Multiple sequence alignment - TraesCS2A01G106200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G106200 chr2A 100.000 2825 0 0 1 2825 58459480 58462304 0.000000e+00 5217.0
1 TraesCS2A01G106200 chr2D 91.589 2259 118 28 299 2543 57264215 57266415 0.000000e+00 3053.0
2 TraesCS2A01G106200 chr2D 95.302 298 13 1 2528 2825 57266431 57266727 3.290000e-129 472.0
3 TraesCS2A01G106200 chr2D 90.000 70 4 2 2005 2073 57297811 57297878 1.390000e-13 87.9
4 TraesCS2A01G106200 chr2B 93.224 1402 74 9 588 1985 90571209 90572593 0.000000e+00 2043.0
5 TraesCS2A01G106200 chr2B 95.294 340 16 0 2204 2543 90590989 90591328 8.900000e-150 540.0
6 TraesCS2A01G106200 chr2B 95.294 340 16 0 2204 2543 90591812 90592151 8.900000e-150 540.0
7 TraesCS2A01G106200 chr2B 95.000 340 17 0 2204 2543 90574195 90574534 4.140000e-148 534.0
8 TraesCS2A01G106200 chr2B 95.000 340 17 0 2204 2543 90612740 90613079 4.140000e-148 534.0
9 TraesCS2A01G106200 chr2B 95.000 340 16 1 2204 2543 90613561 90613899 1.490000e-147 532.0
10 TraesCS2A01G106200 chr2B 94.706 340 18 0 2204 2543 90593432 90593771 1.930000e-146 529.0
11 TraesCS2A01G106200 chr2B 94.706 340 18 0 2204 2543 90598360 90598699 1.930000e-146 529.0
12 TraesCS2A01G106200 chr2B 95.468 331 15 0 2204 2534 90599162 90599492 1.930000e-146 529.0
13 TraesCS2A01G106200 chr2B 94.706 340 17 1 2204 2543 90590168 90590506 6.930000e-146 527.0
14 TraesCS2A01G106200 chr2B 94.932 296 14 1 2528 2823 90574549 90574843 1.980000e-126 462.0
15 TraesCS2A01G106200 chr2B 82.772 534 54 17 3 529 90570686 90571188 2.580000e-120 442.0
16 TraesCS2A01G106200 chr2B 97.802 91 0 1 2005 2095 90572580 90572668 3.770000e-34 156.0
17 TraesCS2A01G106200 chr3B 79.666 718 107 19 997 1713 124388814 124389493 5.470000e-132 481.0
18 TraesCS2A01G106200 chr7B 78.860 719 114 18 997 1713 704264586 704265268 4.290000e-123 451.0
19 TraesCS2A01G106200 chr6B 78.442 719 117 18 997 1713 222857218 222856536 4.320000e-118 435.0
20 TraesCS2A01G106200 chr3D 81.452 496 83 7 997 1491 114082966 114082479 5.670000e-107 398.0
21 TraesCS2A01G106200 chr4A 87.500 120 15 0 1594 1713 714048348 714048229 3.790000e-29 139.0
22 TraesCS2A01G106200 chr1B 91.549 71 4 2 2757 2825 74648606 74648536 2.320000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G106200 chr2A 58459480 58462304 2824 False 5217.0 5217 100.0000 1 2825 1 chr2A.!!$F1 2824
1 TraesCS2A01G106200 chr2D 57264215 57266727 2512 False 1762.5 3053 93.4455 299 2825 2 chr2D.!!$F2 2526
2 TraesCS2A01G106200 chr2B 90570686 90574843 4157 False 727.4 2043 92.7460 3 2823 5 chr2B.!!$F1 2820
3 TraesCS2A01G106200 chr2B 90590168 90593771 3603 False 534.0 540 95.0000 2204 2543 4 chr2B.!!$F2 339
4 TraesCS2A01G106200 chr2B 90612740 90613899 1159 False 533.0 534 95.0000 2204 2543 2 chr2B.!!$F4 339
5 TraesCS2A01G106200 chr2B 90598360 90599492 1132 False 529.0 529 95.0870 2204 2543 2 chr2B.!!$F3 339
6 TraesCS2A01G106200 chr3B 124388814 124389493 679 False 481.0 481 79.6660 997 1713 1 chr3B.!!$F1 716
7 TraesCS2A01G106200 chr7B 704264586 704265268 682 False 451.0 451 78.8600 997 1713 1 chr7B.!!$F1 716
8 TraesCS2A01G106200 chr6B 222856536 222857218 682 True 435.0 435 78.4420 997 1713 1 chr6B.!!$R1 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.037734 CTTTGGAAGGGGTACGGCTT 59.962 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1843 1881 1.068588 GGACAAACTGAAAACCCCAGC 59.931 52.381 0.0 0.0 35.14 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.836007 AGTGATTCTGGGTTTTCTTCTCTTTT 59.164 34.615 0.00 0.00 0.00 2.27
34 35 7.343057 AGTGATTCTGGGTTTTCTTCTCTTTTT 59.657 33.333 0.00 0.00 0.00 1.94
54 55 3.967332 TTCTACTTTGGAAGGGGTACG 57.033 47.619 0.00 0.00 0.00 3.67
55 56 2.181975 TCTACTTTGGAAGGGGTACGG 58.818 52.381 0.00 0.00 0.00 4.02
58 59 0.037734 CTTTGGAAGGGGTACGGCTT 59.962 55.000 0.00 0.00 0.00 4.35
59 60 1.279846 CTTTGGAAGGGGTACGGCTTA 59.720 52.381 0.00 0.00 0.00 3.09
173 187 6.581171 ACAATGTCCAAATTCTCTTTCCTC 57.419 37.500 0.00 0.00 0.00 3.71
184 198 9.243105 CAAATTCTCTTTCCTCCCACTTTTATA 57.757 33.333 0.00 0.00 0.00 0.98
191 205 9.429109 TCTTTCCTCCCACTTTTATAAAAACTT 57.571 29.630 11.62 0.00 0.00 2.66
213 227 6.260936 ACTTAGATTATTGGGTCGCTCATTTG 59.739 38.462 0.00 0.00 0.00 2.32
216 230 4.695217 TTATTGGGTCGCTCATTTGAAC 57.305 40.909 0.00 0.00 0.00 3.18
217 231 1.974265 TTGGGTCGCTCATTTGAACA 58.026 45.000 0.00 0.00 0.00 3.18
224 238 1.666888 CGCTCATTTGAACAGCCCAAC 60.667 52.381 0.00 0.00 0.00 3.77
259 273 8.726650 TGTATTGAACACGATTCAAAGATTTG 57.273 30.769 18.69 0.00 41.16 2.32
287 301 2.435372 TTGAAAGACCTTGTGCCACT 57.565 45.000 0.00 0.00 0.00 4.00
391 411 9.617975 TTTTTAGCAACAAAGAAAACCATTTTG 57.382 25.926 0.00 0.00 37.71 2.44
393 413 6.421377 AGCAACAAAGAAAACCATTTTGTC 57.579 33.333 2.74 0.00 42.40 3.18
394 414 5.353956 AGCAACAAAGAAAACCATTTTGTCC 59.646 36.000 2.74 0.00 42.40 4.02
395 415 5.353956 GCAACAAAGAAAACCATTTTGTCCT 59.646 36.000 2.74 0.00 42.40 3.85
437 458 3.760684 ACACATCAAAGGAATTCTCAGGC 59.239 43.478 5.23 0.00 0.00 4.85
438 459 3.012518 ACATCAAAGGAATTCTCAGGCG 58.987 45.455 5.23 0.00 0.00 5.52
529 558 1.663173 GACGCCTCCTCCTAGCATC 59.337 63.158 0.00 0.00 0.00 3.91
545 579 2.297597 AGCATCACGATTACTCTAGCCC 59.702 50.000 0.00 0.00 0.00 5.19
546 580 2.610727 GCATCACGATTACTCTAGCCCC 60.611 54.545 0.00 0.00 0.00 5.80
547 581 1.315690 TCACGATTACTCTAGCCCCG 58.684 55.000 0.00 0.00 0.00 5.73
573 607 1.373999 GGGCTGCATCTAGCTAGCG 60.374 63.158 16.35 10.43 43.64 4.26
632 666 9.483916 TTTTTCTGATTATCGTCAAGTAAGTCA 57.516 29.630 0.00 0.00 0.00 3.41
649 683 4.706842 AGTCATCATATTAAACCCCGCT 57.293 40.909 0.00 0.00 0.00 5.52
737 771 3.191371 GCCACCTGTAATTCCAGACTTTG 59.809 47.826 0.00 0.00 34.23 2.77
738 772 4.651778 CCACCTGTAATTCCAGACTTTGA 58.348 43.478 0.00 0.00 34.23 2.69
739 773 4.697352 CCACCTGTAATTCCAGACTTTGAG 59.303 45.833 0.00 0.00 34.23 3.02
740 774 4.697352 CACCTGTAATTCCAGACTTTGAGG 59.303 45.833 0.00 0.00 34.23 3.86
743 777 4.985538 TGTAATTCCAGACTTTGAGGCTT 58.014 39.130 0.00 0.00 24.26 4.35
779 813 1.118965 TCCCACTTTGCTCACCTCGA 61.119 55.000 0.00 0.00 0.00 4.04
831 865 1.811558 CGCCATCACCACCCATAAGAG 60.812 57.143 0.00 0.00 0.00 2.85
880 915 2.122369 ATCGGTCCTGGATCCCCC 60.122 66.667 9.90 3.03 0.00 5.40
959 994 2.125512 CCGGCGACCAAGAAGAGG 60.126 66.667 9.30 0.00 0.00 3.69
1812 1850 0.317103 CATCCGAGTCGTCCGATGAC 60.317 60.000 19.48 12.17 39.48 3.06
1831 1869 4.072088 CGACTGTTTGACCGCGCC 62.072 66.667 0.00 0.00 0.00 6.53
1865 1903 1.007238 TGGGGTTTTCAGTTTGTCCCA 59.993 47.619 0.00 0.00 40.29 4.37
1890 1928 1.607612 GGTGGACCCGGATGTGATT 59.392 57.895 0.73 0.00 0.00 2.57
1958 1996 4.160252 ACTGTTTCATGCTTTTGTCCAAGT 59.840 37.500 0.00 0.00 0.00 3.16
1971 2009 4.587584 TGTCCAAGTCGTTGTATGTACA 57.412 40.909 0.00 0.00 30.95 2.90
1972 2010 4.300803 TGTCCAAGTCGTTGTATGTACAC 58.699 43.478 0.00 0.00 35.64 2.90
1973 2011 3.676646 GTCCAAGTCGTTGTATGTACACC 59.323 47.826 0.00 0.00 35.64 4.16
1974 2012 3.575256 TCCAAGTCGTTGTATGTACACCT 59.425 43.478 0.00 0.00 35.64 4.00
1975 2013 3.924686 CCAAGTCGTTGTATGTACACCTC 59.075 47.826 0.00 0.00 35.64 3.85
1976 2014 4.321750 CCAAGTCGTTGTATGTACACCTCT 60.322 45.833 0.00 0.00 35.64 3.69
1977 2015 5.227908 CAAGTCGTTGTATGTACACCTCTT 58.772 41.667 0.00 0.00 35.64 2.85
1978 2016 5.464030 AGTCGTTGTATGTACACCTCTTT 57.536 39.130 0.00 0.00 35.64 2.52
1979 2017 5.850614 AGTCGTTGTATGTACACCTCTTTT 58.149 37.500 0.00 0.00 35.64 2.27
1980 2018 6.285990 AGTCGTTGTATGTACACCTCTTTTT 58.714 36.000 0.00 0.00 35.64 1.94
1981 2019 6.423001 AGTCGTTGTATGTACACCTCTTTTTC 59.577 38.462 0.00 0.00 35.64 2.29
1982 2020 5.697633 TCGTTGTATGTACACCTCTTTTTCC 59.302 40.000 0.00 0.00 35.64 3.13
1983 2021 5.699458 CGTTGTATGTACACCTCTTTTTCCT 59.301 40.000 0.00 0.00 35.64 3.36
1984 2022 6.347402 CGTTGTATGTACACCTCTTTTTCCTG 60.347 42.308 0.00 0.00 35.64 3.86
1985 2023 5.001232 TGTATGTACACCTCTTTTTCCTGC 58.999 41.667 0.00 0.00 0.00 4.85
1986 2024 3.857157 TGTACACCTCTTTTTCCTGCT 57.143 42.857 0.00 0.00 0.00 4.24
1987 2025 4.164843 TGTACACCTCTTTTTCCTGCTT 57.835 40.909 0.00 0.00 0.00 3.91
1988 2026 4.532834 TGTACACCTCTTTTTCCTGCTTT 58.467 39.130 0.00 0.00 0.00 3.51
1989 2027 4.953579 TGTACACCTCTTTTTCCTGCTTTT 59.046 37.500 0.00 0.00 0.00 2.27
1990 2028 5.420739 TGTACACCTCTTTTTCCTGCTTTTT 59.579 36.000 0.00 0.00 0.00 1.94
2037 2108 2.301009 TGTCTGAAGCATTGCTGAGAGA 59.699 45.455 12.82 12.07 39.62 3.10
2038 2109 2.931325 GTCTGAAGCATTGCTGAGAGAG 59.069 50.000 12.82 4.37 39.62 3.20
2121 2192 8.047310 CCAATAAATGAAGTAAGTACCACCTCT 58.953 37.037 0.00 0.00 0.00 3.69
2126 2527 4.523173 TGAAGTAAGTACCACCTCTGTCTG 59.477 45.833 0.00 0.00 0.00 3.51
2169 3316 3.130693 AGACCAATGGTAGTAGCTTCGAC 59.869 47.826 4.23 0.00 35.25 4.20
2170 3317 2.167900 ACCAATGGTAGTAGCTTCGACC 59.832 50.000 14.47 14.47 32.11 4.79
2171 3318 2.483188 CCAATGGTAGTAGCTTCGACCC 60.483 54.545 17.75 4.93 33.26 4.46
2172 3319 1.411041 ATGGTAGTAGCTTCGACCCC 58.589 55.000 17.75 2.98 33.26 4.95
2173 3320 0.685458 TGGTAGTAGCTTCGACCCCC 60.685 60.000 17.75 2.66 33.26 5.40
2200 3347 2.094659 GCGCGCTTGAAGCTCTACA 61.095 57.895 26.67 0.00 39.60 2.74
2223 3716 2.225255 GCTCTGCCTTTGTTTCACTCTC 59.775 50.000 0.00 0.00 0.00 3.20
2229 3722 3.669536 CCTTTGTTTCACTCTCTCCTCC 58.330 50.000 0.00 0.00 0.00 4.30
2266 3759 7.502060 TGTATTTCTTCTCCCTCTCAATCTT 57.498 36.000 0.00 0.00 0.00 2.40
2343 3836 5.127356 CCTTGTCCCAGTCTTAGGTAGTTAG 59.873 48.000 0.00 0.00 0.00 2.34
2352 3845 7.718314 CCAGTCTTAGGTAGTTAGGTTGTTTTT 59.282 37.037 0.00 0.00 0.00 1.94
2446 3939 0.535102 AGGAGTTGGGTCTTTGCGTG 60.535 55.000 0.00 0.00 0.00 5.34
2449 3942 0.106918 AGTTGGGTCTTTGCGTGGAA 60.107 50.000 0.00 0.00 0.00 3.53
2521 4014 3.071167 ACGAAGTAGGGATGGATTTAGGC 59.929 47.826 0.00 0.00 41.94 3.93
2534 4058 7.180408 GGATGGATTTAGGCTAGTTAGATGGTA 59.820 40.741 0.00 0.00 0.00 3.25
2537 4061 6.819146 GGATTTAGGCTAGTTAGATGGTATGC 59.181 42.308 0.00 0.00 0.00 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.056407 AGAAAACCCAGAATCACTAATTAAGC 57.944 34.615 0.00 0.00 0.00 3.09
5 6 7.694093 AGAGAAGAAAACCCAGAATCACTAAT 58.306 34.615 0.00 0.00 0.00 1.73
33 34 3.008266 CCGTACCCCTTCCAAAGTAGAAA 59.992 47.826 0.00 0.00 0.00 2.52
34 35 2.568509 CCGTACCCCTTCCAAAGTAGAA 59.431 50.000 0.00 0.00 0.00 2.10
44 45 3.349927 ACAAATTAAGCCGTACCCCTTC 58.650 45.455 0.00 0.00 0.00 3.46
45 46 3.444792 ACAAATTAAGCCGTACCCCTT 57.555 42.857 0.00 0.00 0.00 3.95
47 48 3.426560 CGAAACAAATTAAGCCGTACCCC 60.427 47.826 0.00 0.00 0.00 4.95
48 49 3.189080 ACGAAACAAATTAAGCCGTACCC 59.811 43.478 0.00 0.00 0.00 3.69
49 50 4.408993 ACGAAACAAATTAAGCCGTACC 57.591 40.909 0.00 0.00 0.00 3.34
50 51 6.138088 AGAAACGAAACAAATTAAGCCGTAC 58.862 36.000 0.00 0.00 0.00 3.67
51 52 6.303021 AGAAACGAAACAAATTAAGCCGTA 57.697 33.333 0.00 0.00 0.00 4.02
52 53 5.177725 AGAAACGAAACAAATTAAGCCGT 57.822 34.783 0.00 0.00 0.00 5.68
53 54 6.505039 AAAGAAACGAAACAAATTAAGCCG 57.495 33.333 0.00 0.00 0.00 5.52
54 55 7.901002 TGAAAAGAAACGAAACAAATTAAGCC 58.099 30.769 0.00 0.00 0.00 4.35
55 56 9.914923 AATGAAAAGAAACGAAACAAATTAAGC 57.085 25.926 0.00 0.00 0.00 3.09
151 163 5.105595 GGGAGGAAAGAGAATTTGGACATTG 60.106 44.000 0.00 0.00 0.00 2.82
184 198 6.657541 TGAGCGACCCAATAATCTAAGTTTTT 59.342 34.615 0.00 0.00 0.00 1.94
191 205 5.924356 TCAAATGAGCGACCCAATAATCTA 58.076 37.500 0.00 0.00 0.00 1.98
200 214 0.169009 GCTGTTCAAATGAGCGACCC 59.831 55.000 0.00 0.00 0.00 4.46
213 227 2.036346 AGAAATGCTTGTTGGGCTGTTC 59.964 45.455 0.00 0.00 0.00 3.18
216 230 1.342174 ACAGAAATGCTTGTTGGGCTG 59.658 47.619 0.00 0.00 0.00 4.85
217 231 1.708341 ACAGAAATGCTTGTTGGGCT 58.292 45.000 0.00 0.00 0.00 5.19
224 238 5.688823 TCGTGTTCAATACAGAAATGCTTG 58.311 37.500 0.00 0.00 37.45 4.01
259 273 6.035650 GGCACAAGGTCTTTCAAAAGTAAAAC 59.964 38.462 2.63 0.00 37.31 2.43
391 411 8.674607 TGTTCTTCTTTGTCTTTTCTTTAGGAC 58.325 33.333 0.00 0.00 0.00 3.85
393 413 8.458843 TGTGTTCTTCTTTGTCTTTTCTTTAGG 58.541 33.333 0.00 0.00 0.00 2.69
437 458 2.329690 CCCAGAGCGACGATCTCG 59.670 66.667 13.61 6.71 45.97 4.04
438 459 1.384989 TTCCCCAGAGCGACGATCTC 61.385 60.000 13.61 3.37 0.00 2.75
471 497 6.831769 AGCATCAACGTTCTTTGTATAACAG 58.168 36.000 0.00 0.00 0.00 3.16
487 513 1.265635 TGGTACGTGCAAAGCATCAAC 59.734 47.619 5.86 0.00 41.91 3.18
529 558 1.001597 GACGGGGCTAGAGTAATCGTG 60.002 57.143 0.00 0.00 0.00 4.35
570 604 2.831685 TGATGTAACAGTTGGTCGCT 57.168 45.000 0.00 0.00 0.00 4.93
573 607 9.774742 GATTAAGAAATGATGTAACAGTTGGTC 57.225 33.333 0.00 0.00 0.00 4.02
610 644 7.996385 TGATGACTTACTTGACGATAATCAGA 58.004 34.615 0.00 0.00 0.00 3.27
632 666 5.304686 TCTTCAGCGGGGTTTAATATGAT 57.695 39.130 0.00 0.00 0.00 2.45
649 683 6.293407 GGAAATATTTGGATTCGCGATCTTCA 60.293 38.462 10.88 2.29 35.02 3.02
740 774 1.648467 GGACATGGTCGGCTCAAAGC 61.648 60.000 0.00 0.00 41.46 3.51
743 777 1.596934 GAGGACATGGTCGGCTCAA 59.403 57.895 0.00 0.00 32.65 3.02
749 783 0.324943 AAAGTGGGAGGACATGGTCG 59.675 55.000 0.00 0.00 32.65 4.79
752 786 0.038744 AGCAAAGTGGGAGGACATGG 59.961 55.000 0.00 0.00 0.00 3.66
779 813 2.524300 GTGGTGTTCACGTACGCAT 58.476 52.632 16.72 0.00 36.56 4.73
831 865 4.646040 TGATGGATGATTGAAATGTGGGAC 59.354 41.667 0.00 0.00 0.00 4.46
867 902 4.500125 TCTTGGGGGATCCAGGAC 57.500 61.111 15.23 0.49 45.31 3.85
878 913 2.434359 GGTCGCGAAGGTCTTGGG 60.434 66.667 12.06 0.00 0.00 4.12
880 915 0.878523 TGTTGGTCGCGAAGGTCTTG 60.879 55.000 12.06 0.00 0.00 3.02
993 1028 2.443952 TCCCTCGGCATGGTCGAT 60.444 61.111 0.00 0.00 39.46 3.59
1548 1586 2.161486 GTCGCTGAGACGATGCACC 61.161 63.158 0.00 0.00 45.06 5.01
1788 1826 1.880894 GGACGACTCGGATGACACA 59.119 57.895 2.98 0.00 0.00 3.72
1812 1850 3.000080 GCGCGGTCAAACAGTCGAG 62.000 63.158 8.83 0.00 0.00 4.04
1841 1879 1.756538 ACAAACTGAAAACCCCAGCAG 59.243 47.619 0.00 0.00 35.14 4.24
1842 1880 1.754226 GACAAACTGAAAACCCCAGCA 59.246 47.619 0.00 0.00 35.14 4.41
1843 1881 1.068588 GGACAAACTGAAAACCCCAGC 59.931 52.381 0.00 0.00 35.14 4.85
1927 1965 4.590850 AAGCATGAAACAGTTTTCTCCC 57.409 40.909 0.00 0.00 41.64 4.30
1991 2029 4.846779 AAAAGAGATACCAGCGCAAAAA 57.153 36.364 11.47 0.00 0.00 1.94
1992 2030 4.320935 GGAAAAAGAGATACCAGCGCAAAA 60.321 41.667 11.47 0.00 0.00 2.44
1993 2031 3.190535 GGAAAAAGAGATACCAGCGCAAA 59.809 43.478 11.47 0.00 0.00 3.68
1994 2032 2.747446 GGAAAAAGAGATACCAGCGCAA 59.253 45.455 11.47 0.00 0.00 4.85
1995 2033 2.027192 AGGAAAAAGAGATACCAGCGCA 60.027 45.455 11.47 0.00 0.00 6.09
1996 2034 2.352960 CAGGAAAAAGAGATACCAGCGC 59.647 50.000 0.00 0.00 0.00 5.92
1997 2035 3.600388 ACAGGAAAAAGAGATACCAGCG 58.400 45.455 0.00 0.00 0.00 5.18
1998 2036 4.633565 CAGACAGGAAAAAGAGATACCAGC 59.366 45.833 0.00 0.00 0.00 4.85
1999 2037 6.042638 TCAGACAGGAAAAAGAGATACCAG 57.957 41.667 0.00 0.00 0.00 4.00
2000 2038 6.433847 TTCAGACAGGAAAAAGAGATACCA 57.566 37.500 0.00 0.00 0.00 3.25
2001 2039 5.352846 GCTTCAGACAGGAAAAAGAGATACC 59.647 44.000 0.00 0.00 0.00 2.73
2002 2040 5.934625 TGCTTCAGACAGGAAAAAGAGATAC 59.065 40.000 0.00 0.00 0.00 2.24
2003 2041 6.114187 TGCTTCAGACAGGAAAAAGAGATA 57.886 37.500 0.00 0.00 0.00 1.98
2037 2108 2.106511 TCTTTAGGTGCAGAACAAGCCT 59.893 45.455 0.00 0.00 0.00 4.58
2038 2109 2.504367 TCTTTAGGTGCAGAACAAGCC 58.496 47.619 0.00 0.00 0.00 4.35
2200 3347 2.555757 GAGTGAAACAAAGGCAGAGCAT 59.444 45.455 0.00 0.00 41.43 3.79
2223 3716 0.833287 ATCAACCGACCATGGAGGAG 59.167 55.000 28.82 21.55 41.22 3.69
2229 3722 5.586243 AGAAGAAATACATCAACCGACCATG 59.414 40.000 0.00 0.00 0.00 3.66
2266 3759 6.409704 CAACCAGATCTAGAAATGGAGAACA 58.590 40.000 25.64 0.00 36.62 3.18
2343 3836 7.384660 TCAAAGTCATATGCATGAAAAACAACC 59.615 33.333 10.16 0.00 42.79 3.77
2352 3845 5.300034 GGTGGATTCAAAGTCATATGCATGA 59.700 40.000 10.16 0.00 38.90 3.07
2380 3873 4.500117 CACTAACACAAGCACAAACATGTG 59.500 41.667 0.00 4.64 46.52 3.21
2383 3876 4.981806 ACACTAACACAAGCACAAACAT 57.018 36.364 0.00 0.00 0.00 2.71
2446 3939 6.930722 CCTACAAAAATCCCATGCATAATTCC 59.069 38.462 0.00 0.00 0.00 3.01
2449 3942 6.383726 ACACCTACAAAAATCCCATGCATAAT 59.616 34.615 0.00 0.00 0.00 1.28
2570 4629 1.895131 AGACCATCAGCGGCAAATTTT 59.105 42.857 1.45 0.00 0.00 1.82
2579 4638 4.902443 TCTAACTAGAAGACCATCAGCG 57.098 45.455 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.