Multiple sequence alignment - TraesCS2A01G103600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G103600 chr2A 100.000 2576 0 0 1 2576 57177292 57174717 0.000000e+00 4758.0
1 TraesCS2A01G103600 chr2A 95.288 191 7 2 2063 2251 718110612 718110422 4.170000e-78 302.0
2 TraesCS2A01G103600 chr2D 92.670 1337 34 25 768 2059 55765059 55763742 0.000000e+00 1868.0
3 TraesCS2A01G103600 chr2D 92.531 241 8 1 2346 2576 55763514 55763274 1.140000e-88 337.0
4 TraesCS2A01G103600 chr2D 79.365 504 56 23 36 503 422096324 422095833 6.920000e-81 311.0
5 TraesCS2A01G103600 chr2D 92.045 176 9 3 808 983 39001488 39001318 2.560000e-60 243.0
6 TraesCS2A01G103600 chr2D 74.635 548 65 24 10 518 649503208 649502696 9.470000e-40 174.0
7 TraesCS2A01G103600 chr2D 97.030 101 3 0 2246 2346 55763749 55763649 1.230000e-38 171.0
8 TraesCS2A01G103600 chr2B 93.327 1139 32 18 800 1900 88435224 88434092 0.000000e+00 1642.0
9 TraesCS2A01G103600 chr2B 85.062 241 26 3 2346 2576 88433732 88433492 1.190000e-58 237.0
10 TraesCS2A01G103600 chr2B 76.263 198 37 10 301 492 23371834 23371641 2.110000e-16 97.1
11 TraesCS2A01G103600 chr2B 96.552 58 2 0 801 858 88436764 88436707 2.110000e-16 97.1
12 TraesCS2A01G103600 chr2B 90.909 44 4 0 1961 2004 18220759 18220716 2.770000e-05 60.2
13 TraesCS2A01G103600 chr2B 90.909 44 4 0 1961 2004 18229115 18229072 2.770000e-05 60.2
14 TraesCS2A01G103600 chr7A 83.465 508 79 5 1065 1568 430814576 430814070 3.880000e-128 468.0
15 TraesCS2A01G103600 chr7A 94.686 207 8 3 2052 2256 723356052 723355847 4.140000e-83 318.0
16 TraesCS2A01G103600 chr7D 83.104 509 79 7 1065 1568 382755291 382754785 8.400000e-125 457.0
17 TraesCS2A01G103600 chr7D 79.710 207 37 5 86 288 625527361 625527156 7.430000e-31 145.0
18 TraesCS2A01G103600 chr7B 83.071 508 81 5 1065 1568 377135818 377135312 8.400000e-125 457.0
19 TraesCS2A01G103600 chr4A 82.600 523 80 5 1057 1575 177617908 177617393 3.910000e-123 451.0
20 TraesCS2A01G103600 chr1A 82.840 507 69 10 7 501 9332114 9331614 3.040000e-119 438.0
21 TraesCS2A01G103600 chr1A 94.089 203 10 2 2053 2255 290344232 290344432 8.950000e-80 307.0
22 TraesCS2A01G103600 chr1A 93.627 204 11 2 2052 2254 7664779 7664981 1.160000e-78 303.0
23 TraesCS2A01G103600 chr1A 92.718 206 13 2 2051 2256 17244619 17244416 1.940000e-76 296.0
24 TraesCS2A01G103600 chr4D 82.115 520 82 5 1057 1572 302399156 302399668 3.940000e-118 435.0
25 TraesCS2A01G103600 chr4D 78.245 547 72 19 1 503 1362140 1361597 8.950000e-80 307.0
26 TraesCS2A01G103600 chr4D 78.440 436 51 17 2 395 55234979 55235413 7.120000e-61 244.0
27 TraesCS2A01G103600 chr4D 86.765 68 6 3 1963 2028 498382762 498382696 3.560000e-09 73.1
28 TraesCS2A01G103600 chr4B 81.888 519 85 5 1057 1572 377374734 377375246 1.830000e-116 429.0
29 TraesCS2A01G103600 chr3A 96.535 202 7 0 2050 2251 323103765 323103966 4.110000e-88 335.0
30 TraesCS2A01G103600 chr3A 93.103 203 10 3 2052 2254 714380596 714380398 6.970000e-76 294.0
31 TraesCS2A01G103600 chr3A 92.195 205 13 3 2051 2254 686191010 686191212 1.170000e-73 287.0
32 TraesCS2A01G103600 chr3A 81.695 295 40 12 9 296 744475461 744475174 1.540000e-57 233.0
33 TraesCS2A01G103600 chr5D 78.143 517 88 23 2 501 371059130 371058622 3.220000e-79 305.0
34 TraesCS2A01G103600 chr5D 79.565 230 35 12 280 503 268691944 268692167 1.230000e-33 154.0
35 TraesCS2A01G103600 chr5D 81.218 197 27 10 312 503 418586919 418586728 1.600000e-32 150.0
36 TraesCS2A01G103600 chr5A 93.237 207 9 4 2049 2255 660208404 660208203 1.500000e-77 300.0
37 TraesCS2A01G103600 chr5A 93.137 204 10 3 2052 2254 569989544 569989744 1.940000e-76 296.0
38 TraesCS2A01G103600 chr5A 92.965 199 12 2 2056 2254 71499348 71499544 3.240000e-74 289.0
39 TraesCS2A01G103600 chr5A 79.043 439 59 19 90 503 10622521 10622951 1.170000e-68 270.0
40 TraesCS2A01G103600 chr5B 90.498 221 17 4 2020 2240 633284428 633284212 3.240000e-74 289.0
41 TraesCS2A01G103600 chr6D 76.894 528 69 29 9 507 81921506 81921003 1.530000e-62 250.0
42 TraesCS2A01G103600 chr6D 75.522 527 90 26 1 501 84289322 84289835 3.340000e-54 222.0
43 TraesCS2A01G103600 chrUn 81.944 288 45 7 6 288 29522424 29522709 1.190000e-58 237.0
44 TraesCS2A01G103600 chrUn 93.182 44 3 0 1961 2004 146256796 146256839 5.950000e-07 65.8
45 TraesCS2A01G103600 chrUn 89.796 49 5 0 1956 2004 167255833 167255785 2.140000e-06 63.9
46 TraesCS2A01G103600 chrUn 90.909 44 4 0 1961 2004 167263224 167263181 2.770000e-05 60.2
47 TraesCS2A01G103600 chrUn 90.909 44 4 0 1961 2004 167269488 167269445 2.770000e-05 60.2
48 TraesCS2A01G103600 chrUn 90.909 44 4 0 1961 2004 167272594 167272551 2.770000e-05 60.2
49 TraesCS2A01G103600 chr3D 76.562 512 68 21 43 504 591627419 591627928 1.540000e-57 233.0
50 TraesCS2A01G103600 chr1B 80.916 262 39 10 52 308 430887483 430887228 2.020000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G103600 chr2A 57174717 57177292 2575 True 4758.0 4758 100.000 1 2576 1 chr2A.!!$R1 2575
1 TraesCS2A01G103600 chr2D 55763274 55765059 1785 True 792.0 1868 94.077 768 2576 3 chr2D.!!$R4 1808
2 TraesCS2A01G103600 chr2B 88433492 88436764 3272 True 658.7 1642 91.647 800 2576 3 chr2B.!!$R4 1776
3 TraesCS2A01G103600 chr7A 430814070 430814576 506 True 468.0 468 83.465 1065 1568 1 chr7A.!!$R1 503
4 TraesCS2A01G103600 chr7D 382754785 382755291 506 True 457.0 457 83.104 1065 1568 1 chr7D.!!$R1 503
5 TraesCS2A01G103600 chr7B 377135312 377135818 506 True 457.0 457 83.071 1065 1568 1 chr7B.!!$R1 503
6 TraesCS2A01G103600 chr4A 177617393 177617908 515 True 451.0 451 82.600 1057 1575 1 chr4A.!!$R1 518
7 TraesCS2A01G103600 chr1A 9331614 9332114 500 True 438.0 438 82.840 7 501 1 chr1A.!!$R1 494
8 TraesCS2A01G103600 chr4D 302399156 302399668 512 False 435.0 435 82.115 1057 1572 1 chr4D.!!$F2 515
9 TraesCS2A01G103600 chr4D 1361597 1362140 543 True 307.0 307 78.245 1 503 1 chr4D.!!$R1 502
10 TraesCS2A01G103600 chr4B 377374734 377375246 512 False 429.0 429 81.888 1057 1572 1 chr4B.!!$F1 515
11 TraesCS2A01G103600 chr5D 371058622 371059130 508 True 305.0 305 78.143 2 501 1 chr5D.!!$R1 499
12 TraesCS2A01G103600 chr6D 81921003 81921506 503 True 250.0 250 76.894 9 507 1 chr6D.!!$R1 498
13 TraesCS2A01G103600 chr6D 84289322 84289835 513 False 222.0 222 75.522 1 501 1 chr6D.!!$F1 500
14 TraesCS2A01G103600 chr3D 591627419 591627928 509 False 233.0 233 76.562 43 504 1 chr3D.!!$F1 461

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 795 0.03601 ACGAGCTTCCATGGAACCAG 60.036 55.0 23.63 15.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1941 2751 0.464452 CCGGGTAAGGTGCTCTTAGG 59.536 60.0 0.0 0.0 38.51 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.986442 ATTGCACAAATTTTGGCCAAC 57.014 38.095 20.35 4.40 31.09 3.77
60 61 8.997323 CACAAATTTTGGCCAACTCATAAAATA 58.003 29.630 20.35 0.00 32.46 1.40
169 174 3.959535 AATGGTCGTGCATTCCAAAAT 57.040 38.095 10.56 0.50 34.80 1.82
182 187 8.159709 GTGCATTCCAAAATATGTTCGTTAAAC 58.840 33.333 0.00 0.00 38.43 2.01
219 226 8.961294 TCATGAATTTCAAAATTTGTTCCACT 57.039 26.923 2.68 0.00 38.64 4.00
235 250 8.655651 TTGTTCCACTAATTTCCAAAAATGTC 57.344 30.769 0.00 0.00 35.27 3.06
277 293 7.855409 TGTTCGCCGATTCAAGAAAATTATATG 59.145 33.333 0.00 0.00 0.00 1.78
453 556 1.614996 AATGTGGTCGTTGCCATTGA 58.385 45.000 0.00 0.00 41.08 2.57
508 613 2.752903 CGGCCCTTTTGCTAGTTTGTAT 59.247 45.455 0.00 0.00 0.00 2.29
510 615 4.396790 CGGCCCTTTTGCTAGTTTGTATTA 59.603 41.667 0.00 0.00 0.00 0.98
511 616 5.067283 CGGCCCTTTTGCTAGTTTGTATTAT 59.933 40.000 0.00 0.00 0.00 1.28
512 617 6.261381 CGGCCCTTTTGCTAGTTTGTATTATA 59.739 38.462 0.00 0.00 0.00 0.98
513 618 7.040686 CGGCCCTTTTGCTAGTTTGTATTATAT 60.041 37.037 0.00 0.00 0.00 0.86
514 619 8.638873 GGCCCTTTTGCTAGTTTGTATTATATT 58.361 33.333 0.00 0.00 0.00 1.28
538 643 9.823647 ATTATATTTGGCGAACTATCCATCTAG 57.176 33.333 0.00 0.00 31.54 2.43
539 644 3.386768 TTGGCGAACTATCCATCTAGC 57.613 47.619 0.00 0.00 31.54 3.42
540 645 1.618837 TGGCGAACTATCCATCTAGCC 59.381 52.381 0.00 0.00 43.26 3.93
541 646 1.402984 GGCGAACTATCCATCTAGCCG 60.403 57.143 0.00 0.00 33.66 5.52
542 647 1.540267 GCGAACTATCCATCTAGCCGA 59.460 52.381 0.00 0.00 0.00 5.54
543 648 2.668834 GCGAACTATCCATCTAGCCGAC 60.669 54.545 0.00 0.00 0.00 4.79
544 649 2.552743 CGAACTATCCATCTAGCCGACA 59.447 50.000 0.00 0.00 0.00 4.35
545 650 3.609644 CGAACTATCCATCTAGCCGACAC 60.610 52.174 0.00 0.00 0.00 3.67
546 651 1.880675 ACTATCCATCTAGCCGACACG 59.119 52.381 0.00 0.00 0.00 4.49
549 654 1.306148 TCCATCTAGCCGACACGTAG 58.694 55.000 0.00 0.00 0.00 3.51
551 656 1.002684 CCATCTAGCCGACACGTAGAC 60.003 57.143 0.00 0.00 0.00 2.59
552 657 1.002684 CATCTAGCCGACACGTAGACC 60.003 57.143 0.00 0.00 0.00 3.85
555 660 1.471684 CTAGCCGACACGTAGACCTTT 59.528 52.381 0.00 0.00 0.00 3.11
557 662 1.888512 AGCCGACACGTAGACCTTTTA 59.111 47.619 0.00 0.00 0.00 1.52
558 663 2.297033 AGCCGACACGTAGACCTTTTAA 59.703 45.455 0.00 0.00 0.00 1.52
559 664 3.059166 GCCGACACGTAGACCTTTTAAA 58.941 45.455 0.00 0.00 0.00 1.52
560 665 3.681417 GCCGACACGTAGACCTTTTAAAT 59.319 43.478 0.00 0.00 0.00 1.40
561 666 4.201656 GCCGACACGTAGACCTTTTAAATC 60.202 45.833 0.00 0.00 0.00 2.17
562 667 4.030977 CCGACACGTAGACCTTTTAAATCG 59.969 45.833 0.00 0.00 0.00 3.34
564 669 5.138125 ACACGTAGACCTTTTAAATCGGA 57.862 39.130 10.15 0.00 0.00 4.55
565 670 5.540911 ACACGTAGACCTTTTAAATCGGAA 58.459 37.500 10.15 0.00 0.00 4.30
566 671 5.990996 ACACGTAGACCTTTTAAATCGGAAA 59.009 36.000 10.15 0.00 0.00 3.13
567 672 6.146673 ACACGTAGACCTTTTAAATCGGAAAG 59.853 38.462 10.15 0.00 33.67 2.62
568 673 6.366877 CACGTAGACCTTTTAAATCGGAAAGA 59.633 38.462 10.15 0.00 35.41 2.52
569 674 6.589139 ACGTAGACCTTTTAAATCGGAAAGAG 59.411 38.462 10.15 0.00 35.41 2.85
570 675 6.589139 CGTAGACCTTTTAAATCGGAAAGAGT 59.411 38.462 10.15 0.00 35.41 3.24
571 676 7.201418 CGTAGACCTTTTAAATCGGAAAGAGTC 60.201 40.741 10.15 0.00 35.41 3.36
572 677 5.938710 AGACCTTTTAAATCGGAAAGAGTCC 59.061 40.000 10.15 0.00 43.90 3.85
606 711 8.539117 AATAAACAGAAAGAGGGAAATATGGG 57.461 34.615 0.00 0.00 0.00 4.00
608 713 5.117406 ACAGAAAGAGGGAAATATGGGAC 57.883 43.478 0.00 0.00 0.00 4.46
623 728 1.351017 TGGGACATGGAACCAGAAGAC 59.649 52.381 0.00 0.00 0.00 3.01
624 729 1.351017 GGGACATGGAACCAGAAGACA 59.649 52.381 0.00 0.00 0.00 3.41
625 730 2.427506 GGACATGGAACCAGAAGACAC 58.572 52.381 0.00 0.00 0.00 3.67
627 732 3.070018 GACATGGAACCAGAAGACACAG 58.930 50.000 0.00 0.00 0.00 3.66
628 733 2.224621 ACATGGAACCAGAAGACACAGG 60.225 50.000 0.00 0.00 0.00 4.00
629 734 1.801242 TGGAACCAGAAGACACAGGA 58.199 50.000 0.00 0.00 0.00 3.86
631 736 2.507886 TGGAACCAGAAGACACAGGAAA 59.492 45.455 0.00 0.00 0.00 3.13
632 737 3.053991 TGGAACCAGAAGACACAGGAAAA 60.054 43.478 0.00 0.00 0.00 2.29
633 738 3.951680 GGAACCAGAAGACACAGGAAAAA 59.048 43.478 0.00 0.00 0.00 1.94
634 739 4.202020 GGAACCAGAAGACACAGGAAAAAC 60.202 45.833 0.00 0.00 0.00 2.43
635 740 2.943033 ACCAGAAGACACAGGAAAAACG 59.057 45.455 0.00 0.00 0.00 3.60
636 741 2.290641 CCAGAAGACACAGGAAAAACGG 59.709 50.000 0.00 0.00 0.00 4.44
638 743 3.002348 CAGAAGACACAGGAAAAACGGAC 59.998 47.826 0.00 0.00 0.00 4.79
641 746 1.332686 GACACAGGAAAAACGGACCAC 59.667 52.381 0.00 0.00 0.00 4.16
642 747 1.340211 ACACAGGAAAAACGGACCACA 60.340 47.619 0.00 0.00 0.00 4.17
643 748 1.333619 CACAGGAAAAACGGACCACAG 59.666 52.381 0.00 0.00 0.00 3.66
644 749 1.064979 ACAGGAAAAACGGACCACAGT 60.065 47.619 0.00 0.00 0.00 3.55
647 752 1.602377 GGAAAAACGGACCACAGTCAG 59.398 52.381 0.00 0.00 45.48 3.51
659 764 1.123077 ACAGTCAGTGAGGCAGACAA 58.877 50.000 0.00 0.00 36.25 3.18
661 766 2.092968 ACAGTCAGTGAGGCAGACAAAA 60.093 45.455 0.00 0.00 36.25 2.44
662 767 2.289002 CAGTCAGTGAGGCAGACAAAAC 59.711 50.000 0.00 0.00 36.25 2.43
663 768 1.261619 GTCAGTGAGGCAGACAAAACG 59.738 52.381 0.00 0.00 34.27 3.60
666 771 3.067106 CAGTGAGGCAGACAAAACGTAT 58.933 45.455 0.00 0.00 0.00 3.06
667 772 3.067106 AGTGAGGCAGACAAAACGTATG 58.933 45.455 0.00 0.00 39.94 2.39
670 775 4.154195 GTGAGGCAGACAAAACGTATGAAT 59.846 41.667 8.14 0.00 39.27 2.57
672 777 5.350365 TGAGGCAGACAAAACGTATGAATAC 59.650 40.000 8.14 0.00 39.27 1.89
686 791 3.904800 TGAATACGAGCTTCCATGGAA 57.095 42.857 25.53 25.53 0.00 3.53
687 792 3.531538 TGAATACGAGCTTCCATGGAAC 58.468 45.455 23.63 18.70 0.00 3.62
688 793 2.622064 ATACGAGCTTCCATGGAACC 57.378 50.000 23.63 17.14 0.00 3.62
690 795 0.036010 ACGAGCTTCCATGGAACCAG 60.036 55.000 23.63 15.00 0.00 4.00
691 796 0.250234 CGAGCTTCCATGGAACCAGA 59.750 55.000 23.63 2.66 0.00 3.86
693 798 0.622665 AGCTTCCATGGAACCAGAGG 59.377 55.000 23.63 13.41 0.00 3.69
694 799 1.034292 GCTTCCATGGAACCAGAGGC 61.034 60.000 23.63 19.17 0.00 4.70
696 801 1.863155 TTCCATGGAACCAGAGGCCC 61.863 60.000 23.63 0.00 0.00 5.80
697 802 2.615465 CCATGGAACCAGAGGCCCA 61.615 63.158 5.56 1.11 34.25 5.36
698 803 1.077212 CATGGAACCAGAGGCCCAG 60.077 63.158 0.00 0.00 33.48 4.45
700 805 0.846427 ATGGAACCAGAGGCCCAGAA 60.846 55.000 0.00 0.00 33.48 3.02
701 806 1.065410 TGGAACCAGAGGCCCAGAAA 61.065 55.000 0.00 0.00 0.00 2.52
702 807 0.609406 GGAACCAGAGGCCCAGAAAC 60.609 60.000 0.00 0.00 0.00 2.78
704 809 1.415672 AACCAGAGGCCCAGAAACGA 61.416 55.000 0.00 0.00 0.00 3.85
705 810 1.374947 CCAGAGGCCCAGAAACGAA 59.625 57.895 0.00 0.00 0.00 3.85
706 811 0.674895 CCAGAGGCCCAGAAACGAAG 60.675 60.000 0.00 0.00 0.00 3.79
707 812 0.321671 CAGAGGCCCAGAAACGAAGA 59.678 55.000 0.00 0.00 0.00 2.87
708 813 0.610687 AGAGGCCCAGAAACGAAGAG 59.389 55.000 0.00 0.00 0.00 2.85
710 815 0.610687 AGGCCCAGAAACGAAGAGAG 59.389 55.000 0.00 0.00 0.00 3.20
711 816 1.021920 GGCCCAGAAACGAAGAGAGC 61.022 60.000 0.00 0.00 0.00 4.09
712 817 0.320771 GCCCAGAAACGAAGAGAGCA 60.321 55.000 0.00 0.00 0.00 4.26
713 818 1.878102 GCCCAGAAACGAAGAGAGCAA 60.878 52.381 0.00 0.00 0.00 3.91
714 819 2.494059 CCCAGAAACGAAGAGAGCAAA 58.506 47.619 0.00 0.00 0.00 3.68
716 821 2.096019 CCAGAAACGAAGAGAGCAAAGC 60.096 50.000 0.00 0.00 0.00 3.51
717 822 2.096019 CAGAAACGAAGAGAGCAAAGCC 60.096 50.000 0.00 0.00 0.00 4.35
718 823 1.873591 GAAACGAAGAGAGCAAAGCCA 59.126 47.619 0.00 0.00 0.00 4.75
721 826 0.519077 CGAAGAGAGCAAAGCCAACC 59.481 55.000 0.00 0.00 0.00 3.77
722 827 0.884514 GAAGAGAGCAAAGCCAACCC 59.115 55.000 0.00 0.00 0.00 4.11
723 828 0.890996 AAGAGAGCAAAGCCAACCCG 60.891 55.000 0.00 0.00 0.00 5.28
724 829 1.302511 GAGAGCAAAGCCAACCCGA 60.303 57.895 0.00 0.00 0.00 5.14
725 830 1.301677 GAGAGCAAAGCCAACCCGAG 61.302 60.000 0.00 0.00 0.00 4.63
726 831 2.982744 GAGCAAAGCCAACCCGAGC 61.983 63.158 0.00 0.00 0.00 5.03
727 832 4.056125 GCAAAGCCAACCCGAGCC 62.056 66.667 0.00 0.00 0.00 4.70
728 833 3.737172 CAAAGCCAACCCGAGCCG 61.737 66.667 0.00 0.00 0.00 5.52
740 845 2.665185 GAGCCGGTGCGAAAGTGT 60.665 61.111 1.90 0.00 44.33 3.55
741 846 2.954753 GAGCCGGTGCGAAAGTGTG 61.955 63.158 1.90 0.00 44.33 3.82
742 847 4.683334 GCCGGTGCGAAAGTGTGC 62.683 66.667 1.90 0.00 0.00 4.57
743 848 2.972505 CCGGTGCGAAAGTGTGCT 60.973 61.111 0.00 0.00 0.00 4.40
744 849 2.249309 CGGTGCGAAAGTGTGCTG 59.751 61.111 0.00 0.00 0.00 4.41
746 851 2.050985 GTGCGAAAGTGTGCTGCC 60.051 61.111 0.00 0.00 0.00 4.85
748 853 1.070615 TGCGAAAGTGTGCTGCCTA 59.929 52.632 0.00 0.00 0.00 3.93
749 854 1.227999 TGCGAAAGTGTGCTGCCTAC 61.228 55.000 0.00 0.00 0.00 3.18
750 855 0.951040 GCGAAAGTGTGCTGCCTACT 60.951 55.000 0.00 0.00 0.00 2.57
751 856 0.792640 CGAAAGTGTGCTGCCTACTG 59.207 55.000 6.65 0.00 0.00 2.74
753 858 0.890996 AAAGTGTGCTGCCTACTGCC 60.891 55.000 6.65 0.00 39.83 4.85
755 860 4.393155 TGTGCTGCCTACTGCCGG 62.393 66.667 0.00 0.00 39.83 6.13
759 864 4.162690 CTGCCTACTGCCGGGGAC 62.163 72.222 2.18 0.00 40.16 4.46
762 867 2.138179 GCCTACTGCCGGGGACATA 61.138 63.158 2.18 0.00 0.00 2.29
763 868 1.746517 CCTACTGCCGGGGACATAC 59.253 63.158 2.18 0.00 0.00 2.39
764 869 1.746517 CTACTGCCGGGGACATACC 59.253 63.158 2.18 0.00 38.08 2.73
765 870 0.759436 CTACTGCCGGGGACATACCT 60.759 60.000 2.18 0.00 38.98 3.08
776 881 3.325135 GGGGACATACCTAACAGATCCAG 59.675 52.174 0.00 0.00 38.98 3.86
803 908 4.379221 CGTGAGTCGGTTCCGATC 57.621 61.111 16.87 14.45 40.65 3.69
806 1549 2.278661 GAGTCGGTTCCGATCGGC 60.279 66.667 29.62 16.09 40.65 5.54
815 1558 0.672401 TTCCGATCGGCTGTTTCCAC 60.672 55.000 29.62 0.00 34.68 4.02
865 1608 2.504367 CGGCAGAGAAAAAGGAAGGAA 58.496 47.619 0.00 0.00 0.00 3.36
866 1609 2.226674 CGGCAGAGAAAAAGGAAGGAAC 59.773 50.000 0.00 0.00 0.00 3.62
867 1610 2.226674 GGCAGAGAAAAAGGAAGGAACG 59.773 50.000 0.00 0.00 0.00 3.95
868 1611 3.139077 GCAGAGAAAAAGGAAGGAACGA 58.861 45.455 0.00 0.00 0.00 3.85
869 1612 3.564225 GCAGAGAAAAAGGAAGGAACGAA 59.436 43.478 0.00 0.00 0.00 3.85
1617 2411 3.838550 GCTTTTACGATTACACACAAGCG 59.161 43.478 0.00 0.00 42.68 4.68
1634 2428 4.034258 GATGCATGCATCGGCCCG 62.034 66.667 37.33 0.00 42.55 6.13
1653 2451 2.793232 CCGCCGTTTATGTAGTAAGCTC 59.207 50.000 0.00 0.00 0.00 4.09
1678 2476 4.473444 TGATGAAGAACAGCCCTTTCTTT 58.527 39.130 6.33 0.00 42.21 2.52
1679 2477 4.520492 TGATGAAGAACAGCCCTTTCTTTC 59.480 41.667 6.33 3.03 42.21 2.62
1680 2478 4.170468 TGAAGAACAGCCCTTTCTTTCT 57.830 40.909 6.33 0.00 42.21 2.52
1722 2528 2.089201 TCAGATGCAATGCAACCTCTG 58.911 47.619 23.83 23.83 43.62 3.35
1792 2598 3.971305 AGGTTTCATACATACGATCCCCA 59.029 43.478 0.00 0.00 0.00 4.96
1850 2657 4.350368 TGTGTGTCTAATCATGTGGTGT 57.650 40.909 0.00 0.00 0.00 4.16
1910 2720 9.783256 GTATAATCATATACGCATGTACACTCA 57.217 33.333 0.00 0.00 35.78 3.41
1912 2722 5.508200 TCATATACGCATGTACACTCACA 57.492 39.130 0.00 0.00 32.26 3.58
1939 2749 2.420022 GACGTACGTACACACACCCTAT 59.580 50.000 22.87 0.00 0.00 2.57
1940 2750 2.819608 ACGTACGTACACACACCCTATT 59.180 45.455 21.41 0.00 0.00 1.73
1941 2751 3.119849 ACGTACGTACACACACCCTATTC 60.120 47.826 21.41 0.00 0.00 1.75
1958 2774 4.040584 CCTATTCCTAAGAGCACCTTACCC 59.959 50.000 0.00 0.00 36.34 3.69
1969 2785 2.344500 CTTACCCGGCCGACACAA 59.656 61.111 30.73 13.71 0.00 3.33
1976 2792 1.497278 CGGCCGACACAACATCTTG 59.503 57.895 24.07 0.00 0.00 3.02
1991 2807 5.852738 ACATCTTGAGATTGACAAAGTCG 57.147 39.130 0.00 0.00 31.57 4.18
1992 2808 5.541845 ACATCTTGAGATTGACAAAGTCGA 58.458 37.500 0.00 0.00 31.57 4.20
1997 2813 4.438148 TGAGATTGACAAAGTCGACACAA 58.562 39.130 19.50 14.72 34.95 3.33
1998 2814 4.873259 TGAGATTGACAAAGTCGACACAAA 59.127 37.500 19.50 3.60 34.95 2.83
2099 2919 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
2100 2920 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
2108 2928 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
2109 2929 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
2110 2930 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
2111 2931 6.073003 GCCATAAGTATTGCACATCTAAGTCC 60.073 42.308 0.00 0.00 0.00 3.85
2112 2932 7.220030 CCATAAGTATTGCACATCTAAGTCCT 58.780 38.462 0.00 0.00 0.00 3.85
2113 2933 8.367911 CCATAAGTATTGCACATCTAAGTCCTA 58.632 37.037 0.00 0.00 0.00 2.94
2114 2934 9.935241 CATAAGTATTGCACATCTAAGTCCTAT 57.065 33.333 0.00 0.00 0.00 2.57
2115 2935 9.935241 ATAAGTATTGCACATCTAAGTCCTATG 57.065 33.333 0.00 0.00 0.00 2.23
2116 2936 7.366847 AGTATTGCACATCTAAGTCCTATGT 57.633 36.000 0.00 0.00 34.22 2.29
2117 2937 7.437748 AGTATTGCACATCTAAGTCCTATGTC 58.562 38.462 0.00 0.00 31.60 3.06
2118 2938 5.675684 TTGCACATCTAAGTCCTATGTCA 57.324 39.130 0.00 0.00 31.60 3.58
2119 2939 5.876651 TGCACATCTAAGTCCTATGTCAT 57.123 39.130 0.00 0.00 31.60 3.06
2120 2940 6.239217 TGCACATCTAAGTCCTATGTCATT 57.761 37.500 0.00 0.00 31.60 2.57
2121 2941 6.051074 TGCACATCTAAGTCCTATGTCATTG 58.949 40.000 0.00 0.00 31.60 2.82
2122 2942 6.127083 TGCACATCTAAGTCCTATGTCATTGA 60.127 38.462 0.00 0.00 31.60 2.57
2123 2943 6.933521 GCACATCTAAGTCCTATGTCATTGAT 59.066 38.462 0.00 0.00 31.60 2.57
2124 2944 7.117523 GCACATCTAAGTCCTATGTCATTGATC 59.882 40.741 0.00 0.00 31.60 2.92
2125 2945 8.366401 CACATCTAAGTCCTATGTCATTGATCT 58.634 37.037 0.00 0.00 31.60 2.75
2126 2946 8.932610 ACATCTAAGTCCTATGTCATTGATCTT 58.067 33.333 0.00 0.82 0.00 2.40
2127 2947 9.205719 CATCTAAGTCCTATGTCATTGATCTTG 57.794 37.037 0.00 0.00 0.00 3.02
2128 2948 8.311395 TCTAAGTCCTATGTCATTGATCTTGT 57.689 34.615 0.00 0.00 0.00 3.16
2129 2949 8.200120 TCTAAGTCCTATGTCATTGATCTTGTG 58.800 37.037 0.00 0.00 0.00 3.33
2130 2950 6.305272 AGTCCTATGTCATTGATCTTGTGT 57.695 37.500 0.00 0.00 0.00 3.72
2131 2951 6.715280 AGTCCTATGTCATTGATCTTGTGTT 58.285 36.000 0.00 0.00 0.00 3.32
2132 2952 6.596888 AGTCCTATGTCATTGATCTTGTGTTG 59.403 38.462 0.00 0.00 0.00 3.33
2133 2953 6.595326 GTCCTATGTCATTGATCTTGTGTTGA 59.405 38.462 0.00 0.00 0.00 3.18
2134 2954 6.820152 TCCTATGTCATTGATCTTGTGTTGAG 59.180 38.462 0.00 0.00 0.00 3.02
2135 2955 6.820152 CCTATGTCATTGATCTTGTGTTGAGA 59.180 38.462 0.00 0.00 0.00 3.27
2136 2956 7.498239 CCTATGTCATTGATCTTGTGTTGAGAT 59.502 37.037 0.00 0.00 36.60 2.75
2137 2957 7.698506 ATGTCATTGATCTTGTGTTGAGATT 57.301 32.000 0.00 0.00 34.13 2.40
2138 2958 7.137490 TGTCATTGATCTTGTGTTGAGATTC 57.863 36.000 0.00 0.00 34.13 2.52
2139 2959 6.711645 TGTCATTGATCTTGTGTTGAGATTCA 59.288 34.615 0.00 0.00 34.13 2.57
2140 2960 7.392393 TGTCATTGATCTTGTGTTGAGATTCAT 59.608 33.333 0.00 0.00 34.13 2.57
2141 2961 7.696872 GTCATTGATCTTGTGTTGAGATTCATG 59.303 37.037 0.00 0.00 34.13 3.07
2142 2962 7.392393 TCATTGATCTTGTGTTGAGATTCATGT 59.608 33.333 0.00 0.00 34.13 3.21
2143 2963 6.490566 TGATCTTGTGTTGAGATTCATGTG 57.509 37.500 0.00 0.00 34.13 3.21
2144 2964 5.413523 TGATCTTGTGTTGAGATTCATGTGG 59.586 40.000 0.00 0.00 34.13 4.17
2145 2965 4.971939 TCTTGTGTTGAGATTCATGTGGA 58.028 39.130 0.00 0.00 0.00 4.02
2146 2966 5.563592 TCTTGTGTTGAGATTCATGTGGAT 58.436 37.500 0.00 0.00 0.00 3.41
2147 2967 6.710278 TCTTGTGTTGAGATTCATGTGGATA 58.290 36.000 0.00 0.00 0.00 2.59
2148 2968 7.341030 TCTTGTGTTGAGATTCATGTGGATAT 58.659 34.615 0.00 0.00 0.00 1.63
2149 2969 7.830697 TCTTGTGTTGAGATTCATGTGGATATT 59.169 33.333 0.00 0.00 0.00 1.28
2150 2970 7.943079 TGTGTTGAGATTCATGTGGATATTT 57.057 32.000 0.00 0.00 0.00 1.40
2151 2971 8.352137 TGTGTTGAGATTCATGTGGATATTTT 57.648 30.769 0.00 0.00 0.00 1.82
2152 2972 8.805175 TGTGTTGAGATTCATGTGGATATTTTT 58.195 29.630 0.00 0.00 0.00 1.94
2153 2973 9.294030 GTGTTGAGATTCATGTGGATATTTTTC 57.706 33.333 0.00 0.00 0.00 2.29
2154 2974 9.246670 TGTTGAGATTCATGTGGATATTTTTCT 57.753 29.630 0.00 0.00 0.00 2.52
2194 3014 9.436957 TTTCCTCTTTATACTTGATTCACTCAC 57.563 33.333 0.00 0.00 32.17 3.51
2195 3015 8.367660 TCCTCTTTATACTTGATTCACTCACT 57.632 34.615 0.00 0.00 32.17 3.41
2196 3016 8.816894 TCCTCTTTATACTTGATTCACTCACTT 58.183 33.333 0.00 0.00 32.17 3.16
2203 3023 8.939201 ATACTTGATTCACTCACTTAGATGTG 57.061 34.615 0.00 0.00 39.15 3.21
2204 3024 5.641209 ACTTGATTCACTCACTTAGATGTGC 59.359 40.000 0.00 0.00 37.81 4.57
2205 3025 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
2206 3026 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
2207 3027 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
2208 3028 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
2209 3029 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
2210 3030 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
2211 3031 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
2212 3032 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
2213 3033 7.976175 TCACTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
2214 3034 7.976175 CACTCACTTAGATGTGCAATAACTAGA 59.024 37.037 0.00 0.00 37.81 2.43
2215 3035 8.194104 ACTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
2216 3036 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
2217 3037 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
2339 3159 2.420129 CCTAACCATTTGGCTACGCTCT 60.420 50.000 0.00 0.00 39.32 4.09
2431 3397 4.658786 ACGAGCCCTCCCCCACTT 62.659 66.667 0.00 0.00 0.00 3.16
2439 3405 1.002857 CCTCCCCCACTTCCTTCATT 58.997 55.000 0.00 0.00 0.00 2.57
2466 3432 4.213482 GGAATCGGCCTAACATTGTATCAC 59.787 45.833 0.00 0.00 0.00 3.06
2511 3477 0.464452 GTCCAGCTATACCAACGCCT 59.536 55.000 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.128919 AGTTGGCCAAAATTTGTGCAATTA 58.871 33.333 22.47 0.00 33.60 1.40
34 35 6.857777 TTTATGAGTTGGCCAAAATTTGTG 57.142 33.333 22.47 0.00 0.00 3.33
141 144 4.690280 GGAATGCACGACCATTTTTGAATT 59.310 37.500 0.00 0.00 35.67 2.17
219 226 8.364142 AGAATCAACGGACATTTTTGGAAATTA 58.636 29.630 0.00 0.00 33.25 1.40
235 250 4.494199 GGCGAACATTTCTAGAATCAACGG 60.494 45.833 5.89 0.00 0.00 4.44
453 556 7.926018 GCAACGGGGAAAATAATTCATAATCTT 59.074 33.333 0.00 0.00 0.00 2.40
487 592 0.958822 ACAAACTAGCAAAAGGGCCG 59.041 50.000 0.00 0.00 0.00 6.13
512 617 9.823647 CTAGATGGATAGTTCGCCAAATATAAT 57.176 33.333 0.00 0.00 37.78 1.28
513 618 7.764443 GCTAGATGGATAGTTCGCCAAATATAA 59.236 37.037 0.00 0.00 37.78 0.98
514 619 7.265673 GCTAGATGGATAGTTCGCCAAATATA 58.734 38.462 0.00 0.00 37.78 0.86
515 620 6.109359 GCTAGATGGATAGTTCGCCAAATAT 58.891 40.000 0.00 0.00 37.78 1.28
516 621 5.479306 GCTAGATGGATAGTTCGCCAAATA 58.521 41.667 0.00 0.00 37.78 1.40
517 622 4.319177 GCTAGATGGATAGTTCGCCAAAT 58.681 43.478 0.00 0.00 37.78 2.32
521 626 1.402984 CGGCTAGATGGATAGTTCGCC 60.403 57.143 0.00 0.00 0.00 5.54
522 627 1.540267 TCGGCTAGATGGATAGTTCGC 59.460 52.381 0.00 0.00 0.00 4.70
523 628 2.552743 TGTCGGCTAGATGGATAGTTCG 59.447 50.000 0.00 0.00 0.00 3.95
524 629 3.609644 CGTGTCGGCTAGATGGATAGTTC 60.610 52.174 0.00 0.00 0.00 3.01
526 631 1.880675 CGTGTCGGCTAGATGGATAGT 59.119 52.381 0.00 0.00 0.00 2.12
527 632 1.880675 ACGTGTCGGCTAGATGGATAG 59.119 52.381 0.00 0.00 0.00 2.08
529 634 1.880675 CTACGTGTCGGCTAGATGGAT 59.119 52.381 0.00 0.00 0.00 3.41
530 635 1.134310 TCTACGTGTCGGCTAGATGGA 60.134 52.381 0.00 0.00 0.00 3.41
532 637 1.002684 GGTCTACGTGTCGGCTAGATG 60.003 57.143 0.00 0.00 0.00 2.90
533 638 1.134159 AGGTCTACGTGTCGGCTAGAT 60.134 52.381 0.00 0.00 0.00 1.98
535 640 1.093159 AAGGTCTACGTGTCGGCTAG 58.907 55.000 0.00 0.00 0.00 3.42
537 642 0.677842 AAAAGGTCTACGTGTCGGCT 59.322 50.000 0.00 0.00 0.00 5.52
538 643 2.352503 TAAAAGGTCTACGTGTCGGC 57.647 50.000 0.00 0.00 0.00 5.54
539 644 4.030977 CGATTTAAAAGGTCTACGTGTCGG 59.969 45.833 0.00 0.00 0.00 4.79
540 645 4.030977 CCGATTTAAAAGGTCTACGTGTCG 59.969 45.833 0.00 0.00 0.00 4.35
541 646 5.163513 TCCGATTTAAAAGGTCTACGTGTC 58.836 41.667 0.00 0.00 0.00 3.67
542 647 5.138125 TCCGATTTAAAAGGTCTACGTGT 57.862 39.130 0.00 0.00 0.00 4.49
543 648 6.366877 TCTTTCCGATTTAAAAGGTCTACGTG 59.633 38.462 0.00 0.00 34.08 4.49
544 649 6.458210 TCTTTCCGATTTAAAAGGTCTACGT 58.542 36.000 11.38 0.00 34.08 3.57
545 650 6.589139 ACTCTTTCCGATTTAAAAGGTCTACG 59.411 38.462 11.38 0.00 34.08 3.51
546 651 7.064371 GGACTCTTTCCGATTTAAAAGGTCTAC 59.936 40.741 11.38 0.00 35.42 2.59
549 654 6.179504 GGACTCTTTCCGATTTAAAAGGTC 57.820 41.667 11.38 0.00 33.46 3.85
580 685 8.981659 CCCATATTTCCCTCTTTCTGTTTATTT 58.018 33.333 0.00 0.00 0.00 1.40
581 686 8.343787 TCCCATATTTCCCTCTTTCTGTTTATT 58.656 33.333 0.00 0.00 0.00 1.40
583 688 7.116736 GTCCCATATTTCCCTCTTTCTGTTTA 58.883 38.462 0.00 0.00 0.00 2.01
584 689 5.952347 GTCCCATATTTCCCTCTTTCTGTTT 59.048 40.000 0.00 0.00 0.00 2.83
585 690 5.015178 TGTCCCATATTTCCCTCTTTCTGTT 59.985 40.000 0.00 0.00 0.00 3.16
586 691 4.540099 TGTCCCATATTTCCCTCTTTCTGT 59.460 41.667 0.00 0.00 0.00 3.41
587 692 5.116084 TGTCCCATATTTCCCTCTTTCTG 57.884 43.478 0.00 0.00 0.00 3.02
588 693 5.399497 CCATGTCCCATATTTCCCTCTTTCT 60.399 44.000 0.00 0.00 0.00 2.52
589 694 4.829492 CCATGTCCCATATTTCCCTCTTTC 59.171 45.833 0.00 0.00 0.00 2.62
590 695 4.482025 TCCATGTCCCATATTTCCCTCTTT 59.518 41.667 0.00 0.00 0.00 2.52
591 696 4.054369 TCCATGTCCCATATTTCCCTCTT 58.946 43.478 0.00 0.00 0.00 2.85
592 697 3.680169 TCCATGTCCCATATTTCCCTCT 58.320 45.455 0.00 0.00 0.00 3.69
593 698 4.145052 GTTCCATGTCCCATATTTCCCTC 58.855 47.826 0.00 0.00 0.00 4.30
595 700 3.230976 GGTTCCATGTCCCATATTTCCC 58.769 50.000 0.00 0.00 0.00 3.97
596 701 3.891366 CTGGTTCCATGTCCCATATTTCC 59.109 47.826 0.00 0.00 0.00 3.13
597 702 4.792068 TCTGGTTCCATGTCCCATATTTC 58.208 43.478 0.00 0.00 0.00 2.17
599 704 4.478317 TCTTCTGGTTCCATGTCCCATATT 59.522 41.667 0.00 0.00 0.00 1.28
600 705 4.047166 TCTTCTGGTTCCATGTCCCATAT 58.953 43.478 0.00 0.00 0.00 1.78
601 706 3.199946 GTCTTCTGGTTCCATGTCCCATA 59.800 47.826 0.00 0.00 0.00 2.74
602 707 2.025887 GTCTTCTGGTTCCATGTCCCAT 60.026 50.000 0.00 0.00 0.00 4.00
603 708 1.351017 GTCTTCTGGTTCCATGTCCCA 59.649 52.381 0.00 0.00 0.00 4.37
604 709 1.351017 TGTCTTCTGGTTCCATGTCCC 59.649 52.381 0.00 0.00 0.00 4.46
605 710 2.224523 TGTGTCTTCTGGTTCCATGTCC 60.225 50.000 0.00 0.00 0.00 4.02
606 711 3.070018 CTGTGTCTTCTGGTTCCATGTC 58.930 50.000 0.00 0.00 0.00 3.06
608 713 2.038952 TCCTGTGTCTTCTGGTTCCATG 59.961 50.000 0.00 0.00 0.00 3.66
609 714 2.338809 TCCTGTGTCTTCTGGTTCCAT 58.661 47.619 0.00 0.00 0.00 3.41
611 716 2.930826 TTCCTGTGTCTTCTGGTTCC 57.069 50.000 0.00 0.00 0.00 3.62
612 717 4.495844 CGTTTTTCCTGTGTCTTCTGGTTC 60.496 45.833 0.00 0.00 0.00 3.62
613 718 3.377172 CGTTTTTCCTGTGTCTTCTGGTT 59.623 43.478 0.00 0.00 0.00 3.67
614 719 2.943033 CGTTTTTCCTGTGTCTTCTGGT 59.057 45.455 0.00 0.00 0.00 4.00
615 720 2.290641 CCGTTTTTCCTGTGTCTTCTGG 59.709 50.000 0.00 0.00 0.00 3.86
616 721 3.002348 GTCCGTTTTTCCTGTGTCTTCTG 59.998 47.826 0.00 0.00 0.00 3.02
617 722 3.203716 GTCCGTTTTTCCTGTGTCTTCT 58.796 45.455 0.00 0.00 0.00 2.85
618 723 2.289820 GGTCCGTTTTTCCTGTGTCTTC 59.710 50.000 0.00 0.00 0.00 2.87
619 724 2.294979 GGTCCGTTTTTCCTGTGTCTT 58.705 47.619 0.00 0.00 0.00 3.01
620 725 1.210967 TGGTCCGTTTTTCCTGTGTCT 59.789 47.619 0.00 0.00 0.00 3.41
621 726 1.332686 GTGGTCCGTTTTTCCTGTGTC 59.667 52.381 0.00 0.00 0.00 3.67
623 728 1.333619 CTGTGGTCCGTTTTTCCTGTG 59.666 52.381 0.00 0.00 0.00 3.66
624 729 1.064979 ACTGTGGTCCGTTTTTCCTGT 60.065 47.619 0.00 0.00 0.00 4.00
625 730 1.602377 GACTGTGGTCCGTTTTTCCTG 59.398 52.381 0.00 0.00 36.53 3.86
627 732 1.602377 CTGACTGTGGTCCGTTTTTCC 59.398 52.381 0.00 0.00 41.47 3.13
628 733 2.031683 CACTGACTGTGGTCCGTTTTTC 59.968 50.000 4.63 0.00 42.68 2.29
629 734 2.014128 CACTGACTGTGGTCCGTTTTT 58.986 47.619 4.63 0.00 42.68 1.94
631 736 0.828022 TCACTGACTGTGGTCCGTTT 59.172 50.000 12.00 0.00 46.20 3.60
632 737 0.389391 CTCACTGACTGTGGTCCGTT 59.611 55.000 12.00 0.00 46.20 4.44
633 738 1.464376 CCTCACTGACTGTGGTCCGT 61.464 60.000 12.00 0.00 46.20 4.69
634 739 1.290324 CCTCACTGACTGTGGTCCG 59.710 63.158 12.00 0.42 46.20 4.79
635 740 1.004440 GCCTCACTGACTGTGGTCC 60.004 63.158 12.00 0.00 46.20 4.46
636 741 0.320247 CTGCCTCACTGACTGTGGTC 60.320 60.000 12.00 3.45 46.20 4.02
638 743 0.320247 GTCTGCCTCACTGACTGTGG 60.320 60.000 12.00 3.90 46.20 4.17
641 746 2.245159 TTTGTCTGCCTCACTGACTG 57.755 50.000 4.67 0.00 45.01 3.51
642 747 2.565841 GTTTTGTCTGCCTCACTGACT 58.434 47.619 4.67 0.00 45.01 3.41
643 748 1.261619 CGTTTTGTCTGCCTCACTGAC 59.738 52.381 0.00 0.00 44.99 3.51
644 749 1.134521 ACGTTTTGTCTGCCTCACTGA 60.135 47.619 0.00 0.00 0.00 3.41
647 752 3.064207 TCATACGTTTTGTCTGCCTCAC 58.936 45.455 0.00 0.00 0.00 3.51
648 753 3.394674 TCATACGTTTTGTCTGCCTCA 57.605 42.857 0.00 0.00 0.00 3.86
649 754 4.946784 ATTCATACGTTTTGTCTGCCTC 57.053 40.909 0.00 0.00 0.00 4.70
650 755 5.796350 GTATTCATACGTTTTGTCTGCCT 57.204 39.130 0.00 0.00 0.00 4.75
662 767 7.976351 GTTCCATGGAAGCTCGTATTCATACG 61.976 46.154 27.73 12.29 44.30 3.06
663 768 4.883083 TCCATGGAAGCTCGTATTCATAC 58.117 43.478 13.46 0.00 0.00 2.39
666 771 3.531538 GTTCCATGGAAGCTCGTATTCA 58.468 45.455 27.73 0.00 34.49 2.57
667 772 2.872858 GGTTCCATGGAAGCTCGTATTC 59.127 50.000 37.78 19.78 45.75 1.75
676 781 0.394899 GGCCTCTGGTTCCATGGAAG 60.395 60.000 27.73 16.18 34.49 3.46
678 783 2.308722 GGGCCTCTGGTTCCATGGA 61.309 63.158 11.44 11.44 0.00 3.41
680 785 1.077212 CTGGGCCTCTGGTTCCATG 60.077 63.158 4.53 0.00 30.75 3.66
683 788 0.609406 GTTTCTGGGCCTCTGGTTCC 60.609 60.000 4.53 0.00 0.00 3.62
684 789 0.955919 CGTTTCTGGGCCTCTGGTTC 60.956 60.000 4.53 0.00 0.00 3.62
686 791 1.415672 TTCGTTTCTGGGCCTCTGGT 61.416 55.000 4.53 0.00 0.00 4.00
687 792 0.674895 CTTCGTTTCTGGGCCTCTGG 60.675 60.000 4.53 0.00 0.00 3.86
688 793 0.321671 TCTTCGTTTCTGGGCCTCTG 59.678 55.000 4.53 0.00 0.00 3.35
690 795 0.608640 TCTCTTCGTTTCTGGGCCTC 59.391 55.000 4.53 0.00 0.00 4.70
691 796 0.610687 CTCTCTTCGTTTCTGGGCCT 59.389 55.000 4.53 0.00 0.00 5.19
693 798 0.320771 TGCTCTCTTCGTTTCTGGGC 60.321 55.000 0.00 0.00 0.00 5.36
694 799 2.169832 TTGCTCTCTTCGTTTCTGGG 57.830 50.000 0.00 0.00 0.00 4.45
696 801 2.096019 GGCTTTGCTCTCTTCGTTTCTG 60.096 50.000 0.00 0.00 0.00 3.02
697 802 2.147150 GGCTTTGCTCTCTTCGTTTCT 58.853 47.619 0.00 0.00 0.00 2.52
698 803 1.873591 TGGCTTTGCTCTCTTCGTTTC 59.126 47.619 0.00 0.00 0.00 2.78
700 805 1.604278 GTTGGCTTTGCTCTCTTCGTT 59.396 47.619 0.00 0.00 0.00 3.85
701 806 1.230324 GTTGGCTTTGCTCTCTTCGT 58.770 50.000 0.00 0.00 0.00 3.85
702 807 0.519077 GGTTGGCTTTGCTCTCTTCG 59.481 55.000 0.00 0.00 0.00 3.79
704 809 0.890996 CGGGTTGGCTTTGCTCTCTT 60.891 55.000 0.00 0.00 0.00 2.85
705 810 1.302832 CGGGTTGGCTTTGCTCTCT 60.303 57.895 0.00 0.00 0.00 3.10
706 811 1.301677 CTCGGGTTGGCTTTGCTCTC 61.302 60.000 0.00 0.00 0.00 3.20
707 812 1.302832 CTCGGGTTGGCTTTGCTCT 60.303 57.895 0.00 0.00 0.00 4.09
708 813 2.982744 GCTCGGGTTGGCTTTGCTC 61.983 63.158 0.00 0.00 0.00 4.26
710 815 4.056125 GGCTCGGGTTGGCTTTGC 62.056 66.667 0.00 0.00 0.00 3.68
711 816 3.737172 CGGCTCGGGTTGGCTTTG 61.737 66.667 0.00 0.00 0.00 2.77
722 827 3.777925 CACTTTCGCACCGGCTCG 61.778 66.667 0.00 5.28 38.10 5.03
723 828 2.665185 ACACTTTCGCACCGGCTC 60.665 61.111 0.00 0.00 38.10 4.70
724 829 2.972505 CACACTTTCGCACCGGCT 60.973 61.111 0.00 0.00 38.10 5.52
725 830 4.683334 GCACACTTTCGCACCGGC 62.683 66.667 0.00 0.00 0.00 6.13
726 831 2.972505 AGCACACTTTCGCACCGG 60.973 61.111 0.00 0.00 0.00 5.28
727 832 2.249309 CAGCACACTTTCGCACCG 59.751 61.111 0.00 0.00 0.00 4.94
728 833 2.050985 GCAGCACACTTTCGCACC 60.051 61.111 0.00 0.00 0.00 5.01
729 834 1.227999 TAGGCAGCACACTTTCGCAC 61.228 55.000 0.00 0.00 0.00 5.34
730 835 1.070615 TAGGCAGCACACTTTCGCA 59.929 52.632 0.00 0.00 0.00 5.10
731 836 0.951040 AGTAGGCAGCACACTTTCGC 60.951 55.000 0.00 0.00 0.00 4.70
732 837 0.792640 CAGTAGGCAGCACACTTTCG 59.207 55.000 0.00 0.00 0.00 3.46
733 838 0.519077 GCAGTAGGCAGCACACTTTC 59.481 55.000 0.00 0.00 43.97 2.62
735 840 4.386413 GCAGTAGGCAGCACACTT 57.614 55.556 0.00 0.00 43.97 3.16
744 849 2.138179 TATGTCCCCGGCAGTAGGC 61.138 63.158 0.00 0.00 43.74 3.93
746 851 0.759436 AGGTATGTCCCCGGCAGTAG 60.759 60.000 0.00 0.00 36.75 2.57
748 853 0.325860 TTAGGTATGTCCCCGGCAGT 60.326 55.000 0.00 0.00 36.75 4.40
749 854 0.106149 GTTAGGTATGTCCCCGGCAG 59.894 60.000 0.00 0.00 36.75 4.85
750 855 0.618107 TGTTAGGTATGTCCCCGGCA 60.618 55.000 0.00 0.00 36.75 5.69
751 856 0.106149 CTGTTAGGTATGTCCCCGGC 59.894 60.000 0.00 0.00 36.75 6.13
753 858 2.299297 GGATCTGTTAGGTATGTCCCCG 59.701 54.545 0.00 0.00 36.75 5.73
755 860 3.244249 GCTGGATCTGTTAGGTATGTCCC 60.244 52.174 0.00 0.00 36.75 4.46
756 861 3.388024 TGCTGGATCTGTTAGGTATGTCC 59.612 47.826 0.00 0.00 0.00 4.02
757 862 4.372656 GTGCTGGATCTGTTAGGTATGTC 58.627 47.826 0.00 0.00 0.00 3.06
758 863 3.181475 CGTGCTGGATCTGTTAGGTATGT 60.181 47.826 0.00 0.00 0.00 2.29
759 864 3.181475 ACGTGCTGGATCTGTTAGGTATG 60.181 47.826 0.00 0.00 0.00 2.39
760 865 3.031736 ACGTGCTGGATCTGTTAGGTAT 58.968 45.455 0.00 0.00 0.00 2.73
762 867 1.204941 GACGTGCTGGATCTGTTAGGT 59.795 52.381 0.00 0.00 0.00 3.08
763 868 1.471676 GGACGTGCTGGATCTGTTAGG 60.472 57.143 0.00 0.00 0.00 2.69
764 869 1.204704 TGGACGTGCTGGATCTGTTAG 59.795 52.381 8.99 0.00 0.00 2.34
765 870 1.067142 GTGGACGTGCTGGATCTGTTA 60.067 52.381 8.99 0.00 0.00 2.41
793 898 1.693083 GAAACAGCCGATCGGAACCG 61.693 60.000 37.64 22.15 41.35 4.44
794 899 1.366854 GGAAACAGCCGATCGGAACC 61.367 60.000 37.64 22.89 37.50 3.62
796 901 0.672401 GTGGAAACAGCCGATCGGAA 60.672 55.000 37.64 8.56 44.46 4.30
797 902 1.079405 GTGGAAACAGCCGATCGGA 60.079 57.895 37.64 11.34 44.46 4.55
798 903 2.452813 CGTGGAAACAGCCGATCGG 61.453 63.158 30.03 30.03 44.46 4.18
799 904 2.452813 CCGTGGAAACAGCCGATCG 61.453 63.158 8.51 8.51 44.46 3.69
800 905 0.672401 TTCCGTGGAAACAGCCGATC 60.672 55.000 0.00 0.00 44.46 3.69
801 906 0.250553 TTTCCGTGGAAACAGCCGAT 60.251 50.000 9.96 0.00 44.46 4.18
802 907 0.250553 ATTTCCGTGGAAACAGCCGA 60.251 50.000 15.89 0.00 45.34 5.54
803 908 1.396996 CTATTTCCGTGGAAACAGCCG 59.603 52.381 15.89 0.63 45.34 5.52
806 1549 5.183228 ACCATACTATTTCCGTGGAAACAG 58.817 41.667 16.17 16.17 45.34 3.16
815 1558 3.928727 TCGCCTACCATACTATTTCCG 57.071 47.619 0.00 0.00 0.00 4.30
866 1609 4.729918 AGGGCTGGCTTGGCTTCG 62.730 66.667 0.00 0.00 0.00 3.79
867 1610 2.753446 GAGGGCTGGCTTGGCTTC 60.753 66.667 0.00 3.47 0.00 3.86
868 1611 4.372999 GGAGGGCTGGCTTGGCTT 62.373 66.667 0.00 0.00 0.00 4.35
1594 2368 4.156182 GCTTGTGTGTAATCGTAAAAGCC 58.844 43.478 0.00 0.00 34.20 4.35
1595 2369 3.838550 CGCTTGTGTGTAATCGTAAAAGC 59.161 43.478 0.00 0.00 36.34 3.51
1596 2370 5.258685 TCGCTTGTGTGTAATCGTAAAAG 57.741 39.130 0.00 0.00 0.00 2.27
1597 2371 5.613812 CATCGCTTGTGTGTAATCGTAAAA 58.386 37.500 0.00 0.00 0.00 1.52
1598 2372 4.434989 GCATCGCTTGTGTGTAATCGTAAA 60.435 41.667 0.00 0.00 0.00 2.01
1599 2373 3.061563 GCATCGCTTGTGTGTAATCGTAA 59.938 43.478 0.00 0.00 0.00 3.18
1600 2374 2.601314 GCATCGCTTGTGTGTAATCGTA 59.399 45.455 0.00 0.00 0.00 3.43
1601 2375 1.393539 GCATCGCTTGTGTGTAATCGT 59.606 47.619 0.00 0.00 0.00 3.73
1602 2376 1.393196 TGCATCGCTTGTGTGTAATCG 59.607 47.619 0.00 0.00 0.00 3.34
1603 2377 3.357021 CATGCATCGCTTGTGTGTAATC 58.643 45.455 0.00 0.00 0.00 1.75
1617 2411 4.034258 CGGGCCGATGCATGCATC 62.034 66.667 39.25 39.25 46.71 3.91
1632 2426 2.793232 GAGCTTACTACATAAACGGCGG 59.207 50.000 13.24 0.00 0.00 6.13
1634 2428 3.699067 TCGAGCTTACTACATAAACGGC 58.301 45.455 0.00 0.00 0.00 5.68
1653 2451 2.322355 AGGGCTGTTCTTCATCATCG 57.678 50.000 0.00 0.00 0.00 3.84
1767 2573 6.271391 TGGGGATCGTATGTATGAAACCTATT 59.729 38.462 0.00 0.00 0.00 1.73
1792 2598 2.618045 CGGCCCTGTAATCTGAACCTTT 60.618 50.000 0.00 0.00 0.00 3.11
1901 2711 3.151554 ACGTCCATAGTGTGAGTGTACA 58.848 45.455 0.00 0.00 0.00 2.90
1910 2720 3.073678 TGTGTACGTACGTCCATAGTGT 58.926 45.455 26.53 0.00 0.00 3.55
1912 2722 3.073678 TGTGTGTACGTACGTCCATAGT 58.926 45.455 26.53 0.01 0.00 2.12
1939 2749 1.829222 CGGGTAAGGTGCTCTTAGGAA 59.171 52.381 1.32 0.00 38.51 3.36
1940 2750 1.481871 CGGGTAAGGTGCTCTTAGGA 58.518 55.000 1.32 0.00 38.51 2.94
1941 2751 0.464452 CCGGGTAAGGTGCTCTTAGG 59.536 60.000 0.00 0.00 38.51 2.69
1958 2774 0.948623 TCAAGATGTTGTGTCGGCCG 60.949 55.000 22.12 22.12 34.98 6.13
1969 2785 5.406780 GTCGACTTTGTCAATCTCAAGATGT 59.593 40.000 8.70 0.00 34.49 3.06
1976 2792 5.198274 GTTTGTGTCGACTTTGTCAATCTC 58.802 41.667 17.92 5.38 32.09 2.75
1991 2807 3.059800 GTCAACTAAGAGGCGTTTGTGTC 60.060 47.826 0.00 0.00 0.00 3.67
1992 2808 2.870411 GTCAACTAAGAGGCGTTTGTGT 59.130 45.455 0.00 0.00 0.00 3.72
1997 2813 3.746045 TTCTGTCAACTAAGAGGCGTT 57.254 42.857 0.00 0.00 0.00 4.84
1998 2814 3.391049 GTTTCTGTCAACTAAGAGGCGT 58.609 45.455 0.00 0.00 0.00 5.68
2085 2905 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
2086 2906 6.073003 GGACTTAGATGTGCAATACTTATGGC 60.073 42.308 0.00 0.00 33.16 4.40
2087 2907 7.220030 AGGACTTAGATGTGCAATACTTATGG 58.780 38.462 0.00 0.00 0.00 2.74
2088 2908 9.935241 ATAGGACTTAGATGTGCAATACTTATG 57.065 33.333 0.00 0.00 0.00 1.90
2089 2909 9.935241 CATAGGACTTAGATGTGCAATACTTAT 57.065 33.333 0.00 0.00 0.00 1.73
2090 2910 8.924303 ACATAGGACTTAGATGTGCAATACTTA 58.076 33.333 0.00 0.00 32.62 2.24
2091 2911 7.796054 ACATAGGACTTAGATGTGCAATACTT 58.204 34.615 0.00 0.00 32.62 2.24
2092 2912 7.069950 TGACATAGGACTTAGATGTGCAATACT 59.930 37.037 0.00 0.00 33.99 2.12
2093 2913 7.210174 TGACATAGGACTTAGATGTGCAATAC 58.790 38.462 0.00 0.00 33.99 1.89
2094 2914 7.360113 TGACATAGGACTTAGATGTGCAATA 57.640 36.000 0.00 0.00 33.99 1.90
2095 2915 6.239217 TGACATAGGACTTAGATGTGCAAT 57.761 37.500 0.00 0.00 33.99 3.56
2096 2916 5.675684 TGACATAGGACTTAGATGTGCAA 57.324 39.130 0.00 0.00 33.99 4.08
2097 2917 5.876651 ATGACATAGGACTTAGATGTGCA 57.123 39.130 0.00 0.00 33.99 4.57
2098 2918 6.283694 TCAATGACATAGGACTTAGATGTGC 58.716 40.000 0.00 0.00 33.99 4.57
2099 2919 8.366401 AGATCAATGACATAGGACTTAGATGTG 58.634 37.037 0.00 0.00 33.99 3.21
2100 2920 8.489676 AGATCAATGACATAGGACTTAGATGT 57.510 34.615 0.00 0.00 36.52 3.06
2101 2921 9.205719 CAAGATCAATGACATAGGACTTAGATG 57.794 37.037 0.00 0.00 0.00 2.90
2102 2922 8.932610 ACAAGATCAATGACATAGGACTTAGAT 58.067 33.333 5.62 0.00 0.00 1.98
2103 2923 8.200120 CACAAGATCAATGACATAGGACTTAGA 58.800 37.037 5.62 0.00 0.00 2.10
2104 2924 7.984050 ACACAAGATCAATGACATAGGACTTAG 59.016 37.037 5.62 0.00 0.00 2.18
2105 2925 7.851228 ACACAAGATCAATGACATAGGACTTA 58.149 34.615 5.62 0.00 0.00 2.24
2106 2926 6.715280 ACACAAGATCAATGACATAGGACTT 58.285 36.000 5.62 0.00 0.00 3.01
2107 2927 6.305272 ACACAAGATCAATGACATAGGACT 57.695 37.500 5.62 0.00 0.00 3.85
2108 2928 6.595326 TCAACACAAGATCAATGACATAGGAC 59.405 38.462 5.62 0.00 0.00 3.85
2109 2929 6.710278 TCAACACAAGATCAATGACATAGGA 58.290 36.000 5.62 0.00 0.00 2.94
2110 2930 6.820152 TCTCAACACAAGATCAATGACATAGG 59.180 38.462 5.62 0.00 0.00 2.57
2111 2931 7.838771 TCTCAACACAAGATCAATGACATAG 57.161 36.000 5.62 0.00 0.00 2.23
2112 2932 8.797350 AATCTCAACACAAGATCAATGACATA 57.203 30.769 5.62 0.00 32.29 2.29
2113 2933 7.392393 TGAATCTCAACACAAGATCAATGACAT 59.608 33.333 5.62 0.00 32.29 3.06
2114 2934 6.711645 TGAATCTCAACACAAGATCAATGACA 59.288 34.615 5.62 0.00 32.29 3.58
2115 2935 7.137490 TGAATCTCAACACAAGATCAATGAC 57.863 36.000 5.62 0.00 32.29 3.06
2116 2936 7.392393 ACATGAATCTCAACACAAGATCAATGA 59.608 33.333 0.00 0.00 33.92 2.57
2117 2937 7.484959 CACATGAATCTCAACACAAGATCAATG 59.515 37.037 0.00 0.00 34.87 2.82
2118 2938 7.362660 CCACATGAATCTCAACACAAGATCAAT 60.363 37.037 0.00 0.00 32.29 2.57
2119 2939 6.072342 CCACATGAATCTCAACACAAGATCAA 60.072 38.462 0.00 0.00 32.29 2.57
2120 2940 5.413523 CCACATGAATCTCAACACAAGATCA 59.586 40.000 0.00 0.00 32.29 2.92
2121 2941 5.645067 TCCACATGAATCTCAACACAAGATC 59.355 40.000 0.00 0.00 32.29 2.75
2122 2942 5.563592 TCCACATGAATCTCAACACAAGAT 58.436 37.500 0.00 0.00 34.96 2.40
2123 2943 4.971939 TCCACATGAATCTCAACACAAGA 58.028 39.130 0.00 0.00 0.00 3.02
2124 2944 5.892160 ATCCACATGAATCTCAACACAAG 57.108 39.130 0.00 0.00 0.00 3.16
2125 2945 7.943079 AATATCCACATGAATCTCAACACAA 57.057 32.000 0.00 0.00 0.00 3.33
2126 2946 7.943079 AAATATCCACATGAATCTCAACACA 57.057 32.000 0.00 0.00 0.00 3.72
2127 2947 9.294030 GAAAAATATCCACATGAATCTCAACAC 57.706 33.333 0.00 0.00 0.00 3.32
2128 2948 9.246670 AGAAAAATATCCACATGAATCTCAACA 57.753 29.630 0.00 0.00 0.00 3.33
2168 2988 9.436957 GTGAGTGAATCAAGTATAAAGAGGAAA 57.563 33.333 0.00 0.00 40.43 3.13
2169 2989 8.816894 AGTGAGTGAATCAAGTATAAAGAGGAA 58.183 33.333 0.00 0.00 40.43 3.36
2170 2990 8.367660 AGTGAGTGAATCAAGTATAAAGAGGA 57.632 34.615 0.00 0.00 40.43 3.71
2178 2998 7.493971 GCACATCTAAGTGAGTGAATCAAGTAT 59.506 37.037 0.00 0.00 42.05 2.12
2179 2999 6.813649 GCACATCTAAGTGAGTGAATCAAGTA 59.186 38.462 0.00 0.00 42.05 2.24
2180 3000 5.641209 GCACATCTAAGTGAGTGAATCAAGT 59.359 40.000 0.00 0.00 42.05 3.16
2181 3001 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
2182 3002 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
2183 3003 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
2184 3004 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
2185 3005 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
2186 3006 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
2187 3007 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
2188 3008 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
2189 3009 8.067751 TCTAGTTATTGCACATCTAAGTGAGT 57.932 34.615 0.00 0.00 42.05 3.41
2190 3010 7.168972 GCTCTAGTTATTGCACATCTAAGTGAG 59.831 40.741 0.00 0.00 42.05 3.51
2191 3011 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
2192 3012 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
2193 3013 6.878317 TGCTCTAGTTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
2387 3343 3.069729 GTGATCGGGCTATGTAAGAACCT 59.930 47.826 0.00 0.00 0.00 3.50
2431 3397 2.158813 GGCCGATTCCTACAATGAAGGA 60.159 50.000 0.00 0.00 41.47 3.36
2439 3405 3.199071 ACAATGTTAGGCCGATTCCTACA 59.801 43.478 0.00 0.00 38.37 2.74
2466 3432 7.201530 CCTTAGCATGTCCTTTTTCTAACTACG 60.202 40.741 0.00 0.00 0.00 3.51
2511 3477 2.557056 ACCATGACGACTTCTTCTTCGA 59.443 45.455 0.00 0.00 38.63 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.