGGATTTA 59.175 50.000 0.00 0.00 37.41 1.40
2944 5701 0.180406 ATAGCTCCGCCGTTGGATTT 59.820 50.000 0.00 0.00 37.41 2.17
2945 5702 0.532862 CATAGCTCCGCCGTTGGATT 60.533 55.000 0.00 0.00 37.41 3.01
2946 5703 1.069765 CATAGCTCCGCCGTTGGAT 59.930 57.895 0.00 0.00 37.41 3.41
2947 5704 1.895020 AACATAGCTCCGCCGTTGGA 61.895 55.000 0.00 0.00 36.37 3.53
2948 5705 0.179094 TAACATAGCTCCGCCGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
2949 5706 1.526887 CATAACATAGCTCCGCCGTTG 59.473 52.381 0.00 0.00 0.00 4.10
2950 5707 1.411246 TCATAACATAGCTCCGCCGTT 59.589 47.619 0.00 0.00 0.00 4.44
2951 5708 1.037493 TCATAACATAGCTCCGCCGT 58.963 50.000 0.00 0.00 0.00 5.68
2952 5709 1.419374 GTCATAACATAGCTCCGCCG 58.581 55.000 0.00 0.00 0.00 6.46
2953 5710 1.344763 AGGTCATAACATAGCTCCGCC 59.655 52.381 0.00 0.00 0.00 6.13
2954 5711 2.035961 TCAGGTCATAACATAGCTCCGC 59.964 50.000 0.00 0.00 0.00 5.54
2955 5712 3.305676 CCTCAGGTCATAACATAGCTCCG 60.306 52.174 0.00 0.00 0.00 4.63
2956 5713 3.007398 CCCTCAGGTCATAACATAGCTCC 59.993 52.174 0.00 0.00 0.00 4.70
2957 5714 3.007398 CCCCTCAGGTCATAACATAGCTC 59.993 52.174 0.00 0.00 0.00 4.09
2958 5715 2.975489 CCCCTCAGGTCATAACATAGCT 59.025 50.000 0.00 0.00 0.00 3.32
2959 5716 2.039084 CCCCCTCAGGTCATAACATAGC 59.961 54.545 0.00 0.00 0.00 2.97
2960 5717 2.039084 GCCCCCTCAGGTCATAACATAG 59.961 54.545 0.00 0.00 0.00 2.23
2961 5718 2.054799 GCCCCCTCAGGTCATAACATA 58.945 52.381 0.00 0.00 0.00 2.29
2962 5719 0.846693 GCCCCCTCAGGTCATAACAT 59.153 55.000 0.00 0.00 0.00 2.71
2963 5720 1.279025 GGCCCCCTCAGGTCATAACA 61.279 60.000 0.00 0.00 0.00 2.41
2964 5721 1.532238 GGCCCCCTCAGGTCATAAC 59.468 63.158 0.00 0.00 0.00 1.89
2965 5722 2.070039 CGGCCCCCTCAGGTCATAA 61.070 63.158 0.00 0.00 0.00 1.90
2966 5723 2.445845 CGGCCCCCTCAGGTCATA 60.446 66.667 0.00 0.00 0.00 2.15
2967 5724 4.741239 ACGGCCCCCTCAGGTCAT 62.741 66.667 0.00 0.00 0.00 3.06
2988 5745 1.191489 AAAATCGTTTGGGCTGGGGG 61.191 55.000 0.00 0.00 0.00 5.40
2989 5746 1.551452 TAAAATCGTTTGGGCTGGGG 58.449 50.000 0.00 0.00 0.00 4.96
2990 5747 3.885724 AATAAAATCGTTTGGGCTGGG 57.114 42.857 0.00 0.00 0.00 4.45
2991 5748 4.815269 TGAAATAAAATCGTTTGGGCTGG 58.185 39.130 0.00 0.00 0.00 4.85
2992 5749 6.966435 AATGAAATAAAATCGTTTGGGCTG 57.034 33.333 0.00 0.00 0.00 4.85
2993 5750 7.836842 AGTAATGAAATAAAATCGTTTGGGCT 58.163 30.769 0.00 0.00 0.00 5.19
2994 5751 9.016623 GTAGTAATGAAATAAAATCGTTTGGGC 57.983 33.333 0.00 0.00 0.00 5.36
3007 5764 8.857098 CCACTGCTACCTAGTAGTAATGAAATA 58.143 37.037 3.10 0.00 45.50 1.40
3008 5765 7.687103 GCCACTGCTACCTAGTAGTAATGAAAT 60.687 40.741 3.10 0.00 45.50 2.17
3009 5766 6.406624 GCCACTGCTACCTAGTAGTAATGAAA 60.407 42.308 3.10 0.00 45.50 2.69
3010 5767 5.068723 GCCACTGCTACCTAGTAGTAATGAA 59.931 44.000 3.10 0.00 45.50 2.57
3011 5768 4.583489 GCCACTGCTACCTAGTAGTAATGA 59.417 45.833 3.10 0.00 45.50 2.57
3012 5769 4.262079 GGCCACTGCTACCTAGTAGTAATG 60.262 50.000 0.00 0.00 45.50 1.90
3013 5770 3.896272 GGCCACTGCTACCTAGTAGTAAT 59.104 47.826 0.00 0.00 45.50 1.89
3014 5771 3.294214 GGCCACTGCTACCTAGTAGTAA 58.706 50.000 0.00 0.00 45.50 2.24
3015 5772 2.423947 GGGCCACTGCTACCTAGTAGTA 60.424 54.545 4.39 0.00 45.50 1.82
3017 5774 1.041437 GGGCCACTGCTACCTAGTAG 58.959 60.000 4.39 0.00 41.13 2.57
3018 5775 0.398098 GGGGCCACTGCTACCTAGTA 60.398 60.000 4.39 0.00 37.74 1.82
3019 5776 1.689582 GGGGCCACTGCTACCTAGT 60.690 63.158 4.39 0.00 37.74 2.57
3020 5777 1.383248 AGGGGCCACTGCTACCTAG 60.383 63.158 6.78 0.00 41.08 3.02
3021 5778 1.689233 CAGGGGCCACTGCTACCTA 60.689 63.158 25.05 0.00 40.99 3.08
3022 5779 3.011517 CAGGGGCCACTGCTACCT 61.012 66.667 25.05 5.14 42.76 3.08
3040 5797 3.670637 TAAGCCGAGCTGCAGCCAG 62.671 63.158 34.39 26.61 39.62 4.85
3041 5798 2.541547 ATTAAGCCGAGCTGCAGCCA 62.542 55.000 34.39 9.72 39.62 4.75
3042 5799 1.780025 GATTAAGCCGAGCTGCAGCC 61.780 60.000 34.39 23.65 39.62 4.85
3043 5800 1.645997 GATTAAGCCGAGCTGCAGC 59.354 57.895 31.53 31.53 39.62 5.25
3044 5801 0.462581 TGGATTAAGCCGAGCTGCAG 60.463 55.000 10.11 10.11 39.62 4.41
3045 5802 0.181114 ATGGATTAAGCCGAGCTGCA 59.819 50.000 5.08 0.00 39.62 4.41
3046 5803 0.871057 GATGGATTAAGCCGAGCTGC 59.129 55.000 5.08 0.00 39.62 5.25
3047 5804 2.540265 AGATGGATTAAGCCGAGCTG 57.460 50.000 5.08 0.00 39.62 4.24
3048 5805 2.435805 TGAAGATGGATTAAGCCGAGCT 59.564 45.455 5.08 0.00 42.56 4.09
3049 5806 2.545946 GTGAAGATGGATTAAGCCGAGC 59.454 50.000 5.08 0.00 0.00 5.03
3050 5807 2.797156 CGTGAAGATGGATTAAGCCGAG 59.203 50.000 5.08 0.00 0.00 4.63
3051 5808 2.821546 CGTGAAGATGGATTAAGCCGA 58.178 47.619 5.08 0.00 0.00 5.54
3052 5809 1.261619 GCGTGAAGATGGATTAAGCCG 59.738 52.381 5.08 0.00 0.00 5.52
3053 5810 2.032178 GTGCGTGAAGATGGATTAAGCC 59.968 50.000 1.79 1.79 0.00 4.35
3054 5811 2.677836 TGTGCGTGAAGATGGATTAAGC 59.322 45.455 0.00 0.00 0.00 3.09
3055 5812 3.935203 ACTGTGCGTGAAGATGGATTAAG 59.065 43.478 0.00 0.00 0.00 1.85
3056 5813 3.684305 CACTGTGCGTGAAGATGGATTAA 59.316 43.478 0.00 0.00 46.81 1.40
3057 5814 3.261580 CACTGTGCGTGAAGATGGATTA 58.738 45.455 0.00 0.00 46.81 1.75
3058 5815 2.079158 CACTGTGCGTGAAGATGGATT 58.921 47.619 0.00 0.00 46.81 3.01
3059 5816 1.730501 CACTGTGCGTGAAGATGGAT 58.269 50.000 0.00 0.00 46.81 3.41
3060 5817 0.950555 GCACTGTGCGTGAAGATGGA 60.951 55.000 17.93 0.00 46.81 3.41
3061 5818 1.499056 GCACTGTGCGTGAAGATGG 59.501 57.895 17.93 0.00 46.81 3.51
3071 5828 1.655350 GTTCGTTGCTGCACTGTGC 60.655 57.895 25.15 25.15 45.29 4.57
3072 5829 1.217001 TAGTTCGTTGCTGCACTGTG 58.783 50.000 0.00 2.76 0.00 3.66
3073 5830 1.597663 GTTAGTTCGTTGCTGCACTGT 59.402 47.619 0.00 0.00 0.00 3.55
3074 5831 1.069906 GGTTAGTTCGTTGCTGCACTG 60.070 52.381 0.00 0.00 0.00 3.66
3075 5832 1.226746 GGTTAGTTCGTTGCTGCACT 58.773 50.000 0.00 0.00 0.00 4.40
3076 5833 0.237498 GGGTTAGTTCGTTGCTGCAC 59.763 55.000 0.00 0.00 0.00 4.57
3077 5834 0.179043 TGGGTTAGTTCGTTGCTGCA 60.179 50.000 0.00 0.00 0.00 4.41
3078 5835 1.130561 GATGGGTTAGTTCGTTGCTGC 59.869 52.381 0.00 0.00 0.00 5.25
3079 5836 2.699954 AGATGGGTTAGTTCGTTGCTG 58.300 47.619 0.00 0.00 0.00 4.41
3080 5837 3.244422 TGAAGATGGGTTAGTTCGTTGCT 60.244 43.478 0.00 0.00 0.00 3.91
3081 5838 3.071479 TGAAGATGGGTTAGTTCGTTGC 58.929 45.455 0.00 0.00 0.00 4.17
3082 5839 3.684788 CCTGAAGATGGGTTAGTTCGTTG 59.315 47.826 0.00 0.00 0.00 4.10
3083 5840 3.868754 GCCTGAAGATGGGTTAGTTCGTT 60.869 47.826 0.00 0.00 0.00 3.85
3084 5841 2.354805 GCCTGAAGATGGGTTAGTTCGT 60.355 50.000 0.00 0.00 0.00 3.85
3085 5842 2.280628 GCCTGAAGATGGGTTAGTTCG 58.719 52.381 0.00 0.00 0.00 3.95
3086 5843 3.010420 GTGCCTGAAGATGGGTTAGTTC 58.990 50.000 0.00 0.00 0.00 3.01
3087 5844 2.375174 TGTGCCTGAAGATGGGTTAGTT 59.625 45.455 0.00 0.00 0.00 2.24
3088 5845 1.985159 TGTGCCTGAAGATGGGTTAGT 59.015 47.619 0.00 0.00 0.00 2.24
3089 5846 2.787473 TGTGCCTGAAGATGGGTTAG 57.213 50.000 0.00 0.00 0.00 2.34
3090 5847 2.945440 GCATGTGCCTGAAGATGGGTTA 60.945 50.000 0.00 0.00 34.31 2.85
3091 5848 1.843368 CATGTGCCTGAAGATGGGTT 58.157 50.000 0.00 0.00 0.00 4.11
3092 5849 0.682209 GCATGTGCCTGAAGATGGGT 60.682 55.000 0.00 0.00 34.31 4.51
3093 5850 0.395311 AGCATGTGCCTGAAGATGGG 60.395 55.000 0.57 0.00 43.38 4.00
3094 5851 1.404391 GAAGCATGTGCCTGAAGATGG 59.596 52.381 0.57 0.00 43.38 3.51
3095 5852 2.355132 GAGAAGCATGTGCCTGAAGATG 59.645 50.000 0.57 0.00 43.38 2.90
3096 5853 2.026542 TGAGAAGCATGTGCCTGAAGAT 60.027 45.455 0.57 0.00 43.38 2.40
3097 5854 1.348696 TGAGAAGCATGTGCCTGAAGA 59.651 47.619 0.57 0.00 43.38 2.87
3098 5855 1.738350 CTGAGAAGCATGTGCCTGAAG 59.262 52.381 0.57 0.00 43.38 3.02
3099 5856 1.817357 CTGAGAAGCATGTGCCTGAA 58.183 50.000 0.57 0.00 43.38 3.02
3100 5857 0.675837 GCTGAGAAGCATGTGCCTGA 60.676 55.000 0.57 0.00 43.38 3.86
3101 5858 0.677098 AGCTGAGAAGCATGTGCCTG 60.677 55.000 0.57 0.00 43.38 4.85
3102 5859 0.392729 GAGCTGAGAAGCATGTGCCT 60.393 55.000 0.00 0.00 43.38 4.75
3103 5860 0.675837 TGAGCTGAGAAGCATGTGCC 60.676 55.000 0.00 0.00 43.38 5.01
3104 5861 1.064208 CATGAGCTGAGAAGCATGTGC 59.936 52.381 0.00 0.00 42.49 4.57
3105 5862 2.357075 ACATGAGCTGAGAAGCATGTG 58.643 47.619 13.84 0.00 46.69 3.21
3106 5863 2.783609 ACATGAGCTGAGAAGCATGT 57.216 45.000 9.91 9.91 44.54 3.21
3107 5864 2.096013 CACACATGAGCTGAGAAGCATG 59.904 50.000 0.00 8.78 42.75 4.06
3108 5865 2.290134 ACACACATGAGCTGAGAAGCAT 60.290 45.455 0.00 0.00 37.25 3.79
3109 5866 1.071228 ACACACATGAGCTGAGAAGCA 59.929 47.619 0.00 0.00 37.25 3.91
3110 5867 1.805869 ACACACATGAGCTGAGAAGC 58.194 50.000 0.00 0.00 0.00 3.86
3111 5868 6.492007 AATTTACACACATGAGCTGAGAAG 57.508 37.500 0.00 0.00 0.00 2.85
3112 5869 9.836864 ATATAATTTACACACATGAGCTGAGAA 57.163 29.630 0.00 0.00 0.00 2.87
3113 5870 9.481340 GATATAATTTACACACATGAGCTGAGA 57.519 33.333 0.00 0.00 0.00 3.27
3114 5871 9.486497 AGATATAATTTACACACATGAGCTGAG 57.514 33.333 0.00 0.00 0.00 3.35
3122 5879 9.830975 TGCACACTAGATATAATTTACACACAT 57.169 29.630 0.00 0.00 0.00 3.21
3123 5880 9.830975 ATGCACACTAGATATAATTTACACACA 57.169 29.630 0.00 0.00 0.00 3.72
3125 5882 8.773645 GCATGCACACTAGATATAATTTACACA 58.226 33.333 14.21 0.00 0.00 3.72
3126 5883 8.773645 TGCATGCACACTAGATATAATTTACAC 58.226 33.333 18.46 0.00 0.00 2.90
3127 5884 8.900983 TGCATGCACACTAGATATAATTTACA 57.099 30.769 18.46 0.00 0.00 2.41
3128 5885 8.993121 ACTGCATGCACACTAGATATAATTTAC 58.007 33.333 18.46 0.00 0.00 2.01
3129 5886 9.208022 GACTGCATGCACACTAGATATAATTTA 57.792 33.333 18.46 0.00 0.00 1.40
3130 5887 7.716560 TGACTGCATGCACACTAGATATAATTT 59.283 33.333 18.46 0.00 0.00 1.82
3131 5888 7.172190 GTGACTGCATGCACACTAGATATAATT 59.828 37.037 26.00 0.00 35.19 1.40
3132 5889 6.648310 GTGACTGCATGCACACTAGATATAAT 59.352 38.462 26.00 0.00 35.19 1.28
3133 5890 5.985530 GTGACTGCATGCACACTAGATATAA 59.014 40.000 26.00 0.44 35.19 0.98
3134 5891 5.302823 AGTGACTGCATGCACACTAGATATA 59.697 40.000 31.53 4.23 40.96 0.86
3135 5892 4.100653 AGTGACTGCATGCACACTAGATAT 59.899 41.667 31.53 14.64 40.96 1.63
3136 5893 3.448660 AGTGACTGCATGCACACTAGATA 59.551 43.478 31.53 10.24 40.96 1.98
3137 5894 2.235650 AGTGACTGCATGCACACTAGAT 59.764 45.455 31.53 15.52 40.96 1.98
3138 5895 1.620323 AGTGACTGCATGCACACTAGA 59.380 47.619 31.53 6.79 40.96 2.43
3139 5896 2.090400 AGTGACTGCATGCACACTAG 57.910 50.000 31.53 19.20 40.96 2.57
3140 5897 2.825532 TCTAGTGACTGCATGCACACTA 59.174 45.455 32.47 32.47 42.39 2.74
3141 5898 1.620323 TCTAGTGACTGCATGCACACT 59.380 47.619 33.40 33.40 44.17 3.55
3142 5899 2.084610 TCTAGTGACTGCATGCACAC 57.915 50.000 25.98 25.98 37.48 3.82
3143 5900 2.837532 TTCTAGTGACTGCATGCACA 57.162 45.000 18.46 11.97 37.48 4.57
3144 5901 3.247173 GCTATTCTAGTGACTGCATGCAC 59.753 47.826 18.46 9.02 35.30 4.57
3145 5902 3.461061 GCTATTCTAGTGACTGCATGCA 58.539 45.455 21.29 21.29 0.00 3.96
3146 5903 2.805099 GGCTATTCTAGTGACTGCATGC 59.195 50.000 11.82 11.82 0.00 4.06
3147 5904 4.056740 CAGGCTATTCTAGTGACTGCATG 58.943 47.826 0.00 0.00 0.00 4.06
3148 5905 3.494048 GCAGGCTATTCTAGTGACTGCAT 60.494 47.826 21.36 5.30 43.21 3.96
3149 5906 2.159043 GCAGGCTATTCTAGTGACTGCA 60.159 50.000 21.36 0.00 43.21 4.41
3150 5907 2.478831 GCAGGCTATTCTAGTGACTGC 58.521 52.381 15.48 15.48 40.23 4.40
3151 5908 2.359214 TCGCAGGCTATTCTAGTGACTG 59.641 50.000 0.00 0.00 0.00 3.51
3152 5909 2.656002 TCGCAGGCTATTCTAGTGACT 58.344 47.619 0.00 0.00 0.00 3.41
3153 5910 3.117046 GTTCGCAGGCTATTCTAGTGAC 58.883 50.000 0.00 0.00 0.00 3.67
3154 5911 3.024547 AGTTCGCAGGCTATTCTAGTGA 58.975 45.455 0.00 0.00 0.00 3.41
3155 5912 3.181486 TGAGTTCGCAGGCTATTCTAGTG 60.181 47.826 0.00 0.00 0.00 2.74
3156 5913 3.024547 TGAGTTCGCAGGCTATTCTAGT 58.975 45.455 0.00 0.00 0.00 2.57
3157 5914 3.717400 TGAGTTCGCAGGCTATTCTAG 57.283 47.619 0.00 0.00 0.00 2.43
3158 5915 4.141937 ACAATGAGTTCGCAGGCTATTCTA 60.142 41.667 0.00 0.00 0.00 2.10
3159 5916 3.201290 CAATGAGTTCGCAGGCTATTCT 58.799 45.455 0.00 0.00 0.00 2.40
3160 5917 2.939103 ACAATGAGTTCGCAGGCTATTC 59.061 45.455 0.00 0.00 0.00 1.75
3161 5918 2.991250 ACAATGAGTTCGCAGGCTATT 58.009 42.857 0.00 0.00 0.00 1.73
3162 5919 2.698855 ACAATGAGTTCGCAGGCTAT 57.301 45.000 0.00 0.00 0.00 2.97
3163 5920 3.819564 ATACAATGAGTTCGCAGGCTA 57.180 42.857 0.00 0.00 0.00 3.93
3164 5921 2.698855 ATACAATGAGTTCGCAGGCT 57.301 45.000 0.00 0.00 0.00 4.58
3165 5922 2.677836 TGAATACAATGAGTTCGCAGGC 59.322 45.455 0.00 0.00 0.00 4.85
3166 5923 4.024556 GGATGAATACAATGAGTTCGCAGG 60.025 45.833 0.00 0.00 0.00 4.85
3167 5924 4.571984 TGGATGAATACAATGAGTTCGCAG 59.428 41.667 0.00 0.00 0.00 5.18
3168 5925 4.332543 GTGGATGAATACAATGAGTTCGCA 59.667 41.667 0.00 0.00 0.00 5.10
3169 5926 4.332543 TGTGGATGAATACAATGAGTTCGC 59.667 41.667 0.00 0.00 0.00 4.70
3170 5927 6.421377 TTGTGGATGAATACAATGAGTTCG 57.579 37.500 0.00 0.00 32.30 3.95
3171 5928 7.253422 CCTTTGTGGATGAATACAATGAGTTC 58.747 38.462 0.00 0.00 36.75 3.01
3172 5929 6.153340 CCCTTTGTGGATGAATACAATGAGTT 59.847 38.462 0.00 0.00 36.75 3.01
3173 5930 5.653769 CCCTTTGTGGATGAATACAATGAGT 59.346 40.000 0.00 0.00 36.75 3.41
3174 5931 5.068198 CCCCTTTGTGGATGAATACAATGAG 59.932 44.000 0.00 0.00 36.75 2.90
3175 5932 4.955450 CCCCTTTGTGGATGAATACAATGA 59.045 41.667 0.00 0.00 36.75 2.57
3176 5933 4.711355 ACCCCTTTGTGGATGAATACAATG 59.289 41.667 0.00 0.00 36.75 2.82
3177 5934 4.946646 ACCCCTTTGTGGATGAATACAAT 58.053 39.130 0.00 0.00 36.75 2.71
3178 5935 4.396357 ACCCCTTTGTGGATGAATACAA 57.604 40.909 0.00 0.00 38.35 2.41
3179 5936 4.396357 AACCCCTTTGTGGATGAATACA 57.604 40.909 0.00 0.00 38.35 2.29
3180 5937 5.258051 TGTAACCCCTTTGTGGATGAATAC 58.742 41.667 0.00 0.00 38.35 1.89
3181 5938 5.522315 TGTAACCCCTTTGTGGATGAATA 57.478 39.130 0.00 0.00 38.35 1.75
3182 5939 4.396357 TGTAACCCCTTTGTGGATGAAT 57.604 40.909 0.00 0.00 38.35 2.57
3183 5940 3.885976 TGTAACCCCTTTGTGGATGAA 57.114 42.857 0.00 0.00 38.35 2.57
3184 5941 3.139397 ACTTGTAACCCCTTTGTGGATGA 59.861 43.478 0.00 0.00 38.35 2.92
3185 5942 3.496331 ACTTGTAACCCCTTTGTGGATG 58.504 45.455 0.00 0.00 38.35 3.51
3186 5943 3.895704 ACTTGTAACCCCTTTGTGGAT 57.104 42.857 0.00 0.00 38.35 3.41
3187 5944 6.645884 ATATACTTGTAACCCCTTTGTGGA 57.354 37.500 0.00 0.00 38.35 4.02
3188 5945 8.269317 TCTTATATACTTGTAACCCCTTTGTGG 58.731 37.037 0.00 0.00 0.00 4.17
3189 5946 9.675464 TTCTTATATACTTGTAACCCCTTTGTG 57.325 33.333 0.00 0.00 0.00 3.33
3190 5947 9.901172 CTTCTTATATACTTGTAACCCCTTTGT 57.099 33.333 0.00 0.00 0.00 2.83
3193 5950 9.503369 ACTCTTCTTATATACTTGTAACCCCTT 57.497 33.333 0.00 0.00 0.00 3.95
3208 5965 9.429109 TCTCTCTCTCTCTGTACTCTTCTTATA 57.571 37.037 0.00 0.00 0.00 0.98
3209 5966 8.319057 TCTCTCTCTCTCTGTACTCTTCTTAT 57.681 38.462 0.00 0.00 0.00 1.73
3210 5967 7.618117 TCTCTCTCTCTCTCTGTACTCTTCTTA 59.382 40.741 0.00 0.00 0.00 2.10
3211 5968 6.440647 TCTCTCTCTCTCTCTGTACTCTTCTT 59.559 42.308 0.00 0.00 0.00 2.52
3212 5969 5.958380 TCTCTCTCTCTCTCTGTACTCTTCT 59.042 44.000 0.00 0.00 0.00 2.85
3213 5970 6.127310 ACTCTCTCTCTCTCTCTGTACTCTTC 60.127 46.154 0.00 0.00 0.00 2.87
3214 5971 5.721960 ACTCTCTCTCTCTCTCTGTACTCTT 59.278 44.000 0.00 0.00 0.00 2.85
3215 5972 5.273208 ACTCTCTCTCTCTCTCTGTACTCT 58.727 45.833 0.00 0.00 0.00 3.24
3216 5973 5.599999 ACTCTCTCTCTCTCTCTGTACTC 57.400 47.826 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.