Multiple sequence alignment - TraesCS2A01G107100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G107100 chr2A 100.000 5734 0 0 1 5734 59559093 59553360 0.000000e+00 10589.0
1 TraesCS2A01G107100 chr2A 87.589 282 21 6 400 681 59570031 59569764 1.200000e-81 315.0
2 TraesCS2A01G107100 chr2A 97.727 176 1 1 1429 1604 59568243 59568071 3.360000e-77 300.0
3 TraesCS2A01G107100 chr2A 95.152 165 7 1 128 291 705822003 705821839 5.700000e-65 259.0
4 TraesCS2A01G107100 chr2A 91.549 71 6 0 741 811 59569139 59569069 1.310000e-16 99.0
5 TraesCS2A01G107100 chr2B 92.986 3151 169 28 2410 5527 91258932 91262063 0.000000e+00 4547.0
6 TraesCS2A01G107100 chr2B 83.828 1954 159 74 523 2383 91256843 91258732 0.000000e+00 1712.0
7 TraesCS2A01G107100 chr2B 92.593 594 23 9 2414 3000 91277152 91277731 0.000000e+00 833.0
8 TraesCS2A01G107100 chr2B 93.714 175 10 1 121 294 556659205 556659031 1.580000e-65 261.0
9 TraesCS2A01G107100 chr2B 93.220 177 9 2 5558 5734 91262067 91262240 2.050000e-64 257.0
10 TraesCS2A01G107100 chr2B 93.143 175 9 3 124 297 755513135 755512963 2.650000e-63 254.0
11 TraesCS2A01G107100 chr2B 93.023 172 11 1 127 297 52628566 52628395 3.430000e-62 250.0
12 TraesCS2A01G107100 chr2B 89.637 193 16 4 106 294 425356281 425356473 5.740000e-60 243.0
13 TraesCS2A01G107100 chr2D 95.091 1589 70 5 3306 4894 58779905 58781485 0.000000e+00 2495.0
14 TraesCS2A01G107100 chr2D 90.210 1001 59 18 972 1955 58777515 58778493 0.000000e+00 1269.0
15 TraesCS2A01G107100 chr2D 91.146 881 50 17 2410 3277 58779040 58779905 0.000000e+00 1170.0
16 TraesCS2A01G107100 chr2D 91.284 849 59 7 4894 5734 58781621 58782462 0.000000e+00 1144.0
17 TraesCS2A01G107100 chr2D 89.245 530 27 10 297 811 58776895 58777409 2.250000e-178 636.0
18 TraesCS2A01G107100 chr2D 84.862 218 33 0 5120 5337 143924821 143925038 2.690000e-53 220.0
19 TraesCS2A01G107100 chr2D 92.453 106 7 1 20 125 58776777 58776881 3.580000e-32 150.0
20 TraesCS2A01G107100 chr4D 84.058 621 97 2 3640 4259 297359716 297359097 1.060000e-166 597.0
21 TraesCS2A01G107100 chr4D 82.796 93 14 2 3132 3222 21872547 21872455 1.320000e-11 82.4
22 TraesCS2A01G107100 chr4A 83.651 630 101 2 3631 4259 190834012 190834640 4.950000e-165 592.0
23 TraesCS2A01G107100 chr4A 88.797 241 27 0 1110 1350 190823749 190823989 4.340000e-76 296.0
24 TraesCS2A01G107100 chr4B 83.736 621 99 2 3640 4259 368412763 368412144 2.300000e-163 586.0
25 TraesCS2A01G107100 chr4B 87.179 78 8 2 2183 2259 580854798 580854874 2.850000e-13 87.9
26 TraesCS2A01G107100 chr3B 86.217 341 26 8 5393 5730 186092708 186092386 3.290000e-92 350.0
27 TraesCS2A01G107100 chr3B 85.588 340 30 7 5393 5730 184960881 184960559 7.120000e-89 339.0
28 TraesCS2A01G107100 chr6B 87.018 285 30 5 5453 5734 623192813 623193093 1.200000e-81 315.0
29 TraesCS2A01G107100 chr6B 87.451 255 29 1 1137 1388 570982485 570982231 2.020000e-74 291.0
30 TraesCS2A01G107100 chr6B 95.152 165 7 1 127 290 126151938 126152102 5.700000e-65 259.0
31 TraesCS2A01G107100 chr7D 86.940 268 33 2 1124 1390 504174807 504175073 3.360000e-77 300.0
32 TraesCS2A01G107100 chr7D 84.082 245 34 3 1137 1377 169915307 169915064 1.240000e-56 231.0
33 TraesCS2A01G107100 chr7D 92.453 53 4 0 1548 1600 504175282 504175334 6.160000e-10 76.8
34 TraesCS2A01G107100 chr7D 94.872 39 1 1 1550 1587 575508208 575508170 6.200000e-05 60.2
35 TraesCS2A01G107100 chr7B 86.567 268 34 2 1124 1390 532275747 532276013 1.560000e-75 294.0
36 TraesCS2A01G107100 chr7B 94.083 169 9 1 127 294 261822956 261823124 7.370000e-64 255.0
37 TraesCS2A01G107100 chr7B 91.209 182 14 2 123 303 215365681 215365501 4.440000e-61 246.0
38 TraesCS2A01G107100 chr7B 92.453 53 4 0 1548 1600 532276222 532276274 6.160000e-10 76.8
39 TraesCS2A01G107100 chr7A 86.567 268 34 2 1124 1390 571701702 571701968 1.560000e-75 294.0
40 TraesCS2A01G107100 chr7A 83.936 249 35 3 1137 1381 172469141 172468894 3.450000e-57 233.0
41 TraesCS2A01G107100 chr7A 92.453 53 4 0 1548 1600 571702177 571702229 6.160000e-10 76.8
42 TraesCS2A01G107100 chr6D 87.451 255 29 1 1137 1388 381999837 381999583 2.020000e-74 291.0
43 TraesCS2A01G107100 chr6A 87.451 255 29 1 1137 1388 523949631 523949377 2.020000e-74 291.0
44 TraesCS2A01G107100 chr1A 83.810 315 37 10 1137 1444 511014230 511013923 2.610000e-73 287.0
45 TraesCS2A01G107100 chr1D 83.492 315 38 9 1137 1444 414286542 414286235 1.220000e-71 281.0
46 TraesCS2A01G107100 chr1B 82.222 315 42 10 1137 1444 559097205 559096898 5.700000e-65 259.0
47 TraesCS2A01G107100 chr3A 92.614 176 11 2 124 298 222450868 222451042 9.540000e-63 252.0
48 TraesCS2A01G107100 chr3A 87.500 48 5 1 3133 3179 171208478 171208431 3.000000e-03 54.7
49 TraesCS2A01G107100 chr3D 80.159 126 22 3 5144 5269 301587868 301587990 2.200000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G107100 chr2A 59553360 59559093 5733 True 10589 10589 100.000000 1 5734 1 chr2A.!!$R1 5733
1 TraesCS2A01G107100 chr2A 59568071 59570031 1960 True 238 315 92.288333 400 1604 3 chr2A.!!$R3 1204
2 TraesCS2A01G107100 chr2B 91256843 91262240 5397 False 2172 4547 90.011333 523 5734 3 chr2B.!!$F3 5211
3 TraesCS2A01G107100 chr2B 91277152 91277731 579 False 833 833 92.593000 2414 3000 1 chr2B.!!$F1 586
4 TraesCS2A01G107100 chr2D 58776777 58782462 5685 False 1144 2495 91.571500 20 5734 6 chr2D.!!$F2 5714
5 TraesCS2A01G107100 chr4D 297359097 297359716 619 True 597 597 84.058000 3640 4259 1 chr4D.!!$R2 619
6 TraesCS2A01G107100 chr4A 190834012 190834640 628 False 592 592 83.651000 3631 4259 1 chr4A.!!$F2 628
7 TraesCS2A01G107100 chr4B 368412144 368412763 619 True 586 586 83.736000 3640 4259 1 chr4B.!!$R1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 1394 0.172803 GCTCCCGCTTCTTTCGAGTA 59.827 55.0 0.00 0.00 0.00 2.59 F
1107 1714 0.173255 GGTGCCAATCAATCGGTTGG 59.827 55.0 8.88 0.00 46.03 3.77 F
1679 2625 0.980423 GGCTCTTCAGTTCAGGGAGT 59.020 55.0 0.00 0.00 0.00 3.85 F
2475 3718 0.179100 CAGATGCCGTCACTCCGATT 60.179 55.0 0.00 0.00 0.00 3.34 F
2580 3823 0.180642 CCTGGCTGATCTGCATGAGT 59.819 55.0 23.84 0.00 34.04 3.41 F
4425 5676 0.037326 GACGAACACCATGGAGCTCA 60.037 55.0 21.47 1.87 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 2674 0.250467 AACAGCCGAGAACACTGCAT 60.250 50.000 0.00 0.0 34.72 3.96 R
2404 3498 0.320247 AGGCAGAACAAGCGACAGAG 60.320 55.000 0.00 0.0 0.00 3.35 R
3209 4459 1.017701 CAGTAGGTCGGTTTTCGCCC 61.018 60.000 0.00 0.0 37.12 6.13 R
3743 4994 0.538516 AGTAGAGCGCCTCGATGGAT 60.539 55.000 2.29 0.0 38.35 3.41 R
4533 5790 4.069232 CTCCCTCGCCTCGCACAA 62.069 66.667 0.00 0.0 0.00 3.33 R
5373 6777 2.432444 TGCATCGAAAACTTACCCCTG 58.568 47.619 0.00 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 1.338389 CCCCGAAAGCTAAAGGTCGAA 60.338 52.381 0.00 0.00 35.54 3.71
125 126 3.307242 CCGAAAGCTAAAGGTCGAAGATG 59.693 47.826 0.00 0.00 40.67 2.90
126 127 4.174009 CGAAAGCTAAAGGTCGAAGATGA 58.826 43.478 0.00 0.00 40.67 2.92
127 128 4.806247 CGAAAGCTAAAGGTCGAAGATGAT 59.194 41.667 0.00 0.00 40.67 2.45
129 130 6.074782 CGAAAGCTAAAGGTCGAAGATGATAC 60.075 42.308 0.00 0.00 40.67 2.24
130 131 6.472686 AAGCTAAAGGTCGAAGATGATACT 57.527 37.500 0.00 0.00 40.67 2.12
131 132 6.079424 AGCTAAAGGTCGAAGATGATACTC 57.921 41.667 0.00 0.00 40.67 2.59
132 133 5.010213 AGCTAAAGGTCGAAGATGATACTCC 59.990 44.000 0.00 0.00 40.67 3.85
134 135 5.941555 AAAGGTCGAAGATGATACTCCTT 57.058 39.130 0.00 0.00 40.67 3.36
135 136 5.523438 AAGGTCGAAGATGATACTCCTTC 57.477 43.478 0.00 0.00 40.67 3.46
136 137 3.892588 AGGTCGAAGATGATACTCCTTCC 59.107 47.826 0.00 0.00 40.67 3.46
138 139 3.315749 GTCGAAGATGATACTCCTTCCGT 59.684 47.826 0.00 0.00 40.67 4.69
139 140 3.952323 TCGAAGATGATACTCCTTCCGTT 59.048 43.478 0.00 0.00 34.40 4.44
140 141 4.036498 TCGAAGATGATACTCCTTCCGTTC 59.964 45.833 0.00 0.00 34.40 3.95
141 142 4.623002 GAAGATGATACTCCTTCCGTTCC 58.377 47.826 0.00 0.00 32.39 3.62
142 143 3.917300 AGATGATACTCCTTCCGTTCCT 58.083 45.455 0.00 0.00 0.00 3.36
143 144 5.063017 AGATGATACTCCTTCCGTTCCTA 57.937 43.478 0.00 0.00 0.00 2.94
144 145 5.455872 AGATGATACTCCTTCCGTTCCTAA 58.544 41.667 0.00 0.00 0.00 2.69
145 146 5.897824 AGATGATACTCCTTCCGTTCCTAAA 59.102 40.000 0.00 0.00 0.00 1.85
146 147 6.555360 AGATGATACTCCTTCCGTTCCTAAAT 59.445 38.462 0.00 0.00 0.00 1.40
147 148 7.728981 AGATGATACTCCTTCCGTTCCTAAATA 59.271 37.037 0.00 0.00 0.00 1.40
148 149 7.047460 TGATACTCCTTCCGTTCCTAAATAC 57.953 40.000 0.00 0.00 0.00 1.89
149 150 6.837568 TGATACTCCTTCCGTTCCTAAATACT 59.162 38.462 0.00 0.00 0.00 2.12
150 151 7.343833 TGATACTCCTTCCGTTCCTAAATACTT 59.656 37.037 0.00 0.00 0.00 2.24
151 152 5.731591 ACTCCTTCCGTTCCTAAATACTTG 58.268 41.667 0.00 0.00 0.00 3.16
152 153 5.247792 ACTCCTTCCGTTCCTAAATACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
153 154 5.727434 TCCTTCCGTTCCTAAATACTTGTC 58.273 41.667 0.00 0.00 0.00 3.18
154 155 5.482878 TCCTTCCGTTCCTAAATACTTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
155 156 6.013984 TCCTTCCGTTCCTAAATACTTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
156 157 6.653740 CCTTCCGTTCCTAAATACTTGTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
157 158 7.148457 CCTTCCGTTCCTAAATACTTGTCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
158 159 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
159 160 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
160 161 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
161 162 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
162 163 9.291664 CGTTCCTAAATACTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
187 188 9.257651 AGATTTTAATAAGTGACTACATACGGC 57.742 33.333 0.00 0.00 0.00 5.68
188 189 7.453980 TTTTAATAAGTGACTACATACGGCG 57.546 36.000 4.80 4.80 0.00 6.46
189 190 2.480224 TAAGTGACTACATACGGCGC 57.520 50.000 6.90 0.00 0.00 6.53
190 191 0.528924 AAGTGACTACATACGGCGCA 59.471 50.000 10.83 0.00 0.00 6.09
191 192 0.528924 AGTGACTACATACGGCGCAA 59.471 50.000 10.83 0.00 0.00 4.85
192 193 1.067425 AGTGACTACATACGGCGCAAA 60.067 47.619 10.83 0.00 0.00 3.68
193 194 1.727880 GTGACTACATACGGCGCAAAA 59.272 47.619 10.83 0.00 0.00 2.44
194 195 2.350498 GTGACTACATACGGCGCAAAAT 59.650 45.455 10.83 0.00 0.00 1.82
195 196 2.350192 TGACTACATACGGCGCAAAATG 59.650 45.455 10.83 11.57 0.00 2.32
196 197 2.605818 GACTACATACGGCGCAAAATGA 59.394 45.455 10.83 0.00 0.00 2.57
197 198 3.004171 ACTACATACGGCGCAAAATGAA 58.996 40.909 10.83 0.00 0.00 2.57
198 199 3.625764 ACTACATACGGCGCAAAATGAAT 59.374 39.130 10.83 0.00 0.00 2.57
199 200 2.796304 ACATACGGCGCAAAATGAATG 58.204 42.857 10.83 5.20 0.00 2.67
200 201 2.421775 ACATACGGCGCAAAATGAATGA 59.578 40.909 10.83 0.00 0.00 2.57
201 202 3.119673 ACATACGGCGCAAAATGAATGAA 60.120 39.130 10.83 0.00 0.00 2.57
202 203 2.652941 ACGGCGCAAAATGAATGAAT 57.347 40.000 10.83 0.00 0.00 2.57
203 204 2.529151 ACGGCGCAAAATGAATGAATC 58.471 42.857 10.83 0.00 0.00 2.52
204 205 2.164219 ACGGCGCAAAATGAATGAATCT 59.836 40.909 10.83 0.00 0.00 2.40
205 206 3.376859 ACGGCGCAAAATGAATGAATCTA 59.623 39.130 10.83 0.00 0.00 1.98
206 207 3.725740 CGGCGCAAAATGAATGAATCTAC 59.274 43.478 10.83 0.00 0.00 2.59
207 208 4.671377 GGCGCAAAATGAATGAATCTACA 58.329 39.130 10.83 0.00 0.00 2.74
208 209 4.500477 GGCGCAAAATGAATGAATCTACAC 59.500 41.667 10.83 0.00 0.00 2.90
209 210 5.335127 GCGCAAAATGAATGAATCTACACT 58.665 37.500 0.30 0.00 0.00 3.55
210 211 5.801947 GCGCAAAATGAATGAATCTACACTT 59.198 36.000 0.30 0.00 0.00 3.16
211 212 6.308766 GCGCAAAATGAATGAATCTACACTTT 59.691 34.615 0.30 0.00 0.00 2.66
212 213 7.484641 GCGCAAAATGAATGAATCTACACTTTA 59.515 33.333 0.30 0.00 0.00 1.85
213 214 9.340695 CGCAAAATGAATGAATCTACACTTTAA 57.659 29.630 0.00 0.00 0.00 1.52
246 247 4.944048 CATACATCCGTATGTTGAGTCCA 58.056 43.478 0.00 0.00 46.70 4.02
247 248 5.541845 CATACATCCGTATGTTGAGTCCAT 58.458 41.667 0.00 0.00 46.70 3.41
248 249 4.487714 ACATCCGTATGTTGAGTCCATT 57.512 40.909 0.00 0.00 44.07 3.16
249 250 4.843728 ACATCCGTATGTTGAGTCCATTT 58.156 39.130 0.00 0.00 44.07 2.32
250 251 5.984725 ACATCCGTATGTTGAGTCCATTTA 58.015 37.500 0.00 0.00 44.07 1.40
251 252 6.411376 ACATCCGTATGTTGAGTCCATTTAA 58.589 36.000 0.00 0.00 44.07 1.52
252 253 6.882140 ACATCCGTATGTTGAGTCCATTTAAA 59.118 34.615 0.00 0.00 44.07 1.52
253 254 7.392113 ACATCCGTATGTTGAGTCCATTTAAAA 59.608 33.333 0.00 0.00 44.07 1.52
254 255 7.931578 TCCGTATGTTGAGTCCATTTAAAAT 57.068 32.000 0.00 0.00 0.00 1.82
255 256 7.757526 TCCGTATGTTGAGTCCATTTAAAATG 58.242 34.615 0.00 0.00 0.00 2.32
256 257 6.472163 CCGTATGTTGAGTCCATTTAAAATGC 59.528 38.462 0.00 0.00 0.00 3.56
257 258 6.472163 CGTATGTTGAGTCCATTTAAAATGCC 59.528 38.462 0.00 0.00 0.00 4.40
258 259 6.610075 ATGTTGAGTCCATTTAAAATGCCT 57.390 33.333 0.00 0.00 0.00 4.75
259 260 7.716799 ATGTTGAGTCCATTTAAAATGCCTA 57.283 32.000 0.00 0.00 0.00 3.93
260 261 7.156876 TGTTGAGTCCATTTAAAATGCCTAG 57.843 36.000 0.00 0.00 0.00 3.02
261 262 6.945435 TGTTGAGTCCATTTAAAATGCCTAGA 59.055 34.615 0.00 0.00 0.00 2.43
262 263 7.450014 TGTTGAGTCCATTTAAAATGCCTAGAA 59.550 33.333 0.00 0.00 0.00 2.10
263 264 8.303876 GTTGAGTCCATTTAAAATGCCTAGAAA 58.696 33.333 0.00 0.00 0.00 2.52
264 265 8.055279 TGAGTCCATTTAAAATGCCTAGAAAG 57.945 34.615 0.00 0.00 0.00 2.62
265 266 7.888021 TGAGTCCATTTAAAATGCCTAGAAAGA 59.112 33.333 0.00 0.00 0.00 2.52
266 267 8.650143 AGTCCATTTAAAATGCCTAGAAAGAA 57.350 30.769 0.00 0.00 0.00 2.52
267 268 9.088987 AGTCCATTTAAAATGCCTAGAAAGAAA 57.911 29.630 0.00 0.00 0.00 2.52
268 269 9.358872 GTCCATTTAAAATGCCTAGAAAGAAAG 57.641 33.333 0.00 0.00 0.00 2.62
269 270 9.088987 TCCATTTAAAATGCCTAGAAAGAAAGT 57.911 29.630 0.00 0.00 0.00 2.66
276 277 8.650143 AAATGCCTAGAAAGAAAGTATTTGGA 57.350 30.769 0.00 0.00 39.27 3.53
277 278 8.650143 AATGCCTAGAAAGAAAGTATTTGGAA 57.350 30.769 0.00 0.00 39.27 3.53
278 279 8.650143 ATGCCTAGAAAGAAAGTATTTGGAAA 57.350 30.769 0.00 0.00 39.27 3.13
279 280 7.882179 TGCCTAGAAAGAAAGTATTTGGAAAC 58.118 34.615 0.00 0.00 39.27 2.78
280 281 7.021790 GCCTAGAAAGAAAGTATTTGGAAACG 58.978 38.462 0.00 0.00 39.27 3.60
281 282 7.094933 GCCTAGAAAGAAAGTATTTGGAAACGA 60.095 37.037 0.00 0.00 39.27 3.85
282 283 8.780249 CCTAGAAAGAAAGTATTTGGAAACGAA 58.220 33.333 0.00 0.00 39.27 3.85
283 284 9.813080 CTAGAAAGAAAGTATTTGGAAACGAAG 57.187 33.333 0.00 0.00 39.27 3.79
284 285 7.649057 AGAAAGAAAGTATTTGGAAACGAAGG 58.351 34.615 0.00 0.00 39.27 3.46
285 286 5.959618 AGAAAGTATTTGGAAACGAAGGG 57.040 39.130 0.00 0.00 39.27 3.95
286 287 5.627135 AGAAAGTATTTGGAAACGAAGGGA 58.373 37.500 0.00 0.00 39.27 4.20
287 288 5.705905 AGAAAGTATTTGGAAACGAAGGGAG 59.294 40.000 0.00 0.00 39.27 4.30
288 289 4.635699 AGTATTTGGAAACGAAGGGAGT 57.364 40.909 0.00 0.00 37.08 3.85
289 290 5.750352 AGTATTTGGAAACGAAGGGAGTA 57.250 39.130 0.00 0.00 37.08 2.59
290 291 5.731591 AGTATTTGGAAACGAAGGGAGTAG 58.268 41.667 0.00 0.00 37.08 2.57
291 292 4.635699 ATTTGGAAACGAAGGGAGTAGT 57.364 40.909 0.00 0.00 37.08 2.73
292 293 4.426736 TTTGGAAACGAAGGGAGTAGTT 57.573 40.909 0.00 0.00 0.00 2.24
293 294 3.396260 TGGAAACGAAGGGAGTAGTTG 57.604 47.619 0.00 0.00 0.00 3.16
294 295 2.967201 TGGAAACGAAGGGAGTAGTTGA 59.033 45.455 0.00 0.00 0.00 3.18
295 296 3.581332 TGGAAACGAAGGGAGTAGTTGAT 59.419 43.478 0.00 0.00 0.00 2.57
299 300 3.297736 ACGAAGGGAGTAGTTGATAGGG 58.702 50.000 0.00 0.00 0.00 3.53
312 313 2.370647 GATAGGGGTCGGCAGAGTGC 62.371 65.000 0.00 0.00 44.08 4.40
325 326 0.671781 AGAGTGCCGTGAGAATGTGC 60.672 55.000 0.00 0.00 0.00 4.57
329 330 2.027073 GCCGTGAGAATGTGCGTGA 61.027 57.895 0.00 0.00 0.00 4.35
335 336 2.096713 GTGAGAATGTGCGTGAGTTCAC 60.097 50.000 2.16 2.16 43.15 3.18
480 481 0.868406 CGGCCTCACTTTGTCTGAAC 59.132 55.000 0.00 0.00 0.00 3.18
549 550 1.014564 GCGCACTAGTTGTGGAGGTC 61.015 60.000 0.30 0.00 46.27 3.85
600 605 1.214062 GTCTCTGCACTCCACTCGG 59.786 63.158 0.00 0.00 0.00 4.63
601 606 1.228583 TCTCTGCACTCCACTCGGT 60.229 57.895 0.00 0.00 0.00 4.69
638 650 3.587797 TTTCCTCGGCGGATATGTATC 57.412 47.619 7.21 0.00 42.70 2.24
639 651 1.471119 TCCTCGGCGGATATGTATCC 58.529 55.000 7.21 8.69 46.97 2.59
663 689 2.025887 TGCCTTTCTTCATTCTCCTCCC 60.026 50.000 0.00 0.00 0.00 4.30
701 1039 1.003331 CGATCTCTTCGTCCTCTTCCG 60.003 57.143 0.00 0.00 43.01 4.30
702 1040 2.290464 GATCTCTTCGTCCTCTTCCGA 58.710 52.381 0.00 0.00 0.00 4.55
703 1041 2.195741 TCTCTTCGTCCTCTTCCGAA 57.804 50.000 0.00 0.00 40.45 4.30
704 1042 1.811359 TCTCTTCGTCCTCTTCCGAAC 59.189 52.381 0.00 0.00 38.09 3.95
705 1043 0.886563 TCTTCGTCCTCTTCCGAACC 59.113 55.000 0.00 0.00 38.09 3.62
738 1076 4.759782 ACTCACCTTGAATCCTTCGTATG 58.240 43.478 0.00 0.00 0.00 2.39
796 1394 0.172803 GCTCCCGCTTCTTTCGAGTA 59.827 55.000 0.00 0.00 0.00 2.59
807 1405 0.798776 TTTCGAGTAGTCCGTCCGTC 59.201 55.000 0.00 0.00 0.00 4.79
811 1409 1.700600 GAGTAGTCCGTCCGTCCGTC 61.701 65.000 0.00 0.00 0.00 4.79
826 1424 2.235016 CGTCCGTTCGTGTGCTTGT 61.235 57.895 0.00 0.00 0.00 3.16
830 1428 2.052237 GTTCGTGTGCTTGTGGCG 60.052 61.111 0.00 0.00 45.43 5.69
849 1447 1.334419 CGAACTTGTTCTTGGCAGCTG 60.334 52.381 10.11 10.11 0.00 4.24
850 1448 1.000938 GAACTTGTTCTTGGCAGCTGG 60.001 52.381 17.12 0.00 0.00 4.85
868 1466 4.081420 AGCTGGTTCAATCTATTCGACTGT 60.081 41.667 0.00 0.00 0.00 3.55
890 1488 2.774439 ACAGCGTTGCTTTTACCTTG 57.226 45.000 0.00 0.00 36.40 3.61
891 1489 2.294074 ACAGCGTTGCTTTTACCTTGA 58.706 42.857 0.00 0.00 36.40 3.02
918 1516 0.676151 CTCTGTTCTTGGAGCCAGCC 60.676 60.000 0.00 0.00 0.00 4.85
919 1517 1.073722 CTGTTCTTGGAGCCAGCCA 59.926 57.895 0.00 0.00 35.78 4.75
921 1519 2.034687 TTCTTGGAGCCAGCCAGC 59.965 61.111 0.00 0.00 39.52 4.85
922 1520 2.832778 TTCTTGGAGCCAGCCAGCA 61.833 57.895 0.00 0.00 39.52 4.41
923 1521 3.060615 CTTGGAGCCAGCCAGCAC 61.061 66.667 0.00 0.00 39.52 4.40
1034 1639 2.852449 AGGTCAGCCATAGATTCCCAAA 59.148 45.455 0.00 0.00 37.19 3.28
1058 1663 9.845740 AAATTTTCAAAATTAAGCAAGGTAGGT 57.154 25.926 8.55 0.00 0.00 3.08
1062 1667 7.023171 TCAAAATTAAGCAAGGTAGGTAGGA 57.977 36.000 0.00 0.00 0.00 2.94
1063 1668 7.110155 TCAAAATTAAGCAAGGTAGGTAGGAG 58.890 38.462 0.00 0.00 0.00 3.69
1079 1686 4.202567 GGTAGGAGGGGCAATTATCAATGA 60.203 45.833 0.00 0.00 0.00 2.57
1080 1687 3.837355 AGGAGGGGCAATTATCAATGAC 58.163 45.455 0.00 0.00 0.00 3.06
1081 1688 3.205056 AGGAGGGGCAATTATCAATGACA 59.795 43.478 0.00 0.00 0.00 3.58
1082 1689 3.571401 GGAGGGGCAATTATCAATGACAG 59.429 47.826 0.00 0.00 0.00 3.51
1086 1693 4.202151 GGGGCAATTATCAATGACAGAACC 60.202 45.833 0.00 0.00 0.00 3.62
1087 1694 4.646492 GGGCAATTATCAATGACAGAACCT 59.354 41.667 0.00 0.00 0.00 3.50
1089 1696 5.450965 GGCAATTATCAATGACAGAACCTGG 60.451 44.000 0.00 0.00 35.51 4.45
1091 1698 6.558009 CAATTATCAATGACAGAACCTGGTG 58.442 40.000 0.00 0.00 35.51 4.17
1093 1700 0.883833 CAATGACAGAACCTGGTGCC 59.116 55.000 0.00 0.00 35.51 5.01
1095 1702 0.478072 ATGACAGAACCTGGTGCCAA 59.522 50.000 0.00 0.00 35.51 4.52
1096 1703 0.478072 TGACAGAACCTGGTGCCAAT 59.522 50.000 0.00 0.00 35.51 3.16
1097 1704 1.168714 GACAGAACCTGGTGCCAATC 58.831 55.000 0.00 0.00 35.51 2.67
1098 1705 0.478072 ACAGAACCTGGTGCCAATCA 59.522 50.000 0.00 0.00 35.51 2.57
1099 1706 1.133513 ACAGAACCTGGTGCCAATCAA 60.134 47.619 0.00 0.00 35.51 2.57
1101 1708 2.165030 CAGAACCTGGTGCCAATCAATC 59.835 50.000 0.00 0.00 0.00 2.67
1102 1709 1.133025 GAACCTGGTGCCAATCAATCG 59.867 52.381 0.00 0.00 0.00 3.34
1103 1710 0.680921 ACCTGGTGCCAATCAATCGG 60.681 55.000 0.00 0.00 0.00 4.18
1104 1711 0.680921 CCTGGTGCCAATCAATCGGT 60.681 55.000 0.00 0.00 0.00 4.69
1105 1712 1.176527 CTGGTGCCAATCAATCGGTT 58.823 50.000 0.00 0.00 0.00 4.44
1106 1713 0.887247 TGGTGCCAATCAATCGGTTG 59.113 50.000 0.70 0.70 36.65 3.77
1107 1714 0.173255 GGTGCCAATCAATCGGTTGG 59.827 55.000 8.88 0.00 46.03 3.77
1108 1715 1.173043 GTGCCAATCAATCGGTTGGA 58.827 50.000 8.88 0.00 46.15 3.53
1109 1716 1.750778 GTGCCAATCAATCGGTTGGAT 59.249 47.619 8.88 0.00 46.15 3.41
1612 2537 5.473846 GTCATCTCCGGTATGTATCTTCAGA 59.526 44.000 15.88 2.17 0.00 3.27
1626 2551 4.145365 TCTTCAGACTTTTTCGGTCCAA 57.855 40.909 0.00 0.00 34.56 3.53
1627 2552 4.127171 TCTTCAGACTTTTTCGGTCCAAG 58.873 43.478 0.00 0.00 34.56 3.61
1679 2625 0.980423 GGCTCTTCAGTTCAGGGAGT 59.020 55.000 0.00 0.00 0.00 3.85
1680 2626 1.338579 GGCTCTTCAGTTCAGGGAGTG 60.339 57.143 0.00 0.00 0.00 3.51
1681 2627 1.620819 GCTCTTCAGTTCAGGGAGTGA 59.379 52.381 0.00 0.00 0.00 3.41
1682 2628 2.353605 GCTCTTCAGTTCAGGGAGTGAG 60.354 54.545 0.00 0.00 36.21 3.51
1683 2629 2.233431 CTCTTCAGTTCAGGGAGTGAGG 59.767 54.545 0.00 0.00 36.21 3.86
1684 2630 2.158310 TCTTCAGTTCAGGGAGTGAGGA 60.158 50.000 0.00 0.00 36.21 3.71
1685 2631 1.930251 TCAGTTCAGGGAGTGAGGAG 58.070 55.000 0.00 0.00 36.21 3.69
1698 2644 5.363005 GGGAGTGAGGAGCAGTTACTTATTA 59.637 44.000 0.00 0.00 0.00 0.98
1699 2645 6.127140 GGGAGTGAGGAGCAGTTACTTATTAA 60.127 42.308 0.00 0.00 0.00 1.40
1728 2674 5.321959 TGTTGATTCTTGTCTGTTGCAAA 57.678 34.783 0.00 0.00 0.00 3.68
1815 2761 1.345741 TCCCTCAACTCTGAACTGCAG 59.654 52.381 13.48 13.48 46.31 4.41
1859 2805 8.652810 AAAGATTTTGTTGGATTTGTCTGAAG 57.347 30.769 0.00 0.00 0.00 3.02
1860 2806 7.352079 AGATTTTGTTGGATTTGTCTGAAGT 57.648 32.000 0.00 0.00 0.00 3.01
1878 2827 4.991056 TGAAGTCAATGAACAGAGTACTGC 59.009 41.667 0.00 0.00 46.95 4.40
1920 2869 9.477484 AAGTAAACACTAGTGACTTTACTGATG 57.523 33.333 31.81 8.76 39.41 3.07
1923 2872 7.948278 AACACTAGTGACTTTACTGATGAAC 57.052 36.000 29.30 0.00 32.19 3.18
1937 2886 9.856488 TTTACTGATGAACTGATACAGTACTTC 57.144 33.333 4.84 0.83 44.62 3.01
1939 2888 7.316640 ACTGATGAACTGATACAGTACTTCAC 58.683 38.462 4.84 2.79 44.62 3.18
1948 2897 5.817296 TGATACAGTACTTCACAATGATGCC 59.183 40.000 0.00 0.00 0.00 4.40
1955 2904 4.202441 ACTTCACAATGATGCCTATGGAC 58.798 43.478 0.00 0.00 0.00 4.02
1957 2906 4.508551 TCACAATGATGCCTATGGACTT 57.491 40.909 0.00 0.00 0.00 3.01
1960 2909 1.888215 ATGATGCCTATGGACTTGCG 58.112 50.000 0.00 0.00 0.00 4.85
1964 2913 2.418368 TGCCTATGGACTTGCGAAAT 57.582 45.000 0.00 0.00 0.00 2.17
1965 2914 2.288666 TGCCTATGGACTTGCGAAATC 58.711 47.619 0.00 0.00 0.00 2.17
1967 2924 2.746472 GCCTATGGACTTGCGAAATCCT 60.746 50.000 5.67 0.00 33.34 3.24
1993 2950 8.606040 TTTTTCTGGAATTAGCAAAATTGGAG 57.394 30.769 2.14 0.00 0.00 3.86
1994 2951 5.329035 TCTGGAATTAGCAAAATTGGAGC 57.671 39.130 2.14 0.00 0.00 4.70
1996 2953 5.245751 TCTGGAATTAGCAAAATTGGAGCAA 59.754 36.000 2.14 0.00 0.00 3.91
1998 2955 5.700373 TGGAATTAGCAAAATTGGAGCAAAC 59.300 36.000 2.14 0.00 0.00 2.93
2000 2957 6.128472 GGAATTAGCAAAATTGGAGCAAACTG 60.128 38.462 2.14 0.00 0.00 3.16
2001 2958 3.825143 AGCAAAATTGGAGCAAACTGT 57.175 38.095 0.00 0.00 0.00 3.55
2003 2960 3.132646 AGCAAAATTGGAGCAAACTGTGA 59.867 39.130 0.00 0.00 0.00 3.58
2006 2963 2.957402 ATTGGAGCAAACTGTGAGGA 57.043 45.000 0.00 0.00 0.00 3.71
2008 2965 2.957402 TGGAGCAAACTGTGAGGATT 57.043 45.000 0.00 0.00 0.00 3.01
2010 2967 3.674997 TGGAGCAAACTGTGAGGATTAC 58.325 45.455 0.00 0.00 0.00 1.89
2013 2970 4.072131 GAGCAAACTGTGAGGATTACCAA 58.928 43.478 0.00 0.00 38.94 3.67
2014 2971 4.469657 AGCAAACTGTGAGGATTACCAAA 58.530 39.130 0.00 0.00 38.94 3.28
2016 2973 5.362430 AGCAAACTGTGAGGATTACCAAAAA 59.638 36.000 0.00 0.00 38.94 1.94
2040 2999 8.962884 AAAAACTAATTTTGGAGCAAACTGAT 57.037 26.923 0.00 0.00 39.73 2.90
2052 3011 5.106908 GGAGCAAACTGATAAGTTGTCACTC 60.107 44.000 0.00 3.87 30.45 3.51
2053 3012 4.449068 AGCAAACTGATAAGTTGTCACTCG 59.551 41.667 0.00 0.00 30.45 4.18
2056 3015 6.355638 CAAACTGATAAGTTGTCACTCGTTC 58.644 40.000 0.00 0.00 30.45 3.95
2074 3036 3.368116 CGTTCCTACTTCACTTACCTGGG 60.368 52.174 0.00 0.00 0.00 4.45
2128 3092 7.334090 AGCAGAACTGTATCATGACTTGTATT 58.666 34.615 0.00 0.00 0.00 1.89
2130 3094 8.454106 GCAGAACTGTATCATGACTTGTATTTT 58.546 33.333 0.00 0.00 0.00 1.82
2143 3115 7.904094 TGACTTGTATTTTTGTCACAAATTGC 58.096 30.769 3.17 0.00 34.94 3.56
2161 3150 7.864379 ACAAATTGCACTGAAAGAAAGTATGAG 59.136 33.333 0.00 0.00 37.43 2.90
2162 3151 7.750229 AATTGCACTGAAAGAAAGTATGAGA 57.250 32.000 0.00 0.00 37.43 3.27
2180 3169 8.414003 AGTATGAGAGAACTGTTAAATGCGATA 58.586 33.333 0.00 0.00 0.00 2.92
2185 3190 7.965045 AGAGAACTGTTAAATGCGATAAAGTC 58.035 34.615 0.00 0.00 0.00 3.01
2189 3194 7.849804 ACTGTTAAATGCGATAAAGTCTCAT 57.150 32.000 0.00 0.00 33.81 2.90
2218 3223 2.880268 TCAGTCACAGCCAAAATCACTG 59.120 45.455 0.00 0.00 37.45 3.66
2247 3252 4.685628 CAGTGATTTTGGTTTTCATTCCGG 59.314 41.667 0.00 0.00 0.00 5.14
2266 3283 4.351407 TCCGGCCAAAGGACCATAATTATA 59.649 41.667 2.24 0.00 31.86 0.98
2337 3374 7.047460 AGATCATTTGGTGGCTGAAATATTC 57.953 36.000 0.00 0.00 0.00 1.75
2396 3490 8.608844 AGTGACCAGAAAGTGAAAACTATTAG 57.391 34.615 0.00 0.00 0.00 1.73
2411 3650 9.493206 GAAAACTATTAGACTAGTTCTCTGTCG 57.507 37.037 0.00 0.00 40.25 4.35
2432 3672 2.925306 GCTTGTTCTGCCTGCTCATTTG 60.925 50.000 0.00 0.00 0.00 2.32
2444 3687 5.594926 CCTGCTCATTTGTTCTTCTTGTTT 58.405 37.500 0.00 0.00 0.00 2.83
2450 3693 7.524294 TCATTTGTTCTTCTTGTTTTTGCTC 57.476 32.000 0.00 0.00 0.00 4.26
2475 3718 0.179100 CAGATGCCGTCACTCCGATT 60.179 55.000 0.00 0.00 0.00 3.34
2478 3721 1.067212 GATGCCGTCACTCCGATTACT 59.933 52.381 0.00 0.00 0.00 2.24
2505 3748 4.730613 GCCATAATAGTGTTCCTGTTTGCG 60.731 45.833 0.00 0.00 0.00 4.85
2580 3823 0.180642 CCTGGCTGATCTGCATGAGT 59.819 55.000 23.84 0.00 34.04 3.41
2753 3996 9.906660 TCAGTATGAAATGAAACATTGGTTAAC 57.093 29.630 0.00 0.00 45.97 2.01
2821 4065 8.745837 CAAATGTAAACAGTCTTGACATGTTTC 58.254 33.333 21.99 17.09 43.92 2.78
2893 4137 5.538813 CCTACAGTGCAATCCAGGTACTATA 59.461 44.000 2.98 0.00 36.02 1.31
2927 4171 5.135508 TCAGCAACTAGTTCAGTTCCTAC 57.864 43.478 4.77 0.00 44.48 3.18
3170 4418 7.368480 GCAAAAACTTTGCCTCATCATTAAT 57.632 32.000 12.10 0.00 39.38 1.40
3209 4459 7.801716 TCCCTGATTGATTAATTAGAAACCG 57.198 36.000 3.83 0.00 33.09 4.44
3473 4724 3.199508 CCTTCTCCATCATCAACCAGAGT 59.800 47.826 0.00 0.00 0.00 3.24
3482 4733 1.002868 CAACCAGAGTCAGGCCCTG 60.003 63.158 3.69 3.69 0.00 4.45
3584 4835 2.893895 ATGGTGCTCTGCATCGCG 60.894 61.111 0.00 0.00 43.45 5.87
3743 4994 1.067776 GCCTTCTTCGTCTTCTTCGGA 60.068 52.381 0.00 0.00 0.00 4.55
3770 5021 2.490217 GCGCTCTACTTCTCGGCA 59.510 61.111 0.00 0.00 0.00 5.69
3773 5024 0.382158 CGCTCTACTTCTCGGCATCA 59.618 55.000 0.00 0.00 0.00 3.07
3788 5039 2.508526 GCATCACTCACCAAGTTCCTT 58.491 47.619 0.00 0.00 35.45 3.36
4385 5636 1.298413 CGTGGAGATACGCGTGGAG 60.298 63.158 24.59 0.37 39.35 3.86
4425 5676 0.037326 GACGAACACCATGGAGCTCA 60.037 55.000 21.47 1.87 0.00 4.26
4431 5682 4.100084 CCATGGAGCTCACGGCCA 62.100 66.667 17.19 4.57 43.05 5.36
4433 5684 2.191375 ATGGAGCTCACGGCCATG 59.809 61.111 17.19 0.00 40.72 3.66
4434 5685 4.783621 TGGAGCTCACGGCCATGC 62.784 66.667 17.19 0.17 43.05 4.06
4475 5732 1.700186 GTGAAGAGGGTGAGGTTCCTT 59.300 52.381 0.00 0.00 32.74 3.36
4625 5882 3.400928 CTGCTCAGGAGGCTGGCT 61.401 66.667 2.24 2.24 0.00 4.75
4826 6083 4.213270 CGTGGTGCGTGATGGAAATATTAT 59.787 41.667 0.00 0.00 35.54 1.28
4831 6088 6.978080 GGTGCGTGATGGAAATATTATGTTTT 59.022 34.615 0.00 0.00 0.00 2.43
4832 6089 7.043458 GGTGCGTGATGGAAATATTATGTTTTG 60.043 37.037 0.00 0.00 0.00 2.44
4833 6090 7.700234 GTGCGTGATGGAAATATTATGTTTTGA 59.300 33.333 0.00 0.00 0.00 2.69
4879 6137 1.217244 GTCGCGGGGTGATAGTGTT 59.783 57.895 6.13 0.00 0.00 3.32
4906 6300 2.442272 ACCGCCTGATAGCCGTCT 60.442 61.111 0.00 0.00 0.00 4.18
4918 6312 0.105760 AGCCGTCTGATCTCTCCCAT 60.106 55.000 0.00 0.00 0.00 4.00
4951 6347 1.531883 GCAACAAGGCTAGTATTGCGC 60.532 52.381 0.00 0.00 36.63 6.09
4961 6361 3.466314 TATTGCGCTCGGCCCTCA 61.466 61.111 9.73 0.00 42.61 3.86
5030 6433 0.106519 ACAAGGCCTCTGTTGCAGTT 60.107 50.000 5.23 0.00 32.61 3.16
5063 6466 3.999764 AAATCCCATTATTCTGGCCCT 57.000 42.857 0.00 0.00 34.77 5.19
5065 6468 2.754012 TCCCATTATTCTGGCCCTTG 57.246 50.000 0.00 0.00 34.77 3.61
5079 6482 0.171007 CCCTTGCATACAAAGGTGCG 59.829 55.000 0.84 0.00 44.11 5.34
5114 6517 2.433436 GCCCTCCTGTTACAAAATCGT 58.567 47.619 0.00 0.00 0.00 3.73
5115 6518 2.161609 GCCCTCCTGTTACAAAATCGTG 59.838 50.000 0.00 0.00 0.00 4.35
5170 6573 9.412460 TCAAAATAATCTAAGTTGCATCAGGAT 57.588 29.630 0.00 0.00 0.00 3.24
5198 6601 2.289882 TGGTCAATCAAGGACAGAGCAG 60.290 50.000 0.00 0.00 37.00 4.24
5281 6685 4.178540 TGTTTGCCGCTACTCACTATTAC 58.821 43.478 0.00 0.00 0.00 1.89
5373 6777 2.438868 GTGAAGCCCACATGGTTTTC 57.561 50.000 0.00 1.52 45.03 2.29
5378 6782 1.543944 GCCCACATGGTTTTCAGGGG 61.544 60.000 0.00 0.00 37.88 4.79
5457 6861 9.739276 TCTTAGACTATTTGATGAACCAACAAT 57.261 29.630 0.00 0.00 0.00 2.71
5508 6912 6.325919 AGCATCTTAAACCGTTTGATGAAA 57.674 33.333 20.53 3.28 37.33 2.69
5570 6976 4.570772 GGCAATATACGTGTGATGTGAAGT 59.429 41.667 0.00 0.00 0.00 3.01
5658 7064 2.540931 GACCAAACAAATGCAGTGCTTG 59.459 45.455 17.60 15.45 0.00 4.01
5705 7111 5.458041 AAACAGCAGCAACACTTATTCAT 57.542 34.783 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.965918 GCATCTTTCGTGGCTACTAAAAATC 59.034 40.000 0.00 0.00 0.00 2.17
1 2 5.447279 CGCATCTTTCGTGGCTACTAAAAAT 60.447 40.000 0.00 0.00 0.00 1.82
2 3 4.142988 CGCATCTTTCGTGGCTACTAAAAA 60.143 41.667 0.00 0.00 0.00 1.94
3 4 3.369756 CGCATCTTTCGTGGCTACTAAAA 59.630 43.478 0.00 0.00 0.00 1.52
4 5 2.927477 CGCATCTTTCGTGGCTACTAAA 59.073 45.455 0.00 0.00 0.00 1.85
5 6 2.164827 TCGCATCTTTCGTGGCTACTAA 59.835 45.455 0.00 0.00 0.00 2.24
6 7 1.746787 TCGCATCTTTCGTGGCTACTA 59.253 47.619 0.00 0.00 0.00 1.82
7 8 0.530744 TCGCATCTTTCGTGGCTACT 59.469 50.000 0.00 0.00 0.00 2.57
8 9 0.924090 CTCGCATCTTTCGTGGCTAC 59.076 55.000 0.00 0.00 0.00 3.58
9 10 0.179111 CCTCGCATCTTTCGTGGCTA 60.179 55.000 0.00 0.00 34.51 3.93
10 11 1.448540 CCTCGCATCTTTCGTGGCT 60.449 57.895 0.00 0.00 34.51 4.75
11 12 3.093278 CCTCGCATCTTTCGTGGC 58.907 61.111 0.00 0.00 34.51 5.01
12 13 2.802667 CGCCTCGCATCTTTCGTGG 61.803 63.158 0.00 0.00 41.79 4.94
13 14 1.746727 CTCGCCTCGCATCTTTCGTG 61.747 60.000 0.00 0.00 0.00 4.35
14 15 1.517257 CTCGCCTCGCATCTTTCGT 60.517 57.895 0.00 0.00 0.00 3.85
15 16 2.864931 GCTCGCCTCGCATCTTTCG 61.865 63.158 0.00 0.00 0.00 3.46
16 17 2.529619 GGCTCGCCTCGCATCTTTC 61.530 63.158 0.00 0.00 0.00 2.62
17 18 2.512515 GGCTCGCCTCGCATCTTT 60.513 61.111 0.00 0.00 0.00 2.52
18 19 4.537433 GGGCTCGCCTCGCATCTT 62.537 66.667 8.00 0.00 36.10 2.40
121 122 3.917300 AGGAACGGAAGGAGTATCATCT 58.083 45.455 0.00 0.00 36.25 2.90
125 126 7.287512 AGTATTTAGGAACGGAAGGAGTATC 57.712 40.000 0.00 0.00 0.00 2.24
126 127 7.125356 ACAAGTATTTAGGAACGGAAGGAGTAT 59.875 37.037 0.00 0.00 0.00 2.12
127 128 6.438425 ACAAGTATTTAGGAACGGAAGGAGTA 59.562 38.462 0.00 0.00 0.00 2.59
129 130 5.731591 ACAAGTATTTAGGAACGGAAGGAG 58.268 41.667 0.00 0.00 0.00 3.69
130 131 5.482878 AGACAAGTATTTAGGAACGGAAGGA 59.517 40.000 0.00 0.00 0.00 3.36
131 132 5.731591 AGACAAGTATTTAGGAACGGAAGG 58.268 41.667 0.00 0.00 0.00 3.46
132 133 7.603024 AGAAAGACAAGTATTTAGGAACGGAAG 59.397 37.037 0.00 0.00 0.00 3.46
134 135 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
135 136 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
136 137 9.291664 CTCTAGAAAGACAAGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
161 162 9.257651 GCCGTATGTAGTCACTTATTAAAATCT 57.742 33.333 0.00 0.00 0.00 2.40
162 163 8.212495 CGCCGTATGTAGTCACTTATTAAAATC 58.788 37.037 0.00 0.00 0.00 2.17
163 164 7.306983 GCGCCGTATGTAGTCACTTATTAAAAT 60.307 37.037 0.00 0.00 0.00 1.82
164 165 6.019640 GCGCCGTATGTAGTCACTTATTAAAA 60.020 38.462 0.00 0.00 0.00 1.52
165 166 5.459762 GCGCCGTATGTAGTCACTTATTAAA 59.540 40.000 0.00 0.00 0.00 1.52
166 167 4.977963 GCGCCGTATGTAGTCACTTATTAA 59.022 41.667 0.00 0.00 0.00 1.40
167 168 4.036616 TGCGCCGTATGTAGTCACTTATTA 59.963 41.667 4.18 0.00 0.00 0.98
168 169 3.181484 TGCGCCGTATGTAGTCACTTATT 60.181 43.478 4.18 0.00 0.00 1.40
169 170 2.359848 TGCGCCGTATGTAGTCACTTAT 59.640 45.455 4.18 0.00 0.00 1.73
170 171 1.744522 TGCGCCGTATGTAGTCACTTA 59.255 47.619 4.18 0.00 0.00 2.24
171 172 0.528924 TGCGCCGTATGTAGTCACTT 59.471 50.000 4.18 0.00 0.00 3.16
172 173 0.528924 TTGCGCCGTATGTAGTCACT 59.471 50.000 4.18 0.00 0.00 3.41
173 174 1.352114 TTTGCGCCGTATGTAGTCAC 58.648 50.000 4.18 0.00 0.00 3.67
174 175 2.081725 TTTTGCGCCGTATGTAGTCA 57.918 45.000 4.18 0.00 0.00 3.41
175 176 2.605818 TCATTTTGCGCCGTATGTAGTC 59.394 45.455 4.18 0.00 0.00 2.59
176 177 2.623535 TCATTTTGCGCCGTATGTAGT 58.376 42.857 4.18 0.00 0.00 2.73
177 178 3.666883 TTCATTTTGCGCCGTATGTAG 57.333 42.857 4.18 0.00 0.00 2.74
178 179 3.623510 TCATTCATTTTGCGCCGTATGTA 59.376 39.130 4.18 0.00 0.00 2.29
179 180 2.421775 TCATTCATTTTGCGCCGTATGT 59.578 40.909 4.18 0.00 0.00 2.29
180 181 3.063670 TCATTCATTTTGCGCCGTATG 57.936 42.857 4.18 5.63 0.00 2.39
181 182 3.773860 TTCATTCATTTTGCGCCGTAT 57.226 38.095 4.18 0.00 0.00 3.06
182 183 3.376859 AGATTCATTCATTTTGCGCCGTA 59.623 39.130 4.18 0.00 0.00 4.02
183 184 2.164219 AGATTCATTCATTTTGCGCCGT 59.836 40.909 4.18 0.00 0.00 5.68
184 185 2.801063 AGATTCATTCATTTTGCGCCG 58.199 42.857 4.18 0.00 0.00 6.46
185 186 4.500477 GTGTAGATTCATTCATTTTGCGCC 59.500 41.667 4.18 0.00 0.00 6.53
186 187 5.335127 AGTGTAGATTCATTCATTTTGCGC 58.665 37.500 0.00 0.00 0.00 6.09
187 188 7.801547 AAAGTGTAGATTCATTCATTTTGCG 57.198 32.000 0.00 0.00 0.00 4.85
225 226 5.808366 ATGGACTCAACATACGGATGTAT 57.192 39.130 15.10 0.00 45.93 2.29
226 227 5.607939 AATGGACTCAACATACGGATGTA 57.392 39.130 15.10 0.00 45.93 2.29
228 229 6.918892 TTAAATGGACTCAACATACGGATG 57.081 37.500 5.94 5.94 39.16 3.51
229 230 7.931578 TTTTAAATGGACTCAACATACGGAT 57.068 32.000 0.00 0.00 0.00 4.18
230 231 7.627513 GCATTTTAAATGGACTCAACATACGGA 60.628 37.037 17.89 0.00 0.00 4.69
231 232 6.472163 GCATTTTAAATGGACTCAACATACGG 59.528 38.462 17.89 0.00 0.00 4.02
232 233 6.472163 GGCATTTTAAATGGACTCAACATACG 59.528 38.462 17.89 0.00 0.00 3.06
233 234 7.547227 AGGCATTTTAAATGGACTCAACATAC 58.453 34.615 17.89 0.00 0.00 2.39
234 235 7.716799 AGGCATTTTAAATGGACTCAACATA 57.283 32.000 17.89 0.00 0.00 2.29
235 236 6.610075 AGGCATTTTAAATGGACTCAACAT 57.390 33.333 17.89 0.00 0.00 2.71
236 237 6.945435 TCTAGGCATTTTAAATGGACTCAACA 59.055 34.615 17.89 0.00 0.00 3.33
237 238 7.391148 TCTAGGCATTTTAAATGGACTCAAC 57.609 36.000 17.89 1.13 0.00 3.18
238 239 8.415950 TTTCTAGGCATTTTAAATGGACTCAA 57.584 30.769 17.89 2.83 0.00 3.02
239 240 7.888021 TCTTTCTAGGCATTTTAAATGGACTCA 59.112 33.333 17.89 0.00 0.00 3.41
240 241 8.281212 TCTTTCTAGGCATTTTAAATGGACTC 57.719 34.615 17.89 2.75 0.00 3.36
241 242 8.650143 TTCTTTCTAGGCATTTTAAATGGACT 57.350 30.769 17.89 9.51 0.00 3.85
242 243 9.358872 CTTTCTTTCTAGGCATTTTAAATGGAC 57.641 33.333 17.89 3.72 0.00 4.02
243 244 9.088987 ACTTTCTTTCTAGGCATTTTAAATGGA 57.911 29.630 17.89 5.27 0.00 3.41
250 251 9.088987 TCCAAATACTTTCTTTCTAGGCATTTT 57.911 29.630 0.00 0.00 0.00 1.82
251 252 8.650143 TCCAAATACTTTCTTTCTAGGCATTT 57.350 30.769 0.00 0.00 0.00 2.32
252 253 8.650143 TTCCAAATACTTTCTTTCTAGGCATT 57.350 30.769 0.00 0.00 0.00 3.56
253 254 8.523658 GTTTCCAAATACTTTCTTTCTAGGCAT 58.476 33.333 0.00 0.00 0.00 4.40
254 255 7.308348 CGTTTCCAAATACTTTCTTTCTAGGCA 60.308 37.037 0.00 0.00 0.00 4.75
255 256 7.021790 CGTTTCCAAATACTTTCTTTCTAGGC 58.978 38.462 0.00 0.00 0.00 3.93
256 257 8.319143 TCGTTTCCAAATACTTTCTTTCTAGG 57.681 34.615 0.00 0.00 0.00 3.02
257 258 9.813080 CTTCGTTTCCAAATACTTTCTTTCTAG 57.187 33.333 0.00 0.00 0.00 2.43
258 259 8.780249 CCTTCGTTTCCAAATACTTTCTTTCTA 58.220 33.333 0.00 0.00 0.00 2.10
259 260 7.255486 CCCTTCGTTTCCAAATACTTTCTTTCT 60.255 37.037 0.00 0.00 0.00 2.52
260 261 6.861572 CCCTTCGTTTCCAAATACTTTCTTTC 59.138 38.462 0.00 0.00 0.00 2.62
261 262 6.548251 TCCCTTCGTTTCCAAATACTTTCTTT 59.452 34.615 0.00 0.00 0.00 2.52
262 263 6.066032 TCCCTTCGTTTCCAAATACTTTCTT 58.934 36.000 0.00 0.00 0.00 2.52
263 264 5.627135 TCCCTTCGTTTCCAAATACTTTCT 58.373 37.500 0.00 0.00 0.00 2.52
264 265 5.472478 ACTCCCTTCGTTTCCAAATACTTTC 59.528 40.000 0.00 0.00 0.00 2.62
265 266 5.382616 ACTCCCTTCGTTTCCAAATACTTT 58.617 37.500 0.00 0.00 0.00 2.66
266 267 4.981812 ACTCCCTTCGTTTCCAAATACTT 58.018 39.130 0.00 0.00 0.00 2.24
267 268 4.635699 ACTCCCTTCGTTTCCAAATACT 57.364 40.909 0.00 0.00 0.00 2.12
268 269 5.485620 ACTACTCCCTTCGTTTCCAAATAC 58.514 41.667 0.00 0.00 0.00 1.89
269 270 5.750352 ACTACTCCCTTCGTTTCCAAATA 57.250 39.130 0.00 0.00 0.00 1.40
270 271 4.635699 ACTACTCCCTTCGTTTCCAAAT 57.364 40.909 0.00 0.00 0.00 2.32
271 272 4.131596 CAACTACTCCCTTCGTTTCCAAA 58.868 43.478 0.00 0.00 0.00 3.28
272 273 3.388676 TCAACTACTCCCTTCGTTTCCAA 59.611 43.478 0.00 0.00 0.00 3.53
273 274 2.967201 TCAACTACTCCCTTCGTTTCCA 59.033 45.455 0.00 0.00 0.00 3.53
274 275 3.672767 TCAACTACTCCCTTCGTTTCC 57.327 47.619 0.00 0.00 0.00 3.13
275 276 5.349809 CCTATCAACTACTCCCTTCGTTTC 58.650 45.833 0.00 0.00 0.00 2.78
276 277 4.161754 CCCTATCAACTACTCCCTTCGTTT 59.838 45.833 0.00 0.00 0.00 3.60
277 278 3.705072 CCCTATCAACTACTCCCTTCGTT 59.295 47.826 0.00 0.00 0.00 3.85
278 279 3.297736 CCCTATCAACTACTCCCTTCGT 58.702 50.000 0.00 0.00 0.00 3.85
279 280 2.628657 CCCCTATCAACTACTCCCTTCG 59.371 54.545 0.00 0.00 0.00 3.79
280 281 3.642377 GACCCCTATCAACTACTCCCTTC 59.358 52.174 0.00 0.00 0.00 3.46
281 282 3.655384 GACCCCTATCAACTACTCCCTT 58.345 50.000 0.00 0.00 0.00 3.95
282 283 2.424523 CGACCCCTATCAACTACTCCCT 60.425 54.545 0.00 0.00 0.00 4.20
283 284 1.962100 CGACCCCTATCAACTACTCCC 59.038 57.143 0.00 0.00 0.00 4.30
284 285 1.962100 CCGACCCCTATCAACTACTCC 59.038 57.143 0.00 0.00 0.00 3.85
285 286 1.340568 GCCGACCCCTATCAACTACTC 59.659 57.143 0.00 0.00 0.00 2.59
286 287 1.342674 TGCCGACCCCTATCAACTACT 60.343 52.381 0.00 0.00 0.00 2.57
287 288 1.068741 CTGCCGACCCCTATCAACTAC 59.931 57.143 0.00 0.00 0.00 2.73
288 289 1.063492 TCTGCCGACCCCTATCAACTA 60.063 52.381 0.00 0.00 0.00 2.24
289 290 0.325296 TCTGCCGACCCCTATCAACT 60.325 55.000 0.00 0.00 0.00 3.16
290 291 0.105039 CTCTGCCGACCCCTATCAAC 59.895 60.000 0.00 0.00 0.00 3.18
291 292 0.325296 ACTCTGCCGACCCCTATCAA 60.325 55.000 0.00 0.00 0.00 2.57
292 293 1.043116 CACTCTGCCGACCCCTATCA 61.043 60.000 0.00 0.00 0.00 2.15
293 294 1.742768 CACTCTGCCGACCCCTATC 59.257 63.158 0.00 0.00 0.00 2.08
294 295 2.435693 GCACTCTGCCGACCCCTAT 61.436 63.158 0.00 0.00 37.42 2.57
295 296 3.075005 GCACTCTGCCGACCCCTA 61.075 66.667 0.00 0.00 37.42 3.53
312 313 0.667487 ACTCACGCACATTCTCACGG 60.667 55.000 0.00 0.00 0.00 4.94
329 330 2.938253 CATGTGCGTGCGTGAACT 59.062 55.556 0.00 0.00 0.00 3.01
335 336 2.462255 AAGAAAGGCATGTGCGTGCG 62.462 55.000 9.87 0.00 45.97 5.34
336 337 0.318955 AAAGAAAGGCATGTGCGTGC 60.319 50.000 7.78 7.78 44.31 5.34
337 338 1.269206 ACAAAGAAAGGCATGTGCGTG 60.269 47.619 0.51 0.00 43.26 5.34
338 339 1.001378 GACAAAGAAAGGCATGTGCGT 60.001 47.619 0.00 0.00 43.26 5.24
339 340 1.666888 GGACAAAGAAAGGCATGTGCG 60.667 52.381 0.00 0.00 43.26 5.34
373 374 1.891919 CCGTGAGTGTGGTTGGGTG 60.892 63.158 0.00 0.00 0.00 4.61
480 481 8.023050 AGATAATCAACTCAAAAACTCACTCG 57.977 34.615 0.00 0.00 0.00 4.18
509 510 2.037901 CTCTCCCTAGCTGCTTCATCA 58.962 52.381 7.79 0.00 0.00 3.07
510 511 1.344114 CCTCTCCCTAGCTGCTTCATC 59.656 57.143 7.79 0.00 0.00 2.92
511 512 1.422531 CCTCTCCCTAGCTGCTTCAT 58.577 55.000 7.79 0.00 0.00 2.57
607 612 0.251165 CCGAGGAAAACATGGTGGGT 60.251 55.000 0.00 0.00 0.00 4.51
638 650 2.615912 GGAGAATGAAGAAAGGCATCGG 59.384 50.000 0.00 0.00 0.00 4.18
639 651 3.539604 AGGAGAATGAAGAAAGGCATCG 58.460 45.455 0.00 0.00 0.00 3.84
640 652 3.882288 GGAGGAGAATGAAGAAAGGCATC 59.118 47.826 0.00 0.00 0.00 3.91
641 653 3.372458 GGGAGGAGAATGAAGAAAGGCAT 60.372 47.826 0.00 0.00 0.00 4.40
642 654 2.025887 GGGAGGAGAATGAAGAAAGGCA 60.026 50.000 0.00 0.00 0.00 4.75
663 689 5.192927 AGATCGAGGAAGCAGATAGATAGG 58.807 45.833 0.00 0.00 0.00 2.57
701 1039 3.974642 AGGTGAGTATATGAAGGGGGTTC 59.025 47.826 0.00 0.00 35.48 3.62
702 1040 4.022359 AGGTGAGTATATGAAGGGGGTT 57.978 45.455 0.00 0.00 0.00 4.11
703 1041 3.716872 CAAGGTGAGTATATGAAGGGGGT 59.283 47.826 0.00 0.00 0.00 4.95
704 1042 3.973973 TCAAGGTGAGTATATGAAGGGGG 59.026 47.826 0.00 0.00 0.00 5.40
705 1043 5.630415 TTCAAGGTGAGTATATGAAGGGG 57.370 43.478 0.00 0.00 0.00 4.79
738 1076 4.808364 ACGGCGCTATACTATACTAGTAGC 59.192 45.833 6.90 5.18 43.85 3.58
807 1405 2.660552 AAGCACACGAACGGACGG 60.661 61.111 8.20 0.91 37.61 4.79
811 1409 2.631428 CCACAAGCACACGAACGG 59.369 61.111 0.00 0.00 0.00 4.44
814 1412 1.815840 TTCGCCACAAGCACACGAA 60.816 52.632 0.00 0.00 44.04 3.85
815 1413 2.202946 TTCGCCACAAGCACACGA 60.203 55.556 0.00 0.00 44.04 4.35
826 1424 0.749818 TGCCAAGAACAAGTTCGCCA 60.750 50.000 7.25 1.72 43.97 5.69
830 1428 1.000938 CCAGCTGCCAAGAACAAGTTC 60.001 52.381 8.66 4.82 39.78 3.01
849 1447 7.591006 TGTTAACAGTCGAATAGATTGAACC 57.409 36.000 3.59 0.00 38.69 3.62
850 1448 7.174082 GCTGTTAACAGTCGAATAGATTGAAC 58.826 38.462 30.90 9.56 45.45 3.18
868 1466 4.335874 TCAAGGTAAAAGCAACGCTGTTAA 59.664 37.500 0.23 0.00 39.65 2.01
874 1472 3.552604 TCATCAAGGTAAAAGCAACGC 57.447 42.857 0.00 0.00 0.00 4.84
875 1473 4.853196 CACATCATCAAGGTAAAAGCAACG 59.147 41.667 0.00 0.00 0.00 4.10
890 1488 3.603532 TCCAAGAACAGAGCACATCATC 58.396 45.455 0.00 0.00 0.00 2.92
891 1489 3.607741 CTCCAAGAACAGAGCACATCAT 58.392 45.455 0.00 0.00 0.00 2.45
918 1516 3.314635 GCTCCTATGATTTCCTTGTGCTG 59.685 47.826 0.00 0.00 0.00 4.41
919 1517 3.549794 GCTCCTATGATTTCCTTGTGCT 58.450 45.455 0.00 0.00 0.00 4.40
921 1519 3.535561 ACGCTCCTATGATTTCCTTGTG 58.464 45.455 0.00 0.00 0.00 3.33
922 1520 3.914426 ACGCTCCTATGATTTCCTTGT 57.086 42.857 0.00 0.00 0.00 3.16
923 1521 3.743396 GCTACGCTCCTATGATTTCCTTG 59.257 47.826 0.00 0.00 0.00 3.61
1058 1663 4.415179 TGTCATTGATAATTGCCCCTCCTA 59.585 41.667 0.00 0.00 0.00 2.94
1059 1664 3.205056 TGTCATTGATAATTGCCCCTCCT 59.795 43.478 0.00 0.00 0.00 3.69
1060 1665 3.565307 TGTCATTGATAATTGCCCCTCC 58.435 45.455 0.00 0.00 0.00 4.30
1062 1667 4.524802 TCTGTCATTGATAATTGCCCCT 57.475 40.909 0.00 0.00 0.00 4.79
1063 1668 4.202151 GGTTCTGTCATTGATAATTGCCCC 60.202 45.833 0.00 0.00 0.00 5.80
1079 1686 0.478072 TGATTGGCACCAGGTTCTGT 59.522 50.000 0.00 0.00 0.00 3.41
1080 1687 1.619654 TTGATTGGCACCAGGTTCTG 58.380 50.000 0.00 0.00 0.00 3.02
1081 1688 2.450476 GATTGATTGGCACCAGGTTCT 58.550 47.619 0.00 0.00 0.00 3.01
1082 1689 1.133025 CGATTGATTGGCACCAGGTTC 59.867 52.381 0.00 0.00 0.00 3.62
1086 1693 1.135315 CAACCGATTGATTGGCACCAG 60.135 52.381 0.00 0.00 38.15 4.00
1087 1694 0.887247 CAACCGATTGATTGGCACCA 59.113 50.000 0.00 0.00 38.15 4.17
1089 1696 1.173043 TCCAACCGATTGATTGGCAC 58.827 50.000 0.32 0.00 44.34 5.01
1091 1698 1.536709 GCATCCAACCGATTGATTGGC 60.537 52.381 0.32 0.00 44.34 4.52
1093 1700 2.797087 GCTGCATCCAACCGATTGATTG 60.797 50.000 0.00 0.00 38.15 2.67
1095 1702 1.027357 GCTGCATCCAACCGATTGAT 58.973 50.000 0.00 0.00 38.15 2.57
1096 1703 1.368345 CGCTGCATCCAACCGATTGA 61.368 55.000 0.00 0.00 38.15 2.57
1097 1704 1.063006 CGCTGCATCCAACCGATTG 59.937 57.895 0.00 0.00 35.40 2.67
1098 1705 2.114670 CCGCTGCATCCAACCGATT 61.115 57.895 0.00 0.00 0.00 3.34
1099 1706 2.514592 CCGCTGCATCCAACCGAT 60.515 61.111 0.00 0.00 0.00 4.18
1101 1708 4.776322 TCCCGCTGCATCCAACCG 62.776 66.667 0.00 0.00 0.00 4.44
1102 1709 2.825836 CTCCCGCTGCATCCAACC 60.826 66.667 0.00 0.00 0.00 3.77
1103 1710 2.109126 GTCTCCCGCTGCATCCAAC 61.109 63.158 0.00 0.00 0.00 3.77
1104 1711 1.913951 ATGTCTCCCGCTGCATCCAA 61.914 55.000 0.00 0.00 0.00 3.53
1105 1712 2.369633 ATGTCTCCCGCTGCATCCA 61.370 57.895 0.00 0.00 0.00 3.41
1106 1713 1.890979 CATGTCTCCCGCTGCATCC 60.891 63.158 0.00 0.00 0.00 3.51
1107 1714 1.890979 CCATGTCTCCCGCTGCATC 60.891 63.158 0.00 0.00 0.00 3.91
1108 1715 2.191375 CCATGTCTCCCGCTGCAT 59.809 61.111 0.00 0.00 0.00 3.96
1109 1716 4.783621 GCCATGTCTCCCGCTGCA 62.784 66.667 0.00 0.00 0.00 4.41
1612 2537 4.948004 AGAAAGAACTTGGACCGAAAAAGT 59.052 37.500 0.00 0.00 35.70 2.66
1641 2570 2.803133 GCCAACTGAAGAACAAAAGGCC 60.803 50.000 0.00 0.00 34.58 5.19
1642 2571 2.101415 AGCCAACTGAAGAACAAAAGGC 59.899 45.455 0.00 0.00 38.16 4.35
1643 2572 3.633986 AGAGCCAACTGAAGAACAAAAGG 59.366 43.478 0.00 0.00 0.00 3.11
1644 2573 4.907879 AGAGCCAACTGAAGAACAAAAG 57.092 40.909 0.00 0.00 0.00 2.27
1645 2574 4.704540 TGAAGAGCCAACTGAAGAACAAAA 59.295 37.500 0.00 0.00 0.00 2.44
1646 2575 4.269183 TGAAGAGCCAACTGAAGAACAAA 58.731 39.130 0.00 0.00 0.00 2.83
1647 2576 3.879295 CTGAAGAGCCAACTGAAGAACAA 59.121 43.478 0.00 0.00 0.00 2.83
1648 2577 3.118261 ACTGAAGAGCCAACTGAAGAACA 60.118 43.478 0.00 0.00 0.00 3.18
1698 2644 6.000219 ACAGACAAGAATCAACAGCAGTATT 59.000 36.000 0.00 0.00 0.00 1.89
1699 2645 5.555017 ACAGACAAGAATCAACAGCAGTAT 58.445 37.500 0.00 0.00 0.00 2.12
1709 2655 4.300803 GCATTTGCAACAGACAAGAATCA 58.699 39.130 0.00 0.00 41.59 2.57
1728 2674 0.250467 AACAGCCGAGAACACTGCAT 60.250 50.000 0.00 0.00 34.72 3.96
1846 2792 6.205464 TCTGTTCATTGACTTCAGACAAATCC 59.795 38.462 9.74 0.00 33.89 3.01
1857 2803 4.752101 GTGCAGTACTCTGTTCATTGACTT 59.248 41.667 0.00 0.00 43.05 3.01
1859 2805 4.058124 TGTGCAGTACTCTGTTCATTGAC 58.942 43.478 0.00 0.00 43.05 3.18
1860 2806 4.335400 TGTGCAGTACTCTGTTCATTGA 57.665 40.909 0.00 0.00 43.05 2.57
1910 2859 9.862371 AAGTACTGTATCAGTTCATCAGTAAAG 57.138 33.333 7.70 0.00 42.59 1.85
1920 2869 8.598924 CATCATTGTGAAGTACTGTATCAGTTC 58.401 37.037 7.70 3.37 42.59 3.01
1923 2872 6.018425 GGCATCATTGTGAAGTACTGTATCAG 60.018 42.308 0.00 0.00 37.52 2.90
1937 2886 3.243301 GCAAGTCCATAGGCATCATTGTG 60.243 47.826 0.00 0.00 0.00 3.33
1939 2888 2.031420 CGCAAGTCCATAGGCATCATTG 60.031 50.000 0.00 0.00 0.00 2.82
1948 2897 5.567138 AAAAGGATTTCGCAAGTCCATAG 57.433 39.130 11.17 0.00 37.28 2.23
1973 2930 5.075858 TGCTCCAATTTTGCTAATTCCAG 57.924 39.130 0.00 0.00 0.00 3.86
1974 2931 5.480642 TTGCTCCAATTTTGCTAATTCCA 57.519 34.783 0.00 0.00 0.00 3.53
1988 2945 2.957402 ATCCTCACAGTTTGCTCCAA 57.043 45.000 0.00 0.00 0.00 3.53
1992 2949 3.788227 TGGTAATCCTCACAGTTTGCT 57.212 42.857 0.00 0.00 34.23 3.91
1993 2950 4.846779 TTTGGTAATCCTCACAGTTTGC 57.153 40.909 0.00 0.00 34.23 3.68
2017 2974 9.696917 CTTATCAGTTTGCTCCAAAATTAGTTT 57.303 29.630 0.00 0.00 35.03 2.66
2018 2975 8.860088 ACTTATCAGTTTGCTCCAAAATTAGTT 58.140 29.630 0.00 0.00 35.03 2.24
2020 2977 9.132521 CAACTTATCAGTTTGCTCCAAAATTAG 57.867 33.333 0.00 0.00 40.66 1.73
2021 2978 8.637986 ACAACTTATCAGTTTGCTCCAAAATTA 58.362 29.630 0.00 0.00 40.66 1.40
2023 2980 7.054491 ACAACTTATCAGTTTGCTCCAAAAT 57.946 32.000 0.00 0.00 40.66 1.82
2024 2981 6.096141 TGACAACTTATCAGTTTGCTCCAAAA 59.904 34.615 0.00 0.00 40.66 2.44
2025 2982 5.592282 TGACAACTTATCAGTTTGCTCCAAA 59.408 36.000 0.00 0.00 40.66 3.28
2027 2984 4.515191 GTGACAACTTATCAGTTTGCTCCA 59.485 41.667 0.00 0.00 40.66 3.86
2028 2985 4.757149 AGTGACAACTTATCAGTTTGCTCC 59.243 41.667 0.00 0.00 40.66 4.70
2029 2986 5.388890 CGAGTGACAACTTATCAGTTTGCTC 60.389 44.000 0.00 0.00 40.66 4.26
2031 2988 4.211374 ACGAGTGACAACTTATCAGTTTGC 59.789 41.667 0.00 0.00 40.66 3.68
2032 2989 5.907197 ACGAGTGACAACTTATCAGTTTG 57.093 39.130 0.00 0.00 40.66 2.93
2033 2990 5.465724 GGAACGAGTGACAACTTATCAGTTT 59.534 40.000 0.00 0.00 40.66 2.66
2034 2991 4.989168 GGAACGAGTGACAACTTATCAGTT 59.011 41.667 0.00 0.00 44.72 3.16
2035 2992 4.281182 AGGAACGAGTGACAACTTATCAGT 59.719 41.667 0.00 0.00 36.52 3.41
2036 2993 4.810790 AGGAACGAGTGACAACTTATCAG 58.189 43.478 0.00 0.00 36.52 2.90
2037 2994 4.866508 AGGAACGAGTGACAACTTATCA 57.133 40.909 0.00 0.00 36.52 2.15
2040 2999 5.300034 TGAAGTAGGAACGAGTGACAACTTA 59.700 40.000 0.00 0.00 36.52 2.24
2052 3011 3.368116 CCCAGGTAAGTGAAGTAGGAACG 60.368 52.174 0.00 0.00 0.00 3.95
2053 3012 3.619242 GCCCAGGTAAGTGAAGTAGGAAC 60.619 52.174 0.00 0.00 0.00 3.62
2056 3015 1.209747 GGCCCAGGTAAGTGAAGTAGG 59.790 57.143 0.00 0.00 0.00 3.18
2074 3036 4.137543 CTGATAACTGGGAGTATTTGGGC 58.862 47.826 0.00 0.00 0.00 5.36
2112 3076 9.891828 TTGTGACAAAAATACAAGTCATGATAC 57.108 29.630 0.00 0.00 42.28 2.24
2128 3092 6.162079 TCTTTCAGTGCAATTTGTGACAAAA 58.838 32.000 15.31 0.00 0.00 2.44
2130 3094 5.321959 TCTTTCAGTGCAATTTGTGACAA 57.678 34.783 0.00 0.00 0.00 3.18
2143 3115 7.655328 ACAGTTCTCTCATACTTTCTTTCAGTG 59.345 37.037 0.00 0.00 0.00 3.66
2161 3150 7.965045 AGACTTTATCGCATTTAACAGTTCTC 58.035 34.615 0.00 0.00 0.00 2.87
2162 3151 7.602644 TGAGACTTTATCGCATTTAACAGTTCT 59.397 33.333 0.00 0.00 31.35 3.01
2185 3190 7.558161 TGGCTGTGACTGAAATATTTATGAG 57.442 36.000 0.00 0.73 0.00 2.90
2189 3194 8.801299 TGATTTTGGCTGTGACTGAAATATTTA 58.199 29.630 0.00 0.00 0.00 1.40
2197 3202 2.880268 CAGTGATTTTGGCTGTGACTGA 59.120 45.455 0.00 0.00 32.78 3.41
2201 3206 5.068855 TGAAATTCAGTGATTTTGGCTGTGA 59.931 36.000 15.77 0.00 29.75 3.58
2218 3223 9.868389 GAATGAAAACCAAAATCACTGAAATTC 57.132 29.630 0.00 0.00 0.00 2.17
2228 3233 3.000041 GGCCGGAATGAAAACCAAAATC 59.000 45.455 5.05 0.00 0.00 2.17
2247 3252 8.232913 TCAAGTTATAATTATGGTCCTTTGGC 57.767 34.615 8.28 0.00 0.00 4.52
2266 3283 6.868339 GGTTGGATTTCAATCGAATTCAAGTT 59.132 34.615 6.22 0.00 33.75 2.66
2311 3328 4.789012 TTTCAGCCACCAAATGATCTTC 57.211 40.909 0.00 0.00 0.00 2.87
2314 3331 6.921857 CAGAATATTTCAGCCACCAAATGATC 59.078 38.462 0.00 0.00 0.00 2.92
2315 3332 6.608405 TCAGAATATTTCAGCCACCAAATGAT 59.392 34.615 0.00 0.00 0.00 2.45
2323 3340 5.643379 TTTGGTCAGAATATTTCAGCCAC 57.357 39.130 0.00 0.00 0.00 5.01
2337 3374 5.920273 ACTGAAATAATTGCGTTTTGGTCAG 59.080 36.000 0.00 0.00 0.00 3.51
2396 3490 3.562567 ACAAGCGACAGAGAACTAGTC 57.437 47.619 0.00 0.00 0.00 2.59
2404 3498 0.320247 AGGCAGAACAAGCGACAGAG 60.320 55.000 0.00 0.00 0.00 3.35
2411 3650 0.886563 AATGAGCAGGCAGAACAAGC 59.113 50.000 0.00 0.00 0.00 4.01
2432 3672 5.174579 GCATGAGAGCAAAAACAAGAAGAAC 59.825 40.000 0.00 0.00 0.00 3.01
2444 3687 1.100510 GGCATCTGCATGAGAGCAAA 58.899 50.000 0.00 0.00 45.13 3.68
2450 3693 0.461516 AGTGACGGCATCTGCATGAG 60.462 55.000 0.00 0.00 44.36 2.90
2505 3748 2.472909 GGTGCCGTAATGCTGGAGC 61.473 63.158 0.00 0.00 42.50 4.70
2586 3829 5.508994 CCAGTAGATGATATTGTACACGCCA 60.509 44.000 0.00 0.00 0.00 5.69
2821 4065 3.277715 GCTTCAGATCCTGGAAAGAAGG 58.722 50.000 24.74 14.10 34.57 3.46
2893 4137 7.284489 TGAACTAGTTGCTGAAATTAACCTGTT 59.716 33.333 14.14 0.00 0.00 3.16
2927 4171 6.237384 GCATGATGAGTTGAACAAAAATAGCG 60.237 38.462 0.00 0.00 0.00 4.26
3000 4245 1.880027 GCAGGGTACACCAAAGAAGTG 59.120 52.381 0.00 0.00 43.89 3.16
3170 4418 9.705103 ATCAATCAGGGAATTCTCATCTTTTAA 57.295 29.630 8.33 0.00 0.00 1.52
3194 4444 5.488645 TTTCGCCCGGTTTCTAATTAATC 57.511 39.130 0.00 0.00 0.00 1.75
3203 4453 2.253051 TCGGTTTTCGCCCGGTTTC 61.253 57.895 0.00 0.00 45.51 2.78
3209 4459 1.017701 CAGTAGGTCGGTTTTCGCCC 61.018 60.000 0.00 0.00 37.12 6.13
3392 4643 3.965539 GATCGCCAGCACCAGCACT 62.966 63.158 0.00 0.00 45.49 4.40
3473 4724 2.932194 AAGCAGCTCAGGGCCTGA 60.932 61.111 33.02 33.02 43.05 3.86
3596 4847 2.970324 TGCTTGGTGTCGCGGAAC 60.970 61.111 6.13 4.72 0.00 3.62
3743 4994 0.538516 AGTAGAGCGCCTCGATGGAT 60.539 55.000 2.29 0.00 38.35 3.41
4533 5790 4.069232 CTCCCTCGCCTCGCACAA 62.069 66.667 0.00 0.00 0.00 3.33
4625 5882 2.057137 AGTTGTAGCCGTACCCGATA 57.943 50.000 0.00 0.00 35.63 2.92
4706 5963 1.663379 CGTAGACCATGCCGACCTCA 61.663 60.000 0.00 0.00 0.00 3.86
4833 6090 9.944663 GCATATGATTTTTGCATTTCATCAAAT 57.055 25.926 6.97 0.00 36.40 2.32
4854 6112 4.602259 CACCCCGCGACCGCATAT 62.602 66.667 8.23 0.00 42.06 1.78
4879 6137 3.552273 GCTATCAGGCGGTCGATCTTTTA 60.552 47.826 0.00 0.00 0.00 1.52
4906 6300 4.022603 GCTAGCTCATATGGGAGAGATCA 58.977 47.826 6.82 0.00 37.05 2.92
4918 6312 0.539518 TTGTTGCCGGCTAGCTCATA 59.460 50.000 29.70 0.07 0.00 2.15
4945 6341 4.845580 CTGAGGGCCGAGCGCAAT 62.846 66.667 11.47 0.00 44.06 3.56
4951 6347 2.435586 CTGTTGCTGAGGGCCGAG 60.436 66.667 0.00 0.00 40.92 4.63
4961 6361 2.724520 CAACAAGGCTCCTGTTGCT 58.275 52.632 16.61 0.00 36.86 3.91
5008 6411 1.410153 CTGCAACAGAGGCCTTGTTTT 59.590 47.619 22.77 6.20 32.44 2.43
5030 6433 9.985730 GAATAATGGGATTTTCTTATGATTGCA 57.014 29.630 0.00 0.00 0.00 4.08
5034 6437 8.810041 GCCAGAATAATGGGATTTTCTTATGAT 58.190 33.333 0.00 0.00 40.97 2.45
5035 6438 7.233348 GGCCAGAATAATGGGATTTTCTTATGA 59.767 37.037 0.00 0.00 40.97 2.15
5036 6439 7.381323 GGCCAGAATAATGGGATTTTCTTATG 58.619 38.462 0.00 0.00 40.97 1.90
5037 6440 6.498303 GGGCCAGAATAATGGGATTTTCTTAT 59.502 38.462 4.39 0.00 40.97 1.73
5041 6444 4.226384 AGGGCCAGAATAATGGGATTTTC 58.774 43.478 6.18 0.00 40.97 2.29
5063 6466 0.595588 CACCGCACCTTTGTATGCAA 59.404 50.000 0.00 0.00 42.17 4.08
5065 6468 0.447801 CTCACCGCACCTTTGTATGC 59.552 55.000 0.00 0.00 38.52 3.14
5137 6540 9.859427 TGCAACTTAGATTATTTTGATCCTTTG 57.141 29.630 0.00 0.00 0.00 2.77
5165 6568 5.278808 CCTTGATTGACCATTGCATATCCTG 60.279 44.000 0.00 0.00 0.00 3.86
5170 6573 4.598022 TGTCCTTGATTGACCATTGCATA 58.402 39.130 0.00 0.00 31.60 3.14
5307 6711 4.653341 TGAGACAATTGGAACATTGGGTTT 59.347 37.500 10.83 0.00 40.63 3.27
5373 6777 2.432444 TGCATCGAAAACTTACCCCTG 58.568 47.619 0.00 0.00 0.00 4.45
5378 6782 7.623268 AAAATCAGTTGCATCGAAAACTTAC 57.377 32.000 8.35 0.00 34.41 2.34
5461 6865 7.167136 GCTCTTGATTTGATACATAAAAGCTGC 59.833 37.037 0.00 0.00 0.00 5.25
5535 6941 6.144854 CACGTATATTGCCATTGAATCCAAG 58.855 40.000 0.00 0.00 35.48 3.61
5570 6976 3.774766 ACATGTATGTGCCTCTACTCCAA 59.225 43.478 0.00 0.00 40.03 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.