Multiple sequence alignment - TraesCS2A01G102400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G102400 chr2A 100.000 3122 0 0 1 3122 55865547 55862426 0.000000e+00 5766.0
1 TraesCS2A01G102400 chr2A 91.463 82 7 0 70 151 724606501 724606582 2.540000e-21 113.0
2 TraesCS2A01G102400 chr2A 98.182 55 1 0 92 146 724607765 724607819 2.560000e-16 97.1
3 TraesCS2A01G102400 chr2B 97.295 2255 50 7 152 2399 86688209 86690459 0.000000e+00 3816.0
4 TraesCS2A01G102400 chr2D 96.072 2342 58 18 152 2477 55142596 55140273 0.000000e+00 3784.0
5 TraesCS2A01G102400 chr2D 91.620 179 11 3 2642 2819 55139718 55139543 8.650000e-61 244.0
6 TraesCS2A01G102400 chr2D 91.538 130 9 1 2463 2590 55140250 55140121 8.900000e-41 178.0
7 TraesCS2A01G102400 chr1D 91.795 2011 95 36 638 2630 394271200 394273158 0.000000e+00 2736.0
8 TraesCS2A01G102400 chr1D 93.396 318 11 4 327 637 394270802 394271116 2.190000e-126 462.0
9 TraesCS2A01G102400 chr1B 93.820 1618 76 16 638 2249 527834242 527832643 0.000000e+00 2412.0
10 TraesCS2A01G102400 chr1B 95.455 308 14 0 330 637 527834631 527834324 2.800000e-135 492.0
11 TraesCS2A01G102400 chr1B 85.326 368 34 15 2270 2630 527832651 527832297 2.290000e-96 363.0
12 TraesCS2A01G102400 chr1A 93.630 832 31 8 1381 2211 491136168 491135358 0.000000e+00 1223.0
13 TraesCS2A01G102400 chr1A 95.582 747 23 6 638 1382 491137067 491136329 0.000000e+00 1188.0
14 TraesCS2A01G102400 chr1A 96.104 308 11 1 330 637 491137458 491137152 4.650000e-138 501.0
15 TraesCS2A01G102400 chr1A 85.067 375 32 18 2268 2631 491135335 491134974 8.230000e-96 361.0
16 TraesCS2A01G102400 chr1A 92.818 181 13 0 152 332 491138914 491138734 2.390000e-66 263.0
17 TraesCS2A01G102400 chr7D 89.342 319 33 1 860 1177 382365405 382365087 1.740000e-107 399.0
18 TraesCS2A01G102400 chr5D 88.401 319 36 1 860 1177 32410506 32410824 1.760000e-102 383.0
19 TraesCS2A01G102400 chr3B 85.551 263 25 5 2869 3120 89426824 89427084 2.390000e-66 263.0
20 TraesCS2A01G102400 chr3B 85.657 251 27 6 2874 3122 97760200 97759957 4.000000e-64 255.0
21 TraesCS2A01G102400 chr4B 85.771 253 26 6 2872 3122 154864877 154864633 3.090000e-65 259.0
22 TraesCS2A01G102400 chr6B 84.962 266 25 6 2869 3122 130933772 130934034 4.000000e-64 255.0
23 TraesCS2A01G102400 chr6B 84.332 217 31 3 2907 3122 8391439 8391653 3.160000e-50 209.0
24 TraesCS2A01G102400 chr6B 89.041 146 15 1 2978 3122 8391213 8391358 2.470000e-41 180.0
25 TraesCS2A01G102400 chr7A 87.179 195 25 0 860 1054 121334427 121334233 4.050000e-54 222.0
26 TraesCS2A01G102400 chr5B 86.154 195 26 1 860 1053 577886430 577886624 3.160000e-50 209.0
27 TraesCS2A01G102400 chr5B 93.846 65 4 0 1502 1566 577886636 577886700 7.130000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G102400 chr2A 55862426 55865547 3121 True 5766.0 5766 100.000000 1 3122 1 chr2A.!!$R1 3121
1 TraesCS2A01G102400 chr2B 86688209 86690459 2250 False 3816.0 3816 97.295000 152 2399 1 chr2B.!!$F1 2247
2 TraesCS2A01G102400 chr2D 55139543 55142596 3053 True 1402.0 3784 93.076667 152 2819 3 chr2D.!!$R1 2667
3 TraesCS2A01G102400 chr1D 394270802 394273158 2356 False 1599.0 2736 92.595500 327 2630 2 chr1D.!!$F1 2303
4 TraesCS2A01G102400 chr1B 527832297 527834631 2334 True 1089.0 2412 91.533667 330 2630 3 chr1B.!!$R1 2300
5 TraesCS2A01G102400 chr1A 491134974 491138914 3940 True 707.2 1223 92.640200 152 2631 5 chr1A.!!$R1 2479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 125 0.378257 CACCAGTGTGTGTGCTTGAC 59.622 55.0 4.18 0.0 37.72 3.18 F
258 259 0.540365 CCATCCCCATTAGCGGCAAT 60.540 55.0 1.45 0.0 0.00 3.56 F
1520 3070 0.951558 GTTTGATGTTCGTGGTGCCT 59.048 50.0 0.00 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1159 2546 0.674895 AACTGCCTTCTGATGGACGC 60.675 55.0 13.34 0.0 0.00 5.19 R
1801 3351 1.172812 GGTCCGCAAAGGCAGAAACT 61.173 55.0 0.00 0.0 41.24 2.66 R
2829 4812 0.511221 CCGACGTGCGATTCTTTTGT 59.489 50.0 0.00 0.0 44.57 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.499106 TCAGTATCACATCTCTCTCTCTCT 57.501 41.667 0.00 0.00 0.00 3.10
24 25 6.524734 TCAGTATCACATCTCTCTCTCTCTC 58.475 44.000 0.00 0.00 0.00 3.20
25 26 6.327365 TCAGTATCACATCTCTCTCTCTCTCT 59.673 42.308 0.00 0.00 0.00 3.10
26 27 6.648310 CAGTATCACATCTCTCTCTCTCTCTC 59.352 46.154 0.00 0.00 0.00 3.20
27 28 5.901413 ATCACATCTCTCTCTCTCTCTCT 57.099 43.478 0.00 0.00 0.00 3.10
28 29 5.282055 TCACATCTCTCTCTCTCTCTCTC 57.718 47.826 0.00 0.00 0.00 3.20
29 30 4.053983 CACATCTCTCTCTCTCTCTCTCG 58.946 52.174 0.00 0.00 0.00 4.04
30 31 2.890808 TCTCTCTCTCTCTCTCTCGC 57.109 55.000 0.00 0.00 0.00 5.03
31 32 2.388735 TCTCTCTCTCTCTCTCTCGCT 58.611 52.381 0.00 0.00 0.00 4.93
32 33 2.362397 TCTCTCTCTCTCTCTCTCGCTC 59.638 54.545 0.00 0.00 0.00 5.03
33 34 1.067060 TCTCTCTCTCTCTCTCGCTCG 59.933 57.143 0.00 0.00 0.00 5.03
34 35 0.529773 TCTCTCTCTCTCTCGCTCGC 60.530 60.000 0.00 0.00 0.00 5.03
35 36 0.530650 CTCTCTCTCTCTCGCTCGCT 60.531 60.000 0.00 0.00 0.00 4.93
36 37 0.529773 TCTCTCTCTCTCGCTCGCTC 60.530 60.000 0.00 0.00 0.00 5.03
37 38 1.821241 CTCTCTCTCTCGCTCGCTCG 61.821 65.000 0.00 0.00 0.00 5.03
38 39 3.506312 CTCTCTCTCGCTCGCTCGC 62.506 68.421 0.00 0.00 0.00 5.03
39 40 3.572539 CTCTCTCGCTCGCTCGCT 61.573 66.667 0.00 0.00 0.00 4.93
40 41 3.506312 CTCTCTCGCTCGCTCGCTC 62.506 68.421 0.00 0.00 0.00 5.03
41 42 3.572539 CTCTCGCTCGCTCGCTCT 61.573 66.667 0.00 0.00 0.00 4.09
42 43 3.506312 CTCTCGCTCGCTCGCTCTC 62.506 68.421 0.00 0.00 0.00 3.20
43 44 3.572539 CTCGCTCGCTCGCTCTCT 61.573 66.667 0.00 0.00 0.00 3.10
44 45 3.506312 CTCGCTCGCTCGCTCTCTC 62.506 68.421 0.00 0.00 0.00 3.20
45 46 3.572539 CGCTCGCTCGCTCTCTCT 61.573 66.667 0.00 0.00 0.00 3.10
46 47 2.798009 GCTCGCTCGCTCTCTCTT 59.202 61.111 0.00 0.00 0.00 2.85
47 48 1.138671 GCTCGCTCGCTCTCTCTTT 59.861 57.895 0.00 0.00 0.00 2.52
48 49 0.378962 GCTCGCTCGCTCTCTCTTTA 59.621 55.000 0.00 0.00 0.00 1.85
49 50 1.001815 GCTCGCTCGCTCTCTCTTTAT 60.002 52.381 0.00 0.00 0.00 1.40
50 51 2.916111 CTCGCTCGCTCTCTCTTTATC 58.084 52.381 0.00 0.00 0.00 1.75
51 52 2.548057 CTCGCTCGCTCTCTCTTTATCT 59.452 50.000 0.00 0.00 0.00 1.98
52 53 3.729966 TCGCTCGCTCTCTCTTTATCTA 58.270 45.455 0.00 0.00 0.00 1.98
53 54 4.320023 TCGCTCGCTCTCTCTTTATCTAT 58.680 43.478 0.00 0.00 0.00 1.98
54 55 4.390603 TCGCTCGCTCTCTCTTTATCTATC 59.609 45.833 0.00 0.00 0.00 2.08
55 56 4.391830 CGCTCGCTCTCTCTTTATCTATCT 59.608 45.833 0.00 0.00 0.00 1.98
56 57 5.445939 CGCTCGCTCTCTCTTTATCTATCTC 60.446 48.000 0.00 0.00 0.00 2.75
57 58 5.163754 GCTCGCTCTCTCTTTATCTATCTCC 60.164 48.000 0.00 0.00 0.00 3.71
58 59 5.870706 TCGCTCTCTCTTTATCTATCTCCA 58.129 41.667 0.00 0.00 0.00 3.86
59 60 6.480763 TCGCTCTCTCTTTATCTATCTCCAT 58.519 40.000 0.00 0.00 0.00 3.41
60 61 6.374053 TCGCTCTCTCTTTATCTATCTCCATG 59.626 42.308 0.00 0.00 0.00 3.66
61 62 6.404623 CGCTCTCTCTTTATCTATCTCCATGG 60.405 46.154 4.97 4.97 0.00 3.66
62 63 6.437162 GCTCTCTCTTTATCTATCTCCATGGT 59.563 42.308 12.58 0.00 0.00 3.55
63 64 7.362920 GCTCTCTCTTTATCTATCTCCATGGTC 60.363 44.444 12.58 0.00 0.00 4.02
64 65 7.530435 TCTCTCTTTATCTATCTCCATGGTCA 58.470 38.462 12.58 0.00 0.00 4.02
65 66 7.669304 TCTCTCTTTATCTATCTCCATGGTCAG 59.331 40.741 12.58 2.42 0.00 3.51
66 67 7.301420 TCTCTTTATCTATCTCCATGGTCAGT 58.699 38.462 12.58 0.00 0.00 3.41
67 68 8.448816 TCTCTTTATCTATCTCCATGGTCAGTA 58.551 37.037 12.58 0.54 0.00 2.74
68 69 9.253832 CTCTTTATCTATCTCCATGGTCAGTAT 57.746 37.037 12.58 2.85 0.00 2.12
69 70 9.607333 TCTTTATCTATCTCCATGGTCAGTATT 57.393 33.333 12.58 0.00 0.00 1.89
70 71 9.868277 CTTTATCTATCTCCATGGTCAGTATTC 57.132 37.037 12.58 0.00 0.00 1.75
71 72 6.865834 ATCTATCTCCATGGTCAGTATTCC 57.134 41.667 12.58 0.00 0.00 3.01
72 73 5.715921 TCTATCTCCATGGTCAGTATTCCA 58.284 41.667 12.58 0.00 38.14 3.53
73 74 6.326161 TCTATCTCCATGGTCAGTATTCCAT 58.674 40.000 12.58 0.00 44.15 3.41
74 75 4.963318 TCTCCATGGTCAGTATTCCATC 57.037 45.455 12.58 0.00 41.79 3.51
75 76 4.560739 TCTCCATGGTCAGTATTCCATCT 58.439 43.478 12.58 0.00 41.79 2.90
76 77 4.590647 TCTCCATGGTCAGTATTCCATCTC 59.409 45.833 12.58 0.00 41.79 2.75
77 78 4.560739 TCCATGGTCAGTATTCCATCTCT 58.439 43.478 12.58 0.00 41.79 3.10
78 79 4.590647 TCCATGGTCAGTATTCCATCTCTC 59.409 45.833 12.58 0.00 41.79 3.20
79 80 4.592351 CCATGGTCAGTATTCCATCTCTCT 59.408 45.833 2.57 0.00 41.79 3.10
80 81 5.279406 CCATGGTCAGTATTCCATCTCTCTC 60.279 48.000 2.57 0.00 41.79 3.20
81 82 5.136068 TGGTCAGTATTCCATCTCTCTCT 57.864 43.478 0.00 0.00 0.00 3.10
82 83 5.136828 TGGTCAGTATTCCATCTCTCTCTC 58.863 45.833 0.00 0.00 0.00 3.20
83 84 5.103728 TGGTCAGTATTCCATCTCTCTCTCT 60.104 44.000 0.00 0.00 0.00 3.10
84 85 5.473504 GGTCAGTATTCCATCTCTCTCTCTC 59.526 48.000 0.00 0.00 0.00 3.20
85 86 6.299141 GTCAGTATTCCATCTCTCTCTCTCT 58.701 44.000 0.00 0.00 0.00 3.10
86 87 6.428159 GTCAGTATTCCATCTCTCTCTCTCTC 59.572 46.154 0.00 0.00 0.00 3.20
87 88 6.329986 TCAGTATTCCATCTCTCTCTCTCTCT 59.670 42.308 0.00 0.00 0.00 3.10
88 89 6.652481 CAGTATTCCATCTCTCTCTCTCTCTC 59.348 46.154 0.00 0.00 0.00 3.20
89 90 5.919348 ATTCCATCTCTCTCTCTCTCTCT 57.081 43.478 0.00 0.00 0.00 3.10
90 91 4.963318 TCCATCTCTCTCTCTCTCTCTC 57.037 50.000 0.00 0.00 0.00 3.20
91 92 4.560739 TCCATCTCTCTCTCTCTCTCTCT 58.439 47.826 0.00 0.00 0.00 3.10
92 93 4.590647 TCCATCTCTCTCTCTCTCTCTCTC 59.409 50.000 0.00 0.00 0.00 3.20
93 94 4.592351 CCATCTCTCTCTCTCTCTCTCTCT 59.408 50.000 0.00 0.00 0.00 3.10
94 95 5.279406 CCATCTCTCTCTCTCTCTCTCTCTC 60.279 52.000 0.00 0.00 0.00 3.20
95 96 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
96 97 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
97 98 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
98 99 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
99 100 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
100 101 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
101 102 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
102 103 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
103 104 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
104 105 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
105 106 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
106 107 3.963374 CTCTCTCTCTCTCTCTCTCTCCA 59.037 52.174 0.00 0.00 0.00 3.86
107 108 3.706594 TCTCTCTCTCTCTCTCTCTCCAC 59.293 52.174 0.00 0.00 0.00 4.02
108 109 2.771943 TCTCTCTCTCTCTCTCTCCACC 59.228 54.545 0.00 0.00 0.00 4.61
109 110 2.505407 CTCTCTCTCTCTCTCTCCACCA 59.495 54.545 0.00 0.00 0.00 4.17
110 111 2.505407 TCTCTCTCTCTCTCTCCACCAG 59.495 54.545 0.00 0.00 0.00 4.00
111 112 2.239654 CTCTCTCTCTCTCTCCACCAGT 59.760 54.545 0.00 0.00 0.00 4.00
112 113 2.026356 TCTCTCTCTCTCTCCACCAGTG 60.026 54.545 0.00 0.00 0.00 3.66
113 114 1.707989 TCTCTCTCTCTCCACCAGTGT 59.292 52.381 0.00 0.00 0.00 3.55
114 115 1.818060 CTCTCTCTCTCCACCAGTGTG 59.182 57.143 0.00 0.00 42.39 3.82
115 116 1.145945 TCTCTCTCTCCACCAGTGTGT 59.854 52.381 0.00 0.00 41.09 3.72
116 117 1.271934 CTCTCTCTCCACCAGTGTGTG 59.728 57.143 5.13 5.13 41.09 3.82
117 118 1.043816 CTCTCTCCACCAGTGTGTGT 58.956 55.000 9.85 0.00 41.09 3.72
118 119 0.752658 TCTCTCCACCAGTGTGTGTG 59.247 55.000 9.85 1.95 41.09 3.82
119 120 0.882042 CTCTCCACCAGTGTGTGTGC 60.882 60.000 9.85 0.00 41.09 4.57
120 121 1.146930 CTCCACCAGTGTGTGTGCT 59.853 57.895 9.85 0.00 41.09 4.40
121 122 0.464373 CTCCACCAGTGTGTGTGCTT 60.464 55.000 9.85 0.00 41.09 3.91
122 123 0.747644 TCCACCAGTGTGTGTGCTTG 60.748 55.000 9.85 0.00 41.09 4.01
123 124 0.747644 CCACCAGTGTGTGTGCTTGA 60.748 55.000 9.85 0.00 41.09 3.02
124 125 0.378257 CACCAGTGTGTGTGCTTGAC 59.622 55.000 4.18 0.00 37.72 3.18
125 126 1.089481 ACCAGTGTGTGTGCTTGACG 61.089 55.000 0.00 0.00 0.00 4.35
126 127 1.643292 CAGTGTGTGTGCTTGACGG 59.357 57.895 0.00 0.00 0.00 4.79
127 128 1.089481 CAGTGTGTGTGCTTGACGGT 61.089 55.000 0.00 0.00 0.00 4.83
128 129 0.810031 AGTGTGTGTGCTTGACGGTC 60.810 55.000 0.00 0.00 0.00 4.79
129 130 0.810031 GTGTGTGTGCTTGACGGTCT 60.810 55.000 9.88 0.00 0.00 3.85
130 131 0.747852 TGTGTGTGCTTGACGGTCTA 59.252 50.000 9.88 0.43 0.00 2.59
131 132 1.269569 TGTGTGTGCTTGACGGTCTAG 60.270 52.381 14.08 14.08 0.00 2.43
132 133 1.000607 GTGTGTGCTTGACGGTCTAGA 60.001 52.381 21.08 5.88 0.00 2.43
133 134 1.269723 TGTGTGCTTGACGGTCTAGAG 59.730 52.381 21.08 11.72 0.00 2.43
134 135 1.540267 GTGTGCTTGACGGTCTAGAGA 59.460 52.381 21.08 5.86 0.00 3.10
135 136 2.164624 GTGTGCTTGACGGTCTAGAGAT 59.835 50.000 21.08 0.00 0.00 2.75
136 137 2.826128 TGTGCTTGACGGTCTAGAGATT 59.174 45.455 21.08 0.00 0.00 2.40
137 138 3.258372 TGTGCTTGACGGTCTAGAGATTT 59.742 43.478 21.08 0.00 0.00 2.17
138 139 4.461431 TGTGCTTGACGGTCTAGAGATTTA 59.539 41.667 21.08 0.98 0.00 1.40
139 140 5.047590 TGTGCTTGACGGTCTAGAGATTTAA 60.048 40.000 21.08 0.00 0.00 1.52
140 141 6.043411 GTGCTTGACGGTCTAGAGATTTAAT 58.957 40.000 21.08 0.00 0.00 1.40
141 142 7.147966 TGTGCTTGACGGTCTAGAGATTTAATA 60.148 37.037 21.08 0.00 0.00 0.98
142 143 7.868415 GTGCTTGACGGTCTAGAGATTTAATAT 59.132 37.037 21.08 0.00 0.00 1.28
143 144 9.074576 TGCTTGACGGTCTAGAGATTTAATATA 57.925 33.333 21.08 0.00 0.00 0.86
144 145 9.562583 GCTTGACGGTCTAGAGATTTAATATAG 57.437 37.037 21.08 0.00 0.00 1.31
146 147 8.053026 TGACGGTCTAGAGATTTAATATAGGC 57.947 38.462 9.88 0.00 0.00 3.93
147 148 7.668469 TGACGGTCTAGAGATTTAATATAGGCA 59.332 37.037 9.88 0.00 0.00 4.75
148 149 7.828712 ACGGTCTAGAGATTTAATATAGGCAC 58.171 38.462 0.00 0.00 0.00 5.01
149 150 7.093858 ACGGTCTAGAGATTTAATATAGGCACC 60.094 40.741 0.00 0.00 0.00 5.01
150 151 7.093902 CGGTCTAGAGATTTAATATAGGCACCA 60.094 40.741 0.00 0.00 0.00 4.17
249 250 4.209866 GAGCCCGCCATCCCCATT 62.210 66.667 0.00 0.00 0.00 3.16
258 259 0.540365 CCATCCCCATTAGCGGCAAT 60.540 55.000 1.45 0.00 0.00 3.56
415 1702 5.366829 TGTTTGATCTTGAGCACATTCTG 57.633 39.130 0.00 0.00 0.00 3.02
603 1899 5.878332 AATAAGTGAACGCATTGTCATGA 57.122 34.783 0.00 0.00 31.07 3.07
783 2168 2.979813 GTTTTTACTGCACGGCAATCTG 59.020 45.455 0.35 0.00 38.41 2.90
1436 2986 7.658261 TCCTCACAATAATGGAGAAGTATACG 58.342 38.462 0.00 0.00 0.00 3.06
1515 3065 2.766313 TCAGGAGTTTGATGTTCGTGG 58.234 47.619 0.00 0.00 0.00 4.94
1520 3070 0.951558 GTTTGATGTTCGTGGTGCCT 59.048 50.000 0.00 0.00 0.00 4.75
1801 3351 1.675310 CTTGGGTGGCGATCTTGCA 60.675 57.895 0.00 0.00 36.28 4.08
1971 3522 2.490903 GTTCGTTAGGAGTAGTGCTGGA 59.509 50.000 1.14 0.00 0.00 3.86
2091 3648 1.153549 GCCTGCCTCCTGACTAACG 60.154 63.158 0.00 0.00 0.00 3.18
2258 3827 3.431725 CCTTTTGCCTCGCCGACC 61.432 66.667 0.00 0.00 0.00 4.79
2259 3828 3.788766 CTTTTGCCTCGCCGACCG 61.789 66.667 0.00 0.00 38.61 4.79
2275 3844 3.127533 CGCTTCGCTCCCCCTTTG 61.128 66.667 0.00 0.00 0.00 2.77
2283 3852 1.271163 CGCTCCCCCTTTGTGTTCTTA 60.271 52.381 0.00 0.00 0.00 2.10
2457 4032 0.901827 TCGTGGACATGCCTGTGTAT 59.098 50.000 0.00 0.00 35.14 2.29
2458 4033 2.104170 TCGTGGACATGCCTGTGTATA 58.896 47.619 0.00 0.00 35.14 1.47
2460 4035 3.892588 TCGTGGACATGCCTGTGTATATA 59.107 43.478 0.00 0.00 35.14 0.86
2522 4134 5.890424 ATTTATGTGGACGAAAAATCCGT 57.110 34.783 0.00 0.00 43.56 4.69
2543 4175 4.864806 CGTGCTACTGTGATATCACTTTGT 59.135 41.667 30.67 26.13 46.55 2.83
2556 4188 3.420893 TCACTTTGTGAGCCTATTTGGG 58.579 45.455 0.00 0.00 37.67 4.12
2558 4190 3.441572 CACTTTGTGAGCCTATTTGGGAG 59.558 47.826 0.00 0.00 35.23 4.30
2567 4199 3.010584 AGCCTATTTGGGAGTGTTGTGAT 59.989 43.478 0.00 0.00 36.00 3.06
2573 4205 5.514274 TTTGGGAGTGTTGTGATCTTTTC 57.486 39.130 0.00 0.00 0.00 2.29
2579 4211 6.406961 GGGAGTGTTGTGATCTTTTCCTTTTT 60.407 38.462 0.00 0.00 0.00 1.94
2605 4237 2.746904 TGTGTGGCTTGGATCAAATACG 59.253 45.455 0.00 0.00 0.00 3.06
2614 4246 1.064952 GGATCAAATACGGCCCGTTTG 59.935 52.381 16.82 14.65 41.54 2.93
2632 4264 5.237419 GTTTGAAACGCAGAAAATACAGC 57.763 39.130 0.00 0.00 0.00 4.40
2633 4265 3.552604 TGAAACGCAGAAAATACAGCC 57.447 42.857 0.00 0.00 0.00 4.85
2634 4266 3.146066 TGAAACGCAGAAAATACAGCCT 58.854 40.909 0.00 0.00 0.00 4.58
2635 4267 4.320023 TGAAACGCAGAAAATACAGCCTA 58.680 39.130 0.00 0.00 0.00 3.93
2636 4268 4.153475 TGAAACGCAGAAAATACAGCCTAC 59.847 41.667 0.00 0.00 0.00 3.18
2637 4269 3.328382 ACGCAGAAAATACAGCCTACA 57.672 42.857 0.00 0.00 0.00 2.74
2638 4270 3.670625 ACGCAGAAAATACAGCCTACAA 58.329 40.909 0.00 0.00 0.00 2.41
2639 4271 4.261801 ACGCAGAAAATACAGCCTACAAT 58.738 39.130 0.00 0.00 0.00 2.71
2640 4272 4.332819 ACGCAGAAAATACAGCCTACAATC 59.667 41.667 0.00 0.00 0.00 2.67
2676 4659 7.421530 CTCTAGAGCTCTGACTATTGTCTAC 57.578 44.000 26.78 0.00 43.29 2.59
2682 4665 7.341769 AGAGCTCTGACTATTGTCTACAAATCT 59.658 37.037 17.42 3.17 43.29 2.40
2722 4705 1.893919 GCTCTGTCCTCGGCTCCTTT 61.894 60.000 0.00 0.00 0.00 3.11
2727 4710 1.841556 TCCTCGGCTCCTTTGGTGT 60.842 57.895 0.00 0.00 0.00 4.16
2737 4720 2.444895 TTTGGTGTTGGTGGGGGC 60.445 61.111 0.00 0.00 0.00 5.80
2755 4738 1.899534 CGGTTTTCCTTCGGGGCAA 60.900 57.895 0.00 0.00 37.95 4.52
2772 4755 1.195900 GCAACGGTCGTTTGCTCAATA 59.804 47.619 5.98 0.00 36.00 1.90
2773 4756 2.159572 GCAACGGTCGTTTGCTCAATAT 60.160 45.455 5.98 0.00 36.00 1.28
2774 4757 3.062909 GCAACGGTCGTTTGCTCAATATA 59.937 43.478 5.98 0.00 36.00 0.86
2787 4770 5.869753 GCTCAATATATGGAGCGTCATTT 57.130 39.130 23.29 0.00 46.01 2.32
2788 4771 6.968131 GCTCAATATATGGAGCGTCATTTA 57.032 37.500 23.29 0.00 46.01 1.40
2790 4773 7.459486 GCTCAATATATGGAGCGTCATTTAAG 58.541 38.462 23.29 0.00 46.01 1.85
2805 4788 7.973944 GCGTCATTTAAGAAAATAAAGGGTGAT 59.026 33.333 0.00 0.00 33.45 3.06
2844 4827 1.262950 TGGTGACAAAAGAATCGCACG 59.737 47.619 0.00 0.00 37.44 5.34
2845 4828 1.263217 GGTGACAAAAGAATCGCACGT 59.737 47.619 0.00 0.00 0.00 4.49
2846 4829 2.560896 GTGACAAAAGAATCGCACGTC 58.439 47.619 0.00 0.00 0.00 4.34
2847 4830 1.191425 TGACAAAAGAATCGCACGTCG 59.809 47.619 0.00 0.00 40.15 5.12
2848 4831 0.511221 ACAAAAGAATCGCACGTCGG 59.489 50.000 0.00 0.00 39.05 4.79
2849 4832 0.787787 CAAAAGAATCGCACGTCGGA 59.212 50.000 0.00 0.00 39.05 4.55
2850 4833 1.068474 AAAAGAATCGCACGTCGGAG 58.932 50.000 0.00 0.00 39.05 4.63
2851 4834 1.352156 AAAGAATCGCACGTCGGAGC 61.352 55.000 0.00 0.00 39.05 4.70
2852 4835 2.202623 GAATCGCACGTCGGAGCT 60.203 61.111 9.70 0.00 39.05 4.09
2853 4836 1.805945 GAATCGCACGTCGGAGCTT 60.806 57.895 9.70 0.00 39.05 3.74
2854 4837 2.014093 GAATCGCACGTCGGAGCTTG 62.014 60.000 9.70 0.00 39.05 4.01
2855 4838 3.989698 ATCGCACGTCGGAGCTTGG 62.990 63.158 9.70 0.00 39.05 3.61
2872 4855 3.381136 GCGGCTGGGGCAATTGAA 61.381 61.111 10.34 0.00 40.87 2.69
2873 4856 2.573340 CGGCTGGGGCAATTGAAC 59.427 61.111 10.34 0.37 40.87 3.18
2874 4857 1.978617 CGGCTGGGGCAATTGAACT 60.979 57.895 10.34 0.00 40.87 3.01
2875 4858 1.535204 CGGCTGGGGCAATTGAACTT 61.535 55.000 10.34 0.00 40.87 2.66
2876 4859 0.686789 GGCTGGGGCAATTGAACTTT 59.313 50.000 10.34 0.00 40.87 2.66
2877 4860 1.899142 GGCTGGGGCAATTGAACTTTA 59.101 47.619 10.34 0.00 40.87 1.85
2878 4861 2.353704 GGCTGGGGCAATTGAACTTTAC 60.354 50.000 10.34 0.00 40.87 2.01
2879 4862 2.298729 GCTGGGGCAATTGAACTTTACA 59.701 45.455 10.34 0.00 38.54 2.41
2880 4863 3.244044 GCTGGGGCAATTGAACTTTACAA 60.244 43.478 10.34 0.00 38.54 2.41
2881 4864 4.742138 GCTGGGGCAATTGAACTTTACAAA 60.742 41.667 10.34 0.00 38.54 2.83
2882 4865 4.698575 TGGGGCAATTGAACTTTACAAAC 58.301 39.130 10.34 0.00 0.00 2.93
2883 4866 4.162320 TGGGGCAATTGAACTTTACAAACA 59.838 37.500 10.34 0.00 0.00 2.83
2884 4867 5.163258 TGGGGCAATTGAACTTTACAAACAT 60.163 36.000 10.34 0.00 0.00 2.71
2885 4868 5.762711 GGGGCAATTGAACTTTACAAACATT 59.237 36.000 10.34 0.00 0.00 2.71
2886 4869 6.262049 GGGGCAATTGAACTTTACAAACATTT 59.738 34.615 10.34 0.00 0.00 2.32
2887 4870 7.201776 GGGGCAATTGAACTTTACAAACATTTT 60.202 33.333 10.34 0.00 0.00 1.82
2888 4871 7.643371 GGGCAATTGAACTTTACAAACATTTTG 59.357 33.333 10.34 0.00 0.00 2.44
2889 4872 8.394121 GGCAATTGAACTTTACAAACATTTTGA 58.606 29.630 10.34 0.00 0.00 2.69
2890 4873 9.766277 GCAATTGAACTTTACAAACATTTTGAA 57.234 25.926 10.34 0.00 0.00 2.69
2973 4956 6.473397 TTTTTGAGTTGTGCGAACATTTTT 57.527 29.167 0.00 0.00 0.00 1.94
3004 4987 8.961294 TTTTGACAATTGGAAACATTGTTTTG 57.039 26.923 15.54 11.65 40.05 2.44
3005 4988 7.912056 TTGACAATTGGAAACATTGTTTTGA 57.088 28.000 15.54 6.05 40.05 2.69
3006 4989 8.503458 TTGACAATTGGAAACATTGTTTTGAT 57.497 26.923 15.54 7.85 40.05 2.57
3007 4990 8.503458 TGACAATTGGAAACATTGTTTTGATT 57.497 26.923 15.54 12.42 40.05 2.57
3008 4991 8.396390 TGACAATTGGAAACATTGTTTTGATTG 58.604 29.630 25.10 25.10 40.05 2.67
3009 4992 7.194962 ACAATTGGAAACATTGTTTTGATTGC 58.805 30.769 25.80 13.00 42.32 3.56
3010 4993 6.939132 ATTGGAAACATTGTTTTGATTGCA 57.061 29.167 15.54 2.58 42.32 4.08
3011 4994 6.939132 TTGGAAACATTGTTTTGATTGCAT 57.061 29.167 15.54 0.00 42.32 3.96
3012 4995 6.301687 TGGAAACATTGTTTTGATTGCATG 57.698 33.333 15.54 0.00 33.40 4.06
3013 4996 6.053650 TGGAAACATTGTTTTGATTGCATGA 58.946 32.000 15.54 0.00 33.40 3.07
3014 4997 6.541278 TGGAAACATTGTTTTGATTGCATGAA 59.459 30.769 15.54 0.00 33.40 2.57
3015 4998 6.852345 GGAAACATTGTTTTGATTGCATGAAC 59.148 34.615 15.54 0.00 0.00 3.18
3016 4999 6.922247 AACATTGTTTTGATTGCATGAACA 57.078 29.167 0.00 0.00 32.24 3.18
3017 5000 7.499321 AACATTGTTTTGATTGCATGAACAT 57.501 28.000 0.00 0.00 33.39 2.71
3018 5001 8.604640 AACATTGTTTTGATTGCATGAACATA 57.395 26.923 0.00 0.00 33.39 2.29
3019 5002 8.780846 ACATTGTTTTGATTGCATGAACATAT 57.219 26.923 0.00 0.00 33.39 1.78
3020 5003 9.221933 ACATTGTTTTGATTGCATGAACATATT 57.778 25.926 0.00 0.00 33.39 1.28
3023 5006 8.828688 TGTTTTGATTGCATGAACATATTTCA 57.171 26.923 0.00 3.77 30.40 2.69
3024 5007 8.927721 TGTTTTGATTGCATGAACATATTTCAG 58.072 29.630 0.00 2.23 30.40 3.02
3025 5008 9.142515 GTTTTGATTGCATGAACATATTTCAGA 57.857 29.630 0.00 0.00 0.00 3.27
3026 5009 9.708092 TTTTGATTGCATGAACATATTTCAGAA 57.292 25.926 0.00 0.00 0.00 3.02
3027 5010 9.708092 TTTGATTGCATGAACATATTTCAGAAA 57.292 25.926 0.00 0.00 0.00 2.52
3028 5011 9.708092 TTGATTGCATGAACATATTTCAGAAAA 57.292 25.926 0.00 0.00 0.00 2.29
3029 5012 9.361315 TGATTGCATGAACATATTTCAGAAAAG 57.639 29.630 0.00 0.00 0.00 2.27
3030 5013 9.577110 GATTGCATGAACATATTTCAGAAAAGA 57.423 29.630 0.00 0.00 0.00 2.52
3031 5014 8.746922 TTGCATGAACATATTTCAGAAAAGAC 57.253 30.769 0.00 0.00 0.00 3.01
3032 5015 7.022979 TGCATGAACATATTTCAGAAAAGACG 58.977 34.615 0.00 0.00 0.00 4.18
3033 5016 7.094848 TGCATGAACATATTTCAGAAAAGACGA 60.095 33.333 0.00 0.00 0.00 4.20
3034 5017 7.750458 GCATGAACATATTTCAGAAAAGACGAA 59.250 33.333 0.00 0.00 0.00 3.85
3035 5018 9.055248 CATGAACATATTTCAGAAAAGACGAAC 57.945 33.333 0.00 0.00 0.00 3.95
3036 5019 7.581476 TGAACATATTTCAGAAAAGACGAACC 58.419 34.615 0.00 0.00 0.00 3.62
3037 5020 7.444183 TGAACATATTTCAGAAAAGACGAACCT 59.556 33.333 0.00 0.00 0.00 3.50
3038 5021 7.745620 ACATATTTCAGAAAAGACGAACCTT 57.254 32.000 0.00 0.00 0.00 3.50
3039 5022 8.166422 ACATATTTCAGAAAAGACGAACCTTT 57.834 30.769 0.00 0.00 37.94 3.11
3040 5023 8.630037 ACATATTTCAGAAAAGACGAACCTTTT 58.370 29.630 0.00 12.18 45.81 2.27
3041 5024 9.463443 CATATTTCAGAAAAGACGAACCTTTTT 57.537 29.630 0.00 2.99 43.90 1.94
3060 5043 4.849111 TTTTTGAAAGCGCGAACATTTT 57.151 31.818 12.10 1.10 0.00 1.82
3061 5044 4.849111 TTTTGAAAGCGCGAACATTTTT 57.151 31.818 12.10 0.00 0.00 1.94
3062 5045 4.430407 TTTGAAAGCGCGAACATTTTTC 57.570 36.364 12.10 9.64 0.00 2.29
3063 5046 3.071786 TGAAAGCGCGAACATTTTTCA 57.928 38.095 12.10 12.89 35.93 2.69
3064 5047 2.786578 TGAAAGCGCGAACATTTTTCAC 59.213 40.909 12.10 0.00 34.04 3.18
3065 5048 2.483583 AAGCGCGAACATTTTTCACA 57.516 40.000 12.10 0.00 0.00 3.58
3066 5049 2.483583 AGCGCGAACATTTTTCACAA 57.516 40.000 12.10 0.00 0.00 3.33
3067 5050 2.803451 AGCGCGAACATTTTTCACAAA 58.197 38.095 12.10 0.00 0.00 2.83
3068 5051 2.788786 AGCGCGAACATTTTTCACAAAG 59.211 40.909 12.10 0.00 0.00 2.77
3069 5052 2.786578 GCGCGAACATTTTTCACAAAGA 59.213 40.909 12.10 0.00 0.00 2.52
3070 5053 3.425193 GCGCGAACATTTTTCACAAAGAT 59.575 39.130 12.10 0.00 0.00 2.40
3071 5054 4.661402 GCGCGAACATTTTTCACAAAGATG 60.661 41.667 12.10 0.00 0.00 2.90
3072 5055 4.674662 CGCGAACATTTTTCACAAAGATGA 59.325 37.500 0.00 0.00 0.00 2.92
3073 5056 5.172951 CGCGAACATTTTTCACAAAGATGAA 59.827 36.000 0.00 0.00 36.80 2.57
3074 5057 6.347110 GCGAACATTTTTCACAAAGATGAAC 58.653 36.000 6.53 1.02 38.31 3.18
3075 5058 6.019961 GCGAACATTTTTCACAAAGATGAACA 60.020 34.615 6.53 0.00 38.31 3.18
3076 5059 7.306749 GCGAACATTTTTCACAAAGATGAACAT 60.307 33.333 6.53 0.00 38.31 2.71
3077 5060 8.542132 CGAACATTTTTCACAAAGATGAACATT 58.458 29.630 6.53 0.00 38.31 2.71
3078 5061 9.640974 GAACATTTTTCACAAAGATGAACATTG 57.359 29.630 6.53 0.00 38.31 2.82
3079 5062 8.721019 ACATTTTTCACAAAGATGAACATTGT 57.279 26.923 6.53 0.00 40.35 2.71
3080 5063 9.165035 ACATTTTTCACAAAGATGAACATTGTT 57.835 25.926 0.63 0.63 38.16 2.83
3081 5064 9.991388 CATTTTTCACAAAGATGAACATTGTTT 57.009 25.926 3.08 0.00 38.16 2.83
3082 5065 9.991388 ATTTTTCACAAAGATGAACATTGTTTG 57.009 25.926 3.08 15.53 38.16 2.93
3083 5066 7.536895 TTTCACAAAGATGAACATTGTTTGG 57.463 32.000 18.62 12.16 38.16 3.28
3084 5067 6.462552 TCACAAAGATGAACATTGTTTGGA 57.537 33.333 18.62 13.39 38.16 3.53
3085 5068 6.871844 TCACAAAGATGAACATTGTTTGGAA 58.128 32.000 18.62 9.76 38.16 3.53
3086 5069 6.979817 TCACAAAGATGAACATTGTTTGGAAG 59.020 34.615 18.62 12.36 38.16 3.46
3087 5070 5.754890 ACAAAGATGAACATTGTTTGGAAGC 59.245 36.000 18.62 0.00 37.15 3.86
3088 5071 4.164822 AGATGAACATTGTTTGGAAGCG 57.835 40.909 3.08 0.00 0.00 4.68
3089 5072 3.569701 AGATGAACATTGTTTGGAAGCGT 59.430 39.130 3.08 0.00 0.00 5.07
3090 5073 3.077229 TGAACATTGTTTGGAAGCGTG 57.923 42.857 3.08 0.00 0.00 5.34
3091 5074 2.685388 TGAACATTGTTTGGAAGCGTGA 59.315 40.909 3.08 0.00 0.00 4.35
3092 5075 3.129462 TGAACATTGTTTGGAAGCGTGAA 59.871 39.130 3.08 0.00 0.00 3.18
3093 5076 3.078594 ACATTGTTTGGAAGCGTGAAC 57.921 42.857 0.00 0.00 0.00 3.18
3094 5077 2.425312 ACATTGTTTGGAAGCGTGAACA 59.575 40.909 0.00 0.00 0.00 3.18
3095 5078 3.068024 ACATTGTTTGGAAGCGTGAACAT 59.932 39.130 0.00 0.00 32.64 2.71
3096 5079 3.791973 TTGTTTGGAAGCGTGAACATT 57.208 38.095 0.00 0.00 32.64 2.71
3097 5080 3.791973 TGTTTGGAAGCGTGAACATTT 57.208 38.095 0.00 0.00 0.00 2.32
3098 5081 4.116747 TGTTTGGAAGCGTGAACATTTT 57.883 36.364 0.00 0.00 0.00 1.82
3099 5082 4.499183 TGTTTGGAAGCGTGAACATTTTT 58.501 34.783 0.00 0.00 0.00 1.94
3100 5083 4.564769 TGTTTGGAAGCGTGAACATTTTTC 59.435 37.500 0.00 0.00 0.00 2.29
3101 5084 4.377839 TTGGAAGCGTGAACATTTTTCA 57.622 36.364 0.00 0.00 0.00 2.69
3102 5085 4.377839 TGGAAGCGTGAACATTTTTCAA 57.622 36.364 0.00 0.00 0.00 2.69
3103 5086 4.748892 TGGAAGCGTGAACATTTTTCAAA 58.251 34.783 0.00 0.00 0.00 2.69
3104 5087 5.171476 TGGAAGCGTGAACATTTTTCAAAA 58.829 33.333 0.00 0.00 0.00 2.44
3105 5088 5.639506 TGGAAGCGTGAACATTTTTCAAAAA 59.360 32.000 0.00 0.00 0.00 1.94
3106 5089 6.314896 TGGAAGCGTGAACATTTTTCAAAAAT 59.685 30.769 1.98 1.98 0.00 1.82
3107 5090 7.492669 TGGAAGCGTGAACATTTTTCAAAAATA 59.507 29.630 7.80 0.00 0.00 1.40
3108 5091 7.792048 GGAAGCGTGAACATTTTTCAAAAATAC 59.208 33.333 7.80 2.49 0.00 1.89
3109 5092 6.862194 AGCGTGAACATTTTTCAAAAATACG 58.138 32.000 18.22 18.22 0.00 3.06
3110 5093 6.693545 AGCGTGAACATTTTTCAAAAATACGA 59.306 30.769 23.47 3.38 0.00 3.43
3111 5094 7.381139 AGCGTGAACATTTTTCAAAAATACGAT 59.619 29.630 23.47 17.92 0.00 3.73
3112 5095 7.678428 GCGTGAACATTTTTCAAAAATACGATC 59.322 33.333 23.47 11.96 0.00 3.69
3113 5096 8.686418 CGTGAACATTTTTCAAAAATACGATCA 58.314 29.630 17.88 10.57 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.528321 AGAGAGAGAGAGAGATGTGATACTG 58.472 44.000 0.00 0.00 0.00 2.74
2 3 6.556495 AGAGAGAGAGAGAGAGATGTGATACT 59.444 42.308 0.00 0.00 0.00 2.12
3 4 6.763355 AGAGAGAGAGAGAGAGATGTGATAC 58.237 44.000 0.00 0.00 0.00 2.24
4 5 6.294731 CGAGAGAGAGAGAGAGAGATGTGATA 60.295 46.154 0.00 0.00 0.00 2.15
5 6 5.510349 CGAGAGAGAGAGAGAGAGATGTGAT 60.510 48.000 0.00 0.00 0.00 3.06
6 7 4.202151 CGAGAGAGAGAGAGAGAGATGTGA 60.202 50.000 0.00 0.00 0.00 3.58
7 8 4.053983 CGAGAGAGAGAGAGAGAGATGTG 58.946 52.174 0.00 0.00 0.00 3.21
8 9 3.493350 GCGAGAGAGAGAGAGAGAGATGT 60.493 52.174 0.00 0.00 0.00 3.06
9 10 3.062763 GCGAGAGAGAGAGAGAGAGATG 58.937 54.545 0.00 0.00 0.00 2.90
10 11 2.968574 AGCGAGAGAGAGAGAGAGAGAT 59.031 50.000 0.00 0.00 0.00 2.75
11 12 2.362397 GAGCGAGAGAGAGAGAGAGAGA 59.638 54.545 0.00 0.00 0.00 3.10
12 13 2.748605 GAGCGAGAGAGAGAGAGAGAG 58.251 57.143 0.00 0.00 0.00 3.20
13 14 1.067060 CGAGCGAGAGAGAGAGAGAGA 59.933 57.143 0.00 0.00 0.00 3.10
14 15 1.491670 CGAGCGAGAGAGAGAGAGAG 58.508 60.000 0.00 0.00 0.00 3.20
15 16 0.529773 GCGAGCGAGAGAGAGAGAGA 60.530 60.000 0.00 0.00 0.00 3.10
16 17 0.530650 AGCGAGCGAGAGAGAGAGAG 60.531 60.000 0.00 0.00 0.00 3.20
17 18 0.529773 GAGCGAGCGAGAGAGAGAGA 60.530 60.000 0.00 0.00 0.00 3.10
18 19 1.821241 CGAGCGAGCGAGAGAGAGAG 61.821 65.000 0.00 0.00 0.00 3.20
19 20 1.880796 CGAGCGAGCGAGAGAGAGA 60.881 63.158 0.00 0.00 0.00 3.10
20 21 2.625906 CGAGCGAGCGAGAGAGAG 59.374 66.667 0.00 0.00 0.00 3.20
21 22 3.568743 GCGAGCGAGCGAGAGAGA 61.569 66.667 1.41 0.00 0.00 3.10
22 23 3.506312 GAGCGAGCGAGCGAGAGAG 62.506 68.421 1.41 0.00 43.00 3.20
23 24 3.568743 GAGCGAGCGAGCGAGAGA 61.569 66.667 1.41 0.00 43.00 3.10
24 25 3.506312 GAGAGCGAGCGAGCGAGAG 62.506 68.421 1.41 0.00 43.00 3.20
25 26 3.568743 GAGAGCGAGCGAGCGAGA 61.569 66.667 1.41 0.00 43.00 4.04
26 27 3.506312 GAGAGAGCGAGCGAGCGAG 62.506 68.421 1.41 0.00 43.00 5.03
27 28 3.568743 GAGAGAGCGAGCGAGCGA 61.569 66.667 1.41 0.00 43.00 4.93
28 29 2.591129 AAAGAGAGAGCGAGCGAGCG 62.591 60.000 0.00 0.00 43.00 5.03
29 30 0.378962 TAAAGAGAGAGCGAGCGAGC 59.621 55.000 0.00 0.00 37.41 5.03
30 31 2.548057 AGATAAAGAGAGAGCGAGCGAG 59.452 50.000 0.00 0.00 0.00 5.03
31 32 2.566913 AGATAAAGAGAGAGCGAGCGA 58.433 47.619 0.00 0.00 0.00 4.93
32 33 4.391830 AGATAGATAAAGAGAGAGCGAGCG 59.608 45.833 0.00 0.00 0.00 5.03
33 34 5.163754 GGAGATAGATAAAGAGAGAGCGAGC 60.164 48.000 0.00 0.00 0.00 5.03
34 35 5.937540 TGGAGATAGATAAAGAGAGAGCGAG 59.062 44.000 0.00 0.00 0.00 5.03
35 36 5.870706 TGGAGATAGATAAAGAGAGAGCGA 58.129 41.667 0.00 0.00 0.00 4.93
36 37 6.404623 CCATGGAGATAGATAAAGAGAGAGCG 60.405 46.154 5.56 0.00 0.00 5.03
37 38 6.437162 ACCATGGAGATAGATAAAGAGAGAGC 59.563 42.308 21.47 0.00 0.00 4.09
38 39 7.669304 TGACCATGGAGATAGATAAAGAGAGAG 59.331 40.741 21.47 0.00 0.00 3.20
39 40 7.530435 TGACCATGGAGATAGATAAAGAGAGA 58.470 38.462 21.47 0.00 0.00 3.10
40 41 7.451255 ACTGACCATGGAGATAGATAAAGAGAG 59.549 40.741 21.47 0.00 0.00 3.20
41 42 7.301420 ACTGACCATGGAGATAGATAAAGAGA 58.699 38.462 21.47 0.00 0.00 3.10
42 43 7.537596 ACTGACCATGGAGATAGATAAAGAG 57.462 40.000 21.47 0.00 0.00 2.85
43 44 9.607333 AATACTGACCATGGAGATAGATAAAGA 57.393 33.333 21.47 0.00 0.00 2.52
44 45 9.868277 GAATACTGACCATGGAGATAGATAAAG 57.132 37.037 21.47 2.97 0.00 1.85
45 46 8.816894 GGAATACTGACCATGGAGATAGATAAA 58.183 37.037 21.47 1.06 0.00 1.40
46 47 7.955750 TGGAATACTGACCATGGAGATAGATAA 59.044 37.037 21.47 3.22 0.00 1.75
47 48 7.478721 TGGAATACTGACCATGGAGATAGATA 58.521 38.462 21.47 1.60 0.00 1.98
48 49 6.326161 TGGAATACTGACCATGGAGATAGAT 58.674 40.000 21.47 1.25 0.00 1.98
49 50 5.715921 TGGAATACTGACCATGGAGATAGA 58.284 41.667 21.47 0.00 0.00 1.98
50 51 6.440010 AGATGGAATACTGACCATGGAGATAG 59.560 42.308 21.47 12.63 45.41 2.08
51 52 6.326161 AGATGGAATACTGACCATGGAGATA 58.674 40.000 21.47 5.50 45.41 1.98
52 53 5.161135 AGATGGAATACTGACCATGGAGAT 58.839 41.667 21.47 0.00 45.41 2.75
53 54 4.560739 AGATGGAATACTGACCATGGAGA 58.439 43.478 21.47 2.67 45.41 3.71
54 55 4.592351 AGAGATGGAATACTGACCATGGAG 59.408 45.833 21.47 9.06 45.41 3.86
55 56 4.560739 AGAGATGGAATACTGACCATGGA 58.439 43.478 21.47 0.00 45.41 3.41
56 57 4.592351 AGAGAGATGGAATACTGACCATGG 59.408 45.833 11.19 11.19 45.41 3.66
57 58 5.539574 AGAGAGAGATGGAATACTGACCATG 59.460 44.000 0.00 0.00 45.41 3.66
59 60 5.103728 AGAGAGAGAGATGGAATACTGACCA 60.104 44.000 0.00 0.00 40.57 4.02
60 61 5.385198 AGAGAGAGAGATGGAATACTGACC 58.615 45.833 0.00 0.00 0.00 4.02
61 62 6.299141 AGAGAGAGAGAGATGGAATACTGAC 58.701 44.000 0.00 0.00 0.00 3.51
62 63 6.329986 AGAGAGAGAGAGAGATGGAATACTGA 59.670 42.308 0.00 0.00 0.00 3.41
63 64 6.537355 AGAGAGAGAGAGAGATGGAATACTG 58.463 44.000 0.00 0.00 0.00 2.74
64 65 6.560304 AGAGAGAGAGAGAGAGATGGAATACT 59.440 42.308 0.00 0.00 0.00 2.12
65 66 6.773638 AGAGAGAGAGAGAGAGATGGAATAC 58.226 44.000 0.00 0.00 0.00 1.89
66 67 6.789457 AGAGAGAGAGAGAGAGAGATGGAATA 59.211 42.308 0.00 0.00 0.00 1.75
67 68 5.610132 AGAGAGAGAGAGAGAGAGATGGAAT 59.390 44.000 0.00 0.00 0.00 3.01
68 69 4.971282 AGAGAGAGAGAGAGAGAGATGGAA 59.029 45.833 0.00 0.00 0.00 3.53
69 70 4.560739 AGAGAGAGAGAGAGAGAGATGGA 58.439 47.826 0.00 0.00 0.00 3.41
70 71 4.592351 AGAGAGAGAGAGAGAGAGAGATGG 59.408 50.000 0.00 0.00 0.00 3.51
71 72 5.539574 AGAGAGAGAGAGAGAGAGAGAGATG 59.460 48.000 0.00 0.00 0.00 2.90
72 73 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
73 74 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
74 75 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
75 76 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
76 77 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
77 78 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
78 79 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
79 80 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
80 81 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
81 82 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
82 83 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
83 84 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
84 85 3.963374 TGGAGAGAGAGAGAGAGAGAGAG 59.037 52.174 0.00 0.00 0.00 3.20
85 86 3.706594 GTGGAGAGAGAGAGAGAGAGAGA 59.293 52.174 0.00 0.00 0.00 3.10
86 87 3.181461 GGTGGAGAGAGAGAGAGAGAGAG 60.181 56.522 0.00 0.00 0.00 3.20
87 88 2.771943 GGTGGAGAGAGAGAGAGAGAGA 59.228 54.545 0.00 0.00 0.00 3.10
88 89 2.505407 TGGTGGAGAGAGAGAGAGAGAG 59.495 54.545 0.00 0.00 0.00 3.20
89 90 2.505407 CTGGTGGAGAGAGAGAGAGAGA 59.495 54.545 0.00 0.00 0.00 3.10
90 91 2.239654 ACTGGTGGAGAGAGAGAGAGAG 59.760 54.545 0.00 0.00 0.00 3.20
91 92 2.026356 CACTGGTGGAGAGAGAGAGAGA 60.026 54.545 0.00 0.00 0.00 3.10
92 93 2.290896 ACACTGGTGGAGAGAGAGAGAG 60.291 54.545 5.70 0.00 34.19 3.20
93 94 1.707989 ACACTGGTGGAGAGAGAGAGA 59.292 52.381 5.70 0.00 34.19 3.10
94 95 1.818060 CACACTGGTGGAGAGAGAGAG 59.182 57.143 5.70 0.00 41.45 3.20
95 96 1.916506 CACACTGGTGGAGAGAGAGA 58.083 55.000 5.70 0.00 41.45 3.10
106 107 1.089481 CGTCAAGCACACACACTGGT 61.089 55.000 0.00 0.00 0.00 4.00
107 108 1.643292 CGTCAAGCACACACACTGG 59.357 57.895 0.00 0.00 0.00 4.00
108 109 1.089481 ACCGTCAAGCACACACACTG 61.089 55.000 0.00 0.00 0.00 3.66
109 110 0.810031 GACCGTCAAGCACACACACT 60.810 55.000 0.00 0.00 0.00 3.55
110 111 0.810031 AGACCGTCAAGCACACACAC 60.810 55.000 0.40 0.00 0.00 3.82
111 112 0.747852 TAGACCGTCAAGCACACACA 59.252 50.000 0.40 0.00 0.00 3.72
112 113 1.000607 TCTAGACCGTCAAGCACACAC 60.001 52.381 0.40 0.00 0.00 3.82
113 114 1.269723 CTCTAGACCGTCAAGCACACA 59.730 52.381 0.40 0.00 0.00 3.72
114 115 1.540267 TCTCTAGACCGTCAAGCACAC 59.460 52.381 0.40 0.00 0.00 3.82
115 116 1.905637 TCTCTAGACCGTCAAGCACA 58.094 50.000 0.40 0.00 0.00 4.57
116 117 3.512033 AATCTCTAGACCGTCAAGCAC 57.488 47.619 0.40 0.00 0.00 4.40
117 118 5.654603 TTAAATCTCTAGACCGTCAAGCA 57.345 39.130 0.40 0.00 0.00 3.91
118 119 9.562583 CTATATTAAATCTCTAGACCGTCAAGC 57.437 37.037 0.40 0.00 0.00 4.01
120 121 8.521176 GCCTATATTAAATCTCTAGACCGTCAA 58.479 37.037 0.40 0.00 0.00 3.18
121 122 7.668469 TGCCTATATTAAATCTCTAGACCGTCA 59.332 37.037 0.40 0.00 0.00 4.35
122 123 7.969508 GTGCCTATATTAAATCTCTAGACCGTC 59.030 40.741 0.00 0.00 0.00 4.79
123 124 7.093858 GGTGCCTATATTAAATCTCTAGACCGT 60.094 40.741 0.00 0.00 0.00 4.83
124 125 7.093902 TGGTGCCTATATTAAATCTCTAGACCG 60.094 40.741 0.00 0.00 0.00 4.79
125 126 8.135382 TGGTGCCTATATTAAATCTCTAGACC 57.865 38.462 0.00 0.00 0.00 3.85
126 127 8.808092 ACTGGTGCCTATATTAAATCTCTAGAC 58.192 37.037 0.00 0.00 0.00 2.59
127 128 8.807118 CACTGGTGCCTATATTAAATCTCTAGA 58.193 37.037 0.00 0.00 0.00 2.43
128 129 8.589338 ACACTGGTGCCTATATTAAATCTCTAG 58.411 37.037 0.17 0.00 0.00 2.43
129 130 8.492415 ACACTGGTGCCTATATTAAATCTCTA 57.508 34.615 0.17 0.00 0.00 2.43
130 131 7.380423 ACACTGGTGCCTATATTAAATCTCT 57.620 36.000 0.17 0.00 0.00 3.10
131 132 7.095607 CGAACACTGGTGCCTATATTAAATCTC 60.096 40.741 0.17 0.00 0.00 2.75
132 133 6.706270 CGAACACTGGTGCCTATATTAAATCT 59.294 38.462 0.17 0.00 0.00 2.40
133 134 6.704493 TCGAACACTGGTGCCTATATTAAATC 59.296 38.462 0.17 0.00 0.00 2.17
134 135 6.588204 TCGAACACTGGTGCCTATATTAAAT 58.412 36.000 0.17 0.00 0.00 1.40
135 136 5.979993 TCGAACACTGGTGCCTATATTAAA 58.020 37.500 0.17 0.00 0.00 1.52
136 137 5.452776 CCTCGAACACTGGTGCCTATATTAA 60.453 44.000 0.17 0.00 0.00 1.40
137 138 4.038763 CCTCGAACACTGGTGCCTATATTA 59.961 45.833 0.17 0.00 0.00 0.98
138 139 3.181465 CCTCGAACACTGGTGCCTATATT 60.181 47.826 0.17 0.00 0.00 1.28
139 140 2.365617 CCTCGAACACTGGTGCCTATAT 59.634 50.000 0.17 0.00 0.00 0.86
140 141 1.754803 CCTCGAACACTGGTGCCTATA 59.245 52.381 0.17 0.00 0.00 1.31
141 142 0.537188 CCTCGAACACTGGTGCCTAT 59.463 55.000 0.17 0.00 0.00 2.57
142 143 1.972198 CCTCGAACACTGGTGCCTA 59.028 57.895 0.17 0.00 0.00 3.93
143 144 2.743718 CCTCGAACACTGGTGCCT 59.256 61.111 0.17 0.00 0.00 4.75
144 145 3.050275 GCCTCGAACACTGGTGCC 61.050 66.667 0.17 0.00 0.00 5.01
145 146 3.050275 GGCCTCGAACACTGGTGC 61.050 66.667 0.00 0.00 0.00 5.01
146 147 2.738521 CGGCCTCGAACACTGGTG 60.739 66.667 0.00 0.00 39.00 4.17
147 148 3.222354 GACGGCCTCGAACACTGGT 62.222 63.158 0.00 0.00 40.11 4.00
148 149 2.432628 GACGGCCTCGAACACTGG 60.433 66.667 0.00 0.00 40.11 4.00
149 150 1.300620 TTGACGGCCTCGAACACTG 60.301 57.895 0.00 0.00 40.11 3.66
150 151 1.300697 GTTGACGGCCTCGAACACT 60.301 57.895 0.00 0.00 40.11 3.55
201 202 2.282180 ATGACGTTGGTGGTGCCC 60.282 61.111 0.00 0.00 36.04 5.36
217 218 0.103208 GGCTCGACGACCTCAATGAT 59.897 55.000 0.00 0.00 0.00 2.45
258 259 3.589654 CTTGGAGAAGACGCCGGCA 62.590 63.158 28.98 0.00 38.83 5.69
415 1702 4.359706 AGTTGAAACTTGAAAACATCGGC 58.640 39.130 0.00 0.00 35.21 5.54
754 2139 3.426963 CCGTGCAGTAAAAACAACAGTGT 60.427 43.478 0.00 0.00 40.75 3.55
774 2159 3.871006 TGAAATAGTAGTGCAGATTGCCG 59.129 43.478 0.00 0.00 44.23 5.69
783 2168 7.265673 TGTGATAACCTCTGAAATAGTAGTGC 58.734 38.462 0.00 0.00 0.00 4.40
1159 2546 0.674895 AACTGCCTTCTGATGGACGC 60.675 55.000 13.34 0.00 0.00 5.19
1515 3065 1.620323 AGAATCCAAAAGGCAAGGCAC 59.380 47.619 0.00 0.00 0.00 5.01
1520 3070 2.295909 CGTTCCAGAATCCAAAAGGCAA 59.704 45.455 0.00 0.00 0.00 4.52
1801 3351 1.172812 GGTCCGCAAAGGCAGAAACT 61.173 55.000 0.00 0.00 41.24 2.66
2091 3648 7.958674 TGAAACAAATGCAGTAAAACAAGTTC 58.041 30.769 0.00 0.00 0.00 3.01
2260 3829 0.537371 AACACAAAGGGGGAGCGAAG 60.537 55.000 0.00 0.00 0.00 3.79
2261 3830 0.536460 GAACACAAAGGGGGAGCGAA 60.536 55.000 0.00 0.00 0.00 4.70
2262 3831 1.072505 GAACACAAAGGGGGAGCGA 59.927 57.895 0.00 0.00 0.00 4.93
2263 3832 0.537371 AAGAACACAAAGGGGGAGCG 60.537 55.000 0.00 0.00 0.00 5.03
2264 3833 2.579410 TAAGAACACAAAGGGGGAGC 57.421 50.000 0.00 0.00 0.00 4.70
2265 3834 4.576330 AGATAAGAACACAAAGGGGGAG 57.424 45.455 0.00 0.00 0.00 4.30
2266 3835 5.074515 AGAAAGATAAGAACACAAAGGGGGA 59.925 40.000 0.00 0.00 0.00 4.81
2267 3836 5.325239 AGAAAGATAAGAACACAAAGGGGG 58.675 41.667 0.00 0.00 0.00 5.40
2272 3841 6.210796 TCGTCGAGAAAGATAAGAACACAAA 58.789 36.000 0.00 0.00 0.00 2.83
2275 3844 5.392286 ACTCGTCGAGAAAGATAAGAACAC 58.608 41.667 28.33 0.00 33.32 3.32
2283 3852 3.440872 AGCAAGTACTCGTCGAGAAAGAT 59.559 43.478 28.33 8.35 33.32 2.40
2348 3918 3.322254 CACGTAAGATATTCCAGGCTCCT 59.678 47.826 0.00 0.00 43.62 3.69
2457 4032 6.448852 TCGCAGCATCGGTATTTAAGTTATA 58.551 36.000 0.00 0.00 0.00 0.98
2458 4033 5.294356 TCGCAGCATCGGTATTTAAGTTAT 58.706 37.500 0.00 0.00 0.00 1.89
2460 4035 3.527533 TCGCAGCATCGGTATTTAAGTT 58.472 40.909 0.00 0.00 0.00 2.66
2543 4175 2.375174 ACAACACTCCCAAATAGGCTCA 59.625 45.455 0.00 0.00 35.39 4.26
2579 4211 1.317613 GATCCAAGCCACACACACAA 58.682 50.000 0.00 0.00 0.00 3.33
2614 4246 3.831715 AGGCTGTATTTTCTGCGTTTC 57.168 42.857 0.00 0.00 34.02 2.78
2631 4263 3.316868 AGCTCTAAGAGACGATTGTAGGC 59.683 47.826 0.00 0.00 0.00 3.93
2632 4264 4.819630 AGAGCTCTAAGAGACGATTGTAGG 59.180 45.833 16.50 0.00 0.00 3.18
2633 4265 6.926826 TCTAGAGCTCTAAGAGACGATTGTAG 59.073 42.308 23.37 9.18 0.00 2.74
2634 4266 6.818233 TCTAGAGCTCTAAGAGACGATTGTA 58.182 40.000 23.37 0.00 0.00 2.41
2635 4267 5.676552 TCTAGAGCTCTAAGAGACGATTGT 58.323 41.667 23.37 0.00 0.00 2.71
2636 4268 6.228273 CTCTAGAGCTCTAAGAGACGATTG 57.772 45.833 28.39 14.87 31.40 2.67
2676 4659 4.025396 AGAGCGACGAATTATGCAGATTTG 60.025 41.667 0.00 9.99 0.00 2.32
2682 4665 3.853676 GCTCTAGAGCGACGAATTATGCA 60.854 47.826 28.04 0.00 45.29 3.96
2713 4696 1.528309 ACCAACACCAAAGGAGCCG 60.528 57.895 0.00 0.00 0.00 5.52
2727 4710 2.522193 GAAAACCGCCCCCACCAA 60.522 61.111 0.00 0.00 0.00 3.67
2755 4738 3.807622 CCATATATTGAGCAAACGACCGT 59.192 43.478 0.00 0.00 0.00 4.83
2774 4757 8.190784 CCTTTATTTTCTTAAATGACGCTCCAT 58.809 33.333 0.00 0.00 35.61 3.41
2786 4769 9.594936 TTTCTCCATCACCCTTTATTTTCTTAA 57.405 29.630 0.00 0.00 0.00 1.85
2787 4770 9.594936 TTTTCTCCATCACCCTTTATTTTCTTA 57.405 29.630 0.00 0.00 0.00 2.10
2788 4771 8.491045 TTTTCTCCATCACCCTTTATTTTCTT 57.509 30.769 0.00 0.00 0.00 2.52
2790 4773 7.323420 CCTTTTCTCCATCACCCTTTATTTTC 58.677 38.462 0.00 0.00 0.00 2.29
2794 4777 4.326132 CCCCTTTTCTCCATCACCCTTTAT 60.326 45.833 0.00 0.00 0.00 1.40
2820 4803 3.567585 TGCGATTCTTTTGTCACCAATGA 59.432 39.130 0.00 0.00 0.00 2.57
2821 4804 3.670055 GTGCGATTCTTTTGTCACCAATG 59.330 43.478 0.00 0.00 0.00 2.82
2822 4805 3.609175 CGTGCGATTCTTTTGTCACCAAT 60.609 43.478 0.00 0.00 0.00 3.16
2823 4806 2.286713 CGTGCGATTCTTTTGTCACCAA 60.287 45.455 0.00 0.00 0.00 3.67
2824 4807 1.262950 CGTGCGATTCTTTTGTCACCA 59.737 47.619 0.00 0.00 0.00 4.17
2825 4808 1.263217 ACGTGCGATTCTTTTGTCACC 59.737 47.619 0.00 0.00 0.00 4.02
2826 4809 2.560896 GACGTGCGATTCTTTTGTCAC 58.439 47.619 0.00 0.00 0.00 3.67
2827 4810 1.191425 CGACGTGCGATTCTTTTGTCA 59.809 47.619 0.00 0.00 44.57 3.58
2828 4811 1.461888 CCGACGTGCGATTCTTTTGTC 60.462 52.381 0.00 0.00 44.57 3.18
2829 4812 0.511221 CCGACGTGCGATTCTTTTGT 59.489 50.000 0.00 0.00 44.57 2.83
2830 4813 0.787787 TCCGACGTGCGATTCTTTTG 59.212 50.000 0.00 0.00 44.57 2.44
2831 4814 1.068474 CTCCGACGTGCGATTCTTTT 58.932 50.000 0.00 0.00 44.57 2.27
2832 4815 1.352156 GCTCCGACGTGCGATTCTTT 61.352 55.000 0.00 0.00 44.57 2.52
2833 4816 1.805945 GCTCCGACGTGCGATTCTT 60.806 57.895 0.00 0.00 44.57 2.52
2834 4817 2.202623 GCTCCGACGTGCGATTCT 60.203 61.111 0.00 0.00 44.57 2.40
2835 4818 1.805945 AAGCTCCGACGTGCGATTC 60.806 57.895 0.00 0.00 44.57 2.52
2836 4819 2.094659 CAAGCTCCGACGTGCGATT 61.095 57.895 0.00 0.00 44.57 3.34
2837 4820 2.507102 CAAGCTCCGACGTGCGAT 60.507 61.111 0.00 0.00 44.57 4.58
2838 4821 4.717629 CCAAGCTCCGACGTGCGA 62.718 66.667 0.00 0.00 44.57 5.10
2855 4838 3.381136 TTCAATTGCCCCAGCCGC 61.381 61.111 0.00 0.00 38.69 6.53
2856 4839 1.535204 AAGTTCAATTGCCCCAGCCG 61.535 55.000 0.00 0.00 38.69 5.52
2857 4840 0.686789 AAAGTTCAATTGCCCCAGCC 59.313 50.000 0.00 0.00 38.69 4.85
2858 4841 2.298729 TGTAAAGTTCAATTGCCCCAGC 59.701 45.455 0.00 0.00 40.48 4.85
2859 4842 4.599047 TTGTAAAGTTCAATTGCCCCAG 57.401 40.909 0.00 0.00 0.00 4.45
2860 4843 4.162320 TGTTTGTAAAGTTCAATTGCCCCA 59.838 37.500 0.00 0.00 0.00 4.96
2861 4844 4.698575 TGTTTGTAAAGTTCAATTGCCCC 58.301 39.130 0.00 0.00 0.00 5.80
2862 4845 6.859420 AATGTTTGTAAAGTTCAATTGCCC 57.141 33.333 0.00 0.00 0.00 5.36
2863 4846 8.394121 TCAAAATGTTTGTAAAGTTCAATTGCC 58.606 29.630 0.00 0.00 0.00 4.52
2864 4847 9.766277 TTCAAAATGTTTGTAAAGTTCAATTGC 57.234 25.926 0.00 0.00 0.00 3.56
2950 4933 6.473397 AAAAATGTTCGCACAACTCAAAAA 57.527 29.167 0.00 0.00 36.16 1.94
2978 4961 9.403110 CAAAACAATGTTTCCAATTGTCAAAAA 57.597 25.926 12.11 0.00 37.52 1.94
2979 4962 8.786898 TCAAAACAATGTTTCCAATTGTCAAAA 58.213 25.926 12.11 0.00 37.52 2.44
2980 4963 8.327941 TCAAAACAATGTTTCCAATTGTCAAA 57.672 26.923 12.11 0.33 37.52 2.69
2981 4964 7.912056 TCAAAACAATGTTTCCAATTGTCAA 57.088 28.000 12.11 0.00 37.52 3.18
2982 4965 8.396390 CAATCAAAACAATGTTTCCAATTGTCA 58.604 29.630 12.11 0.00 37.52 3.58
2983 4966 7.376601 GCAATCAAAACAATGTTTCCAATTGTC 59.623 33.333 24.74 18.63 37.52 3.18
2984 4967 7.148120 TGCAATCAAAACAATGTTTCCAATTGT 60.148 29.630 24.74 6.81 39.88 2.71
2985 4968 7.194278 TGCAATCAAAACAATGTTTCCAATTG 58.806 30.769 22.50 22.50 0.00 2.32
2986 4969 7.330900 TGCAATCAAAACAATGTTTCCAATT 57.669 28.000 12.11 9.10 0.00 2.32
2987 4970 6.939132 TGCAATCAAAACAATGTTTCCAAT 57.061 29.167 12.11 3.67 0.00 3.16
2988 4971 6.541278 TCATGCAATCAAAACAATGTTTCCAA 59.459 30.769 12.11 1.40 0.00 3.53
2989 4972 6.053650 TCATGCAATCAAAACAATGTTTCCA 58.946 32.000 12.11 2.16 0.00 3.53
2990 4973 6.542574 TCATGCAATCAAAACAATGTTTCC 57.457 33.333 12.11 0.00 0.00 3.13
2991 4974 7.408123 TGTTCATGCAATCAAAACAATGTTTC 58.592 30.769 12.11 0.00 0.00 2.78
2992 4975 7.317842 TGTTCATGCAATCAAAACAATGTTT 57.682 28.000 5.41 5.41 0.00 2.83
2993 4976 6.922247 TGTTCATGCAATCAAAACAATGTT 57.078 29.167 0.00 0.00 0.00 2.71
2994 4977 8.780846 ATATGTTCATGCAATCAAAACAATGT 57.219 26.923 0.00 0.00 0.00 2.71
2997 4980 9.269453 TGAAATATGTTCATGCAATCAAAACAA 57.731 25.926 0.00 0.00 0.00 2.83
2998 4981 8.828688 TGAAATATGTTCATGCAATCAAAACA 57.171 26.923 0.00 0.00 0.00 2.83
2999 4982 9.142515 TCTGAAATATGTTCATGCAATCAAAAC 57.857 29.630 0.00 0.00 0.00 2.43
3000 4983 9.708092 TTCTGAAATATGTTCATGCAATCAAAA 57.292 25.926 0.00 0.00 0.00 2.44
3001 4984 9.708092 TTTCTGAAATATGTTCATGCAATCAAA 57.292 25.926 0.00 0.00 0.00 2.69
3002 4985 9.708092 TTTTCTGAAATATGTTCATGCAATCAA 57.292 25.926 3.31 0.00 0.00 2.57
3003 4986 9.361315 CTTTTCTGAAATATGTTCATGCAATCA 57.639 29.630 3.31 0.00 0.00 2.57
3004 4987 9.577110 TCTTTTCTGAAATATGTTCATGCAATC 57.423 29.630 3.31 0.00 0.00 2.67
3005 4988 9.362539 GTCTTTTCTGAAATATGTTCATGCAAT 57.637 29.630 3.31 0.00 0.00 3.56
3006 4989 7.538334 CGTCTTTTCTGAAATATGTTCATGCAA 59.462 33.333 3.31 0.00 0.00 4.08
3007 4990 7.022979 CGTCTTTTCTGAAATATGTTCATGCA 58.977 34.615 3.31 0.00 0.00 3.96
3008 4991 7.243487 TCGTCTTTTCTGAAATATGTTCATGC 58.757 34.615 3.31 0.00 0.00 4.06
3009 4992 9.055248 GTTCGTCTTTTCTGAAATATGTTCATG 57.945 33.333 3.31 0.00 0.00 3.07
3010 4993 8.237267 GGTTCGTCTTTTCTGAAATATGTTCAT 58.763 33.333 3.31 0.00 0.00 2.57
3011 4994 7.444183 AGGTTCGTCTTTTCTGAAATATGTTCA 59.556 33.333 3.31 0.00 0.00 3.18
3012 4995 7.807680 AGGTTCGTCTTTTCTGAAATATGTTC 58.192 34.615 3.31 0.85 0.00 3.18
3013 4996 7.745620 AGGTTCGTCTTTTCTGAAATATGTT 57.254 32.000 3.31 0.00 0.00 2.71
3014 4997 7.745620 AAGGTTCGTCTTTTCTGAAATATGT 57.254 32.000 3.31 0.00 0.00 2.29
3015 4998 9.463443 AAAAAGGTTCGTCTTTTCTGAAATATG 57.537 29.630 3.31 1.89 43.64 1.78
3039 5022 4.849111 AAAATGTTCGCGCTTTCAAAAA 57.151 31.818 5.56 0.00 0.00 1.94
3040 5023 4.327357 TGAAAAATGTTCGCGCTTTCAAAA 59.673 33.333 14.11 0.00 34.10 2.44
3041 5024 3.859961 TGAAAAATGTTCGCGCTTTCAAA 59.140 34.783 14.11 0.00 34.10 2.69
3042 5025 3.241784 GTGAAAAATGTTCGCGCTTTCAA 59.758 39.130 17.03 3.33 37.65 2.69
3043 5026 2.786578 GTGAAAAATGTTCGCGCTTTCA 59.213 40.909 12.89 12.89 34.51 2.69
3044 5027 2.786578 TGTGAAAAATGTTCGCGCTTTC 59.213 40.909 5.56 7.46 0.00 2.62
3045 5028 2.803451 TGTGAAAAATGTTCGCGCTTT 58.197 38.095 5.56 0.00 0.00 3.51
3046 5029 2.483583 TGTGAAAAATGTTCGCGCTT 57.516 40.000 5.56 0.00 0.00 4.68
3047 5030 2.483583 TTGTGAAAAATGTTCGCGCT 57.516 40.000 5.56 0.00 0.00 5.92
3048 5031 2.786578 TCTTTGTGAAAAATGTTCGCGC 59.213 40.909 0.00 0.00 0.00 6.86
3049 5032 4.674662 TCATCTTTGTGAAAAATGTTCGCG 59.325 37.500 0.00 0.00 0.00 5.87
3050 5033 6.019961 TGTTCATCTTTGTGAAAAATGTTCGC 60.020 34.615 0.00 0.00 39.61 4.70
3051 5034 7.448588 TGTTCATCTTTGTGAAAAATGTTCG 57.551 32.000 0.00 0.00 39.61 3.95
3052 5035 9.640974 CAATGTTCATCTTTGTGAAAAATGTTC 57.359 29.630 0.00 0.00 39.61 3.18
3053 5036 9.165035 ACAATGTTCATCTTTGTGAAAAATGTT 57.835 25.926 0.00 0.00 40.99 2.71
3054 5037 8.721019 ACAATGTTCATCTTTGTGAAAAATGT 57.279 26.923 0.00 0.00 40.99 2.71
3055 5038 9.991388 AAACAATGTTCATCTTTGTGAAAAATG 57.009 25.926 0.00 0.00 41.44 2.32
3056 5039 9.991388 CAAACAATGTTCATCTTTGTGAAAAAT 57.009 25.926 0.00 0.00 41.44 1.82
3057 5040 8.449397 CCAAACAATGTTCATCTTTGTGAAAAA 58.551 29.630 0.00 0.00 41.44 1.94
3058 5041 7.821359 TCCAAACAATGTTCATCTTTGTGAAAA 59.179 29.630 0.00 0.00 41.44 2.29
3059 5042 7.326454 TCCAAACAATGTTCATCTTTGTGAAA 58.674 30.769 0.00 0.00 41.44 2.69
3060 5043 6.871844 TCCAAACAATGTTCATCTTTGTGAA 58.128 32.000 0.00 0.00 41.44 3.18
3061 5044 6.462552 TCCAAACAATGTTCATCTTTGTGA 57.537 33.333 0.00 0.00 41.44 3.58
3062 5045 6.292488 GCTTCCAAACAATGTTCATCTTTGTG 60.292 38.462 0.00 0.00 41.44 3.33
3063 5046 5.754890 GCTTCCAAACAATGTTCATCTTTGT 59.245 36.000 0.00 0.00 43.21 2.83
3064 5047 5.107760 CGCTTCCAAACAATGTTCATCTTTG 60.108 40.000 0.00 0.00 37.27 2.77
3065 5048 4.984161 CGCTTCCAAACAATGTTCATCTTT 59.016 37.500 0.00 0.00 0.00 2.52
3066 5049 4.037923 ACGCTTCCAAACAATGTTCATCTT 59.962 37.500 0.00 0.00 0.00 2.40
3067 5050 3.569701 ACGCTTCCAAACAATGTTCATCT 59.430 39.130 0.00 0.00 0.00 2.90
3068 5051 3.670055 CACGCTTCCAAACAATGTTCATC 59.330 43.478 0.00 0.00 0.00 2.92
3069 5052 3.317711 TCACGCTTCCAAACAATGTTCAT 59.682 39.130 0.00 0.00 0.00 2.57
3070 5053 2.685388 TCACGCTTCCAAACAATGTTCA 59.315 40.909 0.00 0.00 0.00 3.18
3071 5054 3.347958 TCACGCTTCCAAACAATGTTC 57.652 42.857 0.00 0.00 0.00 3.18
3072 5055 3.119316 TGTTCACGCTTCCAAACAATGTT 60.119 39.130 0.00 0.00 0.00 2.71
3073 5056 2.425312 TGTTCACGCTTCCAAACAATGT 59.575 40.909 0.00 0.00 0.00 2.71
3074 5057 3.077229 TGTTCACGCTTCCAAACAATG 57.923 42.857 0.00 0.00 0.00 2.82
3075 5058 4.320608 AATGTTCACGCTTCCAAACAAT 57.679 36.364 0.00 0.00 35.46 2.71
3076 5059 3.791973 AATGTTCACGCTTCCAAACAA 57.208 38.095 0.00 0.00 35.46 2.83
3077 5060 3.791973 AAATGTTCACGCTTCCAAACA 57.208 38.095 0.00 0.00 36.19 2.83
3078 5061 4.564769 TGAAAAATGTTCACGCTTCCAAAC 59.435 37.500 0.00 0.00 0.00 2.93
3079 5062 4.748892 TGAAAAATGTTCACGCTTCCAAA 58.251 34.783 0.00 0.00 0.00 3.28
3080 5063 4.377839 TGAAAAATGTTCACGCTTCCAA 57.622 36.364 0.00 0.00 0.00 3.53
3081 5064 4.377839 TTGAAAAATGTTCACGCTTCCA 57.622 36.364 0.00 0.00 0.00 3.53
3082 5065 5.710613 TTTTGAAAAATGTTCACGCTTCC 57.289 34.783 0.00 0.00 0.00 3.46
3083 5066 7.522555 CGTATTTTTGAAAAATGTTCACGCTTC 59.477 33.333 22.30 0.00 0.00 3.86
3084 5067 7.221067 TCGTATTTTTGAAAAATGTTCACGCTT 59.779 29.630 22.30 0.00 0.00 4.68
3085 5068 6.693545 TCGTATTTTTGAAAAATGTTCACGCT 59.306 30.769 22.30 0.26 0.00 5.07
3086 5069 6.858057 TCGTATTTTTGAAAAATGTTCACGC 58.142 32.000 22.30 6.24 0.00 5.34
3087 5070 8.686418 TGATCGTATTTTTGAAAAATGTTCACG 58.314 29.630 22.30 21.71 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.