Multiple sequence alignment - TraesCS2A01G106600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G106600 chr2A 100.000 4125 0 0 1 4125 58675266 58671142 0.000000e+00 7618.0
1 TraesCS2A01G106600 chr2A 90.373 509 42 6 3362 3868 710768250 710768753 0.000000e+00 662.0
2 TraesCS2A01G106600 chr2A 90.500 200 12 5 3867 4061 710768807 710769004 1.470000e-64 257.0
3 TraesCS2A01G106600 chr2A 90.741 54 4 1 4067 4120 457445422 457445370 2.060000e-08 71.3
4 TraesCS2A01G106600 chr2B 93.434 1584 84 11 1788 3357 92798899 92797322 0.000000e+00 2331.0
5 TraesCS2A01G106600 chr2B 86.115 1462 96 57 484 1888 92800270 92798859 0.000000e+00 1476.0
6 TraesCS2A01G106600 chr2B 89.941 507 44 6 3364 3868 103798296 103797795 0.000000e+00 647.0
7 TraesCS2A01G106600 chr2B 90.000 200 13 4 3867 4061 103797741 103797544 6.850000e-63 252.0
8 TraesCS2A01G106600 chr2D 92.875 1586 84 16 1788 3357 59552420 59550848 0.000000e+00 2276.0
9 TraesCS2A01G106600 chr2D 89.009 1483 94 30 435 1888 59553822 59552380 0.000000e+00 1772.0
10 TraesCS2A01G106600 chr2D 95.918 49 2 0 4068 4116 498672722 498672770 3.420000e-11 80.5
11 TraesCS2A01G106600 chr6B 99.738 763 2 0 3363 4125 565425318 565424556 0.000000e+00 1399.0
12 TraesCS2A01G106600 chr6B 88.333 60 7 0 4061 4120 130910783 130910842 5.720000e-09 73.1
13 TraesCS2A01G106600 chr1B 99.084 764 6 1 3363 4125 17773693 17772930 0.000000e+00 1371.0
14 TraesCS2A01G106600 chr1B 90.741 54 4 1 4067 4120 678774981 678774929 2.060000e-08 71.3
15 TraesCS2A01G106600 chr3B 88.133 691 66 9 1125 1808 740149722 740150403 0.000000e+00 808.0
16 TraesCS2A01G106600 chr5B 87.120 691 74 9 1125 1808 510440268 510440950 0.000000e+00 769.0
17 TraesCS2A01G106600 chr7B 87.702 496 49 6 1125 1616 511939427 511938940 5.980000e-158 568.0
18 TraesCS2A01G106600 chr7D 92.092 392 28 2 1 392 517354008 517353620 2.170000e-152 549.0
19 TraesCS2A01G106600 chr7D 91.071 392 35 0 1 392 571879267 571878876 7.850000e-147 531.0
20 TraesCS2A01G106600 chr7D 79.545 264 35 11 3612 3870 436460734 436460983 1.970000e-38 171.0
21 TraesCS2A01G106600 chr7D 89.231 65 6 1 4061 4125 436461409 436461472 3.420000e-11 80.5
22 TraesCS2A01G106600 chr5D 90.102 394 38 1 1 394 417046799 417046407 1.020000e-140 510.0
23 TraesCS2A01G106600 chr5D 90.051 392 39 0 1 392 487530830 487531221 3.680000e-140 508.0
24 TraesCS2A01G106600 chr5D 89.286 392 41 1 1 392 121342294 121341904 1.330000e-134 490.0
25 TraesCS2A01G106600 chr4D 89.055 402 38 3 1 402 434931016 434930621 1.030000e-135 494.0
26 TraesCS2A01G106600 chr5A 89.258 391 42 0 2 392 45275148 45275538 1.330000e-134 490.0
27 TraesCS2A01G106600 chr5A 90.741 54 4 1 4067 4120 310975212 310975160 2.060000e-08 71.3
28 TraesCS2A01G106600 chr1A 88.491 391 45 0 1 391 222215726 222216116 1.340000e-129 473.0
29 TraesCS2A01G106600 chr6D 88.491 391 41 2 2 392 276119720 276119334 1.740000e-128 470.0
30 TraesCS2A01G106600 chr3D 94.444 54 3 0 4067 4120 580902479 580902426 2.640000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G106600 chr2A 58671142 58675266 4124 True 7618.0 7618 100.0000 1 4125 1 chr2A.!!$R1 4124
1 TraesCS2A01G106600 chr2A 710768250 710769004 754 False 459.5 662 90.4365 3362 4061 2 chr2A.!!$F1 699
2 TraesCS2A01G106600 chr2B 92797322 92800270 2948 True 1903.5 2331 89.7745 484 3357 2 chr2B.!!$R1 2873
3 TraesCS2A01G106600 chr2B 103797544 103798296 752 True 449.5 647 89.9705 3364 4061 2 chr2B.!!$R2 697
4 TraesCS2A01G106600 chr2D 59550848 59553822 2974 True 2024.0 2276 90.9420 435 3357 2 chr2D.!!$R1 2922
5 TraesCS2A01G106600 chr6B 565424556 565425318 762 True 1399.0 1399 99.7380 3363 4125 1 chr6B.!!$R1 762
6 TraesCS2A01G106600 chr1B 17772930 17773693 763 True 1371.0 1371 99.0840 3363 4125 1 chr1B.!!$R1 762
7 TraesCS2A01G106600 chr3B 740149722 740150403 681 False 808.0 808 88.1330 1125 1808 1 chr3B.!!$F1 683
8 TraesCS2A01G106600 chr5B 510440268 510440950 682 False 769.0 769 87.1200 1125 1808 1 chr5B.!!$F1 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
753 758 0.036105 TTCCGTGTCATCATGCTGCT 60.036 50.0 0.00 0.0 0.00 4.24 F
1832 1901 0.164647 CGAAGGAAACGCTGAAGCTG 59.835 55.0 0.10 0.0 39.32 4.24 F
1840 1912 0.250038 ACGCTGAAGCTGCAGAAGAA 60.250 50.0 26.87 0.0 38.14 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 2188 0.038159 CCAAGACTTTCTCCGTCGCT 60.038 55.000 0.0 0.0 36.53 4.93 R
2803 2932 1.276138 ACGATGTCCATGCAGTGAGAA 59.724 47.619 0.0 0.0 0.00 2.87 R
3169 3299 2.443255 ACACAAGACATGGAAAGAGGGT 59.557 45.455 0.0 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.374565 GTGCATCAATTTGAGATAAGCTCT 57.625 37.500 5.21 0.00 44.27 4.09
24 25 7.488187 GTGCATCAATTTGAGATAAGCTCTA 57.512 36.000 5.21 0.00 44.27 2.43
25 26 7.351223 GTGCATCAATTTGAGATAAGCTCTAC 58.649 38.462 5.21 0.00 44.27 2.59
26 27 6.201615 TGCATCAATTTGAGATAAGCTCTACG 59.798 38.462 5.21 0.00 44.27 3.51
27 28 6.201806 GCATCAATTTGAGATAAGCTCTACGT 59.798 38.462 5.21 0.00 44.27 3.57
28 29 7.562412 CATCAATTTGAGATAAGCTCTACGTG 58.438 38.462 5.21 0.00 44.27 4.49
29 30 6.863275 TCAATTTGAGATAAGCTCTACGTGA 58.137 36.000 0.00 0.00 44.27 4.35
30 31 7.320399 TCAATTTGAGATAAGCTCTACGTGAA 58.680 34.615 0.00 0.00 44.27 3.18
31 32 7.817478 TCAATTTGAGATAAGCTCTACGTGAAA 59.183 33.333 0.00 0.00 44.27 2.69
32 33 8.443160 CAATTTGAGATAAGCTCTACGTGAAAA 58.557 33.333 0.00 0.00 44.27 2.29
33 34 7.956420 TTTGAGATAAGCTCTACGTGAAAAA 57.044 32.000 0.00 0.00 44.27 1.94
34 35 7.582435 TTGAGATAAGCTCTACGTGAAAAAG 57.418 36.000 0.00 0.00 44.27 2.27
35 36 6.920817 TGAGATAAGCTCTACGTGAAAAAGA 58.079 36.000 0.00 0.00 44.27 2.52
36 37 7.548097 TGAGATAAGCTCTACGTGAAAAAGAT 58.452 34.615 0.00 0.00 44.27 2.40
37 38 7.489435 TGAGATAAGCTCTACGTGAAAAAGATG 59.511 37.037 0.00 0.00 44.27 2.90
38 39 4.670227 AAGCTCTACGTGAAAAAGATGC 57.330 40.909 0.00 0.00 0.00 3.91
39 40 2.668457 AGCTCTACGTGAAAAAGATGCG 59.332 45.455 0.00 0.00 0.00 4.73
40 41 2.784665 GCTCTACGTGAAAAAGATGCGC 60.785 50.000 0.00 0.00 0.00 6.09
41 42 2.409012 TCTACGTGAAAAAGATGCGCA 58.591 42.857 14.96 14.96 0.00 6.09
42 43 3.000041 TCTACGTGAAAAAGATGCGCAT 59.000 40.909 25.66 25.66 0.00 4.73
43 44 2.247311 ACGTGAAAAAGATGCGCATC 57.753 45.000 37.29 37.29 38.09 3.91
44 45 1.174352 CGTGAAAAAGATGCGCATCG 58.826 50.000 37.09 23.51 42.48 3.84
45 46 1.201910 CGTGAAAAAGATGCGCATCGA 60.202 47.619 37.09 19.20 42.48 3.59
46 47 2.537529 CGTGAAAAAGATGCGCATCGAT 60.538 45.455 37.09 28.96 42.48 3.59
47 48 2.780014 GTGAAAAAGATGCGCATCGATG 59.220 45.455 37.09 21.27 42.48 3.84
48 49 2.419673 TGAAAAAGATGCGCATCGATGT 59.580 40.909 37.09 27.16 42.48 3.06
49 50 3.119884 TGAAAAAGATGCGCATCGATGTT 60.120 39.130 37.09 30.66 42.48 2.71
50 51 4.094146 TGAAAAAGATGCGCATCGATGTTA 59.906 37.500 37.09 22.20 42.48 2.41
51 52 4.818534 AAAAGATGCGCATCGATGTTAT 57.181 36.364 37.09 20.30 42.48 1.89
52 53 3.800929 AAGATGCGCATCGATGTTATG 57.199 42.857 37.09 14.33 42.48 1.90
53 54 2.071540 AGATGCGCATCGATGTTATGG 58.928 47.619 37.09 11.59 42.48 2.74
54 55 1.800586 GATGCGCATCGATGTTATGGT 59.199 47.619 32.60 2.28 0.00 3.55
55 56 1.662517 TGCGCATCGATGTTATGGTT 58.337 45.000 25.47 0.00 0.00 3.67
56 57 1.597195 TGCGCATCGATGTTATGGTTC 59.403 47.619 25.47 6.32 0.00 3.62
57 58 1.069906 GCGCATCGATGTTATGGTTCC 60.070 52.381 25.47 5.62 0.00 3.62
58 59 2.209273 CGCATCGATGTTATGGTTCCA 58.791 47.619 25.47 0.00 0.00 3.53
59 60 2.611751 CGCATCGATGTTATGGTTCCAA 59.388 45.455 25.47 0.00 0.00 3.53
60 61 3.250762 CGCATCGATGTTATGGTTCCAAT 59.749 43.478 25.47 0.00 0.00 3.16
61 62 4.261155 CGCATCGATGTTATGGTTCCAATT 60.261 41.667 25.47 0.00 0.00 2.32
62 63 5.591099 GCATCGATGTTATGGTTCCAATTT 58.409 37.500 25.47 0.00 0.00 1.82
63 64 6.042143 GCATCGATGTTATGGTTCCAATTTT 58.958 36.000 25.47 0.00 0.00 1.82
64 65 6.019640 GCATCGATGTTATGGTTCCAATTTTG 60.020 38.462 25.47 0.00 0.00 2.44
65 66 6.582677 TCGATGTTATGGTTCCAATTTTGT 57.417 33.333 0.00 0.00 0.00 2.83
66 67 6.385843 TCGATGTTATGGTTCCAATTTTGTG 58.614 36.000 0.00 0.00 0.00 3.33
67 68 6.207614 TCGATGTTATGGTTCCAATTTTGTGA 59.792 34.615 0.00 0.00 0.00 3.58
68 69 7.035004 CGATGTTATGGTTCCAATTTTGTGAT 58.965 34.615 0.00 0.00 0.00 3.06
69 70 7.220683 CGATGTTATGGTTCCAATTTTGTGATC 59.779 37.037 0.00 0.00 0.00 2.92
70 71 7.295322 TGTTATGGTTCCAATTTTGTGATCA 57.705 32.000 0.00 0.00 0.00 2.92
71 72 7.377398 TGTTATGGTTCCAATTTTGTGATCAG 58.623 34.615 0.00 0.00 0.00 2.90
72 73 7.015098 TGTTATGGTTCCAATTTTGTGATCAGT 59.985 33.333 0.00 0.00 0.00 3.41
73 74 5.867903 TGGTTCCAATTTTGTGATCAGTT 57.132 34.783 0.00 0.00 0.00 3.16
74 75 5.841810 TGGTTCCAATTTTGTGATCAGTTC 58.158 37.500 0.00 0.00 0.00 3.01
75 76 5.362143 TGGTTCCAATTTTGTGATCAGTTCA 59.638 36.000 0.00 0.00 0.00 3.18
76 77 6.041865 TGGTTCCAATTTTGTGATCAGTTCAT 59.958 34.615 0.00 0.00 36.54 2.57
77 78 7.232330 TGGTTCCAATTTTGTGATCAGTTCATA 59.768 33.333 0.00 0.00 36.54 2.15
78 79 7.756722 GGTTCCAATTTTGTGATCAGTTCATAG 59.243 37.037 0.00 0.00 36.54 2.23
79 80 8.299570 GTTCCAATTTTGTGATCAGTTCATAGT 58.700 33.333 0.00 0.00 36.54 2.12
80 81 8.408043 TCCAATTTTGTGATCAGTTCATAGTT 57.592 30.769 0.00 0.00 36.54 2.24
81 82 8.859090 TCCAATTTTGTGATCAGTTCATAGTTT 58.141 29.630 0.00 0.00 36.54 2.66
82 83 9.132521 CCAATTTTGTGATCAGTTCATAGTTTC 57.867 33.333 0.00 0.00 36.54 2.78
83 84 9.681692 CAATTTTGTGATCAGTTCATAGTTTCA 57.318 29.630 0.00 0.00 36.54 2.69
86 87 6.892310 TGTGATCAGTTCATAGTTTCATCG 57.108 37.500 0.00 0.00 36.54 3.84
87 88 6.630071 TGTGATCAGTTCATAGTTTCATCGA 58.370 36.000 0.00 0.00 36.54 3.59
88 89 6.531594 TGTGATCAGTTCATAGTTTCATCGAC 59.468 38.462 0.00 0.00 36.54 4.20
89 90 6.019479 GTGATCAGTTCATAGTTTCATCGACC 60.019 42.308 0.00 0.00 36.54 4.79
90 91 4.421058 TCAGTTCATAGTTTCATCGACCG 58.579 43.478 0.00 0.00 0.00 4.79
91 92 4.082408 TCAGTTCATAGTTTCATCGACCGT 60.082 41.667 0.00 0.00 0.00 4.83
92 93 5.124297 TCAGTTCATAGTTTCATCGACCGTA 59.876 40.000 0.00 0.00 0.00 4.02
93 94 5.803461 CAGTTCATAGTTTCATCGACCGTAA 59.197 40.000 0.00 0.00 0.00 3.18
94 95 6.309494 CAGTTCATAGTTTCATCGACCGTAAA 59.691 38.462 0.00 0.00 0.00 2.01
95 96 7.010183 CAGTTCATAGTTTCATCGACCGTAAAT 59.990 37.037 0.00 0.00 0.00 1.40
96 97 6.822073 TCATAGTTTCATCGACCGTAAATG 57.178 37.500 0.00 0.00 0.00 2.32
97 98 6.334989 TCATAGTTTCATCGACCGTAAATGT 58.665 36.000 0.00 0.00 0.00 2.71
98 99 6.814644 TCATAGTTTCATCGACCGTAAATGTT 59.185 34.615 0.00 0.00 0.00 2.71
99 100 5.934935 AGTTTCATCGACCGTAAATGTTT 57.065 34.783 0.00 0.00 0.00 2.83
100 101 8.597227 CATAGTTTCATCGACCGTAAATGTTTA 58.403 33.333 0.00 0.00 0.00 2.01
101 102 7.424227 AGTTTCATCGACCGTAAATGTTTAA 57.576 32.000 0.00 0.00 0.00 1.52
102 103 8.036273 AGTTTCATCGACCGTAAATGTTTAAT 57.964 30.769 0.00 0.00 0.00 1.40
103 104 8.508875 AGTTTCATCGACCGTAAATGTTTAATT 58.491 29.630 0.00 0.00 0.00 1.40
104 105 9.120422 GTTTCATCGACCGTAAATGTTTAATTT 57.880 29.630 0.00 0.00 0.00 1.82
105 106 8.883789 TTCATCGACCGTAAATGTTTAATTTC 57.116 30.769 0.00 0.00 0.00 2.17
106 107 7.174746 TCATCGACCGTAAATGTTTAATTTCG 58.825 34.615 0.00 0.00 0.00 3.46
107 108 6.464895 TCGACCGTAAATGTTTAATTTCGT 57.535 33.333 0.00 0.00 0.00 3.85
108 109 6.298103 TCGACCGTAAATGTTTAATTTCGTG 58.702 36.000 0.00 0.00 0.00 4.35
109 110 6.072733 CGACCGTAAATGTTTAATTTCGTGT 58.927 36.000 0.00 0.00 0.00 4.49
110 111 6.574462 CGACCGTAAATGTTTAATTTCGTGTT 59.426 34.615 0.00 0.00 0.00 3.32
111 112 7.201091 CGACCGTAAATGTTTAATTTCGTGTTC 60.201 37.037 0.00 0.00 0.00 3.18
112 113 7.416022 ACCGTAAATGTTTAATTTCGTGTTCA 58.584 30.769 0.00 0.00 0.00 3.18
113 114 8.077386 ACCGTAAATGTTTAATTTCGTGTTCAT 58.923 29.630 0.00 0.00 0.00 2.57
114 115 8.362304 CCGTAAATGTTTAATTTCGTGTTCATG 58.638 33.333 0.00 0.00 0.00 3.07
115 116 8.897809 CGTAAATGTTTAATTTCGTGTTCATGT 58.102 29.630 0.00 0.00 0.00 3.21
121 122 9.658475 TGTTTAATTTCGTGTTCATGTTTAGAG 57.342 29.630 0.00 0.00 0.00 2.43
122 123 8.627428 GTTTAATTTCGTGTTCATGTTTAGAGC 58.373 33.333 0.00 0.00 0.00 4.09
123 124 6.560253 AATTTCGTGTTCATGTTTAGAGCT 57.440 33.333 0.00 0.00 0.00 4.09
124 125 7.667043 AATTTCGTGTTCATGTTTAGAGCTA 57.333 32.000 0.00 0.00 0.00 3.32
125 126 7.849804 ATTTCGTGTTCATGTTTAGAGCTAT 57.150 32.000 0.00 0.00 0.00 2.97
126 127 7.667043 TTTCGTGTTCATGTTTAGAGCTATT 57.333 32.000 0.00 0.00 0.00 1.73
127 128 7.667043 TTCGTGTTCATGTTTAGAGCTATTT 57.333 32.000 0.00 0.00 0.00 1.40
128 129 7.667043 TCGTGTTCATGTTTAGAGCTATTTT 57.333 32.000 0.00 0.00 0.00 1.82
129 130 7.518161 TCGTGTTCATGTTTAGAGCTATTTTG 58.482 34.615 0.00 0.00 0.00 2.44
130 131 6.742718 CGTGTTCATGTTTAGAGCTATTTTGG 59.257 38.462 0.00 0.00 0.00 3.28
131 132 7.360861 CGTGTTCATGTTTAGAGCTATTTTGGA 60.361 37.037 0.00 0.00 0.00 3.53
132 133 8.462016 GTGTTCATGTTTAGAGCTATTTTGGAT 58.538 33.333 0.00 0.00 0.00 3.41
133 134 8.461222 TGTTCATGTTTAGAGCTATTTTGGATG 58.539 33.333 0.00 0.00 0.00 3.51
134 135 8.677300 GTTCATGTTTAGAGCTATTTTGGATGA 58.323 33.333 0.00 0.00 0.00 2.92
135 136 8.806429 TCATGTTTAGAGCTATTTTGGATGAA 57.194 30.769 0.00 0.00 0.00 2.57
136 137 9.412460 TCATGTTTAGAGCTATTTTGGATGAAT 57.588 29.630 0.00 0.00 0.00 2.57
143 144 8.125978 AGAGCTATTTTGGATGAATTTTGTCA 57.874 30.769 0.00 0.00 0.00 3.58
144 145 8.587608 AGAGCTATTTTGGATGAATTTTGTCAA 58.412 29.630 0.00 0.00 0.00 3.18
145 146 9.206870 GAGCTATTTTGGATGAATTTTGTCAAA 57.793 29.630 0.00 0.00 0.00 2.69
146 147 9.729281 AGCTATTTTGGATGAATTTTGTCAAAT 57.271 25.926 0.00 0.00 33.72 2.32
155 156 4.566659 AATTTTGTCAAATTCATCGCGC 57.433 36.364 0.00 0.00 38.02 6.86
156 157 2.695613 TTTGTCAAATTCATCGCGCA 57.304 40.000 8.75 0.00 0.00 6.09
157 158 1.962412 TTGTCAAATTCATCGCGCAC 58.038 45.000 8.75 0.00 0.00 5.34
158 159 0.871057 TGTCAAATTCATCGCGCACA 59.129 45.000 8.75 0.00 0.00 4.57
159 160 1.136000 TGTCAAATTCATCGCGCACAG 60.136 47.619 8.75 0.00 0.00 3.66
160 161 0.179192 TCAAATTCATCGCGCACAGC 60.179 50.000 8.75 0.00 43.95 4.40
161 162 0.179181 CAAATTCATCGCGCACAGCT 60.179 50.000 8.75 0.00 45.59 4.24
162 163 0.179181 AAATTCATCGCGCACAGCTG 60.179 50.000 13.48 13.48 45.59 4.24
163 164 1.020861 AATTCATCGCGCACAGCTGA 61.021 50.000 23.35 0.00 45.59 4.26
164 165 1.699656 ATTCATCGCGCACAGCTGAC 61.700 55.000 23.35 11.17 45.59 3.51
165 166 3.857854 CATCGCGCACAGCTGACC 61.858 66.667 23.35 9.52 45.59 4.02
169 170 4.077188 GCGCACAGCTGACCGTTC 62.077 66.667 23.35 6.67 44.04 3.95
170 171 3.767230 CGCACAGCTGACCGTTCG 61.767 66.667 23.35 9.82 0.00 3.95
171 172 2.355837 GCACAGCTGACCGTTCGA 60.356 61.111 23.35 0.00 0.00 3.71
172 173 1.954146 GCACAGCTGACCGTTCGAA 60.954 57.895 23.35 0.00 0.00 3.71
173 174 1.291877 GCACAGCTGACCGTTCGAAT 61.292 55.000 23.35 0.00 0.00 3.34
174 175 1.148310 CACAGCTGACCGTTCGAATT 58.852 50.000 23.35 0.00 0.00 2.17
175 176 1.126846 CACAGCTGACCGTTCGAATTC 59.873 52.381 23.35 0.00 0.00 2.17
176 177 1.000955 ACAGCTGACCGTTCGAATTCT 59.999 47.619 23.35 0.00 0.00 2.40
177 178 1.656095 CAGCTGACCGTTCGAATTCTC 59.344 52.381 8.42 0.00 0.00 2.87
178 179 1.000145 GCTGACCGTTCGAATTCTCC 59.000 55.000 0.00 0.00 0.00 3.71
179 180 1.404315 GCTGACCGTTCGAATTCTCCT 60.404 52.381 0.00 0.00 0.00 3.69
180 181 2.931320 GCTGACCGTTCGAATTCTCCTT 60.931 50.000 0.00 0.00 0.00 3.36
181 182 3.326747 CTGACCGTTCGAATTCTCCTTT 58.673 45.455 0.00 0.00 0.00 3.11
182 183 3.064207 TGACCGTTCGAATTCTCCTTTG 58.936 45.455 0.00 0.00 0.00 2.77
183 184 3.243941 TGACCGTTCGAATTCTCCTTTGA 60.244 43.478 0.00 0.00 0.00 2.69
184 185 3.933332 GACCGTTCGAATTCTCCTTTGAT 59.067 43.478 0.00 0.00 0.00 2.57
185 186 3.933332 ACCGTTCGAATTCTCCTTTGATC 59.067 43.478 0.00 0.00 0.00 2.92
186 187 3.932710 CCGTTCGAATTCTCCTTTGATCA 59.067 43.478 0.00 0.00 0.00 2.92
187 188 4.033358 CCGTTCGAATTCTCCTTTGATCAG 59.967 45.833 0.00 0.00 0.00 2.90
188 189 4.627467 CGTTCGAATTCTCCTTTGATCAGT 59.373 41.667 0.00 0.00 0.00 3.41
189 190 5.805486 CGTTCGAATTCTCCTTTGATCAGTA 59.195 40.000 0.00 0.00 0.00 2.74
190 191 6.020281 CGTTCGAATTCTCCTTTGATCAGTAG 60.020 42.308 0.00 0.00 0.00 2.57
191 192 5.352284 TCGAATTCTCCTTTGATCAGTAGC 58.648 41.667 3.52 0.00 0.00 3.58
192 193 5.127845 TCGAATTCTCCTTTGATCAGTAGCT 59.872 40.000 3.52 0.00 0.00 3.32
193 194 5.814705 CGAATTCTCCTTTGATCAGTAGCTT 59.185 40.000 3.52 0.00 0.00 3.74
194 195 6.019156 CGAATTCTCCTTTGATCAGTAGCTTC 60.019 42.308 3.52 0.00 0.00 3.86
195 196 5.745312 TTCTCCTTTGATCAGTAGCTTCA 57.255 39.130 0.00 0.00 0.00 3.02
196 197 5.078411 TCTCCTTTGATCAGTAGCTTCAC 57.922 43.478 0.00 0.00 0.00 3.18
197 198 4.081420 TCTCCTTTGATCAGTAGCTTCACC 60.081 45.833 0.00 0.00 0.00 4.02
198 199 3.840666 TCCTTTGATCAGTAGCTTCACCT 59.159 43.478 0.00 0.00 0.00 4.00
199 200 4.287067 TCCTTTGATCAGTAGCTTCACCTT 59.713 41.667 0.00 0.00 0.00 3.50
200 201 5.483937 TCCTTTGATCAGTAGCTTCACCTTA 59.516 40.000 0.00 0.00 0.00 2.69
201 202 5.582665 CCTTTGATCAGTAGCTTCACCTTAC 59.417 44.000 0.00 0.00 0.00 2.34
202 203 5.738619 TTGATCAGTAGCTTCACCTTACA 57.261 39.130 0.00 0.00 0.00 2.41
203 204 5.330455 TGATCAGTAGCTTCACCTTACAG 57.670 43.478 0.00 0.00 0.00 2.74
204 205 4.772624 TGATCAGTAGCTTCACCTTACAGT 59.227 41.667 0.00 0.00 0.00 3.55
205 206 5.246203 TGATCAGTAGCTTCACCTTACAGTT 59.754 40.000 0.00 0.00 0.00 3.16
206 207 5.546621 TCAGTAGCTTCACCTTACAGTTT 57.453 39.130 0.00 0.00 0.00 2.66
207 208 5.539048 TCAGTAGCTTCACCTTACAGTTTC 58.461 41.667 0.00 0.00 0.00 2.78
208 209 5.069914 TCAGTAGCTTCACCTTACAGTTTCA 59.930 40.000 0.00 0.00 0.00 2.69
209 210 5.177696 CAGTAGCTTCACCTTACAGTTTCAC 59.822 44.000 0.00 0.00 0.00 3.18
210 211 4.150897 AGCTTCACCTTACAGTTTCACA 57.849 40.909 0.00 0.00 0.00 3.58
211 212 4.718961 AGCTTCACCTTACAGTTTCACAT 58.281 39.130 0.00 0.00 0.00 3.21
212 213 4.516698 AGCTTCACCTTACAGTTTCACATG 59.483 41.667 0.00 0.00 0.00 3.21
213 214 4.515191 GCTTCACCTTACAGTTTCACATGA 59.485 41.667 0.00 0.00 0.00 3.07
214 215 5.182001 GCTTCACCTTACAGTTTCACATGAT 59.818 40.000 0.00 0.00 0.00 2.45
215 216 6.294176 GCTTCACCTTACAGTTTCACATGATT 60.294 38.462 0.00 0.00 0.00 2.57
216 217 7.581213 TTCACCTTACAGTTTCACATGATTT 57.419 32.000 0.00 0.00 0.00 2.17
217 218 7.581213 TCACCTTACAGTTTCACATGATTTT 57.419 32.000 0.00 0.00 0.00 1.82
218 219 8.006298 TCACCTTACAGTTTCACATGATTTTT 57.994 30.769 0.00 0.00 0.00 1.94
219 220 7.920151 TCACCTTACAGTTTCACATGATTTTTG 59.080 33.333 0.00 0.00 0.00 2.44
220 221 7.706179 CACCTTACAGTTTCACATGATTTTTGT 59.294 33.333 0.00 0.00 0.00 2.83
221 222 7.706179 ACCTTACAGTTTCACATGATTTTTGTG 59.294 33.333 0.00 0.00 44.62 3.33
222 223 7.706179 CCTTACAGTTTCACATGATTTTTGTGT 59.294 33.333 0.00 0.00 43.86 3.72
223 224 8.994429 TTACAGTTTCACATGATTTTTGTGTT 57.006 26.923 0.00 0.00 43.86 3.32
224 225 7.293402 ACAGTTTCACATGATTTTTGTGTTG 57.707 32.000 0.00 2.71 43.86 3.33
225 226 6.183360 ACAGTTTCACATGATTTTTGTGTTGC 60.183 34.615 0.00 0.00 43.86 4.17
226 227 5.873712 AGTTTCACATGATTTTTGTGTTGCA 59.126 32.000 0.00 0.00 43.86 4.08
227 228 5.715429 TTCACATGATTTTTGTGTTGCAC 57.285 34.783 0.00 0.00 43.86 4.57
228 229 4.752146 TCACATGATTTTTGTGTTGCACA 58.248 34.783 0.00 0.00 43.86 4.57
229 230 5.358090 TCACATGATTTTTGTGTTGCACAT 58.642 33.333 0.00 0.00 44.16 3.21
230 231 5.816258 TCACATGATTTTTGTGTTGCACATT 59.184 32.000 0.00 0.00 44.16 2.71
231 232 6.315642 TCACATGATTTTTGTGTTGCACATTT 59.684 30.769 0.00 0.00 44.16 2.32
232 233 6.967767 CACATGATTTTTGTGTTGCACATTTT 59.032 30.769 0.00 0.00 44.16 1.82
233 234 8.121086 CACATGATTTTTGTGTTGCACATTTTA 58.879 29.630 0.00 0.00 44.16 1.52
234 235 8.838365 ACATGATTTTTGTGTTGCACATTTTAT 58.162 25.926 0.00 0.00 44.16 1.40
235 236 9.108449 CATGATTTTTGTGTTGCACATTTTATG 57.892 29.630 2.65 1.59 44.16 1.90
236 237 8.206325 TGATTTTTGTGTTGCACATTTTATGT 57.794 26.923 2.65 0.00 44.16 2.29
237 238 8.671921 TGATTTTTGTGTTGCACATTTTATGTT 58.328 25.926 2.65 0.00 44.16 2.71
238 239 8.838452 ATTTTTGTGTTGCACATTTTATGTTG 57.162 26.923 2.65 0.00 44.16 3.33
239 240 5.401033 TTGTGTTGCACATTTTATGTTGC 57.599 34.783 2.65 0.00 44.16 4.17
240 241 3.488678 TGTGTTGCACATTTTATGTTGCG 59.511 39.130 0.00 0.00 42.70 4.85
241 242 3.733224 GTGTTGCACATTTTATGTTGCGA 59.267 39.130 0.00 0.00 42.70 5.10
242 243 3.733224 TGTTGCACATTTTATGTTGCGAC 59.267 39.130 17.87 17.87 42.70 5.19
243 244 2.579541 TGCACATTTTATGTTGCGACG 58.420 42.857 0.00 0.00 42.70 5.12
244 245 2.224314 TGCACATTTTATGTTGCGACGA 59.776 40.909 0.00 0.00 42.70 4.20
245 246 3.120025 TGCACATTTTATGTTGCGACGAT 60.120 39.130 0.00 0.00 42.70 3.73
246 247 3.478516 GCACATTTTATGTTGCGACGATC 59.521 43.478 0.00 0.00 42.70 3.69
247 248 3.714016 CACATTTTATGTTGCGACGATCG 59.286 43.478 14.88 14.88 42.70 3.69
248 249 3.369756 ACATTTTATGTTGCGACGATCGT 59.630 39.130 22.97 22.97 41.63 3.73
249 250 4.563580 ACATTTTATGTTGCGACGATCGTA 59.436 37.500 22.79 4.40 41.63 3.43
250 251 4.748503 TTTTATGTTGCGACGATCGTAG 57.251 40.909 22.79 22.41 42.81 3.51
251 252 3.678915 TTATGTTGCGACGATCGTAGA 57.321 42.857 29.07 10.15 42.81 2.59
252 253 1.823828 ATGTTGCGACGATCGTAGAC 58.176 50.000 29.07 19.66 42.51 2.59
253 254 0.519792 TGTTGCGACGATCGTAGACG 60.520 55.000 29.07 24.19 42.51 4.18
266 267 3.865329 TCGTAGACGATTAAATCCGACG 58.135 45.455 0.00 0.00 44.22 5.12
267 268 3.309682 TCGTAGACGATTAAATCCGACGT 59.690 43.478 0.00 0.00 44.22 4.34
271 272 4.672821 GACGATTAAATCCGACGTCTTC 57.327 45.455 14.70 0.00 46.00 2.87
272 273 3.442100 ACGATTAAATCCGACGTCTTCC 58.558 45.455 14.70 0.00 31.69 3.46
273 274 3.129988 ACGATTAAATCCGACGTCTTCCT 59.870 43.478 14.70 0.00 31.69 3.36
274 275 3.729716 CGATTAAATCCGACGTCTTCCTC 59.270 47.826 14.70 1.33 0.00 3.71
275 276 2.838386 TAAATCCGACGTCTTCCTCG 57.162 50.000 14.70 0.00 0.00 4.63
276 277 0.886563 AAATCCGACGTCTTCCTCGT 59.113 50.000 14.70 0.00 44.27 4.18
277 278 0.170561 AATCCGACGTCTTCCTCGTG 59.829 55.000 14.70 0.00 41.64 4.35
278 279 0.675837 ATCCGACGTCTTCCTCGTGA 60.676 55.000 14.70 0.37 41.64 4.35
279 280 0.886043 TCCGACGTCTTCCTCGTGAA 60.886 55.000 14.70 0.00 41.64 3.18
294 295 9.242477 CTTCCTCGTGAAGTATATATGCATATG 57.758 37.037 26.21 8.66 44.59 1.78
295 296 8.293699 TCCTCGTGAAGTATATATGCATATGT 57.706 34.615 26.21 22.26 0.00 2.29
296 297 8.190784 TCCTCGTGAAGTATATATGCATATGTG 58.809 37.037 26.21 8.51 0.00 3.21
297 298 7.976175 CCTCGTGAAGTATATATGCATATGTGT 59.024 37.037 26.21 15.32 0.00 3.72
298 299 8.687824 TCGTGAAGTATATATGCATATGTGTG 57.312 34.615 26.21 8.62 0.00 3.82
299 300 8.519526 TCGTGAAGTATATATGCATATGTGTGA 58.480 33.333 26.21 8.83 0.00 3.58
300 301 9.305925 CGTGAAGTATATATGCATATGTGTGAT 57.694 33.333 26.21 14.90 0.00 3.06
311 312 8.637281 ATGCATATGTGTGATTTGTGTTAATG 57.363 30.769 0.00 0.00 0.00 1.90
312 313 7.824672 TGCATATGTGTGATTTGTGTTAATGA 58.175 30.769 4.29 0.00 0.00 2.57
313 314 7.754475 TGCATATGTGTGATTTGTGTTAATGAC 59.246 33.333 4.29 0.00 0.00 3.06
314 315 7.754475 GCATATGTGTGATTTGTGTTAATGACA 59.246 33.333 4.29 0.00 30.77 3.58
327 328 5.168569 TGTTAATGACACTCCTTAAGCTCG 58.831 41.667 0.00 0.00 32.00 5.03
328 329 2.969628 ATGACACTCCTTAAGCTCGG 57.030 50.000 0.00 0.00 0.00 4.63
329 330 1.629043 TGACACTCCTTAAGCTCGGT 58.371 50.000 0.00 0.00 0.00 4.69
330 331 1.544691 TGACACTCCTTAAGCTCGGTC 59.455 52.381 0.00 3.17 0.00 4.79
331 332 1.819903 GACACTCCTTAAGCTCGGTCT 59.180 52.381 0.00 0.00 0.00 3.85
332 333 1.819903 ACACTCCTTAAGCTCGGTCTC 59.180 52.381 0.00 0.00 0.00 3.36
333 334 2.096248 CACTCCTTAAGCTCGGTCTCT 58.904 52.381 0.00 0.00 0.00 3.10
334 335 2.494073 CACTCCTTAAGCTCGGTCTCTT 59.506 50.000 0.00 0.00 0.00 2.85
335 336 2.756207 ACTCCTTAAGCTCGGTCTCTTC 59.244 50.000 0.00 0.00 0.00 2.87
336 337 3.020984 CTCCTTAAGCTCGGTCTCTTCT 58.979 50.000 0.00 0.00 0.00 2.85
337 338 3.018149 TCCTTAAGCTCGGTCTCTTCTC 58.982 50.000 0.00 0.00 0.00 2.87
338 339 2.100087 CCTTAAGCTCGGTCTCTTCTCC 59.900 54.545 0.00 0.00 0.00 3.71
339 340 2.810870 TAAGCTCGGTCTCTTCTCCT 57.189 50.000 0.00 0.00 0.00 3.69
340 341 1.470051 AAGCTCGGTCTCTTCTCCTC 58.530 55.000 0.00 0.00 0.00 3.71
341 342 0.623723 AGCTCGGTCTCTTCTCCTCT 59.376 55.000 0.00 0.00 0.00 3.69
342 343 1.005450 AGCTCGGTCTCTTCTCCTCTT 59.995 52.381 0.00 0.00 0.00 2.85
343 344 1.822371 GCTCGGTCTCTTCTCCTCTTT 59.178 52.381 0.00 0.00 0.00 2.52
344 345 2.232696 GCTCGGTCTCTTCTCCTCTTTT 59.767 50.000 0.00 0.00 0.00 2.27
345 346 3.674955 GCTCGGTCTCTTCTCCTCTTTTC 60.675 52.174 0.00 0.00 0.00 2.29
346 347 3.761752 CTCGGTCTCTTCTCCTCTTTTCT 59.238 47.826 0.00 0.00 0.00 2.52
347 348 3.508012 TCGGTCTCTTCTCCTCTTTTCTG 59.492 47.826 0.00 0.00 0.00 3.02
348 349 3.595173 GGTCTCTTCTCCTCTTTTCTGC 58.405 50.000 0.00 0.00 0.00 4.26
349 350 3.260632 GGTCTCTTCTCCTCTTTTCTGCT 59.739 47.826 0.00 0.00 0.00 4.24
350 351 4.494484 GTCTCTTCTCCTCTTTTCTGCTC 58.506 47.826 0.00 0.00 0.00 4.26
351 352 3.513515 TCTCTTCTCCTCTTTTCTGCTCC 59.486 47.826 0.00 0.00 0.00 4.70
352 353 3.242867 TCTTCTCCTCTTTTCTGCTCCA 58.757 45.455 0.00 0.00 0.00 3.86
353 354 3.007398 TCTTCTCCTCTTTTCTGCTCCAC 59.993 47.826 0.00 0.00 0.00 4.02
354 355 1.625818 TCTCCTCTTTTCTGCTCCACC 59.374 52.381 0.00 0.00 0.00 4.61
355 356 0.321671 TCCTCTTTTCTGCTCCACCG 59.678 55.000 0.00 0.00 0.00 4.94
356 357 0.674895 CCTCTTTTCTGCTCCACCGG 60.675 60.000 0.00 0.00 0.00 5.28
357 358 1.301677 CTCTTTTCTGCTCCACCGGC 61.302 60.000 0.00 0.00 0.00 6.13
358 359 2.668212 TTTTCTGCTCCACCGGCG 60.668 61.111 0.00 0.00 0.00 6.46
359 360 3.469863 TTTTCTGCTCCACCGGCGT 62.470 57.895 6.01 0.00 0.00 5.68
360 361 3.876589 TTTCTGCTCCACCGGCGTC 62.877 63.158 6.01 0.00 0.00 5.19
387 388 3.894947 GTCGCTCCTCTCGGCCTC 61.895 72.222 0.00 0.00 0.00 4.70
390 391 3.223589 GCTCCTCTCGGCCTCCTC 61.224 72.222 0.00 0.00 0.00 3.71
391 392 2.600731 CTCCTCTCGGCCTCCTCT 59.399 66.667 0.00 0.00 0.00 3.69
392 393 1.076339 CTCCTCTCGGCCTCCTCTT 60.076 63.158 0.00 0.00 0.00 2.85
393 394 1.076632 TCCTCTCGGCCTCCTCTTC 60.077 63.158 0.00 0.00 0.00 2.87
394 395 1.076339 CCTCTCGGCCTCCTCTTCT 60.076 63.158 0.00 0.00 0.00 2.85
395 396 1.391157 CCTCTCGGCCTCCTCTTCTG 61.391 65.000 0.00 0.00 0.00 3.02
396 397 0.682855 CTCTCGGCCTCCTCTTCTGT 60.683 60.000 0.00 0.00 0.00 3.41
397 398 0.681564 TCTCGGCCTCCTCTTCTGTC 60.682 60.000 0.00 0.00 0.00 3.51
398 399 0.967887 CTCGGCCTCCTCTTCTGTCA 60.968 60.000 0.00 0.00 0.00 3.58
399 400 0.324738 TCGGCCTCCTCTTCTGTCAT 60.325 55.000 0.00 0.00 0.00 3.06
400 401 0.179089 CGGCCTCCTCTTCTGTCATG 60.179 60.000 0.00 0.00 0.00 3.07
401 402 0.463474 GGCCTCCTCTTCTGTCATGC 60.463 60.000 0.00 0.00 0.00 4.06
402 403 0.463474 GCCTCCTCTTCTGTCATGCC 60.463 60.000 0.00 0.00 0.00 4.40
403 404 0.179936 CCTCCTCTTCTGTCATGCCC 59.820 60.000 0.00 0.00 0.00 5.36
404 405 0.907486 CTCCTCTTCTGTCATGCCCA 59.093 55.000 0.00 0.00 0.00 5.36
405 406 1.489649 CTCCTCTTCTGTCATGCCCAT 59.510 52.381 0.00 0.00 0.00 4.00
406 407 1.211212 TCCTCTTCTGTCATGCCCATG 59.789 52.381 1.86 1.86 40.09 3.66
407 408 1.064906 CCTCTTCTGTCATGCCCATGT 60.065 52.381 8.02 0.00 39.72 3.21
408 409 2.286872 CTCTTCTGTCATGCCCATGTC 58.713 52.381 8.02 3.72 39.72 3.06
409 410 1.629861 TCTTCTGTCATGCCCATGTCA 59.370 47.619 8.02 7.85 39.72 3.58
410 411 1.741706 CTTCTGTCATGCCCATGTCAC 59.258 52.381 8.02 1.49 39.72 3.67
411 412 0.986527 TCTGTCATGCCCATGTCACT 59.013 50.000 8.02 0.00 39.72 3.41
412 413 1.092348 CTGTCATGCCCATGTCACTG 58.908 55.000 8.02 1.59 39.72 3.66
413 414 0.401356 TGTCATGCCCATGTCACTGT 59.599 50.000 8.02 0.00 39.72 3.55
414 415 1.202915 TGTCATGCCCATGTCACTGTT 60.203 47.619 8.02 0.00 39.72 3.16
415 416 1.200716 GTCATGCCCATGTCACTGTTG 59.799 52.381 8.02 0.00 39.72 3.33
416 417 1.202915 TCATGCCCATGTCACTGTTGT 60.203 47.619 8.02 0.00 39.72 3.32
417 418 1.200716 CATGCCCATGTCACTGTTGTC 59.799 52.381 0.13 0.00 34.23 3.18
418 419 0.182299 TGCCCATGTCACTGTTGTCA 59.818 50.000 0.00 0.00 0.00 3.58
419 420 0.877071 GCCCATGTCACTGTTGTCAG 59.123 55.000 0.00 0.00 46.18 3.51
420 421 0.877071 CCCATGTCACTGTTGTCAGC 59.123 55.000 0.00 0.00 44.77 4.26
421 422 1.544093 CCCATGTCACTGTTGTCAGCT 60.544 52.381 0.00 0.00 44.77 4.24
422 423 1.534163 CCATGTCACTGTTGTCAGCTG 59.466 52.381 7.63 7.63 44.77 4.24
423 424 2.216046 CATGTCACTGTTGTCAGCTGT 58.784 47.619 14.67 0.00 44.77 4.40
424 425 1.939974 TGTCACTGTTGTCAGCTGTC 58.060 50.000 14.67 9.06 44.77 3.51
425 426 1.206849 TGTCACTGTTGTCAGCTGTCA 59.793 47.619 14.67 12.07 44.77 3.58
426 427 2.158914 TGTCACTGTTGTCAGCTGTCAT 60.159 45.455 14.42 0.00 44.77 3.06
427 428 2.478134 GTCACTGTTGTCAGCTGTCATC 59.522 50.000 14.42 13.70 44.77 2.92
428 429 1.458445 CACTGTTGTCAGCTGTCATCG 59.542 52.381 14.42 11.68 44.77 3.84
429 430 1.069204 ACTGTTGTCAGCTGTCATCGT 59.931 47.619 14.42 12.21 44.77 3.73
430 431 1.458445 CTGTTGTCAGCTGTCATCGTG 59.542 52.381 14.42 7.29 34.79 4.35
431 432 1.202521 TGTTGTCAGCTGTCATCGTGT 60.203 47.619 14.42 0.00 0.00 4.49
432 433 1.193203 GTTGTCAGCTGTCATCGTGTG 59.807 52.381 14.42 0.00 0.00 3.82
433 434 0.319813 TGTCAGCTGTCATCGTGTGG 60.320 55.000 14.67 0.00 0.00 4.17
437 438 0.036952 AGCTGTCATCGTGTGGAAGG 60.037 55.000 0.00 0.00 0.00 3.46
441 442 0.895530 GTCATCGTGTGGAAGGGAGA 59.104 55.000 0.00 0.00 0.00 3.71
446 447 0.390472 CGTGTGGAAGGGAGAAGAGC 60.390 60.000 0.00 0.00 0.00 4.09
450 451 0.972983 TGGAAGGGAGAAGAGCGAGG 60.973 60.000 0.00 0.00 0.00 4.63
451 452 0.684805 GGAAGGGAGAAGAGCGAGGA 60.685 60.000 0.00 0.00 0.00 3.71
452 453 0.744281 GAAGGGAGAAGAGCGAGGAG 59.256 60.000 0.00 0.00 0.00 3.69
453 454 0.040499 AAGGGAGAAGAGCGAGGAGT 59.960 55.000 0.00 0.00 0.00 3.85
454 455 0.920438 AGGGAGAAGAGCGAGGAGTA 59.080 55.000 0.00 0.00 0.00 2.59
455 456 1.497286 AGGGAGAAGAGCGAGGAGTAT 59.503 52.381 0.00 0.00 0.00 2.12
492 493 5.586339 ACTGTGACAAGAGATGATGTATCG 58.414 41.667 0.00 0.00 40.86 2.92
495 496 6.630071 TGTGACAAGAGATGATGTATCGAAA 58.370 36.000 0.00 0.00 40.86 3.46
585 586 0.040425 GCCGCGGTAATAATGCAAGG 60.040 55.000 28.70 0.00 0.00 3.61
586 587 0.040425 CCGCGGTAATAATGCAAGGC 60.040 55.000 19.50 0.00 0.00 4.35
668 670 4.637276 TCTGCCAACACGAAGATTAAAGA 58.363 39.130 0.00 0.00 0.00 2.52
679 681 9.937175 ACACGAAGATTAAAGAAAGAAAGAAAG 57.063 29.630 0.00 0.00 0.00 2.62
751 756 2.226200 TGTTTTCCGTGTCATCATGCTG 59.774 45.455 0.00 0.00 0.00 4.41
752 757 0.804364 TTTCCGTGTCATCATGCTGC 59.196 50.000 0.00 0.00 0.00 5.25
753 758 0.036105 TTCCGTGTCATCATGCTGCT 60.036 50.000 0.00 0.00 0.00 4.24
773 778 0.250793 TAATGTACACCGCCACTGGG 59.749 55.000 0.00 0.00 37.18 4.45
941 987 3.591835 CGCTCTCTCCCTCGCTCC 61.592 72.222 0.00 0.00 0.00 4.70
971 1020 1.303643 CAAGAACCCTGACCCAGCC 60.304 63.158 0.00 0.00 0.00 4.85
972 1021 1.774217 AAGAACCCTGACCCAGCCA 60.774 57.895 0.00 0.00 0.00 4.75
990 1039 4.200283 GCGCAGGACCCGAGAGAG 62.200 72.222 0.30 0.00 0.00 3.20
1247 1308 1.839296 CCTCCTCCTCCCCGATTCC 60.839 68.421 0.00 0.00 0.00 3.01
1248 1309 1.075226 CTCCTCCTCCCCGATTCCA 60.075 63.158 0.00 0.00 0.00 3.53
1249 1310 0.691078 CTCCTCCTCCCCGATTCCAA 60.691 60.000 0.00 0.00 0.00 3.53
1297 1358 2.287915 CGATTTACATTCTTGGCGGAGG 59.712 50.000 0.00 0.00 0.00 4.30
1298 1359 3.541632 GATTTACATTCTTGGCGGAGGA 58.458 45.455 0.00 0.00 0.00 3.71
1299 1360 3.426787 TTTACATTCTTGGCGGAGGAA 57.573 42.857 0.00 0.00 0.00 3.36
1300 1361 3.426787 TTACATTCTTGGCGGAGGAAA 57.573 42.857 0.00 0.00 0.00 3.13
1301 1362 1.826385 ACATTCTTGGCGGAGGAAAG 58.174 50.000 0.00 0.00 0.00 2.62
1306 1367 0.960861 CTTGGCGGAGGAAAGGAACC 60.961 60.000 0.00 0.00 0.00 3.62
1308 1369 2.660802 GCGGAGGAAAGGAACCGA 59.339 61.111 0.00 0.00 46.94 4.69
1314 1375 1.485066 GAGGAAAGGAACCGAGCCATA 59.515 52.381 0.00 0.00 0.00 2.74
1323 1384 1.794714 ACCGAGCCATATCCTGTTCT 58.205 50.000 0.00 0.00 0.00 3.01
1357 1418 5.728351 TTTGTTCTTGCACAGTACTACAC 57.272 39.130 0.00 0.00 0.00 2.90
1359 1420 3.067040 TGTTCTTGCACAGTACTACACGA 59.933 43.478 0.00 0.00 0.00 4.35
1365 1427 2.096496 GCACAGTACTACACGACCGTAT 59.904 50.000 0.00 0.00 0.00 3.06
1368 1431 2.289002 CAGTACTACACGACCGTATCCC 59.711 54.545 0.00 0.00 0.00 3.85
1369 1432 2.171448 AGTACTACACGACCGTATCCCT 59.829 50.000 0.00 0.00 0.00 4.20
1370 1433 1.386533 ACTACACGACCGTATCCCTG 58.613 55.000 0.00 0.00 0.00 4.45
1429 1494 2.434359 CGGAGCGGTTCTTGTCCC 60.434 66.667 0.00 0.00 0.00 4.46
1432 1497 1.376037 GAGCGGTTCTTGTCCCTGG 60.376 63.158 0.00 0.00 0.00 4.45
1462 1528 3.796717 GCAAAATGCGGCTAGTAAAATCC 59.203 43.478 0.00 0.00 31.71 3.01
1467 1533 1.658994 CGGCTAGTAAAATCCGCCAA 58.341 50.000 0.00 0.00 40.72 4.52
1511 1577 7.672983 TCTCTCGATTAATTTTGTTCTTGCT 57.327 32.000 0.00 0.00 0.00 3.91
1512 1578 7.521529 TCTCTCGATTAATTTTGTTCTTGCTG 58.478 34.615 0.00 0.00 0.00 4.41
1531 1597 0.457337 GCATTTTCCGCCTGCAGAAG 60.457 55.000 17.39 8.42 35.96 2.85
1549 1615 0.533755 AGCAGAACCAGACTGTGTGC 60.534 55.000 7.00 7.00 37.64 4.57
1550 1616 0.815213 GCAGAACCAGACTGTGTGCA 60.815 55.000 9.52 0.00 37.64 4.57
1551 1617 1.888215 CAGAACCAGACTGTGTGCAT 58.112 50.000 0.93 0.00 0.00 3.96
1671 1737 2.202676 GCTCGAGTCCGCCAAGAG 60.203 66.667 15.13 0.00 35.37 2.85
1721 1787 5.936686 TCAGAAGAAAACAGCTGAAGATG 57.063 39.130 23.35 7.82 34.71 2.90
1729 1795 1.890489 ACAGCTGAAGATGCATTGCAA 59.110 42.857 23.35 0.00 43.62 4.08
1730 1796 2.094700 ACAGCTGAAGATGCATTGCAAG 60.095 45.455 23.35 9.10 43.62 4.01
1753 1819 2.290134 TGAAGAAGAGAAGCAGCAGCAT 60.290 45.455 3.17 0.00 45.49 3.79
1755 1821 1.015868 GAAGAGAAGCAGCAGCATCC 58.984 55.000 3.17 0.00 45.49 3.51
1781 1850 2.697654 GCAACTGCTCTCTCACTCAAT 58.302 47.619 0.00 0.00 38.21 2.57
1813 1882 0.538287 AACCTGAAGTGAAGCAGCCC 60.538 55.000 0.00 0.00 0.00 5.19
1832 1901 0.164647 CGAAGGAAACGCTGAAGCTG 59.835 55.000 0.10 0.00 39.32 4.24
1840 1912 0.250038 ACGCTGAAGCTGCAGAAGAA 60.250 50.000 26.87 0.00 38.14 2.52
1841 1913 0.443088 CGCTGAAGCTGCAGAAGAAG 59.557 55.000 26.87 10.11 38.14 2.85
1842 1914 1.521580 GCTGAAGCTGCAGAAGAAGT 58.478 50.000 26.87 0.00 38.14 3.01
1843 1915 1.197264 GCTGAAGCTGCAGAAGAAGTG 59.803 52.381 26.87 0.00 38.14 3.16
1844 1916 1.197264 CTGAAGCTGCAGAAGAAGTGC 59.803 52.381 17.72 0.00 41.59 4.40
1855 1927 4.329528 GCAGAAGAAGTGCAGATAACAGAG 59.670 45.833 0.00 0.00 40.86 3.35
1863 1935 2.568956 TGCAGATAACAGAGCCTGAAGT 59.431 45.455 8.91 0.00 35.18 3.01
1864 1936 2.935201 GCAGATAACAGAGCCTGAAGTG 59.065 50.000 8.91 1.67 35.18 3.16
1881 1953 2.219164 TGAAGCAGCAGCCTGAGGA 61.219 57.895 0.65 0.00 41.77 3.71
1892 2021 3.867216 GCAGCCTGAGGAAAATGCAAATT 60.867 43.478 0.65 0.00 33.92 1.82
1915 2044 1.339438 GGAGCTGATGTGGACATGTGT 60.339 52.381 1.15 0.00 36.57 3.72
2050 2179 3.402691 CTCCATCGAGTCGCTGCGT 62.403 63.158 22.48 2.86 0.00 5.24
2051 2180 2.951745 CCATCGAGTCGCTGCGTC 60.952 66.667 22.48 16.75 0.00 5.19
2053 2182 1.587350 CATCGAGTCGCTGCGTCAT 60.587 57.895 22.48 8.98 0.00 3.06
2059 2188 0.455815 AGTCGCTGCGTCATGACATA 59.544 50.000 24.93 12.09 33.83 2.29
2110 2239 2.722201 GGCGAAGGTGTCCTCGGAT 61.722 63.158 0.00 0.00 30.89 4.18
2135 2264 3.817647 CACCTTGGTTTCTTCTCTGAAGG 59.182 47.826 7.37 0.00 35.59 3.46
2146 2275 1.290431 TCTCTGAAGGAGGAGCTGGAT 59.710 52.381 0.00 0.00 42.10 3.41
2156 2285 1.323271 GGAGCTGGATCAGACCACGA 61.323 60.000 0.00 0.00 35.91 4.35
2239 2368 4.273318 TCGAGATCAAGAGGATGACTTCA 58.727 43.478 0.00 0.00 36.00 3.02
2278 2407 4.047030 GCAGCAAATGCGTCGAAG 57.953 55.556 0.00 0.00 46.99 3.79
2323 2452 0.990374 AGATTGAGCAGACCAAGGCT 59.010 50.000 0.00 0.00 44.48 4.58
2472 2601 0.545171 CAGGGCACAGATGGAGTGAT 59.455 55.000 0.00 0.00 39.30 3.06
2508 2637 0.885879 TACTCCGAGCTTGCTTCGAA 59.114 50.000 13.12 0.00 40.36 3.71
2560 2689 0.613853 AGATTGCAGCTGCCATGGTT 60.614 50.000 34.64 14.50 41.18 3.67
2566 2695 1.753930 CAGCTGCCATGGTTCATGTA 58.246 50.000 14.67 0.00 39.94 2.29
2590 2719 2.293122 CGAAGCCAACCAATCAAAGTCA 59.707 45.455 0.00 0.00 0.00 3.41
2635 2764 1.821136 GCCAAAATGGAGGTTGAGGAG 59.179 52.381 0.00 0.00 40.96 3.69
2638 2767 3.490348 CAAAATGGAGGTTGAGGAGTGT 58.510 45.455 0.00 0.00 0.00 3.55
2791 2920 1.308047 TCAAAACTGCAGCACATCGT 58.692 45.000 15.27 0.00 0.00 3.73
2822 2951 2.014335 TTCTCACTGCATGGACATCG 57.986 50.000 0.00 0.00 0.00 3.84
2923 3052 4.891566 GACAAGAGCGTGTCGGAT 57.108 55.556 1.06 0.00 38.68 4.18
3100 3229 0.178981 AGCAGGCCAAGAGCAAGAAA 60.179 50.000 5.01 0.00 46.50 2.52
3169 3299 5.914033 AGCTAGTTACTGAGTGTTTTGACA 58.086 37.500 0.00 0.00 0.00 3.58
3174 3304 2.919228 ACTGAGTGTTTTGACACCCTC 58.081 47.619 6.10 0.07 41.26 4.30
3185 3315 2.338809 TGACACCCTCTTTCCATGTCT 58.661 47.619 4.50 0.00 40.28 3.41
3248 3382 9.495572 CTAGGTTAATGAGGTTCTGATATTTCC 57.504 37.037 0.00 0.00 0.00 3.13
3249 3383 7.872138 AGGTTAATGAGGTTCTGATATTTCCA 58.128 34.615 0.00 0.00 0.00 3.53
3297 3431 5.300539 GTCTAGCATCTCCTGAGTGATGTTA 59.699 44.000 12.11 10.08 43.08 2.41
3298 3432 4.669206 AGCATCTCCTGAGTGATGTTAG 57.331 45.455 12.11 0.00 43.08 2.34
3301 3435 4.691175 CATCTCCTGAGTGATGTTAGTGG 58.309 47.826 5.04 0.00 38.58 4.00
3306 3440 5.330233 TCCTGAGTGATGTTAGTGGTTAGA 58.670 41.667 0.00 0.00 0.00 2.10
3308 3442 6.440647 TCCTGAGTGATGTTAGTGGTTAGATT 59.559 38.462 0.00 0.00 0.00 2.40
3309 3443 7.038302 TCCTGAGTGATGTTAGTGGTTAGATTT 60.038 37.037 0.00 0.00 0.00 2.17
3310 3444 8.258007 CCTGAGTGATGTTAGTGGTTAGATTTA 58.742 37.037 0.00 0.00 0.00 1.40
3311 3445 9.307121 CTGAGTGATGTTAGTGGTTAGATTTAG 57.693 37.037 0.00 0.00 0.00 1.85
3313 3447 9.303537 GAGTGATGTTAGTGGTTAGATTTAGAC 57.696 37.037 0.00 0.00 0.00 2.59
3314 3448 9.036980 AGTGATGTTAGTGGTTAGATTTAGACT 57.963 33.333 0.00 0.00 0.00 3.24
3357 3500 6.323203 ACATGGAAGATTTCAGTTGAGTTG 57.677 37.500 0.00 0.00 0.00 3.16
3358 3501 5.829924 ACATGGAAGATTTCAGTTGAGTTGT 59.170 36.000 0.00 0.00 0.00 3.32
3359 3502 6.322201 ACATGGAAGATTTCAGTTGAGTTGTT 59.678 34.615 0.00 0.00 0.00 2.83
3360 3503 7.502226 ACATGGAAGATTTCAGTTGAGTTGTTA 59.498 33.333 0.00 0.00 0.00 2.41
3625 3769 8.378565 GTTGATCCCTTATTCATATTCTCCTGA 58.621 37.037 0.00 0.00 0.00 3.86
3990 4249 8.000780 AGGAATTAAATTAGATGTGTTGCCTC 57.999 34.615 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.374565 AGAGCTTATCTCAAATTGATGCAC 57.625 37.500 0.00 0.00 44.35 4.57
1 2 6.201615 CGTAGAGCTTATCTCAAATTGATGCA 59.798 38.462 0.00 0.00 44.35 3.96
2 3 6.201806 ACGTAGAGCTTATCTCAAATTGATGC 59.798 38.462 0.00 0.00 44.35 3.91
3 4 7.436376 TCACGTAGAGCTTATCTCAAATTGATG 59.564 37.037 0.00 0.00 44.35 3.07
4 5 7.492524 TCACGTAGAGCTTATCTCAAATTGAT 58.507 34.615 0.00 0.00 44.35 2.57
5 6 6.863275 TCACGTAGAGCTTATCTCAAATTGA 58.137 36.000 0.00 0.00 44.35 2.57
6 7 7.525688 TTCACGTAGAGCTTATCTCAAATTG 57.474 36.000 0.00 0.00 44.35 2.32
7 8 8.547967 TTTTCACGTAGAGCTTATCTCAAATT 57.452 30.769 0.00 0.00 44.35 1.82
8 9 8.547967 TTTTTCACGTAGAGCTTATCTCAAAT 57.452 30.769 0.00 0.00 44.35 2.32
9 10 7.870954 TCTTTTTCACGTAGAGCTTATCTCAAA 59.129 33.333 0.00 0.00 44.35 2.69
10 11 7.375834 TCTTTTTCACGTAGAGCTTATCTCAA 58.624 34.615 0.00 0.00 44.35 3.02
11 12 6.920817 TCTTTTTCACGTAGAGCTTATCTCA 58.079 36.000 0.00 0.00 44.35 3.27
12 13 7.515998 GCATCTTTTTCACGTAGAGCTTATCTC 60.516 40.741 0.00 0.00 39.64 2.75
13 14 6.256757 GCATCTTTTTCACGTAGAGCTTATCT 59.743 38.462 0.00 0.00 42.47 1.98
14 15 6.414890 GCATCTTTTTCACGTAGAGCTTATC 58.585 40.000 0.00 0.00 0.00 1.75
15 16 5.005779 CGCATCTTTTTCACGTAGAGCTTAT 59.994 40.000 0.00 0.00 0.00 1.73
16 17 4.326278 CGCATCTTTTTCACGTAGAGCTTA 59.674 41.667 0.00 0.00 0.00 3.09
17 18 3.123621 CGCATCTTTTTCACGTAGAGCTT 59.876 43.478 0.00 0.00 0.00 3.74
18 19 2.668457 CGCATCTTTTTCACGTAGAGCT 59.332 45.455 0.00 0.00 0.00 4.09
19 20 2.784665 GCGCATCTTTTTCACGTAGAGC 60.785 50.000 0.30 0.00 0.00 4.09
20 21 2.411748 TGCGCATCTTTTTCACGTAGAG 59.588 45.455 5.66 0.00 0.00 2.43
21 22 2.409012 TGCGCATCTTTTTCACGTAGA 58.591 42.857 5.66 0.00 0.00 2.59
22 23 2.873170 TGCGCATCTTTTTCACGTAG 57.127 45.000 5.66 0.00 0.00 3.51
23 24 2.222707 CGATGCGCATCTTTTTCACGTA 60.223 45.455 38.93 2.57 35.72 3.57
24 25 1.464023 CGATGCGCATCTTTTTCACGT 60.464 47.619 38.93 10.17 35.72 4.49
25 26 1.174352 CGATGCGCATCTTTTTCACG 58.826 50.000 38.93 24.78 35.72 4.35
26 27 2.525750 TCGATGCGCATCTTTTTCAC 57.474 45.000 38.93 18.12 35.72 3.18
27 28 2.419673 ACATCGATGCGCATCTTTTTCA 59.580 40.909 38.93 20.53 35.72 2.69
28 29 3.056952 ACATCGATGCGCATCTTTTTC 57.943 42.857 38.93 20.56 35.72 2.29
29 30 3.492421 AACATCGATGCGCATCTTTTT 57.508 38.095 38.93 25.85 35.72 1.94
30 31 4.530388 CATAACATCGATGCGCATCTTTT 58.470 39.130 38.93 28.24 35.72 2.27
31 32 3.058708 CCATAACATCGATGCGCATCTTT 60.059 43.478 38.93 28.52 35.72 2.52
32 33 2.481568 CCATAACATCGATGCGCATCTT 59.518 45.455 38.93 29.90 35.72 2.40
33 34 2.071540 CCATAACATCGATGCGCATCT 58.928 47.619 38.93 26.32 35.72 2.90
34 35 1.800586 ACCATAACATCGATGCGCATC 59.199 47.619 35.20 35.20 34.56 3.91
35 36 1.882912 ACCATAACATCGATGCGCAT 58.117 45.000 25.66 25.66 0.00 4.73
36 37 1.597195 GAACCATAACATCGATGCGCA 59.403 47.619 25.11 14.96 0.00 6.09
37 38 1.069906 GGAACCATAACATCGATGCGC 60.070 52.381 25.11 0.00 0.00 6.09
38 39 2.209273 TGGAACCATAACATCGATGCG 58.791 47.619 25.11 11.02 0.00 4.73
39 40 4.836125 ATTGGAACCATAACATCGATGC 57.164 40.909 25.11 6.10 0.00 3.91
40 41 7.009448 CACAAAATTGGAACCATAACATCGATG 59.991 37.037 23.68 23.68 0.00 3.84
41 42 7.035004 CACAAAATTGGAACCATAACATCGAT 58.965 34.615 0.00 0.00 0.00 3.59
42 43 6.207614 TCACAAAATTGGAACCATAACATCGA 59.792 34.615 0.00 0.00 0.00 3.59
43 44 6.385843 TCACAAAATTGGAACCATAACATCG 58.614 36.000 0.00 0.00 0.00 3.84
44 45 8.034215 TGATCACAAAATTGGAACCATAACATC 58.966 33.333 0.00 0.00 0.00 3.06
45 46 7.905265 TGATCACAAAATTGGAACCATAACAT 58.095 30.769 0.00 0.00 0.00 2.71
46 47 7.015098 ACTGATCACAAAATTGGAACCATAACA 59.985 33.333 0.00 0.00 0.00 2.41
47 48 7.378181 ACTGATCACAAAATTGGAACCATAAC 58.622 34.615 0.00 0.00 0.00 1.89
48 49 7.537596 ACTGATCACAAAATTGGAACCATAA 57.462 32.000 0.00 0.00 0.00 1.90
49 50 7.232330 TGAACTGATCACAAAATTGGAACCATA 59.768 33.333 0.00 0.00 31.50 2.74
50 51 6.041865 TGAACTGATCACAAAATTGGAACCAT 59.958 34.615 0.00 0.00 31.50 3.55
51 52 5.362143 TGAACTGATCACAAAATTGGAACCA 59.638 36.000 0.00 0.00 31.50 3.67
52 53 5.841810 TGAACTGATCACAAAATTGGAACC 58.158 37.500 0.00 0.00 31.50 3.62
53 54 8.299570 ACTATGAACTGATCACAAAATTGGAAC 58.700 33.333 0.00 0.00 41.93 3.62
54 55 8.408043 ACTATGAACTGATCACAAAATTGGAA 57.592 30.769 0.00 0.00 41.93 3.53
55 56 8.408043 AACTATGAACTGATCACAAAATTGGA 57.592 30.769 0.00 0.00 41.93 3.53
56 57 9.132521 GAAACTATGAACTGATCACAAAATTGG 57.867 33.333 0.00 0.00 41.93 3.16
57 58 9.681692 TGAAACTATGAACTGATCACAAAATTG 57.318 29.630 0.00 0.00 41.93 2.32
60 61 8.229811 CGATGAAACTATGAACTGATCACAAAA 58.770 33.333 0.00 0.00 41.93 2.44
61 62 7.602265 TCGATGAAACTATGAACTGATCACAAA 59.398 33.333 0.00 0.00 41.93 2.83
62 63 7.063426 GTCGATGAAACTATGAACTGATCACAA 59.937 37.037 0.00 0.00 41.93 3.33
63 64 6.531594 GTCGATGAAACTATGAACTGATCACA 59.468 38.462 0.00 0.00 41.93 3.58
64 65 6.019479 GGTCGATGAAACTATGAACTGATCAC 60.019 42.308 0.00 0.00 41.93 3.06
65 66 6.042777 GGTCGATGAAACTATGAACTGATCA 58.957 40.000 0.00 0.00 43.67 2.92
66 67 5.174035 CGGTCGATGAAACTATGAACTGATC 59.826 44.000 0.00 0.00 0.00 2.92
67 68 5.043903 CGGTCGATGAAACTATGAACTGAT 58.956 41.667 0.00 0.00 0.00 2.90
68 69 4.082408 ACGGTCGATGAAACTATGAACTGA 60.082 41.667 0.00 0.00 0.00 3.41
69 70 4.174009 ACGGTCGATGAAACTATGAACTG 58.826 43.478 0.00 0.00 0.00 3.16
70 71 4.451629 ACGGTCGATGAAACTATGAACT 57.548 40.909 0.00 0.00 0.00 3.01
71 72 6.636666 TTTACGGTCGATGAAACTATGAAC 57.363 37.500 0.00 0.00 0.00 3.18
72 73 6.814644 ACATTTACGGTCGATGAAACTATGAA 59.185 34.615 9.72 0.00 0.00 2.57
73 74 6.334989 ACATTTACGGTCGATGAAACTATGA 58.665 36.000 9.72 0.00 0.00 2.15
74 75 6.583912 ACATTTACGGTCGATGAAACTATG 57.416 37.500 9.72 0.00 0.00 2.23
75 76 7.605410 AAACATTTACGGTCGATGAAACTAT 57.395 32.000 9.72 0.00 0.00 2.12
76 77 8.531622 TTAAACATTTACGGTCGATGAAACTA 57.468 30.769 9.72 0.00 0.00 2.24
77 78 5.934935 AAACATTTACGGTCGATGAAACT 57.065 34.783 9.72 0.00 0.00 2.66
78 79 8.663771 AATTAAACATTTACGGTCGATGAAAC 57.336 30.769 9.72 0.00 0.00 2.78
79 80 9.332301 GAAATTAAACATTTACGGTCGATGAAA 57.668 29.630 9.72 0.00 0.00 2.69
80 81 7.688989 CGAAATTAAACATTTACGGTCGATGAA 59.311 33.333 9.72 0.00 0.00 2.57
81 82 7.148606 ACGAAATTAAACATTTACGGTCGATGA 60.149 33.333 9.72 0.00 0.00 2.92
82 83 6.957077 ACGAAATTAAACATTTACGGTCGATG 59.043 34.615 12.88 0.00 0.00 3.84
83 84 6.957077 CACGAAATTAAACATTTACGGTCGAT 59.043 34.615 12.88 0.00 0.00 3.59
84 85 6.073873 ACACGAAATTAAACATTTACGGTCGA 60.074 34.615 12.88 0.00 0.00 4.20
85 86 6.072733 ACACGAAATTAAACATTTACGGTCG 58.927 36.000 0.00 0.00 0.00 4.79
86 87 7.587028 TGAACACGAAATTAAACATTTACGGTC 59.413 33.333 0.00 0.00 0.00 4.79
87 88 7.416022 TGAACACGAAATTAAACATTTACGGT 58.584 30.769 0.00 0.00 0.00 4.83
88 89 7.839438 TGAACACGAAATTAAACATTTACGG 57.161 32.000 0.00 0.00 0.00 4.02
89 90 8.897809 ACATGAACACGAAATTAAACATTTACG 58.102 29.630 0.00 0.00 0.00 3.18
95 96 9.658475 CTCTAAACATGAACACGAAATTAAACA 57.342 29.630 0.00 0.00 0.00 2.83
96 97 8.627428 GCTCTAAACATGAACACGAAATTAAAC 58.373 33.333 0.00 0.00 0.00 2.01
97 98 8.564574 AGCTCTAAACATGAACACGAAATTAAA 58.435 29.630 0.00 0.00 0.00 1.52
98 99 8.094798 AGCTCTAAACATGAACACGAAATTAA 57.905 30.769 0.00 0.00 0.00 1.40
99 100 7.667043 AGCTCTAAACATGAACACGAAATTA 57.333 32.000 0.00 0.00 0.00 1.40
100 101 6.560253 AGCTCTAAACATGAACACGAAATT 57.440 33.333 0.00 0.00 0.00 1.82
101 102 7.849804 ATAGCTCTAAACATGAACACGAAAT 57.150 32.000 0.00 0.00 0.00 2.17
102 103 7.667043 AATAGCTCTAAACATGAACACGAAA 57.333 32.000 0.00 0.00 0.00 3.46
103 104 7.667043 AAATAGCTCTAAACATGAACACGAA 57.333 32.000 0.00 0.00 0.00 3.85
104 105 7.360861 CCAAAATAGCTCTAAACATGAACACGA 60.361 37.037 0.00 0.00 0.00 4.35
105 106 6.742718 CCAAAATAGCTCTAAACATGAACACG 59.257 38.462 0.00 0.00 0.00 4.49
106 107 7.816640 TCCAAAATAGCTCTAAACATGAACAC 58.183 34.615 0.00 0.00 0.00 3.32
107 108 7.994425 TCCAAAATAGCTCTAAACATGAACA 57.006 32.000 0.00 0.00 0.00 3.18
108 109 8.677300 TCATCCAAAATAGCTCTAAACATGAAC 58.323 33.333 0.00 0.00 0.00 3.18
109 110 8.806429 TCATCCAAAATAGCTCTAAACATGAA 57.194 30.769 0.00 0.00 0.00 2.57
110 111 8.806429 TTCATCCAAAATAGCTCTAAACATGA 57.194 30.769 0.00 0.00 0.00 3.07
117 118 9.241919 TGACAAAATTCATCCAAAATAGCTCTA 57.758 29.630 0.00 0.00 0.00 2.43
118 119 8.125978 TGACAAAATTCATCCAAAATAGCTCT 57.874 30.769 0.00 0.00 0.00 4.09
119 120 8.761575 TTGACAAAATTCATCCAAAATAGCTC 57.238 30.769 0.00 0.00 0.00 4.09
120 121 9.729281 ATTTGACAAAATTCATCCAAAATAGCT 57.271 25.926 4.41 0.00 31.76 3.32
134 135 3.986572 TGCGCGATGAATTTGACAAAATT 59.013 34.783 12.10 0.00 46.37 1.82
135 136 3.364621 GTGCGCGATGAATTTGACAAAAT 59.635 39.130 12.10 0.00 37.61 1.82
136 137 2.723658 GTGCGCGATGAATTTGACAAAA 59.276 40.909 12.10 0.00 0.00 2.44
137 138 2.287248 TGTGCGCGATGAATTTGACAAA 60.287 40.909 12.10 2.48 0.00 2.83
138 139 1.265365 TGTGCGCGATGAATTTGACAA 59.735 42.857 12.10 0.00 0.00 3.18
139 140 0.871057 TGTGCGCGATGAATTTGACA 59.129 45.000 12.10 0.00 0.00 3.58
140 141 1.527696 CTGTGCGCGATGAATTTGAC 58.472 50.000 12.10 0.00 0.00 3.18
141 142 0.179192 GCTGTGCGCGATGAATTTGA 60.179 50.000 12.10 0.00 0.00 2.69
142 143 0.179181 AGCTGTGCGCGATGAATTTG 60.179 50.000 12.10 0.00 45.59 2.32
143 144 0.179181 CAGCTGTGCGCGATGAATTT 60.179 50.000 12.10 0.00 45.59 1.82
144 145 1.020861 TCAGCTGTGCGCGATGAATT 61.021 50.000 12.10 0.00 45.59 2.17
145 146 1.448365 TCAGCTGTGCGCGATGAAT 60.448 52.632 12.10 0.00 45.59 2.57
146 147 2.048316 TCAGCTGTGCGCGATGAA 60.048 55.556 12.10 0.00 45.59 2.57
147 148 2.810887 GTCAGCTGTGCGCGATGA 60.811 61.111 12.10 0.00 45.59 2.92
148 149 3.857854 GGTCAGCTGTGCGCGATG 61.858 66.667 12.10 0.00 45.59 3.84
152 153 4.077188 GAACGGTCAGCTGTGCGC 62.077 66.667 14.67 0.00 33.83 6.09
153 154 3.767230 CGAACGGTCAGCTGTGCG 61.767 66.667 14.67 0.02 45.46 5.34
154 155 1.291877 ATTCGAACGGTCAGCTGTGC 61.292 55.000 14.67 8.02 33.83 4.57
155 156 1.126846 GAATTCGAACGGTCAGCTGTG 59.873 52.381 14.67 7.69 33.83 3.66
156 157 1.000955 AGAATTCGAACGGTCAGCTGT 59.999 47.619 14.67 0.00 35.32 4.40
157 158 1.656095 GAGAATTCGAACGGTCAGCTG 59.344 52.381 7.63 7.63 0.00 4.24
158 159 1.404315 GGAGAATTCGAACGGTCAGCT 60.404 52.381 0.00 0.00 0.00 4.24
159 160 1.000145 GGAGAATTCGAACGGTCAGC 59.000 55.000 0.00 0.00 0.00 4.26
160 161 2.656560 AGGAGAATTCGAACGGTCAG 57.343 50.000 0.00 0.00 0.00 3.51
161 162 3.064207 CAAAGGAGAATTCGAACGGTCA 58.936 45.455 0.00 0.00 0.00 4.02
162 163 3.323243 TCAAAGGAGAATTCGAACGGTC 58.677 45.455 0.00 0.00 0.00 4.79
163 164 3.396260 TCAAAGGAGAATTCGAACGGT 57.604 42.857 0.00 0.00 0.00 4.83
164 165 3.932710 TGATCAAAGGAGAATTCGAACGG 59.067 43.478 0.00 0.00 0.00 4.44
165 166 4.627467 ACTGATCAAAGGAGAATTCGAACG 59.373 41.667 0.00 0.00 0.00 3.95
166 167 6.237969 GCTACTGATCAAAGGAGAATTCGAAC 60.238 42.308 0.00 0.00 28.35 3.95
167 168 5.812642 GCTACTGATCAAAGGAGAATTCGAA 59.187 40.000 0.00 0.00 28.35 3.71
168 169 5.127845 AGCTACTGATCAAAGGAGAATTCGA 59.872 40.000 0.00 0.00 28.35 3.71
169 170 5.355596 AGCTACTGATCAAAGGAGAATTCG 58.644 41.667 0.00 0.00 28.35 3.34
170 171 6.820656 TGAAGCTACTGATCAAAGGAGAATTC 59.179 38.462 0.00 0.00 28.35 2.17
171 172 6.597280 GTGAAGCTACTGATCAAAGGAGAATT 59.403 38.462 0.00 0.00 28.35 2.17
172 173 6.112058 GTGAAGCTACTGATCAAAGGAGAAT 58.888 40.000 0.00 0.00 28.35 2.40
173 174 5.482908 GTGAAGCTACTGATCAAAGGAGAA 58.517 41.667 0.00 0.00 28.35 2.87
174 175 4.081420 GGTGAAGCTACTGATCAAAGGAGA 60.081 45.833 0.00 0.00 28.35 3.71
175 176 4.081198 AGGTGAAGCTACTGATCAAAGGAG 60.081 45.833 0.00 0.00 0.00 3.69
176 177 3.840666 AGGTGAAGCTACTGATCAAAGGA 59.159 43.478 0.00 0.00 0.00 3.36
177 178 4.213564 AGGTGAAGCTACTGATCAAAGG 57.786 45.455 0.00 0.00 0.00 3.11
178 179 6.166279 TGTAAGGTGAAGCTACTGATCAAAG 58.834 40.000 0.00 0.00 0.00 2.77
179 180 6.109156 TGTAAGGTGAAGCTACTGATCAAA 57.891 37.500 0.00 0.00 0.00 2.69
180 181 5.246203 ACTGTAAGGTGAAGCTACTGATCAA 59.754 40.000 0.00 0.00 39.30 2.57
181 182 4.772624 ACTGTAAGGTGAAGCTACTGATCA 59.227 41.667 0.00 0.00 39.30 2.92
182 183 5.331876 ACTGTAAGGTGAAGCTACTGATC 57.668 43.478 0.00 0.00 39.30 2.92
183 184 5.746990 AACTGTAAGGTGAAGCTACTGAT 57.253 39.130 0.00 0.00 39.30 2.90
184 185 5.069914 TGAAACTGTAAGGTGAAGCTACTGA 59.930 40.000 0.00 0.00 39.30 3.41
185 186 5.177696 GTGAAACTGTAAGGTGAAGCTACTG 59.822 44.000 0.00 0.00 39.30 2.74
186 187 5.163343 TGTGAAACTGTAAGGTGAAGCTACT 60.163 40.000 0.00 0.00 39.30 2.57
187 188 5.054477 TGTGAAACTGTAAGGTGAAGCTAC 58.946 41.667 0.00 0.00 39.30 3.58
188 189 5.284861 TGTGAAACTGTAAGGTGAAGCTA 57.715 39.130 0.00 0.00 39.30 3.32
189 190 4.150897 TGTGAAACTGTAAGGTGAAGCT 57.849 40.909 0.00 0.00 39.30 3.74
190 191 4.515191 TCATGTGAAACTGTAAGGTGAAGC 59.485 41.667 0.00 0.00 39.30 3.86
191 192 6.808008 ATCATGTGAAACTGTAAGGTGAAG 57.192 37.500 0.00 0.00 39.30 3.02
192 193 7.581213 AAATCATGTGAAACTGTAAGGTGAA 57.419 32.000 0.00 0.00 39.30 3.18
193 194 7.581213 AAAATCATGTGAAACTGTAAGGTGA 57.419 32.000 0.00 0.00 39.30 4.02
194 195 7.706179 ACAAAAATCATGTGAAACTGTAAGGTG 59.294 33.333 0.00 0.00 39.30 4.00
195 196 7.781056 ACAAAAATCATGTGAAACTGTAAGGT 58.219 30.769 0.00 0.00 39.30 3.50
221 222 3.181554 CGTCGCAACATAAAATGTGCAAC 60.182 43.478 0.00 5.81 44.07 4.17
222 223 2.976509 CGTCGCAACATAAAATGTGCAA 59.023 40.909 0.00 0.00 44.07 4.08
223 224 2.224314 TCGTCGCAACATAAAATGTGCA 59.776 40.909 11.94 0.00 44.07 4.57
224 225 2.845486 TCGTCGCAACATAAAATGTGC 58.155 42.857 0.00 0.00 44.07 4.57
225 226 3.714016 CGATCGTCGCAACATAAAATGTG 59.286 43.478 7.03 0.00 36.94 3.21
226 227 3.369756 ACGATCGTCGCAACATAAAATGT 59.630 39.130 16.60 0.00 45.12 2.71
227 228 3.923412 ACGATCGTCGCAACATAAAATG 58.077 40.909 16.60 0.00 45.12 2.32
228 229 5.038683 TCTACGATCGTCGCAACATAAAAT 58.961 37.500 26.48 0.00 45.12 1.82
229 230 4.263677 GTCTACGATCGTCGCAACATAAAA 59.736 41.667 26.48 0.91 45.12 1.52
230 231 3.787634 GTCTACGATCGTCGCAACATAAA 59.212 43.478 26.48 1.50 45.12 1.40
231 232 3.357021 GTCTACGATCGTCGCAACATAA 58.643 45.455 26.48 2.33 45.12 1.90
232 233 2.598205 CGTCTACGATCGTCGCAACATA 60.598 50.000 26.48 3.15 45.12 2.29
233 234 1.823828 GTCTACGATCGTCGCAACAT 58.176 50.000 26.48 0.00 45.12 2.71
234 235 0.519792 CGTCTACGATCGTCGCAACA 60.520 55.000 26.48 4.83 45.12 3.33
235 236 0.247419 TCGTCTACGATCGTCGCAAC 60.247 55.000 26.48 16.51 45.12 4.17
236 237 2.080700 TCGTCTACGATCGTCGCAA 58.919 52.632 26.48 6.10 45.12 4.85
237 238 3.784746 TCGTCTACGATCGTCGCA 58.215 55.556 26.48 6.52 45.12 5.10
246 247 3.611517 ACGTCGGATTTAATCGTCTACG 58.388 45.455 13.96 13.96 41.45 3.51
251 252 3.129988 AGGAAGACGTCGGATTTAATCGT 59.870 43.478 10.46 0.00 37.45 3.73
252 253 3.703420 AGGAAGACGTCGGATTTAATCG 58.297 45.455 10.46 0.00 0.00 3.34
253 254 3.729716 CGAGGAAGACGTCGGATTTAATC 59.270 47.826 10.46 0.00 46.22 1.75
254 255 3.703420 CGAGGAAGACGTCGGATTTAAT 58.297 45.455 10.46 0.00 46.22 1.40
255 256 3.141002 CGAGGAAGACGTCGGATTTAA 57.859 47.619 10.46 0.00 46.22 1.52
256 257 2.838386 CGAGGAAGACGTCGGATTTA 57.162 50.000 10.46 0.00 46.22 1.40
257 258 3.715854 CGAGGAAGACGTCGGATTT 57.284 52.632 10.46 0.00 46.22 2.17
269 270 8.749354 ACATATGCATATATACTTCACGAGGAA 58.251 33.333 18.70 0.00 0.00 3.36
270 271 8.190784 CACATATGCATATATACTTCACGAGGA 58.809 37.037 18.70 0.00 0.00 3.71
271 272 7.976175 ACACATATGCATATATACTTCACGAGG 59.024 37.037 18.70 4.82 0.00 4.63
272 273 8.801913 CACACATATGCATATATACTTCACGAG 58.198 37.037 18.70 5.00 0.00 4.18
273 274 8.519526 TCACACATATGCATATATACTTCACGA 58.480 33.333 18.70 4.26 0.00 4.35
274 275 8.687824 TCACACATATGCATATATACTTCACG 57.312 34.615 18.70 6.17 0.00 4.35
285 286 9.733219 CATTAACACAAATCACACATATGCATA 57.267 29.630 9.27 9.27 0.00 3.14
286 287 8.468399 TCATTAACACAAATCACACATATGCAT 58.532 29.630 3.79 3.79 0.00 3.96
287 288 7.754475 GTCATTAACACAAATCACACATATGCA 59.246 33.333 1.58 0.00 0.00 3.96
288 289 7.754475 TGTCATTAACACAAATCACACATATGC 59.246 33.333 1.58 0.00 31.20 3.14
304 305 5.168569 CGAGCTTAAGGAGTGTCATTAACA 58.831 41.667 4.29 0.00 30.68 2.41
305 306 4.567159 CCGAGCTTAAGGAGTGTCATTAAC 59.433 45.833 4.29 0.00 30.68 2.01
306 307 4.222145 ACCGAGCTTAAGGAGTGTCATTAA 59.778 41.667 4.29 0.00 32.60 1.40
307 308 3.767673 ACCGAGCTTAAGGAGTGTCATTA 59.232 43.478 4.29 0.00 0.00 1.90
308 309 2.567615 ACCGAGCTTAAGGAGTGTCATT 59.432 45.455 4.29 0.00 0.00 2.57
309 310 2.166664 GACCGAGCTTAAGGAGTGTCAT 59.833 50.000 4.29 0.00 0.00 3.06
310 311 1.544691 GACCGAGCTTAAGGAGTGTCA 59.455 52.381 4.29 0.00 0.00 3.58
311 312 1.819903 AGACCGAGCTTAAGGAGTGTC 59.180 52.381 4.29 0.00 0.00 3.67
312 313 1.819903 GAGACCGAGCTTAAGGAGTGT 59.180 52.381 4.29 0.00 0.00 3.55
313 314 2.096248 AGAGACCGAGCTTAAGGAGTG 58.904 52.381 4.29 0.00 0.00 3.51
314 315 2.517998 AGAGACCGAGCTTAAGGAGT 57.482 50.000 4.29 0.00 0.00 3.85
315 316 3.020984 AGAAGAGACCGAGCTTAAGGAG 58.979 50.000 4.29 0.00 0.00 3.69
316 317 3.018149 GAGAAGAGACCGAGCTTAAGGA 58.982 50.000 4.29 0.00 0.00 3.36
317 318 2.100087 GGAGAAGAGACCGAGCTTAAGG 59.900 54.545 4.29 0.00 0.00 2.69
318 319 3.020984 AGGAGAAGAGACCGAGCTTAAG 58.979 50.000 0.00 0.00 0.00 1.85
319 320 3.018149 GAGGAGAAGAGACCGAGCTTAA 58.982 50.000 0.00 0.00 0.00 1.85
320 321 2.240160 AGAGGAGAAGAGACCGAGCTTA 59.760 50.000 0.00 0.00 0.00 3.09
321 322 1.005450 AGAGGAGAAGAGACCGAGCTT 59.995 52.381 0.00 0.00 0.00 3.74
322 323 0.623723 AGAGGAGAAGAGACCGAGCT 59.376 55.000 0.00 0.00 0.00 4.09
323 324 1.470051 AAGAGGAGAAGAGACCGAGC 58.530 55.000 0.00 0.00 0.00 5.03
324 325 3.761752 AGAAAAGAGGAGAAGAGACCGAG 59.238 47.826 0.00 0.00 0.00 4.63
325 326 3.508012 CAGAAAAGAGGAGAAGAGACCGA 59.492 47.826 0.00 0.00 0.00 4.69
326 327 3.843999 CAGAAAAGAGGAGAAGAGACCG 58.156 50.000 0.00 0.00 0.00 4.79
327 328 3.260632 AGCAGAAAAGAGGAGAAGAGACC 59.739 47.826 0.00 0.00 0.00 3.85
328 329 4.494484 GAGCAGAAAAGAGGAGAAGAGAC 58.506 47.826 0.00 0.00 0.00 3.36
329 330 3.513515 GGAGCAGAAAAGAGGAGAAGAGA 59.486 47.826 0.00 0.00 0.00 3.10
330 331 3.260380 TGGAGCAGAAAAGAGGAGAAGAG 59.740 47.826 0.00 0.00 0.00 2.85
331 332 3.007398 GTGGAGCAGAAAAGAGGAGAAGA 59.993 47.826 0.00 0.00 0.00 2.87
332 333 3.333804 GTGGAGCAGAAAAGAGGAGAAG 58.666 50.000 0.00 0.00 0.00 2.85
333 334 2.039084 GGTGGAGCAGAAAAGAGGAGAA 59.961 50.000 0.00 0.00 0.00 2.87
334 335 1.625818 GGTGGAGCAGAAAAGAGGAGA 59.374 52.381 0.00 0.00 0.00 3.71
335 336 1.674221 CGGTGGAGCAGAAAAGAGGAG 60.674 57.143 0.00 0.00 0.00 3.69
336 337 0.321671 CGGTGGAGCAGAAAAGAGGA 59.678 55.000 0.00 0.00 0.00 3.71
337 338 0.674895 CCGGTGGAGCAGAAAAGAGG 60.675 60.000 0.00 0.00 0.00 3.69
338 339 1.301677 GCCGGTGGAGCAGAAAAGAG 61.302 60.000 1.90 0.00 0.00 2.85
339 340 1.302511 GCCGGTGGAGCAGAAAAGA 60.303 57.895 1.90 0.00 0.00 2.52
340 341 2.680913 CGCCGGTGGAGCAGAAAAG 61.681 63.158 7.26 0.00 0.00 2.27
341 342 2.668212 CGCCGGTGGAGCAGAAAA 60.668 61.111 7.26 0.00 0.00 2.29
342 343 3.876589 GACGCCGGTGGAGCAGAAA 62.877 63.158 21.14 0.00 0.00 2.52
343 344 4.373116 GACGCCGGTGGAGCAGAA 62.373 66.667 21.14 0.00 0.00 3.02
377 378 0.682855 ACAGAAGAGGAGGCCGAGAG 60.683 60.000 0.00 0.00 0.00 3.20
378 379 0.681564 GACAGAAGAGGAGGCCGAGA 60.682 60.000 0.00 0.00 0.00 4.04
379 380 0.967887 TGACAGAAGAGGAGGCCGAG 60.968 60.000 0.00 0.00 0.00 4.63
380 381 0.324738 ATGACAGAAGAGGAGGCCGA 60.325 55.000 0.00 0.00 0.00 5.54
381 382 0.179089 CATGACAGAAGAGGAGGCCG 60.179 60.000 0.00 0.00 0.00 6.13
382 383 0.463474 GCATGACAGAAGAGGAGGCC 60.463 60.000 0.00 0.00 0.00 5.19
383 384 0.463474 GGCATGACAGAAGAGGAGGC 60.463 60.000 0.00 0.00 0.00 4.70
384 385 0.179936 GGGCATGACAGAAGAGGAGG 59.820 60.000 0.00 0.00 0.00 4.30
385 386 0.907486 TGGGCATGACAGAAGAGGAG 59.093 55.000 0.00 0.00 0.00 3.69
386 387 1.211212 CATGGGCATGACAGAAGAGGA 59.789 52.381 0.00 0.00 41.20 3.71
387 388 1.064906 ACATGGGCATGACAGAAGAGG 60.065 52.381 0.00 0.00 41.20 3.69
388 389 2.286872 GACATGGGCATGACAGAAGAG 58.713 52.381 0.00 0.00 41.20 2.85
389 390 1.629861 TGACATGGGCATGACAGAAGA 59.370 47.619 0.00 0.00 41.20 2.87
390 391 1.741706 GTGACATGGGCATGACAGAAG 59.258 52.381 0.00 0.00 42.28 2.85
391 392 1.352017 AGTGACATGGGCATGACAGAA 59.648 47.619 0.00 0.00 42.28 3.02
392 393 0.986527 AGTGACATGGGCATGACAGA 59.013 50.000 0.00 0.00 42.28 3.41
393 394 1.092348 CAGTGACATGGGCATGACAG 58.908 55.000 0.00 0.00 42.28 3.51
394 395 0.401356 ACAGTGACATGGGCATGACA 59.599 50.000 0.00 0.00 41.20 3.58
395 396 1.200716 CAACAGTGACATGGGCATGAC 59.799 52.381 0.00 0.00 41.20 3.06
396 397 1.202915 ACAACAGTGACATGGGCATGA 60.203 47.619 0.00 0.00 41.20 3.07
397 398 1.200716 GACAACAGTGACATGGGCATG 59.799 52.381 0.00 0.00 44.15 4.06
398 399 1.202915 TGACAACAGTGACATGGGCAT 60.203 47.619 0.00 0.00 0.00 4.40
399 400 0.182299 TGACAACAGTGACATGGGCA 59.818 50.000 0.00 0.00 0.00 5.36
400 401 0.877071 CTGACAACAGTGACATGGGC 59.123 55.000 0.00 0.00 39.11 5.36
401 402 0.877071 GCTGACAACAGTGACATGGG 59.123 55.000 0.00 0.00 45.04 4.00
402 403 1.534163 CAGCTGACAACAGTGACATGG 59.466 52.381 8.42 0.00 45.04 3.66
403 404 2.216046 ACAGCTGACAACAGTGACATG 58.784 47.619 23.35 0.00 45.04 3.21
404 405 2.158914 TGACAGCTGACAACAGTGACAT 60.159 45.455 23.35 0.00 45.04 3.06
405 406 1.206849 TGACAGCTGACAACAGTGACA 59.793 47.619 23.35 1.85 45.04 3.58
406 407 1.939974 TGACAGCTGACAACAGTGAC 58.060 50.000 23.35 0.00 45.04 3.67
407 408 2.759191 GATGACAGCTGACAACAGTGA 58.241 47.619 23.35 0.00 45.04 3.41
408 409 1.458445 CGATGACAGCTGACAACAGTG 59.542 52.381 23.35 6.42 45.04 3.66
409 410 1.069204 ACGATGACAGCTGACAACAGT 59.931 47.619 23.35 17.84 45.04 3.55
410 411 1.458445 CACGATGACAGCTGACAACAG 59.542 52.381 23.35 17.22 45.91 3.16
411 412 1.202521 ACACGATGACAGCTGACAACA 60.203 47.619 23.35 14.50 0.00 3.33
412 413 1.193203 CACACGATGACAGCTGACAAC 59.807 52.381 23.35 18.24 0.00 3.32
413 414 1.501169 CACACGATGACAGCTGACAA 58.499 50.000 23.35 5.39 0.00 3.18
414 415 0.319813 CCACACGATGACAGCTGACA 60.320 55.000 23.35 21.92 0.00 3.58
415 416 0.038251 TCCACACGATGACAGCTGAC 60.038 55.000 23.35 15.92 0.00 3.51
416 417 0.678950 TTCCACACGATGACAGCTGA 59.321 50.000 23.35 0.00 0.00 4.26
417 418 1.073964 CTTCCACACGATGACAGCTG 58.926 55.000 13.48 13.48 0.00 4.24
418 419 0.036952 CCTTCCACACGATGACAGCT 60.037 55.000 0.00 0.00 0.00 4.24
419 420 1.021390 CCCTTCCACACGATGACAGC 61.021 60.000 0.00 0.00 0.00 4.40
420 421 0.608130 TCCCTTCCACACGATGACAG 59.392 55.000 0.00 0.00 0.00 3.51
421 422 0.608130 CTCCCTTCCACACGATGACA 59.392 55.000 0.00 0.00 0.00 3.58
422 423 0.895530 TCTCCCTTCCACACGATGAC 59.104 55.000 0.00 0.00 0.00 3.06
423 424 1.550524 CTTCTCCCTTCCACACGATGA 59.449 52.381 0.00 0.00 0.00 2.92
424 425 1.550524 TCTTCTCCCTTCCACACGATG 59.449 52.381 0.00 0.00 0.00 3.84
425 426 1.827969 CTCTTCTCCCTTCCACACGAT 59.172 52.381 0.00 0.00 0.00 3.73
426 427 1.257743 CTCTTCTCCCTTCCACACGA 58.742 55.000 0.00 0.00 0.00 4.35
427 428 0.390472 GCTCTTCTCCCTTCCACACG 60.390 60.000 0.00 0.00 0.00 4.49
428 429 0.390472 CGCTCTTCTCCCTTCCACAC 60.390 60.000 0.00 0.00 0.00 3.82
429 430 0.541998 TCGCTCTTCTCCCTTCCACA 60.542 55.000 0.00 0.00 0.00 4.17
430 431 0.174617 CTCGCTCTTCTCCCTTCCAC 59.825 60.000 0.00 0.00 0.00 4.02
431 432 0.972983 CCTCGCTCTTCTCCCTTCCA 60.973 60.000 0.00 0.00 0.00 3.53
432 433 0.684805 TCCTCGCTCTTCTCCCTTCC 60.685 60.000 0.00 0.00 0.00 3.46
433 434 0.744281 CTCCTCGCTCTTCTCCCTTC 59.256 60.000 0.00 0.00 0.00 3.46
437 438 3.500680 CACTATACTCCTCGCTCTTCTCC 59.499 52.174 0.00 0.00 0.00 3.71
441 442 3.300239 ACCACTATACTCCTCGCTCTT 57.700 47.619 0.00 0.00 0.00 2.85
446 447 3.065655 CCTCGTACCACTATACTCCTCG 58.934 54.545 0.00 0.00 0.00 4.63
450 451 3.814283 CAGTCCCTCGTACCACTATACTC 59.186 52.174 0.00 0.00 0.00 2.59
451 452 3.201708 ACAGTCCCTCGTACCACTATACT 59.798 47.826 0.00 0.00 0.00 2.12
452 453 3.314635 CACAGTCCCTCGTACCACTATAC 59.685 52.174 0.00 0.00 0.00 1.47
453 454 3.200605 TCACAGTCCCTCGTACCACTATA 59.799 47.826 0.00 0.00 0.00 1.31
454 455 2.025605 TCACAGTCCCTCGTACCACTAT 60.026 50.000 0.00 0.00 0.00 2.12
455 456 1.352017 TCACAGTCCCTCGTACCACTA 59.648 52.381 0.00 0.00 0.00 2.74
471 472 5.835113 TCGATACATCATCTCTTGTCACA 57.165 39.130 0.00 0.00 0.00 3.58
585 586 3.818787 CGTCCTGCCAAGCCATGC 61.819 66.667 0.00 0.00 0.00 4.06
586 587 3.818787 GCGTCCTGCCAAGCCATG 61.819 66.667 0.00 0.00 37.76 3.66
653 655 9.937175 CTTTCTTTCTTTCTTTAATCTTCGTGT 57.063 29.630 0.00 0.00 0.00 4.49
668 670 4.342378 GGGTGGCTCTTTCTTTCTTTCTTT 59.658 41.667 0.00 0.00 0.00 2.52
678 680 4.394712 CCGCGGGTGGCTCTTTCT 62.395 66.667 20.10 0.00 40.44 2.52
705 707 2.372690 CCGAGGCAGTTGTTCGTCG 61.373 63.158 0.00 0.00 39.43 5.12
751 756 1.396996 CAGTGGCGGTGTACATTAAGC 59.603 52.381 0.00 2.57 0.00 3.09
752 757 2.006888 CCAGTGGCGGTGTACATTAAG 58.993 52.381 0.00 0.00 0.00 1.85
753 758 1.339247 CCCAGTGGCGGTGTACATTAA 60.339 52.381 2.61 0.00 0.00 1.40
787 792 1.013323 GCACGCTTGTCGCTAATCG 60.013 57.895 0.00 0.00 43.23 3.34
925 936 2.123897 AGGAGCGAGGGAGAGAGC 60.124 66.667 0.00 0.00 0.00 4.09
941 987 1.524008 GGTTCTTGGGTTTGGGCGAG 61.524 60.000 0.00 0.00 0.00 5.03
971 1020 4.504916 CTCTCGGGTCCTGCGCTG 62.505 72.222 9.73 8.47 0.00 5.18
972 1021 4.742649 TCTCTCGGGTCCTGCGCT 62.743 66.667 9.73 0.00 0.00 5.92
990 1039 3.118075 CCTCCTCTTCCATTCCTTTCTCC 60.118 52.174 0.00 0.00 0.00 3.71
1045 1094 2.579201 CAGGTCCTCGCCGTTCAT 59.421 61.111 0.00 0.00 0.00 2.57
1268 1329 2.586425 AGAATGTAAATCGGGCCATGG 58.414 47.619 7.63 7.63 0.00 3.66
1270 1331 2.958355 CCAAGAATGTAAATCGGGCCAT 59.042 45.455 4.39 0.00 0.00 4.40
1297 1358 2.104963 AGGATATGGCTCGGTTCCTTTC 59.895 50.000 0.00 0.00 32.94 2.62
1298 1359 2.127708 AGGATATGGCTCGGTTCCTTT 58.872 47.619 0.00 0.00 32.94 3.11
1299 1360 1.417890 CAGGATATGGCTCGGTTCCTT 59.582 52.381 0.00 0.00 34.59 3.36
1300 1361 1.051812 CAGGATATGGCTCGGTTCCT 58.948 55.000 0.00 0.00 37.29 3.36
1301 1362 0.759346 ACAGGATATGGCTCGGTTCC 59.241 55.000 0.00 0.00 0.00 3.62
1306 1367 1.202568 TGCAGAACAGGATATGGCTCG 60.203 52.381 0.00 0.00 0.00 5.03
1308 1369 2.634815 CTGCAGAACAGGATATGGCT 57.365 50.000 8.42 0.00 43.19 4.75
1323 1384 4.397730 TGCAAGAACAAAAACTAGTCTGCA 59.602 37.500 0.00 0.00 0.00 4.41
1329 1390 7.016361 AGTACTGTGCAAGAACAAAAACTAG 57.984 36.000 0.00 0.00 0.00 2.57
1332 1393 6.468000 GTGTAGTACTGTGCAAGAACAAAAAC 59.532 38.462 5.39 0.00 0.00 2.43
1357 1418 2.480759 CCAAAGTACAGGGATACGGTCG 60.481 54.545 0.00 0.00 37.60 4.79
1368 1431 4.625742 CGAACTATGTGACCCAAAGTACAG 59.374 45.833 0.00 0.00 0.00 2.74
1369 1432 4.039488 ACGAACTATGTGACCCAAAGTACA 59.961 41.667 0.00 0.00 0.00 2.90
1370 1433 4.563061 ACGAACTATGTGACCCAAAGTAC 58.437 43.478 0.00 0.00 0.00 2.73
1429 1494 1.444212 CATTTTGCCGCCGAACCAG 60.444 57.895 0.00 0.00 0.00 4.00
1432 1497 3.171911 CGCATTTTGCCGCCGAAC 61.172 61.111 0.00 0.00 41.12 3.95
1442 1507 4.287238 CGGATTTTACTAGCCGCATTTT 57.713 40.909 0.00 0.00 37.08 1.82
1467 1533 6.767456 AGAGAATGAAGAGAAACATCAGTGT 58.233 36.000 0.00 0.00 41.28 3.55
1512 1578 0.457337 CTTCTGCAGGCGGAAAATGC 60.457 55.000 15.13 0.00 40.36 3.56
1531 1597 0.815213 TGCACACAGTCTGGTTCTGC 60.815 55.000 4.53 5.70 36.50 4.26
1549 1615 0.460987 GCTCGTCTTCAGTCCCCATG 60.461 60.000 0.00 0.00 0.00 3.66
1550 1616 0.904865 TGCTCGTCTTCAGTCCCCAT 60.905 55.000 0.00 0.00 0.00 4.00
1551 1617 1.118965 TTGCTCGTCTTCAGTCCCCA 61.119 55.000 0.00 0.00 0.00 4.96
1671 1737 2.877168 AGCTTCAAATCTGCGATGATCC 59.123 45.455 0.00 0.00 0.00 3.36
1721 1787 2.486982 TCTCTTCTTCAGCTTGCAATGC 59.513 45.455 0.00 6.17 37.24 3.56
1729 1795 2.097680 GCTGCTTCTCTTCTTCAGCT 57.902 50.000 5.40 0.00 44.71 4.24
1778 1847 2.030540 CAGGTTCTGCTGTGGACAATTG 60.031 50.000 3.24 3.24 0.00 2.32
1781 1850 0.836606 TCAGGTTCTGCTGTGGACAA 59.163 50.000 0.00 0.00 0.00 3.18
1832 1901 4.248859 TCTGTTATCTGCACTTCTTCTGC 58.751 43.478 0.00 0.00 35.03 4.26
1840 1912 2.182827 TCAGGCTCTGTTATCTGCACT 58.817 47.619 2.68 0.00 32.61 4.40
1841 1913 2.680312 TCAGGCTCTGTTATCTGCAC 57.320 50.000 2.68 0.00 32.61 4.57
1842 1914 2.568956 ACTTCAGGCTCTGTTATCTGCA 59.431 45.455 2.68 0.00 32.61 4.41
1843 1915 2.935201 CACTTCAGGCTCTGTTATCTGC 59.065 50.000 2.68 0.00 32.61 4.26
1844 1916 4.462508 TCACTTCAGGCTCTGTTATCTG 57.537 45.455 2.68 0.00 32.61 2.90
1845 1917 4.622695 GCTTCACTTCAGGCTCTGTTATCT 60.623 45.833 2.68 0.00 32.61 1.98
1846 1918 3.620821 GCTTCACTTCAGGCTCTGTTATC 59.379 47.826 2.68 0.00 32.61 1.75
1847 1919 3.008375 TGCTTCACTTCAGGCTCTGTTAT 59.992 43.478 2.68 0.00 32.61 1.89
1848 1920 2.368548 TGCTTCACTTCAGGCTCTGTTA 59.631 45.455 2.68 0.00 32.61 2.41
1849 1921 1.141657 TGCTTCACTTCAGGCTCTGTT 59.858 47.619 2.68 0.00 32.61 3.16
1850 1922 0.761187 TGCTTCACTTCAGGCTCTGT 59.239 50.000 2.68 0.00 32.61 3.41
1855 1927 1.874562 CTGCTGCTTCACTTCAGGC 59.125 57.895 0.00 0.00 0.00 4.85
1863 1935 1.771783 TTCCTCAGGCTGCTGCTTCA 61.772 55.000 15.64 0.00 39.59 3.02
1864 1936 0.607489 TTTCCTCAGGCTGCTGCTTC 60.607 55.000 15.64 0.00 39.59 3.86
1881 1953 4.877378 TCAGCTCCAGAATTTGCATTTT 57.123 36.364 0.00 0.00 0.00 1.82
1892 2021 1.208776 CATGTCCACATCAGCTCCAGA 59.791 52.381 0.00 0.00 33.61 3.86
1915 2044 0.242825 CTTGTTCGTCTAGACCGGCA 59.757 55.000 17.23 10.05 0.00 5.69
2050 2179 1.675552 TCTCCGTCGCTATGTCATGA 58.324 50.000 0.00 0.00 0.00 3.07
2051 2180 2.492019 TTCTCCGTCGCTATGTCATG 57.508 50.000 0.00 0.00 0.00 3.07
2053 2182 1.816835 ACTTTCTCCGTCGCTATGTCA 59.183 47.619 0.00 0.00 0.00 3.58
2059 2188 0.038159 CCAAGACTTTCTCCGTCGCT 60.038 55.000 0.00 0.00 36.53 4.93
2094 2223 1.519455 GCATCCGAGGACACCTTCG 60.519 63.158 0.00 0.00 31.76 3.79
2110 2239 1.494721 AGAGAAGAAACCAAGGTGGCA 59.505 47.619 0.00 0.00 42.67 4.92
2135 2264 0.463620 GTGGTCTGATCCAGCTCCTC 59.536 60.000 0.00 0.00 38.23 3.71
2146 2275 0.319900 GCAGCTTCTTCGTGGTCTGA 60.320 55.000 0.00 0.00 0.00 3.27
2156 2285 0.250038 TTCAGCGTCTGCAGCTTCTT 60.250 50.000 9.47 0.00 44.06 2.52
2239 2368 3.311167 TTCCTGAGCTGCTCTATCTCT 57.689 47.619 28.04 0.00 0.00 3.10
2278 2407 3.311871 CAGCTAACATCATGGCTTCAGAC 59.688 47.826 0.00 0.00 32.30 3.51
2323 2452 0.108186 CTTCAGCAGTGCCGATGGTA 60.108 55.000 12.58 0.00 0.00 3.25
2389 2518 0.997932 CAGCTAGTGCAAGAGCTTCG 59.002 55.000 18.56 7.30 46.99 3.79
2449 2578 1.997311 TCCATCTGTGCCCTGGAGG 60.997 63.158 0.00 0.00 34.17 4.30
2472 2601 3.833070 GGAGTACTCTTCCACTGAAAGGA 59.167 47.826 21.88 0.00 39.30 3.36
2520 2649 3.401033 TGTTCCTTGAGCTTTCATCGA 57.599 42.857 0.00 0.00 0.00 3.59
2560 2689 1.621317 TGGTTGGCTTCGTCTACATGA 59.379 47.619 0.00 0.00 0.00 3.07
2566 2695 2.270352 TTGATTGGTTGGCTTCGTCT 57.730 45.000 0.00 0.00 0.00 4.18
2590 2719 3.088532 CTCTAGCCTTGTGAGTGACTCT 58.911 50.000 14.42 0.00 0.00 3.24
2635 2764 2.481952 CTCTTGCAGTGCCTTCTTACAC 59.518 50.000 13.72 0.00 37.05 2.90
2638 2767 1.611673 GCCTCTTGCAGTGCCTTCTTA 60.612 52.381 13.72 0.00 40.77 2.10
2803 2932 1.276138 ACGATGTCCATGCAGTGAGAA 59.724 47.619 0.00 0.00 0.00 2.87
2822 2951 3.390135 TGGAGTTGTCTGAAACATCGAC 58.610 45.455 0.00 0.00 37.82 4.20
2923 3052 2.615447 AGTTTCACTCGTACTCGTGTCA 59.385 45.455 10.09 0.00 40.89 3.58
3061 3190 4.183865 GCTTTGCCAAGAAAACTGAAAGT 58.816 39.130 0.86 0.00 40.27 2.66
3100 3229 4.222588 CAGTTCTCATCTGACCCTCTCTTT 59.777 45.833 0.00 0.00 35.20 2.52
3169 3299 2.443255 ACACAAGACATGGAAAGAGGGT 59.557 45.455 0.00 0.00 0.00 4.34
3174 3304 3.885297 ACAGGAACACAAGACATGGAAAG 59.115 43.478 0.00 0.00 0.00 2.62
3185 3315 7.181305 TCCTAGGAACATTATACAGGAACACAA 59.819 37.037 9.71 0.00 0.00 3.33
3248 3382 4.406648 TGAACTGGTACATGGAGCTATG 57.593 45.455 8.91 1.52 38.20 2.23
3249 3383 4.655649 TGATGAACTGGTACATGGAGCTAT 59.344 41.667 8.91 0.00 38.20 2.97
3308 3442 9.574516 TTCATAGAGCACATGATACTAGTCTAA 57.425 33.333 0.00 0.00 32.63 2.10
3309 3443 9.004717 GTTCATAGAGCACATGATACTAGTCTA 57.995 37.037 0.00 0.00 32.63 2.59
3310 3444 7.503902 TGTTCATAGAGCACATGATACTAGTCT 59.496 37.037 0.00 0.00 32.63 3.24
3311 3445 7.652727 TGTTCATAGAGCACATGATACTAGTC 58.347 38.462 0.00 0.00 32.63 2.59
3357 3500 4.858680 GGCTCCGCCCCTGCTAAC 62.859 72.222 0.00 0.00 44.06 2.34
3990 4249 0.809385 TTCTCTTCCGACTAGCCGTG 59.191 55.000 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.