Multiple sequence alignment - TraesCS2A01G107700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G107700 chr2A 100.000 3293 0 0 1 3293 59934958 59931666 0.000000e+00 6082.0
1 TraesCS2A01G107700 chr2A 97.023 2822 60 15 486 3293 59874451 59871640 0.000000e+00 4724.0
2 TraesCS2A01G107700 chr2A 84.397 1551 165 30 934 2424 59728627 59727094 0.000000e+00 1452.0
3 TraesCS2A01G107700 chr2A 86.126 764 94 10 4 762 59729709 59728953 0.000000e+00 813.0
4 TraesCS2A01G107700 chr2A 82.117 548 69 10 23 558 59730649 59730119 3.020000e-120 442.0
5 TraesCS2A01G107700 chr2A 84.715 386 57 2 1817 2201 60078557 60078173 5.150000e-103 385.0
6 TraesCS2A01G107700 chr2A 84.555 382 39 15 2874 3242 14176183 14175809 8.690000e-96 361.0
7 TraesCS2A01G107700 chr2A 81.039 385 54 12 925 1299 59943583 59943208 4.160000e-74 289.0
8 TraesCS2A01G107700 chr2A 80.519 385 58 9 925 1299 59880913 59880536 2.500000e-71 279.0
9 TraesCS2A01G107700 chr2A 91.667 60 5 0 368 427 60607698 60607639 2.110000e-12 84.2
10 TraesCS2A01G107700 chr2D 86.647 2434 181 60 501 2849 60016794 60014420 0.000000e+00 2562.0
11 TraesCS2A01G107700 chr2D 83.563 1089 116 32 1377 2424 59731313 59730247 0.000000e+00 961.0
12 TraesCS2A01G107700 chr2D 83.684 570 85 7 1641 2204 59658444 59659011 6.260000e-147 531.0
13 TraesCS2A01G107700 chr2D 74.314 1129 225 46 1116 2193 60138919 60137805 5.080000e-113 418.0
14 TraesCS2A01G107700 chr2D 75.118 844 172 29 1381 2193 59727423 59728259 8.690000e-96 361.0
15 TraesCS2A01G107700 chr2D 86.916 107 9 2 608 711 59734292 59734188 7.470000e-22 115.0
16 TraesCS2A01G107700 chr2B 89.377 2024 145 38 496 2478 93689997 93688003 0.000000e+00 2483.0
17 TraesCS2A01G107700 chr2B 83.569 1838 178 69 693 2440 93639722 93637919 0.000000e+00 1607.0
18 TraesCS2A01G107700 chr2B 85.122 1398 142 30 1077 2424 93139383 93138002 0.000000e+00 1369.0
19 TraesCS2A01G107700 chr2B 88.837 1075 96 13 1622 2682 93446812 93445748 0.000000e+00 1299.0
20 TraesCS2A01G107700 chr2B 79.016 1077 156 44 1386 2423 93700771 93699726 0.000000e+00 673.0
21 TraesCS2A01G107700 chr2B 81.622 555 74 12 1034 1561 93447382 93446829 5.050000e-118 435.0
22 TraesCS2A01G107700 chr2B 82.990 388 42 15 2874 3248 45036377 45036001 2.450000e-86 329.0
23 TraesCS2A01G107700 chr2B 85.852 311 22 11 471 762 93140036 93139729 8.870000e-81 311.0
24 TraesCS2A01G107700 chr2B 88.889 153 17 0 323 475 93690442 93690290 4.340000e-44 189.0
25 TraesCS2A01G107700 chr2B 91.129 124 10 1 693 816 93453087 93452965 2.030000e-37 167.0
26 TraesCS2A01G107700 chr2B 84.971 173 16 5 2528 2692 93687991 93687821 2.030000e-37 167.0
27 TraesCS2A01G107700 chr2B 97.436 39 1 0 610 648 93453126 93453088 2.120000e-07 67.6
28 TraesCS2A01G107700 chr5D 85.156 384 37 12 2874 3241 519198842 519198463 3.100000e-100 375.0
29 TraesCS2A01G107700 chr3B 84.777 381 41 12 2874 3241 4422401 4422025 1.870000e-97 366.0
30 TraesCS2A01G107700 chr6D 84.555 382 40 13 2874 3241 455503538 455503914 8.690000e-96 361.0
31 TraesCS2A01G107700 chr1D 83.947 380 46 9 2874 3241 199074695 199074319 1.880000e-92 350.0
32 TraesCS2A01G107700 chr7D 83.990 381 42 14 2874 3241 118869182 118869556 6.760000e-92 348.0
33 TraesCS2A01G107700 chr7B 84.031 382 40 12 2875 3241 125188192 125187817 6.760000e-92 348.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G107700 chr2A 59931666 59934958 3292 True 6082.000000 6082 100.000000 1 3293 1 chr2A.!!$R4 3292
1 TraesCS2A01G107700 chr2A 59871640 59874451 2811 True 4724.000000 4724 97.023000 486 3293 1 chr2A.!!$R2 2807
2 TraesCS2A01G107700 chr2A 59727094 59730649 3555 True 902.333333 1452 84.213333 4 2424 3 chr2A.!!$R8 2420
3 TraesCS2A01G107700 chr2D 60014420 60016794 2374 True 2562.000000 2562 86.647000 501 2849 1 chr2D.!!$R1 2348
4 TraesCS2A01G107700 chr2D 59730247 59734292 4045 True 538.000000 961 85.239500 608 2424 2 chr2D.!!$R3 1816
5 TraesCS2A01G107700 chr2D 59658444 59659011 567 False 531.000000 531 83.684000 1641 2204 1 chr2D.!!$F1 563
6 TraesCS2A01G107700 chr2D 60137805 60138919 1114 True 418.000000 418 74.314000 1116 2193 1 chr2D.!!$R2 1077
7 TraesCS2A01G107700 chr2D 59727423 59728259 836 False 361.000000 361 75.118000 1381 2193 1 chr2D.!!$F2 812
8 TraesCS2A01G107700 chr2B 93637919 93639722 1803 True 1607.000000 1607 83.569000 693 2440 1 chr2B.!!$R2 1747
9 TraesCS2A01G107700 chr2B 93687821 93690442 2621 True 946.333333 2483 87.745667 323 2692 3 chr2B.!!$R7 2369
10 TraesCS2A01G107700 chr2B 93445748 93447382 1634 True 867.000000 1299 85.229500 1034 2682 2 chr2B.!!$R5 1648
11 TraesCS2A01G107700 chr2B 93138002 93140036 2034 True 840.000000 1369 85.487000 471 2424 2 chr2B.!!$R4 1953
12 TraesCS2A01G107700 chr2B 93699726 93700771 1045 True 673.000000 673 79.016000 1386 2423 1 chr2B.!!$R3 1037

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 1157 0.035739 GTACACCGCTTGGGAGGAAA 59.964 55.000 0.0 0.0 39.97 3.13 F
201 1159 1.228124 CACCGCTTGGGAGGAAACA 60.228 57.895 0.0 0.0 39.97 2.83 F
450 1412 1.376466 GGCCTCAGTTCTGCCTCAA 59.624 57.895 0.0 0.0 42.01 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2175 6239 0.545309 AGTTCACCCTGGAGCAGCTA 60.545 55.000 0.00 0.00 0.0 3.32 R
2281 6352 6.364701 TCAAGTGCTGGTATTTATATTGGCT 58.635 36.000 0.00 0.00 0.0 4.75 R
2358 6445 3.518590 AGTGGGAATTCGATCGTTACAC 58.481 45.455 15.94 14.29 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.804108 CGTAAATTTGGCAATGTTGAGGA 58.196 39.130 0.00 0.00 0.00 3.71
23 24 4.621034 CGTAAATTTGGCAATGTTGAGGAC 59.379 41.667 0.00 0.00 0.00 3.85
24 25 3.302365 AATTTGGCAATGTTGAGGACG 57.698 42.857 0.00 0.00 0.00 4.79
25 26 1.974265 TTTGGCAATGTTGAGGACGA 58.026 45.000 0.00 0.00 0.00 4.20
26 27 1.234821 TTGGCAATGTTGAGGACGAC 58.765 50.000 0.00 0.00 0.00 4.34
27 28 0.107643 TGGCAATGTTGAGGACGACA 59.892 50.000 0.00 0.00 43.46 4.35
28 29 1.234821 GGCAATGTTGAGGACGACAA 58.765 50.000 0.00 0.00 42.71 3.18
29 30 1.197721 GGCAATGTTGAGGACGACAAG 59.802 52.381 0.00 0.00 42.71 3.16
30 31 1.197721 GCAATGTTGAGGACGACAAGG 59.802 52.381 0.00 0.00 42.71 3.61
31 32 1.197721 CAATGTTGAGGACGACAAGGC 59.802 52.381 0.00 0.00 42.71 4.35
43 44 1.066858 CGACAAGGCCACTGTACTCAT 60.067 52.381 5.01 0.00 0.00 2.90
48 49 0.618458 GGCCACTGTACTCATTGGGA 59.382 55.000 0.00 0.00 42.35 4.37
49 50 1.212935 GGCCACTGTACTCATTGGGAT 59.787 52.381 0.00 0.00 42.35 3.85
63 64 6.939163 ACTCATTGGGATAGCATACAATCTTC 59.061 38.462 0.00 0.00 31.67 2.87
72 73 4.265073 AGCATACAATCTTCCAGTTGACC 58.735 43.478 0.00 0.00 0.00 4.02
75 76 5.880332 GCATACAATCTTCCAGTTGACCTTA 59.120 40.000 0.00 0.00 0.00 2.69
77 78 5.304686 ACAATCTTCCAGTTGACCTTACA 57.695 39.130 0.00 0.00 0.00 2.41
80 81 4.602340 TCTTCCAGTTGACCTTACACTC 57.398 45.455 0.00 0.00 0.00 3.51
81 82 3.005472 TCTTCCAGTTGACCTTACACTCG 59.995 47.826 0.00 0.00 0.00 4.18
84 85 1.045407 AGTTGACCTTACACTCGGCA 58.955 50.000 0.00 0.00 0.00 5.69
87 88 0.830444 TGACCTTACACTCGGCACCT 60.830 55.000 0.00 0.00 0.00 4.00
90 1048 0.389948 CCTTACACTCGGCACCTGTC 60.390 60.000 0.00 0.00 0.00 3.51
98 1056 2.022129 CGGCACCTGTCGTCTTGTC 61.022 63.158 0.00 0.00 38.51 3.18
99 1057 1.069090 GGCACCTGTCGTCTTGTCA 59.931 57.895 0.00 0.00 0.00 3.58
118 1076 3.823304 GTCAGAGCCAGACCAAAGAAAAT 59.177 43.478 0.00 0.00 0.00 1.82
143 1101 4.025813 CCGCTCAATTTTGTTGAGGTTTTG 60.026 41.667 16.78 0.00 44.46 2.44
147 1105 6.537453 TCAATTTTGTTGAGGTTTTGGAGA 57.463 33.333 0.00 0.00 0.00 3.71
154 1112 1.270305 TGAGGTTTTGGAGAGTGCTCG 60.270 52.381 0.00 0.00 42.25 5.03
156 1114 0.250338 GGTTTTGGAGAGTGCTCGGT 60.250 55.000 0.00 0.00 42.25 4.69
157 1115 1.594331 GTTTTGGAGAGTGCTCGGTT 58.406 50.000 0.00 0.00 42.25 4.44
171 1129 0.611062 TCGGTTGGACGATGAGAGGT 60.611 55.000 0.00 0.00 38.06 3.85
191 1149 1.337728 TGTGATGGAGTACACCGCTTG 60.338 52.381 4.80 0.00 36.35 4.01
199 1157 0.035739 GTACACCGCTTGGGAGGAAA 59.964 55.000 0.00 0.00 39.97 3.13
200 1158 0.035739 TACACCGCTTGGGAGGAAAC 59.964 55.000 0.00 0.00 39.97 2.78
201 1159 1.228124 CACCGCTTGGGAGGAAACA 60.228 57.895 0.00 0.00 39.97 2.83
211 1169 2.438763 TGGGAGGAAACAACCGACTTAA 59.561 45.455 0.00 0.00 34.73 1.85
219 1177 4.911514 AACAACCGACTTAACAAGCAAT 57.088 36.364 0.00 0.00 0.00 3.56
239 1197 6.374333 AGCAATGTTCGACCAATTGTAGTTAT 59.626 34.615 4.43 0.00 0.00 1.89
247 1205 8.697846 TCGACCAATTGTAGTTATAGTTTCTG 57.302 34.615 4.43 0.00 0.00 3.02
249 1207 7.011109 CGACCAATTGTAGTTATAGTTTCTGGG 59.989 40.741 4.43 0.00 0.00 4.45
286 1248 2.748058 AATGCCGCCTCAACTTCCGT 62.748 55.000 0.00 0.00 0.00 4.69
297 1259 3.542712 CAACTTCCGTTGTTCATCCTG 57.457 47.619 0.00 0.00 44.27 3.86
363 1325 3.056607 GCAAGGAAGCCTAAGAAAATGCA 60.057 43.478 0.00 0.00 30.53 3.96
366 1328 4.864726 AGGAAGCCTAAGAAAATGCATCT 58.135 39.130 0.00 0.00 28.47 2.90
450 1412 1.376466 GGCCTCAGTTCTGCCTCAA 59.624 57.895 0.00 0.00 42.01 3.02
1959 6017 2.737376 GCGAACCTGGACACGACC 60.737 66.667 0.00 0.00 0.00 4.79
2150 6214 2.813179 GCAACATCGCGCCGAAGAT 61.813 57.895 0.00 0.00 39.99 2.40
2175 6239 1.379576 GCAAGGGCAGATCAGGCTT 60.380 57.895 11.48 0.59 40.72 4.35
2281 6352 5.186256 TGAATAAGGCCACAGAACCAATA 57.814 39.130 5.01 0.00 0.00 1.90
2358 6445 4.513198 TCATGCATGCATCCACATATTG 57.487 40.909 30.07 17.10 33.90 1.90
2384 6472 4.730949 ACGATCGAATTCCCACTTTCTA 57.269 40.909 24.34 0.00 0.00 2.10
2483 6574 1.876497 ATTTGGCATGACGTGGGCAC 61.876 55.000 0.00 0.00 39.47 5.01
2558 6654 0.881118 TTTCGACATTTGGCAGGAGC 59.119 50.000 0.00 0.00 41.10 4.70
2627 6730 1.200948 GGAGAAAACTCCAGCATGTGC 59.799 52.381 10.86 0.00 42.86 4.57
2694 6818 1.668237 GGAAGAAAGAAGCGCCTCATC 59.332 52.381 9.03 6.27 0.00 2.92
2750 6874 2.224209 TGTCCCGTGTTCTTTCTTCTCC 60.224 50.000 0.00 0.00 0.00 3.71
2783 6910 7.188381 TCAATATTCTCCCATTTCCCTTTTCA 58.812 34.615 0.00 0.00 0.00 2.69
2888 7015 1.378762 GCCCTGCACCTGGTTAGAA 59.621 57.895 0.00 0.00 0.00 2.10
3038 7165 4.568152 AAGACAAATCGGGTCAAAACAG 57.432 40.909 0.00 0.00 37.74 3.16
3107 7235 9.286946 GAGCTTCTCAGATGTTCAAATAATTTG 57.713 33.333 0.09 0.00 41.96 2.32
3151 7279 5.781210 TGCATCAAATTGTTTACCACAGA 57.219 34.783 0.00 0.00 36.48 3.41
3228 7356 1.521010 CAGATGAGCTCGGGTGCAG 60.521 63.158 9.64 0.00 34.99 4.41
3241 7369 2.726821 GGGTGCAGAGATGGATTTTCA 58.273 47.619 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.621034 GTCCTCAACATTGCCAAATTTACG 59.379 41.667 0.00 0.00 0.00 3.18
1 2 4.621034 CGTCCTCAACATTGCCAAATTTAC 59.379 41.667 0.00 0.00 0.00 2.01
2 3 4.520874 TCGTCCTCAACATTGCCAAATTTA 59.479 37.500 0.00 0.00 0.00 1.40
3 4 3.320541 TCGTCCTCAACATTGCCAAATTT 59.679 39.130 0.00 0.00 0.00 1.82
4 5 2.890311 TCGTCCTCAACATTGCCAAATT 59.110 40.909 0.00 0.00 0.00 1.82
6 7 1.606668 GTCGTCCTCAACATTGCCAAA 59.393 47.619 0.00 0.00 0.00 3.28
7 8 1.234821 GTCGTCCTCAACATTGCCAA 58.765 50.000 0.00 0.00 0.00 4.52
8 9 0.107643 TGTCGTCCTCAACATTGCCA 59.892 50.000 0.00 0.00 0.00 4.92
9 10 1.197721 CTTGTCGTCCTCAACATTGCC 59.802 52.381 0.00 0.00 0.00 4.52
10 11 1.197721 CCTTGTCGTCCTCAACATTGC 59.802 52.381 0.00 0.00 0.00 3.56
11 12 1.197721 GCCTTGTCGTCCTCAACATTG 59.802 52.381 0.00 0.00 0.00 2.82
12 13 1.523758 GCCTTGTCGTCCTCAACATT 58.476 50.000 0.00 0.00 0.00 2.71
13 14 0.321653 GGCCTTGTCGTCCTCAACAT 60.322 55.000 0.00 0.00 0.00 2.71
14 15 1.070786 GGCCTTGTCGTCCTCAACA 59.929 57.895 0.00 0.00 0.00 3.33
15 16 1.070786 TGGCCTTGTCGTCCTCAAC 59.929 57.895 3.32 0.00 0.00 3.18
16 17 1.070786 GTGGCCTTGTCGTCCTCAA 59.929 57.895 3.32 0.00 0.00 3.02
17 18 1.837051 AGTGGCCTTGTCGTCCTCA 60.837 57.895 3.32 0.00 0.00 3.86
18 19 1.374758 CAGTGGCCTTGTCGTCCTC 60.375 63.158 3.32 0.00 0.00 3.71
19 20 0.830444 TACAGTGGCCTTGTCGTCCT 60.830 55.000 15.39 0.00 0.00 3.85
20 21 0.669625 GTACAGTGGCCTTGTCGTCC 60.670 60.000 15.39 1.82 0.00 4.79
21 22 0.317479 AGTACAGTGGCCTTGTCGTC 59.683 55.000 15.39 8.83 0.00 4.20
22 23 0.317479 GAGTACAGTGGCCTTGTCGT 59.683 55.000 15.39 5.88 0.00 4.34
23 24 0.317160 TGAGTACAGTGGCCTTGTCG 59.683 55.000 15.39 0.00 0.00 4.35
24 25 2.744202 CAATGAGTACAGTGGCCTTGTC 59.256 50.000 15.39 8.76 38.26 3.18
25 26 2.783135 CAATGAGTACAGTGGCCTTGT 58.217 47.619 16.06 16.06 38.26 3.16
35 36 6.493189 TTGTATGCTATCCCAATGAGTACA 57.507 37.500 0.00 0.00 0.00 2.90
43 44 5.132648 ACTGGAAGATTGTATGCTATCCCAA 59.867 40.000 1.91 0.00 37.43 4.12
48 49 6.058183 GGTCAACTGGAAGATTGTATGCTAT 58.942 40.000 0.00 0.00 37.43 2.97
49 50 5.189736 AGGTCAACTGGAAGATTGTATGCTA 59.810 40.000 0.00 0.00 37.43 3.49
63 64 1.939838 GCCGAGTGTAAGGTCAACTGG 60.940 57.143 0.00 0.00 0.00 4.00
72 73 0.732880 CGACAGGTGCCGAGTGTAAG 60.733 60.000 0.00 0.00 0.00 2.34
75 76 3.208884 GACGACAGGTGCCGAGTGT 62.209 63.158 0.00 0.00 0.00 3.55
77 78 2.201022 AAGACGACAGGTGCCGAGT 61.201 57.895 0.00 0.00 0.00 4.18
80 81 2.022129 GACAAGACGACAGGTGCCG 61.022 63.158 0.00 0.00 0.00 5.69
81 82 0.946221 CTGACAAGACGACAGGTGCC 60.946 60.000 0.00 0.00 34.25 5.01
84 85 0.315568 GCTCTGACAAGACGACAGGT 59.684 55.000 0.00 0.00 37.89 4.00
87 88 0.315251 CTGGCTCTGACAAGACGACA 59.685 55.000 0.00 0.00 0.00 4.35
90 1048 0.389166 GGTCTGGCTCTGACAAGACG 60.389 60.000 12.04 0.00 34.69 4.18
98 1056 3.192212 GGATTTTCTTTGGTCTGGCTCTG 59.808 47.826 0.00 0.00 0.00 3.35
99 1057 3.425659 GGATTTTCTTTGGTCTGGCTCT 58.574 45.455 0.00 0.00 0.00 4.09
118 1076 1.885887 CCTCAACAAAATTGAGCGGGA 59.114 47.619 10.53 0.00 43.33 5.14
143 1101 1.079750 GTCCAACCGAGCACTCTCC 60.080 63.158 0.00 0.00 35.94 3.71
147 1105 1.079819 CATCGTCCAACCGAGCACT 60.080 57.895 0.00 0.00 40.68 4.40
154 1112 0.608640 ACACCTCTCATCGTCCAACC 59.391 55.000 0.00 0.00 0.00 3.77
156 1114 1.627864 TCACACCTCTCATCGTCCAA 58.372 50.000 0.00 0.00 0.00 3.53
157 1115 1.478105 CATCACACCTCTCATCGTCCA 59.522 52.381 0.00 0.00 0.00 4.02
171 1129 0.973632 AAGCGGTGTACTCCATCACA 59.026 50.000 14.09 0.00 36.43 3.58
186 1144 1.956802 GGTTGTTTCCTCCCAAGCG 59.043 57.895 0.00 0.00 30.50 4.68
191 1149 2.810274 GTTAAGTCGGTTGTTTCCTCCC 59.190 50.000 0.00 0.00 0.00 4.30
199 1157 3.630312 ACATTGCTTGTTAAGTCGGTTGT 59.370 39.130 0.00 0.00 33.74 3.32
200 1158 4.223320 ACATTGCTTGTTAAGTCGGTTG 57.777 40.909 0.00 0.00 33.74 3.77
201 1159 4.911514 AACATTGCTTGTTAAGTCGGTT 57.088 36.364 4.11 0.00 46.75 4.44
211 1169 3.068024 ACAATTGGTCGAACATTGCTTGT 59.932 39.130 19.14 15.93 41.53 3.16
219 1177 8.836268 AAACTATAACTACAATTGGTCGAACA 57.164 30.769 10.83 0.00 0.00 3.18
266 1226 0.742990 CGGAAGTTGAGGCGGCATTA 60.743 55.000 13.08 0.00 0.00 1.90
267 1227 2.040544 CGGAAGTTGAGGCGGCATT 61.041 57.895 13.08 0.00 0.00 3.56
286 1248 0.040058 AGCATGGGCAGGATGAACAA 59.960 50.000 0.00 0.00 44.61 2.83
290 1252 0.106868 CTGAAGCATGGGCAGGATGA 60.107 55.000 0.00 0.00 44.61 2.92
295 1257 1.471684 GAGTTTCTGAAGCATGGGCAG 59.528 52.381 7.01 0.00 44.61 4.85
296 1258 1.202915 TGAGTTTCTGAAGCATGGGCA 60.203 47.619 7.01 0.00 44.61 5.36
297 1259 1.538047 TGAGTTTCTGAAGCATGGGC 58.462 50.000 7.01 0.00 41.61 5.36
450 1412 1.527380 AAACGCACGGTGGGAATGT 60.527 52.632 28.85 6.22 34.12 2.71
482 1444 5.122519 CAGCTGAGACAGTACTGAGAGATA 58.877 45.833 29.30 9.06 33.43 1.98
484 1721 3.342719 CAGCTGAGACAGTACTGAGAGA 58.657 50.000 29.30 9.20 33.43 3.10
1459 5416 2.092291 GCTGTCGATGACGCCGAAA 61.092 57.895 0.00 0.00 37.81 3.46
1972 6030 1.403780 GGTGTAGTAGGCGTTGTGGAG 60.404 57.143 0.00 0.00 0.00 3.86
1975 6033 1.796459 GTTGGTGTAGTAGGCGTTGTG 59.204 52.381 0.00 0.00 0.00 3.33
2175 6239 0.545309 AGTTCACCCTGGAGCAGCTA 60.545 55.000 0.00 0.00 0.00 3.32
2281 6352 6.364701 TCAAGTGCTGGTATTTATATTGGCT 58.635 36.000 0.00 0.00 0.00 4.75
2358 6445 3.518590 AGTGGGAATTCGATCGTTACAC 58.481 45.455 15.94 14.29 0.00 2.90
2483 6574 6.632035 GTGTTACGATTGATAGTAGTTCTCCG 59.368 42.308 0.00 0.00 0.00 4.63
2558 6654 4.386049 CCTAAAATAATCGAGCACGGCTAG 59.614 45.833 3.11 0.00 39.88 3.42
2750 6874 4.137116 TGGGAGAATATTGAGAACCACG 57.863 45.455 0.00 0.00 0.00 4.94
2813 6940 9.168451 AGGTTTTCACGTAATTTTGGAATTTTT 57.832 25.926 0.00 0.00 36.82 1.94
2814 6941 8.608317 CAGGTTTTCACGTAATTTTGGAATTTT 58.392 29.630 0.00 0.00 36.82 1.82
2815 6942 7.766738 ACAGGTTTTCACGTAATTTTGGAATTT 59.233 29.630 0.00 0.00 36.82 1.82
2816 6943 7.269316 ACAGGTTTTCACGTAATTTTGGAATT 58.731 30.769 0.00 0.00 38.88 2.17
2817 6944 6.811954 ACAGGTTTTCACGTAATTTTGGAAT 58.188 32.000 0.00 0.00 0.00 3.01
2831 6958 4.704540 TCAAGCTTTGAAGACAGGTTTTCA 59.295 37.500 0.00 1.67 36.59 2.69
2938 7065 4.233789 GCATCAAATTTTCTACCGCACAA 58.766 39.130 0.00 0.00 0.00 3.33
3026 7153 3.562141 TGTTCATGTACTGTTTTGACCCG 59.438 43.478 4.01 0.00 0.00 5.28
3107 7235 5.560953 GCATGAGGTATACGCTCCAATTTTC 60.561 44.000 14.87 0.00 0.00 2.29
3120 7248 8.629158 GGTAAACAATTTGATGCATGAGGTATA 58.371 33.333 2.46 0.00 0.00 1.47
3121 7249 7.123997 TGGTAAACAATTTGATGCATGAGGTAT 59.876 33.333 2.46 0.00 0.00 2.73
3205 7333 2.202987 CCGAGCTCATCTGCACCC 60.203 66.667 15.40 0.00 34.99 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.