Multiple sequence alignment - TraesCS2A01G103400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G103400 chr2A 100.000 2972 0 0 1 2972 57151306 57148335 0.000000e+00 5489.0
1 TraesCS2A01G103400 chr2D 91.615 1622 71 28 544 2116 55713857 55712252 0.000000e+00 2182.0
2 TraesCS2A01G103400 chr2D 95.012 1283 53 6 841 2116 39410120 39411398 0.000000e+00 2004.0
3 TraesCS2A01G103400 chr2D 94.857 350 17 1 2623 2972 55711936 55711588 2.010000e-151 545.0
4 TraesCS2A01G103400 chr2D 95.578 294 12 1 2679 2972 39412669 39412961 1.250000e-128 470.0
5 TraesCS2A01G103400 chr2D 83.438 320 31 11 2110 2428 55712229 55711931 8.110000e-71 278.0
6 TraesCS2A01G103400 chr2B 94.813 1311 54 8 811 2116 88418935 88417634 0.000000e+00 2032.0
7 TraesCS2A01G103400 chr2B 92.318 716 42 11 1409 2116 88251457 88250747 0.000000e+00 1005.0
8 TraesCS2A01G103400 chr2B 89.489 333 24 8 2108 2430 88417614 88417283 7.670000e-111 411.0
9 TraesCS2A01G103400 chr2B 90.789 228 7 4 2752 2971 88417193 88416972 2.900000e-75 292.0
10 TraesCS2A01G103400 chr2B 93.434 198 11 1 1 198 377075717 377075912 2.900000e-75 292.0
11 TraesCS2A01G103400 chr2B 90.654 214 19 1 2623 2836 88250379 88250167 1.740000e-72 283.0
12 TraesCS2A01G103400 chr2B 81.742 356 31 13 2108 2430 88250726 88250372 1.760000e-67 267.0
13 TraesCS2A01G103400 chr2B 94.964 139 5 2 2834 2971 88249742 88249605 1.790000e-52 217.0
14 TraesCS2A01G103400 chr2B 91.667 108 9 0 650 757 88419031 88418924 1.850000e-32 150.0
15 TraesCS2A01G103400 chr3D 91.961 311 21 2 216 524 81688256 81688564 1.640000e-117 433.0
16 TraesCS2A01G103400 chrUn 90.968 310 24 2 216 523 277522485 277522792 5.930000e-112 414.0
17 TraesCS2A01G103400 chrUn 92.929 198 12 1 1 198 277522225 277522420 1.350000e-73 287.0
18 TraesCS2A01G103400 chrUn 87.603 121 15 0 1053 1173 13816686 13816566 1.110000e-29 141.0
19 TraesCS2A01G103400 chrUn 88.525 61 7 0 575 635 108593020 108593080 1.140000e-09 75.0
20 TraesCS2A01G103400 chr5A 89.602 327 29 2 216 540 637186489 637186812 7.670000e-111 411.0
21 TraesCS2A01G103400 chr4D 90.675 311 25 2 216 524 1545016 1545324 7.670000e-111 411.0
22 TraesCS2A01G103400 chr4D 89.097 321 30 2 221 539 397076318 397076635 7.720000e-106 394.0
23 TraesCS2A01G103400 chr3A 89.815 324 28 4 221 541 687671972 687672293 7.670000e-111 411.0
24 TraesCS2A01G103400 chr3A 90.323 310 25 2 216 523 13156599 13156905 4.610000e-108 401.0
25 TraesCS2A01G103400 chr6A 90.260 308 24 4 219 523 372320307 372320003 5.970000e-107 398.0
26 TraesCS2A01G103400 chr6A 92.929 198 12 1 1 198 44872980 44873175 1.350000e-73 287.0
27 TraesCS2A01G103400 chr6A 91.358 81 7 0 555 635 163132787 163132707 8.710000e-21 111.0
28 TraesCS2A01G103400 chr1A 90.228 307 26 2 219 523 207423255 207422951 5.970000e-107 398.0
29 TraesCS2A01G103400 chr1A 93.434 198 11 1 1 198 448915752 448915947 2.900000e-75 292.0
30 TraesCS2A01G103400 chr1A 92.537 201 13 1 1 201 344499487 344499289 1.350000e-73 287.0
31 TraesCS2A01G103400 chr1A 82.105 95 14 2 541 635 126018158 126018249 8.830000e-11 78.7
32 TraesCS2A01G103400 chr7A 93.035 201 12 1 1 201 6172122 6171924 2.900000e-75 292.0
33 TraesCS2A01G103400 chr7A 86.260 131 18 0 1043 1173 299527340 299527470 3.090000e-30 143.0
34 TraesCS2A01G103400 chr4B 93.035 201 11 2 1 201 667731780 667731977 1.040000e-74 291.0
35 TraesCS2A01G103400 chr7B 92.537 201 15 0 1 201 53628505 53628305 3.750000e-74 289.0
36 TraesCS2A01G103400 chr1B 92.929 198 12 1 1 198 653061955 653062150 1.350000e-73 287.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G103400 chr2A 57148335 57151306 2971 True 5489.000000 5489 100.0000 1 2972 1 chr2A.!!$R1 2971
1 TraesCS2A01G103400 chr2D 39410120 39412961 2841 False 1237.000000 2004 95.2950 841 2972 2 chr2D.!!$F1 2131
2 TraesCS2A01G103400 chr2D 55711588 55713857 2269 True 1001.666667 2182 89.9700 544 2972 3 chr2D.!!$R1 2428
3 TraesCS2A01G103400 chr2B 88416972 88419031 2059 True 721.250000 2032 91.6895 650 2971 4 chr2B.!!$R2 2321
4 TraesCS2A01G103400 chr2B 88249605 88251457 1852 True 443.000000 1005 89.9195 1409 2971 4 chr2B.!!$R1 1562
5 TraesCS2A01G103400 chrUn 277522225 277522792 567 False 350.500000 414 91.9485 1 523 2 chrUn.!!$F2 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 598 1.069204 GCACAGAGTGACCAGAAGTGA 59.931 52.381 0.58 0.0 35.23 3.41 F
701 751 1.139058 AGATGGTCTGCCGATGGTAAC 59.861 52.381 0.00 0.0 37.67 2.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 1616 1.153389 GAGGAAGAGGAGCAGCAGC 60.153 63.158 0.0 0.0 42.56 5.25 R
2698 3938 0.254462 CTTTCCTTGCTCCTCTCCCC 59.746 60.000 0.0 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.908916 ACATGGTTCGGTTTATACGGG 58.091 47.619 0.00 0.00 0.00 5.28
25 26 3.072944 TGGTTCGGTTTATACGGGTTTG 58.927 45.455 0.00 0.00 0.00 2.93
35 36 2.181954 TACGGGTTTGCGGTTTGTAT 57.818 45.000 0.00 0.00 0.00 2.29
201 202 8.755696 TTTGCAAATGTATGACTCAAAATACC 57.244 30.769 8.05 0.00 0.00 2.73
202 203 7.459795 TGCAAATGTATGACTCAAAATACCA 57.540 32.000 0.00 0.00 0.00 3.25
204 205 8.363390 TGCAAATGTATGACTCAAAATACCAAA 58.637 29.630 0.00 0.00 0.00 3.28
249 297 5.399013 GTTATGGACGTGCTTAGCATTTTT 58.601 37.500 11.03 0.00 41.91 1.94
255 303 5.344933 GGACGTGCTTAGCATTTTTAAAAGG 59.655 40.000 11.03 0.00 41.91 3.11
261 309 8.783093 GTGCTTAGCATTTTTAAAAGGGAAAAT 58.217 29.630 11.03 0.00 41.91 1.82
279 329 8.536175 AGGGAAAATTGACTGTTACAAGAAAAA 58.464 29.630 0.00 0.00 0.00 1.94
292 342 9.440784 TGTTACAAGAAAAATTTACGTGCTTAG 57.559 29.630 0.00 0.00 0.00 2.18
353 403 7.173907 ACTTGTATGGTTGTTCATCTCAAGAAG 59.826 37.037 19.09 0.00 39.11 2.85
358 408 8.723942 ATGGTTGTTCATCTCAAGAAGTATAC 57.276 34.615 0.00 0.00 0.00 1.47
418 468 7.342194 CGTTCAGTTTTTCGGTATATACCATG 58.658 38.462 27.58 14.84 46.80 3.66
450 500 9.030301 CAAAGTTCAAATCGGTATGAAAAGTTT 57.970 29.630 0.00 0.00 37.31 2.66
468 518 7.999450 AAAGTTTATACCATACCGAAACCAA 57.001 32.000 0.00 0.00 31.74 3.67
472 522 9.027202 AGTTTATACCATACCGAAACCAAAAAT 57.973 29.630 0.00 0.00 31.74 1.82
503 553 6.935741 ACCATAAAATCGATTTGATTCGGA 57.064 33.333 23.38 4.69 46.65 4.55
513 563 7.471657 TCGATTTGATTCGGATTATTTTCGA 57.528 32.000 0.00 0.00 39.56 3.71
516 566 9.250986 CGATTTGATTCGGATTATTTTCGATAC 57.749 33.333 0.00 0.00 35.50 2.24
518 568 7.933728 TTGATTCGGATTATTTTCGATACGA 57.066 32.000 0.00 0.00 36.87 3.43
523 573 9.807386 ATTCGGATTATTTTCGATACGATTTTC 57.193 29.630 0.00 0.00 38.32 2.29
524 574 8.355272 TCGGATTATTTTCGATACGATTTTCA 57.645 30.769 0.00 0.00 33.92 2.69
525 575 8.819015 TCGGATTATTTTCGATACGATTTTCAA 58.181 29.630 0.00 0.00 33.92 2.69
526 576 9.428363 CGGATTATTTTCGATACGATTTTCAAA 57.572 29.630 0.00 0.00 35.23 2.69
530 580 9.561270 TTATTTTCGATACGATTTTCAAATGCA 57.439 25.926 0.00 0.00 35.23 3.96
531 581 6.846870 TTTCGATACGATTTTCAAATGCAC 57.153 33.333 0.00 0.00 35.23 4.57
532 582 5.538067 TCGATACGATTTTCAAATGCACA 57.462 34.783 0.00 0.00 0.00 4.57
533 583 5.559227 TCGATACGATTTTCAAATGCACAG 58.441 37.500 0.00 0.00 0.00 3.66
534 584 5.350091 TCGATACGATTTTCAAATGCACAGA 59.650 36.000 0.00 0.00 0.00 3.41
535 585 5.674148 CGATACGATTTTCAAATGCACAGAG 59.326 40.000 0.00 0.00 0.00 3.35
536 586 4.836125 ACGATTTTCAAATGCACAGAGT 57.164 36.364 0.00 0.00 0.00 3.24
537 587 4.539870 ACGATTTTCAAATGCACAGAGTG 58.460 39.130 0.00 0.00 36.51 3.51
538 588 4.275689 ACGATTTTCAAATGCACAGAGTGA 59.724 37.500 0.58 0.00 35.23 3.41
539 589 4.614284 CGATTTTCAAATGCACAGAGTGAC 59.386 41.667 0.58 0.00 35.23 3.67
540 590 3.988379 TTTCAAATGCACAGAGTGACC 57.012 42.857 0.58 0.00 35.23 4.02
541 591 2.636647 TCAAATGCACAGAGTGACCA 57.363 45.000 0.58 0.00 35.23 4.02
542 592 2.497138 TCAAATGCACAGAGTGACCAG 58.503 47.619 0.58 0.00 35.23 4.00
543 593 2.104622 TCAAATGCACAGAGTGACCAGA 59.895 45.455 0.58 0.00 35.23 3.86
544 594 2.880268 CAAATGCACAGAGTGACCAGAA 59.120 45.455 0.58 0.00 35.23 3.02
545 595 2.469274 ATGCACAGAGTGACCAGAAG 57.531 50.000 0.58 0.00 35.23 2.85
546 596 1.123077 TGCACAGAGTGACCAGAAGT 58.877 50.000 0.58 0.00 35.23 3.01
547 597 1.202568 TGCACAGAGTGACCAGAAGTG 60.203 52.381 0.58 0.00 35.23 3.16
548 598 1.069204 GCACAGAGTGACCAGAAGTGA 59.931 52.381 0.58 0.00 35.23 3.41
549 599 2.748605 CACAGAGTGACCAGAAGTGAC 58.251 52.381 0.00 0.00 35.23 3.67
550 600 2.363680 CACAGAGTGACCAGAAGTGACT 59.636 50.000 0.00 0.00 46.57 3.41
551 601 3.034635 ACAGAGTGACCAGAAGTGACTT 58.965 45.455 0.00 0.00 43.64 3.01
552 602 3.181471 ACAGAGTGACCAGAAGTGACTTG 60.181 47.826 0.90 0.00 43.64 3.16
553 603 2.366916 AGAGTGACCAGAAGTGACTTGG 59.633 50.000 0.90 1.45 43.64 3.61
571 621 1.741528 GGTGGTTACCATGGTTACGG 58.258 55.000 25.38 0.00 46.71 4.02
573 623 2.290197 GGTGGTTACCATGGTTACGGAA 60.290 50.000 25.38 7.95 46.71 4.30
574 624 3.004862 GTGGTTACCATGGTTACGGAAG 58.995 50.000 25.38 0.00 35.28 3.46
575 625 2.027007 TGGTTACCATGGTTACGGAAGG 60.027 50.000 25.38 0.00 0.00 3.46
576 626 2.236893 GGTTACCATGGTTACGGAAGGA 59.763 50.000 25.38 0.00 0.00 3.36
594 644 5.753438 GGAAGGATTTTGGTGTTTCTGTTTC 59.247 40.000 0.00 0.00 0.00 2.78
606 656 7.118422 GTGTTTCTGTTTCTACACCTATCAC 57.882 40.000 0.00 0.00 35.91 3.06
612 662 4.710375 TGTTTCTACACCTATCACCCTCTC 59.290 45.833 0.00 0.00 0.00 3.20
615 665 1.765230 ACACCTATCACCCTCTCGTC 58.235 55.000 0.00 0.00 0.00 4.20
617 667 1.678627 CACCTATCACCCTCTCGTCAG 59.321 57.143 0.00 0.00 0.00 3.51
619 669 1.950909 CCTATCACCCTCTCGTCAGAC 59.049 57.143 0.00 0.00 0.00 3.51
620 670 2.644676 CTATCACCCTCTCGTCAGACA 58.355 52.381 0.41 0.00 0.00 3.41
621 671 1.924731 ATCACCCTCTCGTCAGACAA 58.075 50.000 0.41 0.00 0.00 3.18
639 689 6.595326 TCAGACAATACAAGTGCCATCTTTAG 59.405 38.462 0.00 0.00 0.00 1.85
701 751 1.139058 AGATGGTCTGCCGATGGTAAC 59.861 52.381 0.00 0.00 37.67 2.50
730 780 5.568620 AGGAGTTTATCAACACTTGGTCT 57.431 39.130 0.00 0.00 35.05 3.85
742 793 1.759445 ACTTGGTCTCATCGATCCCTG 59.241 52.381 0.00 0.00 0.00 4.45
755 806 2.354510 CGATCCCTGCTAAAATTCGCAA 59.645 45.455 0.00 0.00 35.46 4.85
776 847 1.446099 CGTCCACACCACATCCGAG 60.446 63.158 0.00 0.00 0.00 4.63
836 910 3.855689 TCCAAGGTAGTACTACAACGC 57.144 47.619 29.38 15.13 37.78 4.84
837 911 2.162208 TCCAAGGTAGTACTACAACGCG 59.838 50.000 29.38 3.53 37.78 6.01
838 912 2.095059 CCAAGGTAGTACTACAACGCGT 60.095 50.000 29.38 5.58 37.78 6.01
839 913 3.568538 CAAGGTAGTACTACAACGCGTT 58.431 45.455 29.38 20.79 37.78 4.84
852 926 2.589442 GCGTTCGTTCACCCACCA 60.589 61.111 0.00 0.00 0.00 4.17
862 936 4.457603 TCGTTCACCCACCATCATAAAAAG 59.542 41.667 0.00 0.00 0.00 2.27
876 951 9.933723 CCATCATAAAAAGAGTCAAAAATCCTT 57.066 29.630 0.00 0.00 0.00 3.36
977 1052 2.487986 CCCACCCAATCAAGATCTAGCC 60.488 54.545 0.00 0.00 0.00 3.93
1033 1108 4.394712 CGCCCCCGTGCTTCTTCT 62.395 66.667 0.00 0.00 0.00 2.85
1275 1355 3.764466 CGGCTCCTGCTCGAGGTT 61.764 66.667 15.58 0.00 43.37 3.50
1536 1616 2.829003 TACCTCCTGGAGCGCTCG 60.829 66.667 29.81 17.55 37.04 5.03
1560 1640 1.306642 TGCTCCTCTTCCTCGACGTC 61.307 60.000 5.18 5.18 0.00 4.34
1922 2002 2.766229 GGAGGAGGAGGAGGTGGC 60.766 72.222 0.00 0.00 0.00 5.01
1966 2046 1.133699 CCAAGCTGCCCAATGGAGATA 60.134 52.381 0.00 0.00 34.82 1.98
1968 2048 0.107456 AGCTGCCCAATGGAGATACG 59.893 55.000 0.00 0.00 0.00 3.06
2074 2169 5.179182 CCATTGTTATGGTTTCAGCCAAAAC 59.821 40.000 3.53 3.53 45.34 2.43
2116 2218 9.787532 TTAACAAAGAACAGACAGAAAGAAATG 57.212 29.630 0.00 0.00 0.00 2.32
2117 2219 7.396540 ACAAAGAACAGACAGAAAGAAATGT 57.603 32.000 0.00 0.00 0.00 2.71
2122 2258 9.956720 AAGAACAGACAGAAAGAAATGTATTTG 57.043 29.630 0.00 0.00 0.00 2.32
2128 2264 9.342308 AGACAGAAAGAAATGTATTTGTCTTCA 57.658 29.630 0.00 0.00 27.75 3.02
2321 3538 2.240160 TCACCCATACCACCATACAACC 59.760 50.000 0.00 0.00 0.00 3.77
2327 3562 0.539986 ACCACCATACAACCGCCTAG 59.460 55.000 0.00 0.00 0.00 3.02
2385 3620 1.302033 CAGCGGGACAAAGACAGCT 60.302 57.895 0.00 0.00 35.06 4.24
2413 3652 8.948631 TGCTTCATAGAGGTTGTAATTAAGAG 57.051 34.615 0.00 0.00 0.00 2.85
2453 3692 9.715123 TTATTTAAATGATAAGCGTCACATGTG 57.285 29.630 20.18 20.18 0.00 3.21
2454 3693 6.735678 TTAAATGATAAGCGTCACATGTGT 57.264 33.333 24.63 8.38 0.00 3.72
2455 3694 4.604843 AATGATAAGCGTCACATGTGTG 57.395 40.909 24.63 18.72 46.91 3.82
2470 3709 4.888038 ATGTGTGACATGAATCAATCCG 57.112 40.909 0.00 0.00 37.45 4.18
2471 3710 3.009026 TGTGTGACATGAATCAATCCGG 58.991 45.455 0.00 0.00 0.00 5.14
2472 3711 3.009723 GTGTGACATGAATCAATCCGGT 58.990 45.455 0.00 0.00 0.00 5.28
2473 3712 3.440173 GTGTGACATGAATCAATCCGGTT 59.560 43.478 0.00 0.00 0.00 4.44
2474 3713 4.078537 TGTGACATGAATCAATCCGGTTT 58.921 39.130 0.00 0.00 0.00 3.27
2475 3714 4.522405 TGTGACATGAATCAATCCGGTTTT 59.478 37.500 0.00 0.00 0.00 2.43
2476 3715 5.707764 TGTGACATGAATCAATCCGGTTTTA 59.292 36.000 0.00 0.00 0.00 1.52
2477 3716 6.376864 TGTGACATGAATCAATCCGGTTTTAT 59.623 34.615 0.00 0.00 0.00 1.40
2478 3717 6.912591 GTGACATGAATCAATCCGGTTTTATC 59.087 38.462 0.00 0.00 0.00 1.75
2479 3718 6.601217 TGACATGAATCAATCCGGTTTTATCA 59.399 34.615 0.00 4.22 0.00 2.15
2480 3719 7.285172 TGACATGAATCAATCCGGTTTTATCAT 59.715 33.333 0.00 6.38 0.00 2.45
2481 3720 8.010733 ACATGAATCAATCCGGTTTTATCATT 57.989 30.769 0.00 0.00 0.00 2.57
2482 3721 8.477256 ACATGAATCAATCCGGTTTTATCATTT 58.523 29.630 0.00 0.12 0.00 2.32
2483 3722 9.316730 CATGAATCAATCCGGTTTTATCATTTT 57.683 29.630 0.00 0.00 0.00 1.82
2484 3723 9.889128 ATGAATCAATCCGGTTTTATCATTTTT 57.111 25.926 0.00 0.00 0.00 1.94
2509 3748 9.724839 TTTTAACTAAAGTTGTCATCCGAAAAG 57.275 29.630 5.62 0.00 38.90 2.27
2510 3749 8.665643 TTAACTAAAGTTGTCATCCGAAAAGA 57.334 30.769 5.62 0.00 38.90 2.52
2511 3750 7.562454 AACTAAAGTTGTCATCCGAAAAGAA 57.438 32.000 0.00 0.00 36.80 2.52
2512 3751 7.562454 ACTAAAGTTGTCATCCGAAAAGAAA 57.438 32.000 0.00 0.00 0.00 2.52
2513 3752 7.992008 ACTAAAGTTGTCATCCGAAAAGAAAA 58.008 30.769 0.00 0.00 0.00 2.29
2514 3753 8.463607 ACTAAAGTTGTCATCCGAAAAGAAAAA 58.536 29.630 0.00 0.00 0.00 1.94
2546 3785 9.724839 TTAAAACTAAAACTTGTCATCCGAAAG 57.275 29.630 0.00 0.00 0.00 2.62
2547 3786 7.562454 AAACTAAAACTTGTCATCCGAAAGA 57.438 32.000 0.00 0.00 0.00 2.52
2548 3787 7.562454 AACTAAAACTTGTCATCCGAAAGAA 57.438 32.000 0.00 0.00 0.00 2.52
2549 3788 7.562454 ACTAAAACTTGTCATCCGAAAGAAA 57.438 32.000 0.00 0.00 0.00 2.52
2550 3789 7.639945 ACTAAAACTTGTCATCCGAAAGAAAG 58.360 34.615 0.00 0.00 0.00 2.62
2551 3790 6.451064 AAAACTTGTCATCCGAAAGAAAGT 57.549 33.333 0.00 0.00 0.00 2.66
2552 3791 6.451064 AAACTTGTCATCCGAAAGAAAGTT 57.549 33.333 0.00 0.00 0.00 2.66
2553 3792 5.424121 ACTTGTCATCCGAAAGAAAGTTG 57.576 39.130 0.00 0.00 0.00 3.16
2554 3793 3.896648 TGTCATCCGAAAGAAAGTTGC 57.103 42.857 0.00 0.00 0.00 4.17
2555 3794 3.210227 TGTCATCCGAAAGAAAGTTGCA 58.790 40.909 0.00 0.00 0.00 4.08
2556 3795 3.629855 TGTCATCCGAAAGAAAGTTGCAA 59.370 39.130 0.00 0.00 0.00 4.08
2557 3796 4.097135 TGTCATCCGAAAGAAAGTTGCAAA 59.903 37.500 0.00 0.00 0.00 3.68
2558 3797 5.221224 TGTCATCCGAAAGAAAGTTGCAAAT 60.221 36.000 0.00 0.00 0.00 2.32
2559 3798 5.691754 GTCATCCGAAAGAAAGTTGCAAATT 59.308 36.000 6.26 6.26 0.00 1.82
2560 3799 6.200854 GTCATCCGAAAGAAAGTTGCAAATTT 59.799 34.615 23.52 23.52 0.00 1.82
2561 3800 5.964887 TCCGAAAGAAAGTTGCAAATTTG 57.035 34.783 27.64 14.03 0.00 2.32
2562 3801 5.415221 TCCGAAAGAAAGTTGCAAATTTGT 58.585 33.333 27.64 21.43 0.00 2.83
2563 3802 5.518487 TCCGAAAGAAAGTTGCAAATTTGTC 59.482 36.000 27.64 19.17 0.00 3.18
2564 3803 5.290643 CCGAAAGAAAGTTGCAAATTTGTCA 59.709 36.000 27.64 14.14 0.00 3.58
2565 3804 6.018832 CCGAAAGAAAGTTGCAAATTTGTCAT 60.019 34.615 27.64 16.39 0.00 3.06
2566 3805 7.168972 CCGAAAGAAAGTTGCAAATTTGTCATA 59.831 33.333 27.64 6.69 0.00 2.15
2567 3806 8.538856 CGAAAGAAAGTTGCAAATTTGTCATAA 58.461 29.630 27.64 7.45 0.00 1.90
2590 3829 6.469782 AAAAAGTTTGGAGTCATCATGTGT 57.530 33.333 0.00 0.00 0.00 3.72
2591 3830 6.469782 AAAAGTTTGGAGTCATCATGTGTT 57.530 33.333 0.00 0.00 0.00 3.32
2592 3831 6.469782 AAAGTTTGGAGTCATCATGTGTTT 57.530 33.333 0.00 0.00 0.00 2.83
2593 3832 5.443185 AGTTTGGAGTCATCATGTGTTTG 57.557 39.130 0.00 0.00 0.00 2.93
2594 3833 4.889409 AGTTTGGAGTCATCATGTGTTTGT 59.111 37.500 0.00 0.00 0.00 2.83
2595 3834 4.834357 TTGGAGTCATCATGTGTTTGTG 57.166 40.909 0.00 0.00 0.00 3.33
2596 3835 3.819368 TGGAGTCATCATGTGTTTGTGT 58.181 40.909 0.00 0.00 0.00 3.72
2597 3836 3.814842 TGGAGTCATCATGTGTTTGTGTC 59.185 43.478 0.00 0.00 0.00 3.67
2598 3837 3.814842 GGAGTCATCATGTGTTTGTGTCA 59.185 43.478 0.00 0.00 0.00 3.58
2599 3838 4.319766 GGAGTCATCATGTGTTTGTGTCAC 60.320 45.833 0.00 0.00 36.48 3.67
2601 3840 4.035558 AGTCATCATGTGTTTGTGTCACAC 59.964 41.667 4.80 0.00 46.26 3.82
2620 3859 8.291888 GTCACACATATGACACTTATCAGATC 57.708 38.462 10.38 0.00 46.89 2.75
2621 3860 7.383572 GTCACACATATGACACTTATCAGATCC 59.616 40.741 10.38 0.00 46.89 3.36
2656 3895 3.489785 CGCGGAGACAAAGACCATAATAC 59.510 47.826 0.00 0.00 0.00 1.89
2698 3938 0.650512 CCGGTACATGCTTAGCAACG 59.349 55.000 12.08 8.27 43.62 4.10
2736 3976 7.876371 AGGAAAGAATGGAAAGATAATCCTGA 58.124 34.615 0.00 0.00 37.85 3.86
2737 3977 7.777440 AGGAAAGAATGGAAAGATAATCCTGAC 59.223 37.037 0.00 0.00 37.85 3.51
2806 4046 1.571460 CTCGTGGAGCAAAGCACAC 59.429 57.895 6.73 6.73 36.09 3.82
2907 4588 1.830587 AAGCTGAGGGCATGACACGA 61.831 55.000 0.00 0.00 44.79 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 8.400186 AGTATTAATACCATACAAACCGCAAAC 58.600 33.333 19.74 0.00 33.79 2.93
25 26 7.285788 CGAAGTATTAATACCATACAAACCGC 58.714 38.462 19.74 0.00 33.79 5.68
67 68 7.880105 ACCGAAACCAAACCGTATTTTAATTA 58.120 30.769 0.00 0.00 0.00 1.40
138 139 2.128821 TCAAATTCGCGTCAACTTCGA 58.871 42.857 5.77 0.00 0.00 3.71
140 141 5.398122 TCATTTTCAAATTCGCGTCAACTTC 59.602 36.000 5.77 0.00 0.00 3.01
210 211 8.527810 ACGTCCATAACCATAAACAAATTCAAT 58.472 29.630 0.00 0.00 0.00 2.57
211 212 7.810282 CACGTCCATAACCATAAACAAATTCAA 59.190 33.333 0.00 0.00 0.00 2.69
212 213 7.309177 CACGTCCATAACCATAAACAAATTCA 58.691 34.615 0.00 0.00 0.00 2.57
213 214 6.252655 GCACGTCCATAACCATAAACAAATTC 59.747 38.462 0.00 0.00 0.00 2.17
214 215 6.071616 AGCACGTCCATAACCATAAACAAATT 60.072 34.615 0.00 0.00 0.00 1.82
216 217 4.762765 AGCACGTCCATAACCATAAACAAA 59.237 37.500 0.00 0.00 0.00 2.83
217 218 4.328536 AGCACGTCCATAACCATAAACAA 58.671 39.130 0.00 0.00 0.00 2.83
219 220 4.957759 AAGCACGTCCATAACCATAAAC 57.042 40.909 0.00 0.00 0.00 2.01
220 221 4.573201 GCTAAGCACGTCCATAACCATAAA 59.427 41.667 0.00 0.00 0.00 1.40
222 223 3.133183 TGCTAAGCACGTCCATAACCATA 59.867 43.478 0.00 0.00 31.71 2.74
249 297 9.191479 TCTTGTAACAGTCAATTTTCCCTTTTA 57.809 29.630 0.00 0.00 0.00 1.52
261 309 9.279904 CACGTAAATTTTTCTTGTAACAGTCAA 57.720 29.630 0.00 0.00 0.00 3.18
279 329 9.769093 GTCAAATTCAATACTAAGCACGTAAAT 57.231 29.630 0.00 0.00 0.00 1.40
285 335 8.454106 ACATGAGTCAAATTCAATACTAAGCAC 58.546 33.333 0.00 0.00 0.00 4.40
418 468 7.142680 TCATACCGATTTGAACTTTGGTTTTC 58.857 34.615 0.00 0.00 35.58 2.29
450 500 8.754991 ATGATTTTTGGTTTCGGTATGGTATA 57.245 30.769 0.00 0.00 0.00 1.47
492 542 8.984764 TCGTATCGAAAATAATCCGAATCAAAT 58.015 29.630 0.00 0.00 35.87 2.32
495 545 8.528917 AATCGTATCGAAAATAATCCGAATCA 57.471 30.769 0.00 0.00 39.99 2.57
497 547 9.807386 GAAAATCGTATCGAAAATAATCCGAAT 57.193 29.630 0.00 0.00 39.99 3.34
513 563 6.149308 TCACTCTGTGCATTTGAAAATCGTAT 59.851 34.615 0.00 0.00 32.98 3.06
516 566 4.614284 GTCACTCTGTGCATTTGAAAATCG 59.386 41.667 0.00 0.00 32.98 3.34
518 568 4.341806 TGGTCACTCTGTGCATTTGAAAAT 59.658 37.500 0.00 0.00 32.98 1.82
523 573 2.497138 TCTGGTCACTCTGTGCATTTG 58.503 47.619 0.00 0.00 32.98 2.32
524 574 2.936919 TCTGGTCACTCTGTGCATTT 57.063 45.000 0.00 0.00 32.98 2.32
525 575 2.105477 ACTTCTGGTCACTCTGTGCATT 59.895 45.455 0.00 0.00 32.98 3.56
526 576 1.696336 ACTTCTGGTCACTCTGTGCAT 59.304 47.619 0.00 0.00 32.98 3.96
527 577 1.123077 ACTTCTGGTCACTCTGTGCA 58.877 50.000 0.00 0.00 32.98 4.57
528 578 1.069204 TCACTTCTGGTCACTCTGTGC 59.931 52.381 0.00 0.00 32.98 4.57
529 579 2.363680 AGTCACTTCTGGTCACTCTGTG 59.636 50.000 0.00 0.00 34.45 3.66
530 580 2.672098 AGTCACTTCTGGTCACTCTGT 58.328 47.619 0.00 0.00 0.00 3.41
531 581 3.388308 CAAGTCACTTCTGGTCACTCTG 58.612 50.000 0.00 0.00 0.00 3.35
532 582 2.366916 CCAAGTCACTTCTGGTCACTCT 59.633 50.000 0.00 0.00 0.00 3.24
533 583 2.103263 ACCAAGTCACTTCTGGTCACTC 59.897 50.000 0.00 0.00 0.00 3.51
534 584 2.119495 ACCAAGTCACTTCTGGTCACT 58.881 47.619 0.00 0.00 0.00 3.41
535 585 2.213499 CACCAAGTCACTTCTGGTCAC 58.787 52.381 0.00 0.00 0.00 3.67
536 586 1.140852 CCACCAAGTCACTTCTGGTCA 59.859 52.381 0.00 0.00 0.00 4.02
537 587 1.141053 ACCACCAAGTCACTTCTGGTC 59.859 52.381 9.83 0.00 30.11 4.02
538 588 1.213296 ACCACCAAGTCACTTCTGGT 58.787 50.000 9.83 9.83 30.76 4.00
539 589 2.348411 AACCACCAAGTCACTTCTGG 57.652 50.000 8.71 8.71 0.00 3.86
540 590 3.139077 GGTAACCACCAAGTCACTTCTG 58.861 50.000 0.00 0.00 45.04 3.02
541 591 3.487120 GGTAACCACCAAGTCACTTCT 57.513 47.619 0.00 0.00 45.04 2.85
552 602 1.278699 TCCGTAACCATGGTAACCACC 59.721 52.381 20.12 1.69 46.00 4.61
553 603 2.766345 TCCGTAACCATGGTAACCAC 57.234 50.000 20.12 12.68 35.80 4.16
561 611 3.761752 ACCAAAATCCTTCCGTAACCATG 59.238 43.478 0.00 0.00 0.00 3.66
568 618 3.317993 CAGAAACACCAAAATCCTTCCGT 59.682 43.478 0.00 0.00 0.00 4.69
571 621 6.573434 AGAAACAGAAACACCAAAATCCTTC 58.427 36.000 0.00 0.00 0.00 3.46
573 623 6.605594 TGTAGAAACAGAAACACCAAAATCCT 59.394 34.615 0.00 0.00 0.00 3.24
574 624 6.695713 GTGTAGAAACAGAAACACCAAAATCC 59.304 38.462 0.00 0.00 36.97 3.01
575 625 7.679659 GTGTAGAAACAGAAACACCAAAATC 57.320 36.000 0.00 0.00 36.97 2.17
594 644 2.879646 GACGAGAGGGTGATAGGTGTAG 59.120 54.545 0.00 0.00 0.00 2.74
603 653 1.924731 ATTGTCTGACGAGAGGGTGA 58.075 50.000 3.80 0.00 0.00 4.02
606 656 3.193691 ACTTGTATTGTCTGACGAGAGGG 59.806 47.826 3.80 0.00 32.29 4.30
612 662 2.412870 TGGCACTTGTATTGTCTGACG 58.587 47.619 2.98 0.00 0.00 4.35
615 665 5.633830 AAAGATGGCACTTGTATTGTCTG 57.366 39.130 0.00 0.00 0.00 3.51
617 667 6.985188 TCTAAAGATGGCACTTGTATTGTC 57.015 37.500 0.00 0.00 0.00 3.18
619 669 6.599244 TCCTTCTAAAGATGGCACTTGTATTG 59.401 38.462 6.97 0.00 38.74 1.90
620 670 6.721318 TCCTTCTAAAGATGGCACTTGTATT 58.279 36.000 6.97 0.00 38.74 1.89
621 671 6.313519 TCCTTCTAAAGATGGCACTTGTAT 57.686 37.500 6.97 0.00 38.74 2.29
639 689 9.699703 GACCACAGTTCTATAATTCTATCCTTC 57.300 37.037 0.00 0.00 0.00 3.46
663 713 4.081198 CCATCTAGATATTCAGGGGCAGAC 60.081 50.000 4.54 0.00 0.00 3.51
701 751 6.287589 AGTGTTGATAAACTCCTACTCTGG 57.712 41.667 0.00 0.00 0.00 3.86
730 780 4.058124 CGAATTTTAGCAGGGATCGATGA 58.942 43.478 0.54 0.00 0.00 2.92
742 793 1.535088 GACGGCTTGCGAATTTTAGC 58.465 50.000 0.00 0.00 0.00 3.09
755 806 2.347490 GATGTGGTGTGGACGGCT 59.653 61.111 0.00 0.00 0.00 5.52
776 847 2.007608 GTTGGACTTGGATTAGACCGC 58.992 52.381 0.00 0.00 33.43 5.68
836 910 0.601576 TGATGGTGGGTGAACGAACG 60.602 55.000 0.00 0.00 0.00 3.95
837 911 1.821216 ATGATGGTGGGTGAACGAAC 58.179 50.000 0.00 0.00 0.00 3.95
838 912 3.704800 TTATGATGGTGGGTGAACGAA 57.295 42.857 0.00 0.00 0.00 3.85
839 913 3.704800 TTTATGATGGTGGGTGAACGA 57.295 42.857 0.00 0.00 0.00 3.85
876 951 3.192466 GGAACGGCGAGCTTATAAAGAA 58.808 45.455 16.62 0.00 0.00 2.52
1020 1095 0.391793 GGAAGGAGAAGAAGCACGGG 60.392 60.000 0.00 0.00 0.00 5.28
1033 1108 2.347490 GCCGTGCTTGAGGAAGGA 59.653 61.111 8.54 0.00 37.20 3.36
1363 1443 4.471726 GGCGTCGTCGTCATCGGT 62.472 66.667 0.88 0.00 41.67 4.69
1536 1616 1.153389 GAGGAAGAGGAGCAGCAGC 60.153 63.158 0.00 0.00 42.56 5.25
1852 1932 2.654877 GGCCTCGACGGAGAACAA 59.345 61.111 0.00 0.00 43.27 2.83
1922 2002 4.624364 TGTGTCTGTGGGCTGCCG 62.624 66.667 13.40 0.00 0.00 5.69
1936 2016 1.709147 GGCAGCTTGGCGTATCTGTG 61.709 60.000 0.00 0.00 31.79 3.66
1966 2046 3.503827 TCGAACATCAGCTATTCACGT 57.496 42.857 0.00 0.00 0.00 4.49
1968 2048 5.973651 TTGATCGAACATCAGCTATTCAC 57.026 39.130 0.00 0.00 0.00 3.18
2274 3491 2.205074 GGCTGGTAGTTCATGTCATCG 58.795 52.381 0.00 0.00 0.00 3.84
2427 3666 9.715123 CACATGTGACGCTTATCATTTAAATAA 57.285 29.630 21.64 0.00 0.00 1.40
2428 3667 8.888716 ACACATGTGACGCTTATCATTTAAATA 58.111 29.630 31.94 0.00 0.00 1.40
2429 3668 7.761409 ACACATGTGACGCTTATCATTTAAAT 58.239 30.769 31.94 0.00 0.00 1.40
2430 3669 7.139896 ACACATGTGACGCTTATCATTTAAA 57.860 32.000 31.94 0.00 0.00 1.52
2431 3670 6.735678 ACACATGTGACGCTTATCATTTAA 57.264 33.333 31.94 0.00 0.00 1.52
2449 3688 3.628942 CCGGATTGATTCATGTCACACAT 59.371 43.478 0.00 0.00 39.91 3.21
2450 3689 3.009026 CCGGATTGATTCATGTCACACA 58.991 45.455 0.00 0.00 0.00 3.72
2451 3690 3.009723 ACCGGATTGATTCATGTCACAC 58.990 45.455 9.46 0.00 0.00 3.82
2452 3691 3.348647 ACCGGATTGATTCATGTCACA 57.651 42.857 9.46 0.00 0.00 3.58
2453 3692 4.701956 AAACCGGATTGATTCATGTCAC 57.298 40.909 9.46 0.00 0.00 3.67
2454 3693 6.601217 TGATAAAACCGGATTGATTCATGTCA 59.399 34.615 9.46 0.00 0.00 3.58
2455 3694 7.026631 TGATAAAACCGGATTGATTCATGTC 57.973 36.000 9.46 0.00 0.00 3.06
2456 3695 7.587037 ATGATAAAACCGGATTGATTCATGT 57.413 32.000 9.46 0.00 0.00 3.21
2457 3696 8.876275 AAATGATAAAACCGGATTGATTCATG 57.124 30.769 9.46 0.00 0.00 3.07
2458 3697 9.889128 AAAAATGATAAAACCGGATTGATTCAT 57.111 25.926 9.46 9.65 0.00 2.57
2483 3722 9.724839 CTTTTCGGATGACAACTTTAGTTAAAA 57.275 29.630 0.00 0.00 36.32 1.52
2484 3723 9.111613 TCTTTTCGGATGACAACTTTAGTTAAA 57.888 29.630 0.00 0.00 36.32 1.52
2485 3724 8.665643 TCTTTTCGGATGACAACTTTAGTTAA 57.334 30.769 0.00 0.00 36.32 2.01
2486 3725 8.665643 TTCTTTTCGGATGACAACTTTAGTTA 57.334 30.769 0.00 0.00 36.32 2.24
2487 3726 7.562454 TTCTTTTCGGATGACAACTTTAGTT 57.438 32.000 0.00 0.00 39.12 2.24
2488 3727 7.562454 TTTCTTTTCGGATGACAACTTTAGT 57.438 32.000 0.00 0.00 0.00 2.24
2489 3728 8.850454 TTTTTCTTTTCGGATGACAACTTTAG 57.150 30.769 0.00 0.00 0.00 1.85
2520 3759 9.724839 CTTTCGGATGACAAGTTTTAGTTTTAA 57.275 29.630 0.00 0.00 0.00 1.52
2521 3760 9.111613 TCTTTCGGATGACAAGTTTTAGTTTTA 57.888 29.630 0.00 0.00 0.00 1.52
2522 3761 7.992008 TCTTTCGGATGACAAGTTTTAGTTTT 58.008 30.769 0.00 0.00 0.00 2.43
2523 3762 7.562454 TCTTTCGGATGACAAGTTTTAGTTT 57.438 32.000 0.00 0.00 0.00 2.66
2524 3763 7.562454 TTCTTTCGGATGACAAGTTTTAGTT 57.438 32.000 0.00 0.00 0.00 2.24
2525 3764 7.282450 ACTTTCTTTCGGATGACAAGTTTTAGT 59.718 33.333 3.10 0.00 0.00 2.24
2526 3765 7.639945 ACTTTCTTTCGGATGACAAGTTTTAG 58.360 34.615 3.10 0.00 0.00 1.85
2527 3766 7.562454 ACTTTCTTTCGGATGACAAGTTTTA 57.438 32.000 3.10 0.00 0.00 1.52
2528 3767 6.451064 ACTTTCTTTCGGATGACAAGTTTT 57.549 33.333 3.10 0.00 0.00 2.43
2529 3768 6.265577 CAACTTTCTTTCGGATGACAAGTTT 58.734 36.000 12.81 3.04 32.07 2.66
2530 3769 5.733373 GCAACTTTCTTTCGGATGACAAGTT 60.733 40.000 11.02 11.02 34.16 2.66
2531 3770 4.261197 GCAACTTTCTTTCGGATGACAAGT 60.261 41.667 3.10 3.10 0.00 3.16
2532 3771 4.222114 GCAACTTTCTTTCGGATGACAAG 58.778 43.478 0.00 0.00 0.00 3.16
2533 3772 3.629855 TGCAACTTTCTTTCGGATGACAA 59.370 39.130 0.00 0.00 0.00 3.18
2534 3773 3.210227 TGCAACTTTCTTTCGGATGACA 58.790 40.909 0.00 0.00 0.00 3.58
2535 3774 3.896648 TGCAACTTTCTTTCGGATGAC 57.103 42.857 0.00 0.00 0.00 3.06
2536 3775 4.909696 TTTGCAACTTTCTTTCGGATGA 57.090 36.364 0.00 0.00 0.00 2.92
2537 3776 6.018832 ACAAATTTGCAACTTTCTTTCGGATG 60.019 34.615 18.12 1.95 0.00 3.51
2538 3777 6.048509 ACAAATTTGCAACTTTCTTTCGGAT 58.951 32.000 18.12 0.00 0.00 4.18
2539 3778 5.415221 ACAAATTTGCAACTTTCTTTCGGA 58.585 33.333 18.12 0.00 0.00 4.55
2540 3779 5.290643 TGACAAATTTGCAACTTTCTTTCGG 59.709 36.000 18.12 3.27 0.00 4.30
2541 3780 6.329838 TGACAAATTTGCAACTTTCTTTCG 57.670 33.333 18.12 3.90 0.00 3.46
2567 3806 6.469782 ACACATGATGACTCCAAACTTTTT 57.530 33.333 0.00 0.00 0.00 1.94
2568 3807 6.469782 AACACATGATGACTCCAAACTTTT 57.530 33.333 0.00 0.00 0.00 2.27
2569 3808 6.127366 ACAAACACATGATGACTCCAAACTTT 60.127 34.615 0.00 0.00 0.00 2.66
2570 3809 5.360714 ACAAACACATGATGACTCCAAACTT 59.639 36.000 0.00 0.00 0.00 2.66
2571 3810 4.889409 ACAAACACATGATGACTCCAAACT 59.111 37.500 0.00 0.00 0.00 2.66
2572 3811 4.977963 CACAAACACATGATGACTCCAAAC 59.022 41.667 0.00 0.00 0.00 2.93
2573 3812 4.644234 ACACAAACACATGATGACTCCAAA 59.356 37.500 0.00 0.00 0.00 3.28
2574 3813 4.206375 ACACAAACACATGATGACTCCAA 58.794 39.130 0.00 0.00 0.00 3.53
2575 3814 3.814842 GACACAAACACATGATGACTCCA 59.185 43.478 0.00 0.00 0.00 3.86
2576 3815 3.814842 TGACACAAACACATGATGACTCC 59.185 43.478 0.00 0.00 0.00 3.85
2577 3816 4.273235 TGTGACACAAACACATGATGACTC 59.727 41.667 5.62 0.00 42.20 3.36
2578 3817 4.198530 TGTGACACAAACACATGATGACT 58.801 39.130 5.62 0.00 42.20 3.41
2579 3818 4.550577 TGTGACACAAACACATGATGAC 57.449 40.909 5.62 0.00 42.20 3.06
2595 3834 7.383572 GGATCTGATAAGTGTCATATGTGTGAC 59.616 40.741 1.90 3.29 46.75 3.67
2596 3835 7.069826 TGGATCTGATAAGTGTCATATGTGTGA 59.930 37.037 1.90 0.00 0.00 3.58
2597 3836 7.212274 TGGATCTGATAAGTGTCATATGTGTG 58.788 38.462 1.90 0.00 0.00 3.82
2598 3837 7.365497 TGGATCTGATAAGTGTCATATGTGT 57.635 36.000 1.90 0.00 0.00 3.72
2599 3838 8.843885 ATTGGATCTGATAAGTGTCATATGTG 57.156 34.615 1.90 0.00 0.00 3.21
2609 3848 9.284968 CGGGTTTAATTATTGGATCTGATAAGT 57.715 33.333 0.00 0.36 0.00 2.24
2610 3849 8.237267 GCGGGTTTAATTATTGGATCTGATAAG 58.763 37.037 0.00 0.00 0.00 1.73
2611 3850 7.094975 CGCGGGTTTAATTATTGGATCTGATAA 60.095 37.037 0.00 0.00 0.00 1.75
2612 3851 6.370442 CGCGGGTTTAATTATTGGATCTGATA 59.630 38.462 0.00 0.00 0.00 2.15
2613 3852 5.181245 CGCGGGTTTAATTATTGGATCTGAT 59.819 40.000 0.00 0.00 0.00 2.90
2614 3853 4.513692 CGCGGGTTTAATTATTGGATCTGA 59.486 41.667 0.00 0.00 0.00 3.27
2615 3854 4.320202 CCGCGGGTTTAATTATTGGATCTG 60.320 45.833 20.10 0.00 0.00 2.90
2616 3855 3.818773 CCGCGGGTTTAATTATTGGATCT 59.181 43.478 20.10 0.00 0.00 2.75
2617 3856 3.816523 TCCGCGGGTTTAATTATTGGATC 59.183 43.478 27.83 0.00 0.00 3.36
2618 3857 3.818773 CTCCGCGGGTTTAATTATTGGAT 59.181 43.478 27.83 0.00 0.00 3.41
2619 3858 3.118334 TCTCCGCGGGTTTAATTATTGGA 60.118 43.478 27.83 0.00 0.00 3.53
2620 3859 3.002965 GTCTCCGCGGGTTTAATTATTGG 59.997 47.826 27.83 0.00 0.00 3.16
2621 3860 3.623960 TGTCTCCGCGGGTTTAATTATTG 59.376 43.478 27.83 0.00 0.00 1.90
2677 3917 2.352388 GTTGCTAAGCATGTACCGGAA 58.648 47.619 9.46 0.00 38.76 4.30
2698 3938 0.254462 CTTTCCTTGCTCCTCTCCCC 59.746 60.000 0.00 0.00 0.00 4.81
2806 4046 1.300233 GCGAGGCCTAGTGGAATCG 60.300 63.158 14.88 8.53 42.17 3.34
2938 4619 5.199024 TGCACAGCAACACTATCAAATTT 57.801 34.783 0.00 0.00 34.76 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.