Multiple sequence alignment - TraesCS2A01G101900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G101900 chr2A 100.000 3637 0 0 1 3637 54881350 54884986 0.000000e+00 6717.0
1 TraesCS2A01G101900 chr2A 84.098 1723 138 71 999 2639 54955515 54953847 0.000000e+00 1539.0
2 TraesCS2A01G101900 chr2B 91.628 1732 75 36 996 2669 85073981 85075700 0.000000e+00 2331.0
3 TraesCS2A01G101900 chr2B 85.704 1413 94 52 645 1976 85178331 85176946 0.000000e+00 1391.0
4 TraesCS2A01G101900 chr2B 91.148 610 52 2 2912 3520 85077611 85078219 0.000000e+00 826.0
5 TraesCS2A01G101900 chr2B 81.085 719 75 27 1955 2639 85176932 85176241 5.380000e-143 518.0
6 TraesCS2A01G101900 chr2B 89.344 122 13 0 3516 3637 85083259 85083380 1.750000e-33 154.0
7 TraesCS2A01G101900 chr2B 84.810 79 9 3 205 282 85178610 85178534 3.890000e-10 76.8
8 TraesCS2A01G101900 chr2D 90.145 1725 81 44 1009 2671 54317500 54319197 0.000000e+00 2161.0
9 TraesCS2A01G101900 chr2D 90.488 841 38 18 1009 1810 54488003 54487166 0.000000e+00 1072.0
10 TraesCS2A01G101900 chr2D 88.996 727 57 12 2912 3637 54319444 54320148 0.000000e+00 878.0
11 TraesCS2A01G101900 chr2D 82.548 722 63 26 1953 2639 54487019 54486326 8.760000e-161 577.0
12 TraesCS2A01G101900 chr2D 83.796 216 22 7 2709 2913 54319201 54319414 3.710000e-45 193.0
13 TraesCS2A01G101900 chr2D 87.349 166 11 8 791 949 54488274 54488112 8.020000e-42 182.0
14 TraesCS2A01G101900 chr4D 85.846 325 37 8 1258 1579 304690478 304690796 1.620000e-88 337.0
15 TraesCS2A01G101900 chr4D 89.933 149 15 0 1033 1181 304690191 304690339 3.710000e-45 193.0
16 TraesCS2A01G101900 chr4B 85.538 325 38 7 1258 1579 380653769 380654087 7.530000e-87 331.0
17 TraesCS2A01G101900 chr4B 89.933 149 15 0 1033 1181 380653478 380653626 3.710000e-45 193.0
18 TraesCS2A01G101900 chr4A 86.364 308 35 5 1277 1582 174157172 174156870 2.710000e-86 329.0
19 TraesCS2A01G101900 chr4A 90.604 149 14 0 1033 1181 174157472 174157324 7.970000e-47 198.0
20 TraesCS2A01G101900 chr5A 78.189 486 81 17 1046 1514 317248159 317247682 1.650000e-73 287.0
21 TraesCS2A01G101900 chr5A 90.909 77 7 0 3561 3637 353066479 353066555 1.790000e-18 104.0
22 TraesCS2A01G101900 chr1A 81.935 155 24 4 1033 1185 459188396 459188244 1.060000e-25 128.0
23 TraesCS2A01G101900 chr5B 83.333 84 7 4 3561 3637 298696154 298696237 1.810000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G101900 chr2A 54881350 54884986 3636 False 6717.000000 6717 100.000000 1 3637 1 chr2A.!!$F1 3636
1 TraesCS2A01G101900 chr2A 54953847 54955515 1668 True 1539.000000 1539 84.098000 999 2639 1 chr2A.!!$R1 1640
2 TraesCS2A01G101900 chr2B 85073981 85078219 4238 False 1578.500000 2331 91.388000 996 3520 2 chr2B.!!$F2 2524
3 TraesCS2A01G101900 chr2B 85176241 85178610 2369 True 661.933333 1391 83.866333 205 2639 3 chr2B.!!$R1 2434
4 TraesCS2A01G101900 chr2D 54317500 54320148 2648 False 1077.333333 2161 87.645667 1009 3637 3 chr2D.!!$F1 2628
5 TraesCS2A01G101900 chr2D 54486326 54488274 1948 True 610.333333 1072 86.795000 791 2639 3 chr2D.!!$R1 1848
6 TraesCS2A01G101900 chr4D 304690191 304690796 605 False 265.000000 337 87.889500 1033 1579 2 chr4D.!!$F1 546
7 TraesCS2A01G101900 chr4B 380653478 380654087 609 False 262.000000 331 87.735500 1033 1579 2 chr4B.!!$F1 546
8 TraesCS2A01G101900 chr4A 174156870 174157472 602 True 263.500000 329 88.484000 1033 1582 2 chr4A.!!$R1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 362 0.036765 TCGGTCGACAAAATGGAGGG 60.037 55.0 18.91 0.00 0.00 4.30 F
990 1049 0.041400 TTTTGATCGTGTGTGCAGCG 60.041 50.0 0.00 0.00 0.00 5.18 F
1673 1946 0.384725 GTGCAACAGTGTCACGCATC 60.385 55.0 15.46 8.03 36.32 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 2261 0.032815 GCTGCCACTAGCTAGCTACC 59.967 60.0 20.67 9.64 44.23 3.18 R
2225 2598 0.170561 GCTGGTGATTCTGCTGCTTG 59.829 55.0 0.00 0.00 0.00 4.01 R
3219 5335 0.037326 CTGCCTTGTGGAGCTTACGA 60.037 55.0 0.00 0.00 34.57 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.768215 AACATCTTATTTTTAAGAATGGAGGGA 57.232 29.630 1.59 0.00 39.26 4.20
43 44 9.413734 ACATCTTATTTTTAAGAATGGAGGGAG 57.586 33.333 1.59 0.00 39.26 4.30
44 45 9.413734 CATCTTATTTTTAAGAATGGAGGGAGT 57.586 33.333 1.59 0.00 39.26 3.85
46 47 9.901172 TCTTATTTTTAAGAATGGAGGGAGTAC 57.099 33.333 1.59 0.00 33.55 2.73
47 48 9.907229 CTTATTTTTAAGAATGGAGGGAGTACT 57.093 33.333 0.00 0.00 0.00 2.73
50 51 9.601810 ATTTTTAAGAATGGAGGGAGTACTTTT 57.398 29.630 0.00 0.00 0.00 2.27
55 56 8.581253 AAGAATGGAGGGAGTACTTTTATTTG 57.419 34.615 0.00 0.00 0.00 2.32
56 57 7.699878 AGAATGGAGGGAGTACTTTTATTTGT 58.300 34.615 0.00 0.00 0.00 2.83
57 58 8.832735 AGAATGGAGGGAGTACTTTTATTTGTA 58.167 33.333 0.00 0.00 0.00 2.41
58 59 9.110502 GAATGGAGGGAGTACTTTTATTTGTAG 57.889 37.037 0.00 0.00 0.00 2.74
59 60 6.412214 TGGAGGGAGTACTTTTATTTGTAGC 58.588 40.000 0.00 0.00 0.00 3.58
60 61 6.013206 TGGAGGGAGTACTTTTATTTGTAGCA 60.013 38.462 0.00 0.00 0.00 3.49
61 62 6.882678 GGAGGGAGTACTTTTATTTGTAGCAA 59.117 38.462 0.00 0.00 0.00 3.91
62 63 7.556635 GGAGGGAGTACTTTTATTTGTAGCAAT 59.443 37.037 0.00 0.00 0.00 3.56
63 64 8.879427 AGGGAGTACTTTTATTTGTAGCAATT 57.121 30.769 0.00 0.00 0.00 2.32
64 65 8.739972 AGGGAGTACTTTTATTTGTAGCAATTG 58.260 33.333 0.00 0.00 0.00 2.32
65 66 7.488150 GGGAGTACTTTTATTTGTAGCAATTGC 59.512 37.037 23.05 23.05 42.49 3.56
66 67 8.026607 GGAGTACTTTTATTTGTAGCAATTGCA 58.973 33.333 30.89 14.94 45.16 4.08
67 68 8.742554 AGTACTTTTATTTGTAGCAATTGCAC 57.257 30.769 30.89 24.42 45.16 4.57
68 69 7.812669 AGTACTTTTATTTGTAGCAATTGCACC 59.187 33.333 30.89 20.43 45.16 5.01
69 70 6.758254 ACTTTTATTTGTAGCAATTGCACCT 58.242 32.000 30.89 14.14 45.16 4.00
70 71 7.216494 ACTTTTATTTGTAGCAATTGCACCTT 58.784 30.769 30.89 13.77 45.16 3.50
71 72 7.714813 ACTTTTATTTGTAGCAATTGCACCTTT 59.285 29.630 30.89 13.39 45.16 3.11
72 73 9.202273 CTTTTATTTGTAGCAATTGCACCTTTA 57.798 29.630 30.89 12.34 45.16 1.85
73 74 9.547753 TTTTATTTGTAGCAATTGCACCTTTAA 57.452 25.926 30.89 17.30 45.16 1.52
74 75 9.547753 TTTATTTGTAGCAATTGCACCTTTAAA 57.452 25.926 30.89 21.14 45.16 1.52
75 76 9.547753 TTATTTGTAGCAATTGCACCTTTAAAA 57.452 25.926 30.89 19.68 45.16 1.52
76 77 7.849804 TTTGTAGCAATTGCACCTTTAAAAA 57.150 28.000 30.89 17.84 45.16 1.94
100 101 8.887036 AAAACTTCCATAAATGAAACCAAGTC 57.113 30.769 0.00 0.00 0.00 3.01
101 102 7.839680 AACTTCCATAAATGAAACCAAGTCT 57.160 32.000 0.00 0.00 0.00 3.24
102 103 8.934023 AACTTCCATAAATGAAACCAAGTCTA 57.066 30.769 0.00 0.00 0.00 2.59
103 104 9.533831 AACTTCCATAAATGAAACCAAGTCTAT 57.466 29.630 0.00 0.00 0.00 1.98
113 114 9.965824 AATGAAACCAAGTCTATAAACAACAAG 57.034 29.630 0.00 0.00 0.00 3.16
114 115 8.740123 TGAAACCAAGTCTATAAACAACAAGA 57.260 30.769 0.00 0.00 0.00 3.02
115 116 8.836413 TGAAACCAAGTCTATAAACAACAAGAG 58.164 33.333 0.00 0.00 0.00 2.85
116 117 8.974060 AAACCAAGTCTATAAACAACAAGAGA 57.026 30.769 0.00 0.00 0.00 3.10
117 118 8.974060 AACCAAGTCTATAAACAACAAGAGAA 57.026 30.769 0.00 0.00 0.00 2.87
118 119 8.974060 ACCAAGTCTATAAACAACAAGAGAAA 57.026 30.769 0.00 0.00 0.00 2.52
119 120 9.574516 ACCAAGTCTATAAACAACAAGAGAAAT 57.425 29.630 0.00 0.00 0.00 2.17
127 128 6.937436 AAACAACAAGAGAAATAACTCGGT 57.063 33.333 0.00 0.00 41.25 4.69
128 129 6.937436 AACAACAAGAGAAATAACTCGGTT 57.063 33.333 0.00 0.00 41.25 4.44
129 130 6.541111 ACAACAAGAGAAATAACTCGGTTC 57.459 37.500 0.00 0.00 41.25 3.62
130 131 6.289064 ACAACAAGAGAAATAACTCGGTTCT 58.711 36.000 0.00 0.00 41.25 3.01
131 132 6.766467 ACAACAAGAGAAATAACTCGGTTCTT 59.234 34.615 0.00 0.00 41.25 2.52
132 133 7.282450 ACAACAAGAGAAATAACTCGGTTCTTT 59.718 33.333 0.00 1.64 41.25 2.52
133 134 7.190920 ACAAGAGAAATAACTCGGTTCTTTG 57.809 36.000 5.36 0.00 41.25 2.77
134 135 5.864628 AGAGAAATAACTCGGTTCTTTGC 57.135 39.130 5.36 0.00 41.25 3.68
135 136 5.305585 AGAGAAATAACTCGGTTCTTTGCA 58.694 37.500 5.36 0.00 41.25 4.08
136 137 5.940470 AGAGAAATAACTCGGTTCTTTGCAT 59.060 36.000 0.00 0.00 41.25 3.96
137 138 6.431234 AGAGAAATAACTCGGTTCTTTGCATT 59.569 34.615 0.00 0.00 41.25 3.56
138 139 6.612306 AGAAATAACTCGGTTCTTTGCATTC 58.388 36.000 0.00 0.00 0.00 2.67
139 140 4.965119 ATAACTCGGTTCTTTGCATTCC 57.035 40.909 0.00 0.00 0.00 3.01
140 141 1.156736 ACTCGGTTCTTTGCATTCCG 58.843 50.000 0.00 0.00 42.12 4.30
141 142 1.270625 ACTCGGTTCTTTGCATTCCGA 60.271 47.619 14.11 14.11 46.14 4.55
142 143 1.885560 TCGGTTCTTTGCATTCCGAA 58.114 45.000 13.03 1.04 45.52 4.30
143 144 2.432444 TCGGTTCTTTGCATTCCGAAT 58.568 42.857 13.03 0.00 45.52 3.34
144 145 2.161410 TCGGTTCTTTGCATTCCGAATG 59.839 45.455 15.63 15.63 45.52 2.67
145 146 2.161410 CGGTTCTTTGCATTCCGAATGA 59.839 45.455 22.76 7.12 43.22 2.57
146 147 3.728864 CGGTTCTTTGCATTCCGAATGAG 60.729 47.826 22.76 12.30 43.22 2.90
147 148 3.440173 GGTTCTTTGCATTCCGAATGAGA 59.560 43.478 22.76 14.16 41.46 3.27
148 149 4.082787 GGTTCTTTGCATTCCGAATGAGAA 60.083 41.667 22.76 18.33 41.46 2.87
149 150 5.393461 GGTTCTTTGCATTCCGAATGAGAAT 60.393 40.000 22.76 0.00 41.46 2.40
150 151 6.183360 GGTTCTTTGCATTCCGAATGAGAATA 60.183 38.462 22.76 7.73 41.46 1.75
151 152 7.250569 GTTCTTTGCATTCCGAATGAGAATAA 58.749 34.615 22.76 12.17 41.46 1.40
152 153 6.785191 TCTTTGCATTCCGAATGAGAATAAC 58.215 36.000 22.76 5.67 41.46 1.89
153 154 5.499139 TTGCATTCCGAATGAGAATAACC 57.501 39.130 22.76 5.03 41.46 2.85
154 155 3.882888 TGCATTCCGAATGAGAATAACCC 59.117 43.478 22.76 4.40 41.46 4.11
155 156 3.882888 GCATTCCGAATGAGAATAACCCA 59.117 43.478 22.76 0.00 41.46 4.51
156 157 4.261197 GCATTCCGAATGAGAATAACCCAC 60.261 45.833 22.76 0.00 41.46 4.61
157 158 3.553828 TCCGAATGAGAATAACCCACC 57.446 47.619 0.00 0.00 0.00 4.61
158 159 2.171870 TCCGAATGAGAATAACCCACCC 59.828 50.000 0.00 0.00 0.00 4.61
159 160 2.572290 CGAATGAGAATAACCCACCCC 58.428 52.381 0.00 0.00 0.00 4.95
160 161 2.572290 GAATGAGAATAACCCACCCCG 58.428 52.381 0.00 0.00 0.00 5.73
161 162 1.887797 ATGAGAATAACCCACCCCGA 58.112 50.000 0.00 0.00 0.00 5.14
162 163 0.906775 TGAGAATAACCCACCCCGAC 59.093 55.000 0.00 0.00 0.00 4.79
163 164 0.906775 GAGAATAACCCACCCCGACA 59.093 55.000 0.00 0.00 0.00 4.35
164 165 1.279846 GAGAATAACCCACCCCGACAA 59.720 52.381 0.00 0.00 0.00 3.18
165 166 1.706305 AGAATAACCCACCCCGACAAA 59.294 47.619 0.00 0.00 0.00 2.83
166 167 2.310647 AGAATAACCCACCCCGACAAAT 59.689 45.455 0.00 0.00 0.00 2.32
167 168 2.137810 ATAACCCACCCCGACAAATG 57.862 50.000 0.00 0.00 0.00 2.32
168 169 1.065647 TAACCCACCCCGACAAATGA 58.934 50.000 0.00 0.00 0.00 2.57
169 170 0.251165 AACCCACCCCGACAAATGAG 60.251 55.000 0.00 0.00 0.00 2.90
170 171 2.046285 CCCACCCCGACAAATGAGC 61.046 63.158 0.00 0.00 0.00 4.26
171 172 2.398554 CCACCCCGACAAATGAGCG 61.399 63.158 0.00 0.00 0.00 5.03
172 173 2.046314 ACCCCGACAAATGAGCGG 60.046 61.111 10.82 10.82 44.42 5.52
173 174 2.046314 CCCCGACAAATGAGCGGT 60.046 61.111 14.65 0.00 43.35 5.68
174 175 2.106683 CCCCGACAAATGAGCGGTC 61.107 63.158 7.89 7.89 43.35 4.79
175 176 1.375396 CCCGACAAATGAGCGGTCA 60.375 57.895 21.02 21.02 43.35 4.02
176 177 0.953471 CCCGACAAATGAGCGGTCAA 60.953 55.000 22.64 5.27 43.35 3.18
177 178 0.443869 CCGACAAATGAGCGGTCAAG 59.556 55.000 22.64 16.25 40.17 3.02
178 179 0.179215 CGACAAATGAGCGGTCAAGC 60.179 55.000 22.64 8.23 35.88 4.01
179 180 0.169009 GACAAATGAGCGGTCAAGCC 59.831 55.000 22.64 3.55 35.88 4.35
191 192 2.619013 GTCAAGCCGGATGACAAAAG 57.381 50.000 26.73 0.35 45.13 2.27
192 193 1.880027 GTCAAGCCGGATGACAAAAGT 59.120 47.619 26.73 0.00 45.13 2.66
193 194 1.879380 TCAAGCCGGATGACAAAAGTG 59.121 47.619 5.05 0.00 0.00 3.16
194 195 1.608590 CAAGCCGGATGACAAAAGTGT 59.391 47.619 5.05 0.00 42.10 3.55
195 196 1.238439 AGCCGGATGACAAAAGTGTG 58.762 50.000 5.05 0.00 38.41 3.82
196 197 1.202758 AGCCGGATGACAAAAGTGTGA 60.203 47.619 5.05 0.00 38.41 3.58
197 198 1.197721 GCCGGATGACAAAAGTGTGAG 59.802 52.381 5.05 0.00 38.41 3.51
198 199 2.494059 CCGGATGACAAAAGTGTGAGT 58.506 47.619 0.00 0.00 38.41 3.41
199 200 3.659786 CCGGATGACAAAAGTGTGAGTA 58.340 45.455 0.00 0.00 38.41 2.59
200 201 4.062293 CCGGATGACAAAAGTGTGAGTAA 58.938 43.478 0.00 0.00 38.41 2.24
201 202 4.152402 CCGGATGACAAAAGTGTGAGTAAG 59.848 45.833 0.00 0.00 38.41 2.34
202 203 4.988540 CGGATGACAAAAGTGTGAGTAAGA 59.011 41.667 0.00 0.00 38.41 2.10
203 204 5.465390 CGGATGACAAAAGTGTGAGTAAGAA 59.535 40.000 0.00 0.00 38.41 2.52
204 205 6.018262 CGGATGACAAAAGTGTGAGTAAGAAA 60.018 38.462 0.00 0.00 38.41 2.52
205 206 7.355778 GGATGACAAAAGTGTGAGTAAGAAAG 58.644 38.462 0.00 0.00 38.41 2.62
206 207 7.226720 GGATGACAAAAGTGTGAGTAAGAAAGA 59.773 37.037 0.00 0.00 38.41 2.52
207 208 8.682936 ATGACAAAAGTGTGAGTAAGAAAGAT 57.317 30.769 0.00 0.00 38.41 2.40
208 209 8.506168 TGACAAAAGTGTGAGTAAGAAAGATT 57.494 30.769 0.00 0.00 38.41 2.40
209 210 9.607988 TGACAAAAGTGTGAGTAAGAAAGATTA 57.392 29.630 0.00 0.00 38.41 1.75
230 231 9.503427 AGATTAAACTTCTCAAAAACTTTCACG 57.497 29.630 0.00 0.00 0.00 4.35
233 234 9.849166 TTAAACTTCTCAAAAACTTTCACGAAT 57.151 25.926 0.00 0.00 0.00 3.34
234 235 7.971004 AACTTCTCAAAAACTTTCACGAATC 57.029 32.000 0.00 0.00 0.00 2.52
330 331 1.004292 GAAACCAAGTGTCCAACGACG 60.004 52.381 0.00 0.00 42.37 5.12
349 350 2.701073 GAGAGAAACAACTCGGTCGA 57.299 50.000 0.00 0.00 41.25 4.20
350 351 2.317684 GAGAGAAACAACTCGGTCGAC 58.682 52.381 7.13 7.13 41.25 4.20
352 353 2.100252 AGAGAAACAACTCGGTCGACAA 59.900 45.455 18.91 3.64 41.25 3.18
353 354 2.861935 GAGAAACAACTCGGTCGACAAA 59.138 45.455 18.91 3.24 0.00 2.83
354 355 3.264104 AGAAACAACTCGGTCGACAAAA 58.736 40.909 18.91 0.49 0.00 2.44
355 356 3.875134 AGAAACAACTCGGTCGACAAAAT 59.125 39.130 18.91 0.00 0.00 1.82
356 357 3.602390 AACAACTCGGTCGACAAAATG 57.398 42.857 18.91 11.40 0.00 2.32
357 358 1.871039 ACAACTCGGTCGACAAAATGG 59.129 47.619 18.91 4.95 0.00 3.16
358 359 2.139917 CAACTCGGTCGACAAAATGGA 58.860 47.619 18.91 3.48 0.00 3.41
361 362 0.036765 TCGGTCGACAAAATGGAGGG 60.037 55.000 18.91 0.00 0.00 4.30
362 363 0.036765 CGGTCGACAAAATGGAGGGA 60.037 55.000 18.91 0.00 0.00 4.20
364 365 1.003233 GGTCGACAAAATGGAGGGAGT 59.997 52.381 18.91 0.00 0.00 3.85
365 366 2.235402 GGTCGACAAAATGGAGGGAGTA 59.765 50.000 18.91 0.00 0.00 2.59
366 367 3.522553 GTCGACAAAATGGAGGGAGTAG 58.477 50.000 11.55 0.00 0.00 2.57
368 369 4.030913 TCGACAAAATGGAGGGAGTAGAT 58.969 43.478 0.00 0.00 0.00 1.98
369 370 4.469945 TCGACAAAATGGAGGGAGTAGATT 59.530 41.667 0.00 0.00 0.00 2.40
370 371 5.045869 TCGACAAAATGGAGGGAGTAGATTT 60.046 40.000 0.00 0.00 0.00 2.17
372 373 6.151144 CGACAAAATGGAGGGAGTAGATTTTT 59.849 38.462 0.00 0.00 0.00 1.94
373 374 7.468141 ACAAAATGGAGGGAGTAGATTTTTC 57.532 36.000 0.00 0.00 0.00 2.29
374 375 7.010160 ACAAAATGGAGGGAGTAGATTTTTCA 58.990 34.615 0.00 0.00 0.00 2.69
375 376 7.675619 ACAAAATGGAGGGAGTAGATTTTTCAT 59.324 33.333 0.00 0.00 0.00 2.57
377 378 4.526970 TGGAGGGAGTAGATTTTTCATGC 58.473 43.478 0.00 0.00 0.00 4.06
378 379 4.018506 TGGAGGGAGTAGATTTTTCATGCA 60.019 41.667 0.00 0.00 0.00 3.96
379 380 5.136105 GGAGGGAGTAGATTTTTCATGCAT 58.864 41.667 0.00 0.00 0.00 3.96
380 381 5.009410 GGAGGGAGTAGATTTTTCATGCATG 59.991 44.000 21.07 21.07 0.00 4.06
381 382 4.340381 AGGGAGTAGATTTTTCATGCATGC 59.660 41.667 22.25 11.82 0.00 4.06
382 383 4.340381 GGGAGTAGATTTTTCATGCATGCT 59.660 41.667 22.25 13.83 0.00 3.79
383 384 5.532406 GGGAGTAGATTTTTCATGCATGCTA 59.468 40.000 22.25 12.84 0.00 3.49
384 385 6.293845 GGGAGTAGATTTTTCATGCATGCTAG 60.294 42.308 22.25 11.36 0.00 3.42
385 386 6.484643 GGAGTAGATTTTTCATGCATGCTAGA 59.515 38.462 22.25 13.65 0.00 2.43
386 387 7.174599 GGAGTAGATTTTTCATGCATGCTAGAT 59.825 37.037 22.25 11.91 0.00 1.98
387 388 8.461249 AGTAGATTTTTCATGCATGCTAGATT 57.539 30.769 22.25 4.79 0.00 2.40
388 389 8.910944 AGTAGATTTTTCATGCATGCTAGATTT 58.089 29.630 22.25 9.92 0.00 2.17
389 390 9.178427 GTAGATTTTTCATGCATGCTAGATTTC 57.822 33.333 22.25 11.67 0.00 2.17
390 391 8.008513 AGATTTTTCATGCATGCTAGATTTCT 57.991 30.769 22.25 13.53 0.00 2.52
391 392 8.136165 AGATTTTTCATGCATGCTAGATTTCTC 58.864 33.333 22.25 7.82 0.00 2.87
392 393 5.762825 TTTCATGCATGCTAGATTTCTCC 57.237 39.130 22.25 0.00 0.00 3.71
393 394 3.748083 TCATGCATGCTAGATTTCTCCC 58.252 45.455 22.25 0.00 0.00 4.30
394 395 2.645838 TGCATGCTAGATTTCTCCCC 57.354 50.000 20.33 0.00 0.00 4.81
395 396 1.143684 TGCATGCTAGATTTCTCCCCC 59.856 52.381 20.33 0.00 0.00 5.40
396 397 1.423161 GCATGCTAGATTTCTCCCCCT 59.577 52.381 11.37 0.00 0.00 4.79
397 398 2.158549 GCATGCTAGATTTCTCCCCCTT 60.159 50.000 11.37 0.00 0.00 3.95
398 399 3.689569 GCATGCTAGATTTCTCCCCCTTT 60.690 47.826 11.37 0.00 0.00 3.11
399 400 4.540715 CATGCTAGATTTCTCCCCCTTTT 58.459 43.478 0.00 0.00 0.00 2.27
400 401 4.675063 TGCTAGATTTCTCCCCCTTTTT 57.325 40.909 0.00 0.00 0.00 1.94
401 402 4.600062 TGCTAGATTTCTCCCCCTTTTTC 58.400 43.478 0.00 0.00 0.00 2.29
402 403 4.292306 TGCTAGATTTCTCCCCCTTTTTCT 59.708 41.667 0.00 0.00 0.00 2.52
403 404 4.884744 GCTAGATTTCTCCCCCTTTTTCTC 59.115 45.833 0.00 0.00 0.00 2.87
404 405 5.573707 GCTAGATTTCTCCCCCTTTTTCTCA 60.574 44.000 0.00 0.00 0.00 3.27
405 406 5.339423 AGATTTCTCCCCCTTTTTCTCAA 57.661 39.130 0.00 0.00 0.00 3.02
406 407 5.328565 AGATTTCTCCCCCTTTTTCTCAAG 58.671 41.667 0.00 0.00 0.00 3.02
407 408 4.806952 TTTCTCCCCCTTTTTCTCAAGA 57.193 40.909 0.00 0.00 0.00 3.02
408 409 3.790089 TCTCCCCCTTTTTCTCAAGAC 57.210 47.619 0.00 0.00 0.00 3.01
409 410 2.038557 TCTCCCCCTTTTTCTCAAGACG 59.961 50.000 0.00 0.00 0.00 4.18
410 411 2.038557 CTCCCCCTTTTTCTCAAGACGA 59.961 50.000 0.00 0.00 0.00 4.20
411 412 2.642807 TCCCCCTTTTTCTCAAGACGAT 59.357 45.455 0.00 0.00 0.00 3.73
412 413 2.749621 CCCCCTTTTTCTCAAGACGATG 59.250 50.000 0.00 0.00 0.00 3.84
413 414 2.162408 CCCCTTTTTCTCAAGACGATGC 59.838 50.000 0.00 0.00 0.00 3.91
414 415 2.813754 CCCTTTTTCTCAAGACGATGCA 59.186 45.455 0.00 0.00 0.00 3.96
415 416 3.441572 CCCTTTTTCTCAAGACGATGCAT 59.558 43.478 0.00 0.00 0.00 3.96
416 417 4.409570 CCTTTTTCTCAAGACGATGCATG 58.590 43.478 2.46 0.00 0.00 4.06
417 418 3.476295 TTTTCTCAAGACGATGCATGC 57.524 42.857 11.82 11.82 0.00 4.06
418 419 2.391616 TTCTCAAGACGATGCATGCT 57.608 45.000 20.33 4.11 0.00 3.79
419 420 3.525268 TTCTCAAGACGATGCATGCTA 57.475 42.857 20.33 5.73 0.00 3.49
420 421 3.089573 TCTCAAGACGATGCATGCTAG 57.910 47.619 20.33 12.27 0.00 3.42
421 422 2.689983 TCTCAAGACGATGCATGCTAGA 59.310 45.455 20.33 0.00 0.00 2.43
422 423 3.320256 TCTCAAGACGATGCATGCTAGAT 59.680 43.478 20.33 3.62 0.00 1.98
423 424 4.056740 CTCAAGACGATGCATGCTAGATT 58.943 43.478 20.33 3.56 0.00 2.40
424 425 4.445453 TCAAGACGATGCATGCTAGATTT 58.555 39.130 20.33 3.81 0.00 2.17
425 426 4.877823 TCAAGACGATGCATGCTAGATTTT 59.122 37.500 20.33 4.33 0.00 1.82
426 427 5.355071 TCAAGACGATGCATGCTAGATTTTT 59.645 36.000 20.33 2.82 0.00 1.94
427 428 6.538381 TCAAGACGATGCATGCTAGATTTTTA 59.462 34.615 20.33 0.00 0.00 1.52
428 429 6.925610 AGACGATGCATGCTAGATTTTTAA 57.074 33.333 20.33 0.00 0.00 1.52
429 430 6.952743 AGACGATGCATGCTAGATTTTTAAG 58.047 36.000 20.33 0.06 0.00 1.85
430 431 6.763135 AGACGATGCATGCTAGATTTTTAAGA 59.237 34.615 20.33 0.00 0.00 2.10
431 432 7.280876 AGACGATGCATGCTAGATTTTTAAGAA 59.719 33.333 20.33 0.00 0.00 2.52
432 433 7.412853 ACGATGCATGCTAGATTTTTAAGAAG 58.587 34.615 20.33 0.00 0.00 2.85
433 434 6.854892 CGATGCATGCTAGATTTTTAAGAAGG 59.145 38.462 20.33 0.00 0.00 3.46
434 435 6.455360 TGCATGCTAGATTTTTAAGAAGGG 57.545 37.500 20.33 0.00 0.00 3.95
435 436 5.360714 TGCATGCTAGATTTTTAAGAAGGGG 59.639 40.000 20.33 0.00 0.00 4.79
436 437 5.594317 GCATGCTAGATTTTTAAGAAGGGGA 59.406 40.000 11.37 0.00 0.00 4.81
437 438 6.238869 GCATGCTAGATTTTTAAGAAGGGGAG 60.239 42.308 11.37 0.00 0.00 4.30
438 439 6.636454 TGCTAGATTTTTAAGAAGGGGAGA 57.364 37.500 0.00 0.00 0.00 3.71
439 440 7.213178 TGCTAGATTTTTAAGAAGGGGAGAT 57.787 36.000 0.00 0.00 0.00 2.75
440 441 8.331931 TGCTAGATTTTTAAGAAGGGGAGATA 57.668 34.615 0.00 0.00 0.00 1.98
441 442 8.949421 TGCTAGATTTTTAAGAAGGGGAGATAT 58.051 33.333 0.00 0.00 0.00 1.63
442 443 9.443323 GCTAGATTTTTAAGAAGGGGAGATATC 57.557 37.037 0.00 0.00 0.00 1.63
445 446 8.781951 AGATTTTTAAGAAGGGGAGATATCACA 58.218 33.333 5.32 0.00 0.00 3.58
446 447 9.579932 GATTTTTAAGAAGGGGAGATATCACAT 57.420 33.333 5.32 0.00 0.00 3.21
447 448 8.752005 TTTTTAAGAAGGGGAGATATCACATG 57.248 34.615 5.32 0.00 0.00 3.21
448 449 7.690454 TTTAAGAAGGGGAGATATCACATGA 57.310 36.000 5.32 0.00 0.00 3.07
449 450 5.822132 AAGAAGGGGAGATATCACATGAG 57.178 43.478 5.32 0.00 0.00 2.90
450 451 3.582208 AGAAGGGGAGATATCACATGAGC 59.418 47.826 5.32 0.00 0.00 4.26
451 452 1.898472 AGGGGAGATATCACATGAGCG 59.102 52.381 5.32 0.00 0.00 5.03
452 453 1.895798 GGGGAGATATCACATGAGCGA 59.104 52.381 5.32 0.00 0.00 4.93
453 454 2.094286 GGGGAGATATCACATGAGCGAG 60.094 54.545 5.32 0.00 0.00 5.03
454 455 2.094286 GGGAGATATCACATGAGCGAGG 60.094 54.545 5.32 0.00 0.00 4.63
455 456 2.822561 GGAGATATCACATGAGCGAGGA 59.177 50.000 5.32 0.00 0.00 3.71
456 457 3.366883 GGAGATATCACATGAGCGAGGAC 60.367 52.174 5.32 0.00 0.00 3.85
457 458 3.495331 AGATATCACATGAGCGAGGACT 58.505 45.455 5.32 0.00 0.00 3.85
458 459 3.505680 AGATATCACATGAGCGAGGACTC 59.494 47.826 5.32 0.00 37.19 3.36
459 460 0.749649 ATCACATGAGCGAGGACTCC 59.250 55.000 0.00 0.00 35.72 3.85
460 461 0.611896 TCACATGAGCGAGGACTCCA 60.612 55.000 0.00 0.00 35.72 3.86
461 462 0.463204 CACATGAGCGAGGACTCCAT 59.537 55.000 0.00 0.00 35.72 3.41
462 463 0.749649 ACATGAGCGAGGACTCCATC 59.250 55.000 0.00 0.00 35.72 3.51
463 464 0.318529 CATGAGCGAGGACTCCATCG 60.319 60.000 10.79 10.79 41.79 3.84
464 465 0.466372 ATGAGCGAGGACTCCATCGA 60.466 55.000 16.55 0.00 41.40 3.59
465 466 1.357334 GAGCGAGGACTCCATCGAC 59.643 63.158 16.55 10.12 41.40 4.20
466 467 1.377366 GAGCGAGGACTCCATCGACA 61.377 60.000 16.55 0.00 41.40 4.35
467 468 0.965866 AGCGAGGACTCCATCGACAA 60.966 55.000 16.55 0.00 41.40 3.18
468 469 0.108804 GCGAGGACTCCATCGACAAA 60.109 55.000 16.55 0.00 41.40 2.83
469 470 1.671850 GCGAGGACTCCATCGACAAAA 60.672 52.381 16.55 0.00 41.40 2.44
470 471 2.263077 CGAGGACTCCATCGACAAAAG 58.737 52.381 9.95 0.00 41.40 2.27
471 472 2.094700 CGAGGACTCCATCGACAAAAGA 60.095 50.000 9.95 0.00 41.40 2.52
472 473 3.614150 CGAGGACTCCATCGACAAAAGAA 60.614 47.826 9.95 0.00 41.40 2.52
473 474 4.315803 GAGGACTCCATCGACAAAAGAAA 58.684 43.478 0.00 0.00 0.00 2.52
474 475 4.065789 AGGACTCCATCGACAAAAGAAAC 58.934 43.478 0.00 0.00 0.00 2.78
475 476 3.188667 GGACTCCATCGACAAAAGAAACC 59.811 47.826 0.00 0.00 0.00 3.27
476 477 3.146847 ACTCCATCGACAAAAGAAACCC 58.853 45.455 0.00 0.00 0.00 4.11
477 478 3.146066 CTCCATCGACAAAAGAAACCCA 58.854 45.455 0.00 0.00 0.00 4.51
478 479 3.146066 TCCATCGACAAAAGAAACCCAG 58.854 45.455 0.00 0.00 0.00 4.45
479 480 2.351738 CCATCGACAAAAGAAACCCAGC 60.352 50.000 0.00 0.00 0.00 4.85
480 481 1.314730 TCGACAAAAGAAACCCAGCC 58.685 50.000 0.00 0.00 0.00 4.85
481 482 1.028905 CGACAAAAGAAACCCAGCCA 58.971 50.000 0.00 0.00 0.00 4.75
482 483 1.407258 CGACAAAAGAAACCCAGCCAA 59.593 47.619 0.00 0.00 0.00 4.52
483 484 2.798145 CGACAAAAGAAACCCAGCCAAC 60.798 50.000 0.00 0.00 0.00 3.77
484 485 1.136110 ACAAAAGAAACCCAGCCAACG 59.864 47.619 0.00 0.00 0.00 4.10
485 486 0.104120 AAAAGAAACCCAGCCAACGC 59.896 50.000 0.00 0.00 0.00 4.84
486 487 1.040339 AAAGAAACCCAGCCAACGCA 61.040 50.000 0.00 0.00 37.52 5.24
487 488 1.734388 AAGAAACCCAGCCAACGCAC 61.734 55.000 0.00 0.00 37.52 5.34
488 489 3.207547 GAAACCCAGCCAACGCACC 62.208 63.158 0.00 0.00 37.52 5.01
492 493 3.751246 CCAGCCAACGCACCCATG 61.751 66.667 0.00 0.00 37.52 3.66
502 503 4.749323 CACCCATGCACACCTCAT 57.251 55.556 0.00 0.00 0.00 2.90
503 504 2.485677 CACCCATGCACACCTCATC 58.514 57.895 0.00 0.00 0.00 2.92
504 505 1.033746 CACCCATGCACACCTCATCC 61.034 60.000 0.00 0.00 0.00 3.51
505 506 1.820906 CCCATGCACACCTCATCCG 60.821 63.158 0.00 0.00 0.00 4.18
506 507 1.820906 CCATGCACACCTCATCCGG 60.821 63.158 0.00 0.00 0.00 5.14
507 508 2.124570 ATGCACACCTCATCCGGC 60.125 61.111 0.00 0.00 0.00 6.13
508 509 3.704231 ATGCACACCTCATCCGGCC 62.704 63.158 0.00 0.00 0.00 6.13
510 511 4.838152 CACACCTCATCCGGCCGG 62.838 72.222 39.13 39.13 0.00 6.13
512 513 4.838152 CACCTCATCCGGCCGGTG 62.838 72.222 41.57 34.73 40.71 4.94
514 515 4.838152 CCTCATCCGGCCGGTGTG 62.838 72.222 41.57 36.27 36.47 3.82
531 532 3.550842 GGTGTGCAAGAAAGATTCCACAC 60.551 47.826 16.20 16.20 43.47 3.82
547 548 2.191513 CACTGGCACTTGCACAGCT 61.192 57.895 15.49 0.00 44.36 4.24
548 549 0.886043 CACTGGCACTTGCACAGCTA 60.886 55.000 15.49 0.00 44.36 3.32
549 550 0.604780 ACTGGCACTTGCACAGCTAG 60.605 55.000 13.65 13.65 44.36 3.42
550 551 1.919956 CTGGCACTTGCACAGCTAGC 61.920 60.000 6.62 6.62 44.36 3.42
551 552 1.673665 GGCACTTGCACAGCTAGCT 60.674 57.895 12.68 12.68 44.36 3.32
552 553 0.391661 GGCACTTGCACAGCTAGCTA 60.392 55.000 18.86 0.00 44.36 3.32
553 554 0.723981 GCACTTGCACAGCTAGCTAC 59.276 55.000 18.86 10.70 41.59 3.58
554 555 1.674221 GCACTTGCACAGCTAGCTACT 60.674 52.381 18.86 2.12 41.59 2.57
556 557 2.094286 CACTTGCACAGCTAGCTACTCT 60.094 50.000 18.86 0.00 35.00 3.24
557 558 3.129462 CACTTGCACAGCTAGCTACTCTA 59.871 47.826 18.86 5.22 35.00 2.43
558 559 3.129638 ACTTGCACAGCTAGCTACTCTAC 59.870 47.826 18.86 4.74 35.00 2.59
559 560 2.723273 TGCACAGCTAGCTACTCTACA 58.277 47.619 18.86 7.40 0.00 2.74
560 561 3.291584 TGCACAGCTAGCTACTCTACAT 58.708 45.455 18.86 0.00 0.00 2.29
561 562 3.067320 TGCACAGCTAGCTACTCTACATG 59.933 47.826 18.86 5.03 0.00 3.21
562 563 3.637432 CACAGCTAGCTACTCTACATGC 58.363 50.000 18.86 0.00 0.00 4.06
563 564 3.317711 CACAGCTAGCTACTCTACATGCT 59.682 47.826 18.86 0.00 39.30 3.79
564 565 4.517075 CACAGCTAGCTACTCTACATGCTA 59.483 45.833 18.86 0.00 37.02 3.49
581 582 6.789262 ACATGCTACTAGATTTTTCATGCAC 58.211 36.000 0.00 0.00 34.77 4.57
584 585 3.764885 ACTAGATTTTTCATGCACGCC 57.235 42.857 0.00 0.00 0.00 5.68
612 613 4.997905 TTTCTTGAGAGAATGAACGCTG 57.002 40.909 0.00 0.00 41.35 5.18
613 614 2.964740 TCTTGAGAGAATGAACGCTGG 58.035 47.619 0.00 0.00 0.00 4.85
614 615 2.562738 TCTTGAGAGAATGAACGCTGGA 59.437 45.455 0.00 0.00 0.00 3.86
615 616 3.196469 TCTTGAGAGAATGAACGCTGGAT 59.804 43.478 0.00 0.00 0.00 3.41
616 617 3.616956 TGAGAGAATGAACGCTGGATT 57.383 42.857 0.00 0.00 0.00 3.01
617 618 3.525537 TGAGAGAATGAACGCTGGATTC 58.474 45.455 0.00 0.00 0.00 2.52
623 624 2.839486 TGAACGCTGGATTCAAGAGT 57.161 45.000 0.00 0.00 33.16 3.24
630 631 2.481104 GCTGGATTCAAGAGTCGGAGAG 60.481 54.545 0.00 0.00 36.95 3.20
631 632 1.478510 TGGATTCAAGAGTCGGAGAGC 59.521 52.381 0.00 0.00 36.95 4.09
632 633 1.478510 GGATTCAAGAGTCGGAGAGCA 59.521 52.381 0.00 0.00 36.95 4.26
636 665 0.884514 CAAGAGTCGGAGAGCAGTGA 59.115 55.000 0.00 0.00 36.95 3.41
685 726 1.445410 CTCATCGACGCAAACGGGA 60.445 57.895 0.00 0.00 46.04 5.14
687 728 1.736645 CATCGACGCAAACGGGACT 60.737 57.895 0.00 0.00 46.04 3.85
720 761 3.062466 CCGACCTCCTCGCTGACA 61.062 66.667 0.00 0.00 41.46 3.58
739 782 2.279851 CACACACTCACGCCGGAA 60.280 61.111 5.05 0.00 0.00 4.30
740 783 1.667830 CACACACTCACGCCGGAAT 60.668 57.895 5.05 0.00 0.00 3.01
741 784 0.389296 CACACACTCACGCCGGAATA 60.389 55.000 5.05 0.00 0.00 1.75
742 785 0.319083 ACACACTCACGCCGGAATAA 59.681 50.000 5.05 0.00 0.00 1.40
743 786 1.066430 ACACACTCACGCCGGAATAAT 60.066 47.619 5.05 0.00 0.00 1.28
744 787 1.593006 CACACTCACGCCGGAATAATC 59.407 52.381 5.05 0.00 0.00 1.75
780 835 4.825679 GACCCCTCCCCCTCCCTG 62.826 77.778 0.00 0.00 0.00 4.45
782 837 3.373846 CCCCTCCCCCTCCCTGTA 61.374 72.222 0.00 0.00 0.00 2.74
783 838 2.040779 CCCTCCCCCTCCCTGTAC 60.041 72.222 0.00 0.00 0.00 2.90
784 839 2.784984 CCTCCCCCTCCCTGTACA 59.215 66.667 0.00 0.00 0.00 2.90
789 844 1.528824 CCCCTCCCTGTACATGCAG 59.471 63.158 0.00 0.00 36.31 4.41
801 856 1.816679 CATGCAGCTGCCGCTTCTA 60.817 57.895 34.64 15.72 46.47 2.10
807 862 2.187946 CTGCCGCTTCTACCCCTG 59.812 66.667 0.00 0.00 0.00 4.45
816 871 0.797579 TTCTACCCCTGGAGAACCCT 59.202 55.000 0.00 0.00 35.38 4.34
829 884 2.105993 GAGAACCCTAACAACCACAGGT 59.894 50.000 0.00 0.00 37.65 4.00
855 910 2.509336 CCCAGCGCTAACGGACAG 60.509 66.667 10.99 0.00 40.57 3.51
918 977 4.227134 CGGCCACTCGATCCCCAG 62.227 72.222 2.24 0.00 0.00 4.45
949 1008 0.178068 GTCTGGTCCAGTGTGTGTGT 59.822 55.000 18.65 0.00 32.61 3.72
950 1009 0.177836 TCTGGTCCAGTGTGTGTGTG 59.822 55.000 18.65 0.00 32.61 3.82
958 1017 1.083806 AGTGTGTGTGTGTGTGAGCG 61.084 55.000 0.00 0.00 0.00 5.03
973 1032 0.899019 GAGCGTCTCCCTTCCTCTTT 59.101 55.000 0.00 0.00 0.00 2.52
989 1048 1.264020 TCTTTTGATCGTGTGTGCAGC 59.736 47.619 0.00 0.00 0.00 5.25
990 1049 0.041400 TTTTGATCGTGTGTGCAGCG 60.041 50.000 0.00 0.00 0.00 5.18
991 1050 1.157257 TTTGATCGTGTGTGCAGCGT 61.157 50.000 0.00 0.00 0.00 5.07
992 1051 1.830368 TTGATCGTGTGTGCAGCGTG 61.830 55.000 0.00 0.00 0.00 5.34
993 1052 3.635734 GATCGTGTGTGCAGCGTGC 62.636 63.158 0.00 3.44 45.29 5.34
1398 1629 1.077501 CACCGACAAGCCCATCCAT 60.078 57.895 0.00 0.00 0.00 3.41
1603 1841 1.026718 CGTCCATCCCACTTGCTTCC 61.027 60.000 0.00 0.00 0.00 3.46
1606 1844 2.092429 GTCCATCCCACTTGCTTCCATA 60.092 50.000 0.00 0.00 0.00 2.74
1614 1852 6.252995 TCCCACTTGCTTCCATAAATTAGTT 58.747 36.000 0.00 0.00 0.00 2.24
1615 1853 7.406916 TCCCACTTGCTTCCATAAATTAGTTA 58.593 34.615 0.00 0.00 0.00 2.24
1673 1946 0.384725 GTGCAACAGTGTCACGCATC 60.385 55.000 15.46 8.03 36.32 3.91
1690 1963 3.368220 CGCATCCTATCCTGATCCTCTTG 60.368 52.174 0.00 0.00 0.00 3.02
1883 2185 8.486210 AGCTGTACTTTGATGAATGATACCTTA 58.514 33.333 0.00 0.00 0.00 2.69
1958 2261 0.729116 AACAGCTTCGCGATTGATGG 59.271 50.000 24.28 10.81 0.00 3.51
2050 2404 5.617252 ACCGGTACCGATATTGATTGATTT 58.383 37.500 35.41 0.00 42.83 2.17
2204 2577 4.547367 GGCGGCGCCTTCACCTAT 62.547 66.667 41.44 0.00 46.69 2.57
2225 2598 1.222936 CACCTGCAGACCCCTGATC 59.777 63.158 17.39 0.00 43.02 2.92
2235 2613 1.203441 ACCCCTGATCAAGCAGCAGA 61.203 55.000 0.00 0.00 34.56 4.26
2237 2615 1.409802 CCCCTGATCAAGCAGCAGAAT 60.410 52.381 0.00 0.00 34.56 2.40
2439 2842 4.208948 CGTACTACGCGCCGTCGA 62.209 66.667 5.73 0.00 41.54 4.20
2450 2853 3.417224 CCGTCGACGTCGTCTCCA 61.417 66.667 34.40 14.92 40.80 3.86
2639 3042 2.770164 TGCTTCCTCAGTTCTAAGCC 57.230 50.000 0.00 0.00 42.87 4.35
2675 3079 3.516615 CTTCTTCAGGATCTTCACGTCC 58.483 50.000 0.00 0.00 34.64 4.79
2676 3080 1.472878 TCTTCAGGATCTTCACGTCCG 59.527 52.381 0.00 0.00 39.54 4.79
2677 3081 1.202582 CTTCAGGATCTTCACGTCCGT 59.797 52.381 0.00 0.00 39.54 4.69
2678 3082 0.526211 TCAGGATCTTCACGTCCGTG 59.474 55.000 13.37 13.37 46.64 4.94
2693 3097 3.047280 GTGATGGCGCACGTTGGA 61.047 61.111 10.83 0.00 0.00 3.53
2694 3098 3.047280 TGATGGCGCACGTTGGAC 61.047 61.111 10.83 0.00 0.00 4.02
2696 3100 4.673298 ATGGCGCACGTTGGACGA 62.673 61.111 10.83 0.00 46.05 4.20
2697 3101 4.893601 TGGCGCACGTTGGACGAA 62.894 61.111 10.83 0.00 46.05 3.85
2698 3102 3.641986 GGCGCACGTTGGACGAAA 61.642 61.111 10.83 0.00 46.05 3.46
2699 3103 2.325166 GCGCACGTTGGACGAAAA 59.675 55.556 0.30 0.00 46.05 2.29
2700 3104 1.297745 GCGCACGTTGGACGAAAAA 60.298 52.632 0.30 0.00 46.05 1.94
2701 3105 1.259544 GCGCACGTTGGACGAAAAAG 61.260 55.000 0.30 0.00 46.05 2.27
2702 3106 0.302288 CGCACGTTGGACGAAAAAGA 59.698 50.000 7.54 0.00 46.05 2.52
2703 3107 1.267632 CGCACGTTGGACGAAAAAGAA 60.268 47.619 7.54 0.00 46.05 2.52
2704 3108 2.601266 CGCACGTTGGACGAAAAAGAAT 60.601 45.455 7.54 0.00 46.05 2.40
2705 3109 3.368495 GCACGTTGGACGAAAAAGAATT 58.632 40.909 7.54 0.00 46.05 2.17
2706 3110 3.420904 GCACGTTGGACGAAAAAGAATTC 59.579 43.478 7.54 0.00 46.05 2.17
2707 3111 4.788521 GCACGTTGGACGAAAAAGAATTCT 60.789 41.667 0.88 0.88 46.05 2.40
2719 3123 8.398665 ACGAAAAAGAATTCTTATATGACCTGC 58.601 33.333 20.76 2.18 34.61 4.85
2725 3129 8.894768 AGAATTCTTATATGACCTGCTTGTAC 57.105 34.615 0.88 0.00 0.00 2.90
2740 3144 3.794028 GCTTGTACGCTTCATCTCAGTAG 59.206 47.826 0.00 0.00 0.00 2.57
2748 3152 3.494048 GCTTCATCTCAGTAGACCCCATG 60.494 52.174 0.00 0.00 33.57 3.66
2749 3153 3.404869 TCATCTCAGTAGACCCCATGT 57.595 47.619 0.00 0.00 33.57 3.21
2758 3162 4.020751 CAGTAGACCCCATGTATCAGATGG 60.021 50.000 0.00 0.00 40.25 3.51
2790 3194 4.134379 TGCAAATCTCAAAGCAACCAAA 57.866 36.364 0.00 0.00 33.48 3.28
2793 3197 4.121317 CAAATCTCAAAGCAACCAAAGCA 58.879 39.130 0.00 0.00 0.00 3.91
2798 3202 0.908198 AAAGCAACCAAAGCACCCAA 59.092 45.000 0.00 0.00 0.00 4.12
2799 3203 0.177836 AAGCAACCAAAGCACCCAAC 59.822 50.000 0.00 0.00 0.00 3.77
2841 4916 7.260603 CCAAATCCTGGTGTTGATTAGAATTC 58.739 38.462 11.88 0.00 40.78 2.17
2935 5051 0.968405 GCAGGGCCAAATTGACAAGA 59.032 50.000 6.18 0.00 0.00 3.02
2984 5100 2.879756 GCCTACAAGCCAAACATCAGGA 60.880 50.000 0.00 0.00 0.00 3.86
3000 5116 0.179100 AGGAGCCAATCGTCGACATG 60.179 55.000 17.16 10.87 0.00 3.21
3016 5132 6.887376 TCGACATGACAAATTTAGCTAGAC 57.113 37.500 0.00 0.00 0.00 2.59
3076 5192 1.103987 TCCTCTTCGCCGATCCAGAG 61.104 60.000 7.21 7.21 33.77 3.35
3081 5197 0.108804 TTCGCCGATCCAGAGTCAAC 60.109 55.000 0.00 0.00 0.00 3.18
3083 5199 0.389817 CGCCGATCCAGAGTCAACAA 60.390 55.000 0.00 0.00 0.00 2.83
3084 5200 1.363744 GCCGATCCAGAGTCAACAAG 58.636 55.000 0.00 0.00 0.00 3.16
3106 5222 5.888105 AGCATCTTTGAAGCAACACATATC 58.112 37.500 0.00 0.00 0.00 1.63
3108 5224 4.944962 TCTTTGAAGCAACACATATCGG 57.055 40.909 0.00 0.00 0.00 4.18
3117 5233 1.758936 ACACATATCGGGAGTCGTCA 58.241 50.000 0.00 0.00 40.32 4.35
3167 5283 2.231235 CGCTAACCCTTGCCAAAAGAAT 59.769 45.455 0.00 0.00 0.00 2.40
3186 5302 4.704057 AGAATTTGAGCATCTTTCCAGACC 59.296 41.667 0.00 0.00 34.92 3.85
3272 5388 8.792633 TGACAAATTAGGAACAACCATCTTAAG 58.207 33.333 0.00 0.00 42.04 1.85
3318 5434 2.143602 TCCATAGAATTGGGAAGGGGG 58.856 52.381 0.00 0.00 37.37 5.40
3407 5523 7.281774 GGTGTTAGACAGATTCATGTTCATCAT 59.718 37.037 0.00 0.00 37.22 2.45
3409 5525 9.889128 TGTTAGACAGATTCATGTTCATCATAA 57.111 29.630 0.00 0.00 34.67 1.90
3465 5582 9.296400 CTCTTACTTAAATTGTCTCTAGTGAGC 57.704 37.037 0.00 0.00 40.03 4.26
3532 5649 4.988598 AACCGGACGCCAGCACAG 62.989 66.667 9.46 0.00 0.00 3.66
3558 5675 2.162906 TGGCAGGCTTTCTTCCCCT 61.163 57.895 0.00 0.00 0.00 4.79
3559 5676 1.680314 GGCAGGCTTTCTTCCCCTG 60.680 63.158 1.66 1.66 46.95 4.45
3568 5685 5.193728 AGGCTTTCTTCCCCTGTATATTTGA 59.806 40.000 0.00 0.00 0.00 2.69
3574 5691 7.465900 TCTTCCCCTGTATATTTGAAGGAAT 57.534 36.000 0.00 0.00 32.06 3.01
3575 5692 8.575736 TCTTCCCCTGTATATTTGAAGGAATA 57.424 34.615 0.00 0.00 32.06 1.75
3576 5693 9.182642 TCTTCCCCTGTATATTTGAAGGAATAT 57.817 33.333 0.00 0.00 36.47 1.28
3603 5720 3.412237 GGTGGCGCCTTAAGGATATTA 57.588 47.619 29.70 0.00 37.39 0.98
3607 5724 5.106277 GGTGGCGCCTTAAGGATATTAAATC 60.106 44.000 29.70 2.83 37.39 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.768215 TCCCTCCATTCTTAAAAATAAGATGTT 57.232 29.630 0.00 0.00 36.14 2.71
17 18 9.413734 CTCCCTCCATTCTTAAAAATAAGATGT 57.586 33.333 0.00 0.00 36.14 3.06
18 19 9.413734 ACTCCCTCCATTCTTAAAAATAAGATG 57.586 33.333 0.00 1.83 36.14 2.90
20 21 9.901172 GTACTCCCTCCATTCTTAAAAATAAGA 57.099 33.333 0.00 0.00 34.56 2.10
21 22 9.907229 AGTACTCCCTCCATTCTTAAAAATAAG 57.093 33.333 0.00 0.00 0.00 1.73
24 25 9.601810 AAAAGTACTCCCTCCATTCTTAAAAAT 57.398 29.630 0.00 0.00 0.00 1.82
29 30 9.681062 CAAATAAAAGTACTCCCTCCATTCTTA 57.319 33.333 0.00 0.00 0.00 2.10
30 31 8.170730 ACAAATAAAAGTACTCCCTCCATTCTT 58.829 33.333 0.00 0.00 0.00 2.52
31 32 7.699878 ACAAATAAAAGTACTCCCTCCATTCT 58.300 34.615 0.00 0.00 0.00 2.40
32 33 7.939784 ACAAATAAAAGTACTCCCTCCATTC 57.060 36.000 0.00 0.00 0.00 2.67
33 34 7.556635 GCTACAAATAAAAGTACTCCCTCCATT 59.443 37.037 0.00 0.00 0.00 3.16
34 35 7.054751 GCTACAAATAAAAGTACTCCCTCCAT 58.945 38.462 0.00 0.00 0.00 3.41
35 36 6.013206 TGCTACAAATAAAAGTACTCCCTCCA 60.013 38.462 0.00 0.00 0.00 3.86
36 37 6.412214 TGCTACAAATAAAAGTACTCCCTCC 58.588 40.000 0.00 0.00 0.00 4.30
37 38 7.916914 TTGCTACAAATAAAAGTACTCCCTC 57.083 36.000 0.00 0.00 0.00 4.30
38 39 8.739972 CAATTGCTACAAATAAAAGTACTCCCT 58.260 33.333 0.00 0.00 0.00 4.20
39 40 7.488150 GCAATTGCTACAAATAAAAGTACTCCC 59.512 37.037 23.21 0.00 38.21 4.30
40 41 8.026607 TGCAATTGCTACAAATAAAAGTACTCC 58.973 33.333 29.37 0.00 42.66 3.85
41 42 8.850452 GTGCAATTGCTACAAATAAAAGTACTC 58.150 33.333 29.37 0.00 42.66 2.59
42 43 7.812669 GGTGCAATTGCTACAAATAAAAGTACT 59.187 33.333 29.37 0.00 42.66 2.73
43 44 7.812669 AGGTGCAATTGCTACAAATAAAAGTAC 59.187 33.333 29.37 14.27 42.66 2.73
44 45 7.891561 AGGTGCAATTGCTACAAATAAAAGTA 58.108 30.769 29.37 2.61 42.66 2.24
45 46 6.758254 AGGTGCAATTGCTACAAATAAAAGT 58.242 32.000 29.37 2.52 42.66 2.66
46 47 7.656707 AAGGTGCAATTGCTACAAATAAAAG 57.343 32.000 29.37 0.00 42.66 2.27
47 48 9.547753 TTAAAGGTGCAATTGCTACAAATAAAA 57.452 25.926 29.37 11.12 42.66 1.52
48 49 9.547753 TTTAAAGGTGCAATTGCTACAAATAAA 57.452 25.926 29.37 21.48 42.66 1.40
49 50 9.547753 TTTTAAAGGTGCAATTGCTACAAATAA 57.452 25.926 29.37 17.79 42.66 1.40
50 51 9.547753 TTTTTAAAGGTGCAATTGCTACAAATA 57.452 25.926 29.37 13.51 42.66 1.40
51 52 8.443953 TTTTTAAAGGTGCAATTGCTACAAAT 57.556 26.923 29.37 14.42 42.66 2.32
52 53 7.849804 TTTTTAAAGGTGCAATTGCTACAAA 57.150 28.000 29.37 15.53 42.66 2.83
74 75 9.325198 GACTTGGTTTCATTTATGGAAGTTTTT 57.675 29.630 0.00 0.00 0.00 1.94
75 76 8.704668 AGACTTGGTTTCATTTATGGAAGTTTT 58.295 29.630 0.00 0.00 0.00 2.43
76 77 8.250143 AGACTTGGTTTCATTTATGGAAGTTT 57.750 30.769 0.00 0.00 0.00 2.66
77 78 7.839680 AGACTTGGTTTCATTTATGGAAGTT 57.160 32.000 0.00 0.00 0.00 2.66
87 88 9.965824 CTTGTTGTTTATAGACTTGGTTTCATT 57.034 29.630 0.00 0.00 0.00 2.57
88 89 9.349713 TCTTGTTGTTTATAGACTTGGTTTCAT 57.650 29.630 0.00 0.00 0.00 2.57
89 90 8.740123 TCTTGTTGTTTATAGACTTGGTTTCA 57.260 30.769 0.00 0.00 0.00 2.69
90 91 9.052759 TCTCTTGTTGTTTATAGACTTGGTTTC 57.947 33.333 0.00 0.00 0.00 2.78
91 92 8.974060 TCTCTTGTTGTTTATAGACTTGGTTT 57.026 30.769 0.00 0.00 0.00 3.27
92 93 8.974060 TTCTCTTGTTGTTTATAGACTTGGTT 57.026 30.769 0.00 0.00 0.00 3.67
93 94 8.974060 TTTCTCTTGTTGTTTATAGACTTGGT 57.026 30.769 0.00 0.00 0.00 3.67
101 102 9.715121 ACCGAGTTATTTCTCTTGTTGTTTATA 57.285 29.630 0.00 0.00 32.83 0.98
102 103 8.617290 ACCGAGTTATTTCTCTTGTTGTTTAT 57.383 30.769 0.00 0.00 32.83 1.40
103 104 8.441312 AACCGAGTTATTTCTCTTGTTGTTTA 57.559 30.769 0.00 0.00 31.21 2.01
104 105 6.937436 ACCGAGTTATTTCTCTTGTTGTTT 57.063 33.333 0.00 0.00 32.83 2.83
105 106 6.766467 AGAACCGAGTTATTTCTCTTGTTGTT 59.234 34.615 0.00 0.00 31.93 2.83
106 107 6.289064 AGAACCGAGTTATTTCTCTTGTTGT 58.711 36.000 0.00 0.00 31.93 3.32
107 108 6.787085 AGAACCGAGTTATTTCTCTTGTTG 57.213 37.500 0.00 0.00 31.93 3.33
108 109 7.639945 CAAAGAACCGAGTTATTTCTCTTGTT 58.360 34.615 6.46 0.00 35.24 2.83
109 110 6.293462 GCAAAGAACCGAGTTATTTCTCTTGT 60.293 38.462 6.46 0.00 35.24 3.16
110 111 6.080406 GCAAAGAACCGAGTTATTTCTCTTG 58.920 40.000 6.46 0.00 35.24 3.02
111 112 5.763204 TGCAAAGAACCGAGTTATTTCTCTT 59.237 36.000 6.46 0.00 35.24 2.85
112 113 5.305585 TGCAAAGAACCGAGTTATTTCTCT 58.694 37.500 6.46 0.00 35.24 3.10
113 114 5.607119 TGCAAAGAACCGAGTTATTTCTC 57.393 39.130 6.46 3.95 35.24 2.87
114 115 6.349363 GGAATGCAAAGAACCGAGTTATTTCT 60.349 38.462 0.00 0.00 35.24 2.52
115 116 5.800438 GGAATGCAAAGAACCGAGTTATTTC 59.200 40.000 0.00 4.23 35.24 2.17
116 117 5.619086 CGGAATGCAAAGAACCGAGTTATTT 60.619 40.000 12.55 4.29 45.31 1.40
117 118 4.142687 CGGAATGCAAAGAACCGAGTTATT 60.143 41.667 12.55 0.00 45.31 1.40
118 119 3.374058 CGGAATGCAAAGAACCGAGTTAT 59.626 43.478 12.55 0.00 45.31 1.89
119 120 2.739913 CGGAATGCAAAGAACCGAGTTA 59.260 45.455 12.55 0.00 45.31 2.24
120 121 1.535462 CGGAATGCAAAGAACCGAGTT 59.465 47.619 12.55 0.00 45.31 3.01
121 122 1.156736 CGGAATGCAAAGAACCGAGT 58.843 50.000 12.55 0.00 45.31 4.18
122 123 1.438651 TCGGAATGCAAAGAACCGAG 58.561 50.000 15.21 0.00 45.87 4.63
124 125 2.161410 TCATTCGGAATGCAAAGAACCG 59.839 45.455 22.80 11.94 44.09 4.44
125 126 3.440173 TCTCATTCGGAATGCAAAGAACC 59.560 43.478 22.80 0.00 38.77 3.62
126 127 4.685169 TCTCATTCGGAATGCAAAGAAC 57.315 40.909 22.80 0.00 38.77 3.01
127 128 5.902613 ATTCTCATTCGGAATGCAAAGAA 57.097 34.783 23.96 23.96 38.77 2.52
128 129 6.183360 GGTTATTCTCATTCGGAATGCAAAGA 60.183 38.462 22.80 17.76 38.77 2.52
129 130 5.973565 GGTTATTCTCATTCGGAATGCAAAG 59.026 40.000 22.80 16.03 38.77 2.77
130 131 5.163561 GGGTTATTCTCATTCGGAATGCAAA 60.164 40.000 22.80 18.54 38.77 3.68
131 132 4.338118 GGGTTATTCTCATTCGGAATGCAA 59.662 41.667 22.80 17.78 38.77 4.08
132 133 3.882888 GGGTTATTCTCATTCGGAATGCA 59.117 43.478 22.80 11.02 38.77 3.96
133 134 3.882888 TGGGTTATTCTCATTCGGAATGC 59.117 43.478 22.80 9.18 38.77 3.56
134 135 4.275936 GGTGGGTTATTCTCATTCGGAATG 59.724 45.833 21.85 21.85 40.28 2.67
135 136 4.461198 GGTGGGTTATTCTCATTCGGAAT 58.539 43.478 0.00 0.00 37.24 3.01
136 137 3.371166 GGGTGGGTTATTCTCATTCGGAA 60.371 47.826 0.00 0.00 0.00 4.30
137 138 2.171870 GGGTGGGTTATTCTCATTCGGA 59.828 50.000 0.00 0.00 0.00 4.55
138 139 2.572290 GGGTGGGTTATTCTCATTCGG 58.428 52.381 0.00 0.00 0.00 4.30
139 140 2.572290 GGGGTGGGTTATTCTCATTCG 58.428 52.381 0.00 0.00 0.00 3.34
140 141 2.171870 TCGGGGTGGGTTATTCTCATTC 59.828 50.000 0.00 0.00 0.00 2.67
141 142 2.092592 GTCGGGGTGGGTTATTCTCATT 60.093 50.000 0.00 0.00 0.00 2.57
142 143 1.489230 GTCGGGGTGGGTTATTCTCAT 59.511 52.381 0.00 0.00 0.00 2.90
143 144 0.906775 GTCGGGGTGGGTTATTCTCA 59.093 55.000 0.00 0.00 0.00 3.27
144 145 0.906775 TGTCGGGGTGGGTTATTCTC 59.093 55.000 0.00 0.00 0.00 2.87
145 146 1.364269 TTGTCGGGGTGGGTTATTCT 58.636 50.000 0.00 0.00 0.00 2.40
146 147 2.203470 TTTGTCGGGGTGGGTTATTC 57.797 50.000 0.00 0.00 0.00 1.75
147 148 2.041891 TCATTTGTCGGGGTGGGTTATT 59.958 45.455 0.00 0.00 0.00 1.40
148 149 1.636519 TCATTTGTCGGGGTGGGTTAT 59.363 47.619 0.00 0.00 0.00 1.89
149 150 1.003812 CTCATTTGTCGGGGTGGGTTA 59.996 52.381 0.00 0.00 0.00 2.85
150 151 0.251165 CTCATTTGTCGGGGTGGGTT 60.251 55.000 0.00 0.00 0.00 4.11
151 152 1.378762 CTCATTTGTCGGGGTGGGT 59.621 57.895 0.00 0.00 0.00 4.51
152 153 2.046285 GCTCATTTGTCGGGGTGGG 61.046 63.158 0.00 0.00 0.00 4.61
153 154 2.398554 CGCTCATTTGTCGGGGTGG 61.399 63.158 0.00 0.00 0.00 4.61
154 155 2.398554 CCGCTCATTTGTCGGGGTG 61.399 63.158 0.00 0.00 39.52 4.61
155 156 2.046314 CCGCTCATTTGTCGGGGT 60.046 61.111 0.00 0.00 39.52 4.95
156 157 2.046314 ACCGCTCATTTGTCGGGG 60.046 61.111 14.70 9.95 46.78 5.73
157 158 0.953471 TTGACCGCTCATTTGTCGGG 60.953 55.000 14.70 2.09 46.78 5.14
159 160 0.179215 GCTTGACCGCTCATTTGTCG 60.179 55.000 0.00 0.00 0.00 4.35
160 161 0.169009 GGCTTGACCGCTCATTTGTC 59.831 55.000 0.00 0.00 0.00 3.18
161 162 2.257353 GGCTTGACCGCTCATTTGT 58.743 52.632 0.00 0.00 0.00 2.83
171 172 1.200020 CTTTTGTCATCCGGCTTGACC 59.800 52.381 25.38 13.65 42.25 4.02
172 173 1.880027 ACTTTTGTCATCCGGCTTGAC 59.120 47.619 23.09 23.09 43.04 3.18
173 174 1.879380 CACTTTTGTCATCCGGCTTGA 59.121 47.619 0.00 0.00 0.00 3.02
174 175 1.608590 ACACTTTTGTCATCCGGCTTG 59.391 47.619 0.00 0.00 0.00 4.01
175 176 1.608590 CACACTTTTGTCATCCGGCTT 59.391 47.619 0.00 0.00 31.66 4.35
176 177 1.202758 TCACACTTTTGTCATCCGGCT 60.203 47.619 0.00 0.00 31.66 5.52
177 178 1.197721 CTCACACTTTTGTCATCCGGC 59.802 52.381 0.00 0.00 31.66 6.13
178 179 2.494059 ACTCACACTTTTGTCATCCGG 58.506 47.619 0.00 0.00 31.66 5.14
179 180 4.988540 TCTTACTCACACTTTTGTCATCCG 59.011 41.667 0.00 0.00 31.66 4.18
180 181 6.861065 TTCTTACTCACACTTTTGTCATCC 57.139 37.500 0.00 0.00 31.66 3.51
181 182 8.142994 TCTTTCTTACTCACACTTTTGTCATC 57.857 34.615 0.00 0.00 31.66 2.92
182 183 8.682936 ATCTTTCTTACTCACACTTTTGTCAT 57.317 30.769 0.00 0.00 31.66 3.06
183 184 8.506168 AATCTTTCTTACTCACACTTTTGTCA 57.494 30.769 0.00 0.00 31.66 3.58
204 205 9.503427 CGTGAAAGTTTTTGAGAAGTTTAATCT 57.497 29.630 0.00 0.00 33.52 2.40
205 206 9.498307 TCGTGAAAGTTTTTGAGAAGTTTAATC 57.502 29.630 0.00 0.00 33.52 1.75
206 207 9.849166 TTCGTGAAAGTTTTTGAGAAGTTTAAT 57.151 25.926 0.00 0.00 33.52 1.40
207 208 9.849166 ATTCGTGAAAGTTTTTGAGAAGTTTAA 57.151 25.926 0.00 0.00 33.52 1.52
208 209 9.498307 GATTCGTGAAAGTTTTTGAGAAGTTTA 57.502 29.630 0.00 0.00 33.52 2.01
209 210 8.026607 TGATTCGTGAAAGTTTTTGAGAAGTTT 58.973 29.630 0.00 0.00 35.46 2.66
210 211 7.535139 TGATTCGTGAAAGTTTTTGAGAAGTT 58.465 30.769 0.00 0.00 0.00 2.66
211 212 7.083875 TGATTCGTGAAAGTTTTTGAGAAGT 57.916 32.000 0.00 0.00 0.00 3.01
212 213 7.969387 TTGATTCGTGAAAGTTTTTGAGAAG 57.031 32.000 0.00 0.00 0.00 2.85
213 214 8.026607 AGTTTGATTCGTGAAAGTTTTTGAGAA 58.973 29.630 0.00 0.00 0.00 2.87
214 215 7.535139 AGTTTGATTCGTGAAAGTTTTTGAGA 58.465 30.769 0.00 0.00 0.00 3.27
215 216 7.740519 AGTTTGATTCGTGAAAGTTTTTGAG 57.259 32.000 0.00 0.00 0.00 3.02
233 234 7.114247 GCACAATTGCTACGAATAAAAGTTTGA 59.886 33.333 5.05 0.00 46.17 2.69
234 235 7.219922 GCACAATTGCTACGAATAAAAGTTTG 58.780 34.615 5.05 0.00 46.17 2.93
294 295 9.927668 CACTTGGTTTCATTTATGGAAGTTTAT 57.072 29.630 0.00 0.00 0.00 1.40
295 296 8.919145 ACACTTGGTTTCATTTATGGAAGTTTA 58.081 29.630 0.00 0.00 0.00 2.01
296 297 7.791029 ACACTTGGTTTCATTTATGGAAGTTT 58.209 30.769 0.00 0.00 0.00 2.66
297 298 7.360113 ACACTTGGTTTCATTTATGGAAGTT 57.640 32.000 0.00 0.00 0.00 2.66
298 299 6.015434 GGACACTTGGTTTCATTTATGGAAGT 60.015 38.462 0.00 0.00 0.00 3.01
299 300 6.015519 TGGACACTTGGTTTCATTTATGGAAG 60.016 38.462 0.00 0.00 0.00 3.46
300 301 5.835819 TGGACACTTGGTTTCATTTATGGAA 59.164 36.000 0.00 0.00 0.00 3.53
301 302 5.389520 TGGACACTTGGTTTCATTTATGGA 58.610 37.500 0.00 0.00 0.00 3.41
302 303 5.720371 TGGACACTTGGTTTCATTTATGG 57.280 39.130 0.00 0.00 0.00 2.74
303 304 5.629020 CGTTGGACACTTGGTTTCATTTATG 59.371 40.000 0.00 0.00 0.00 1.90
304 305 5.533154 TCGTTGGACACTTGGTTTCATTTAT 59.467 36.000 0.00 0.00 0.00 1.40
305 306 4.882427 TCGTTGGACACTTGGTTTCATTTA 59.118 37.500 0.00 0.00 0.00 1.40
306 307 3.697045 TCGTTGGACACTTGGTTTCATTT 59.303 39.130 0.00 0.00 0.00 2.32
307 308 3.066203 GTCGTTGGACACTTGGTTTCATT 59.934 43.478 0.00 0.00 42.91 2.57
308 309 2.616842 GTCGTTGGACACTTGGTTTCAT 59.383 45.455 0.00 0.00 42.91 2.57
309 310 2.011222 GTCGTTGGACACTTGGTTTCA 58.989 47.619 0.00 0.00 42.91 2.69
310 311 1.004292 CGTCGTTGGACACTTGGTTTC 60.004 52.381 0.00 0.00 43.61 2.78
311 312 1.011333 CGTCGTTGGACACTTGGTTT 58.989 50.000 0.00 0.00 43.61 3.27
312 313 0.176219 TCGTCGTTGGACACTTGGTT 59.824 50.000 0.00 0.00 43.61 3.67
313 314 0.249322 CTCGTCGTTGGACACTTGGT 60.249 55.000 0.00 0.00 43.61 3.67
314 315 0.031585 TCTCGTCGTTGGACACTTGG 59.968 55.000 0.00 0.00 43.61 3.61
315 316 1.001706 TCTCTCGTCGTTGGACACTTG 60.002 52.381 0.00 0.00 43.61 3.16
330 331 2.287427 TGTCGACCGAGTTGTTTCTCTC 60.287 50.000 14.12 0.00 32.83 3.20
347 348 3.887621 TCTACTCCCTCCATTTTGTCG 57.112 47.619 0.00 0.00 0.00 4.35
348 349 7.176690 TGAAAAATCTACTCCCTCCATTTTGTC 59.823 37.037 0.00 0.00 29.27 3.18
349 350 7.010160 TGAAAAATCTACTCCCTCCATTTTGT 58.990 34.615 0.00 0.00 29.27 2.83
350 351 7.466746 TGAAAAATCTACTCCCTCCATTTTG 57.533 36.000 0.00 0.00 29.27 2.44
352 353 6.097412 GCATGAAAAATCTACTCCCTCCATTT 59.903 38.462 0.00 0.00 0.00 2.32
353 354 5.595952 GCATGAAAAATCTACTCCCTCCATT 59.404 40.000 0.00 0.00 0.00 3.16
354 355 5.136105 GCATGAAAAATCTACTCCCTCCAT 58.864 41.667 0.00 0.00 0.00 3.41
355 356 4.018506 TGCATGAAAAATCTACTCCCTCCA 60.019 41.667 0.00 0.00 0.00 3.86
356 357 4.526970 TGCATGAAAAATCTACTCCCTCC 58.473 43.478 0.00 0.00 0.00 4.30
357 358 5.506982 GCATGCATGAAAAATCTACTCCCTC 60.507 44.000 30.64 2.07 0.00 4.30
358 359 4.340381 GCATGCATGAAAAATCTACTCCCT 59.660 41.667 30.64 0.00 0.00 4.20
361 362 7.488187 TCTAGCATGCATGAAAAATCTACTC 57.512 36.000 30.64 7.61 0.00 2.59
362 363 8.461249 AATCTAGCATGCATGAAAAATCTACT 57.539 30.769 30.64 15.63 0.00 2.57
364 365 9.128404 AGAAATCTAGCATGCATGAAAAATCTA 57.872 29.630 30.64 17.88 0.00 1.98
365 366 8.008513 AGAAATCTAGCATGCATGAAAAATCT 57.991 30.769 30.64 17.72 0.00 2.40
366 367 7.381678 GGAGAAATCTAGCATGCATGAAAAATC 59.618 37.037 30.64 16.68 0.00 2.17
368 369 6.406177 GGGAGAAATCTAGCATGCATGAAAAA 60.406 38.462 30.64 12.33 0.00 1.94
369 370 5.068198 GGGAGAAATCTAGCATGCATGAAAA 59.932 40.000 30.64 12.79 0.00 2.29
370 371 4.581824 GGGAGAAATCTAGCATGCATGAAA 59.418 41.667 30.64 15.31 0.00 2.69
372 373 3.497405 GGGGAGAAATCTAGCATGCATGA 60.497 47.826 30.64 17.17 0.00 3.07
373 374 2.818432 GGGGAGAAATCTAGCATGCATG 59.182 50.000 22.70 22.70 0.00 4.06
374 375 2.224967 GGGGGAGAAATCTAGCATGCAT 60.225 50.000 21.98 7.68 0.00 3.96
375 376 1.143684 GGGGGAGAAATCTAGCATGCA 59.856 52.381 21.98 5.01 0.00 3.96
377 378 3.872459 AAGGGGGAGAAATCTAGCATG 57.128 47.619 0.00 0.00 0.00 4.06
378 379 4.888626 AAAAGGGGGAGAAATCTAGCAT 57.111 40.909 0.00 0.00 0.00 3.79
379 380 4.292306 AGAAAAAGGGGGAGAAATCTAGCA 59.708 41.667 0.00 0.00 0.00 3.49
380 381 4.861196 AGAAAAAGGGGGAGAAATCTAGC 58.139 43.478 0.00 0.00 0.00 3.42
381 382 6.067217 TGAGAAAAAGGGGGAGAAATCTAG 57.933 41.667 0.00 0.00 0.00 2.43
382 383 6.274672 TCTTGAGAAAAAGGGGGAGAAATCTA 59.725 38.462 0.00 0.00 0.00 1.98
383 384 5.075067 TCTTGAGAAAAAGGGGGAGAAATCT 59.925 40.000 0.00 0.00 0.00 2.40
384 385 5.184096 GTCTTGAGAAAAAGGGGGAGAAATC 59.816 44.000 0.00 0.00 0.00 2.17
385 386 5.080337 GTCTTGAGAAAAAGGGGGAGAAAT 58.920 41.667 0.00 0.00 0.00 2.17
386 387 4.470602 GTCTTGAGAAAAAGGGGGAGAAA 58.529 43.478 0.00 0.00 0.00 2.52
387 388 3.496160 CGTCTTGAGAAAAAGGGGGAGAA 60.496 47.826 0.00 0.00 0.00 2.87
388 389 2.038557 CGTCTTGAGAAAAAGGGGGAGA 59.961 50.000 0.00 0.00 0.00 3.71
389 390 2.038557 TCGTCTTGAGAAAAAGGGGGAG 59.961 50.000 0.00 0.00 0.00 4.30
390 391 2.051692 TCGTCTTGAGAAAAAGGGGGA 58.948 47.619 0.00 0.00 0.00 4.81
391 392 2.561478 TCGTCTTGAGAAAAAGGGGG 57.439 50.000 0.00 0.00 0.00 5.40
392 393 2.162408 GCATCGTCTTGAGAAAAAGGGG 59.838 50.000 0.00 0.00 0.00 4.79
393 394 2.813754 TGCATCGTCTTGAGAAAAAGGG 59.186 45.455 0.00 0.00 0.00 3.95
394 395 4.409570 CATGCATCGTCTTGAGAAAAAGG 58.590 43.478 0.00 0.00 0.00 3.11
395 396 3.850273 GCATGCATCGTCTTGAGAAAAAG 59.150 43.478 14.21 0.00 0.00 2.27
396 397 3.503363 AGCATGCATCGTCTTGAGAAAAA 59.497 39.130 21.98 0.00 0.00 1.94
397 398 3.076621 AGCATGCATCGTCTTGAGAAAA 58.923 40.909 21.98 0.00 0.00 2.29
398 399 2.703416 AGCATGCATCGTCTTGAGAAA 58.297 42.857 21.98 0.00 0.00 2.52
399 400 2.391616 AGCATGCATCGTCTTGAGAA 57.608 45.000 21.98 0.00 0.00 2.87
400 401 2.689983 TCTAGCATGCATCGTCTTGAGA 59.310 45.455 21.98 5.01 0.00 3.27
401 402 3.089573 TCTAGCATGCATCGTCTTGAG 57.910 47.619 21.98 2.73 0.00 3.02
402 403 3.740631 ATCTAGCATGCATCGTCTTGA 57.259 42.857 21.98 4.69 0.00 3.02
403 404 4.808077 AAATCTAGCATGCATCGTCTTG 57.192 40.909 21.98 0.00 0.00 3.02
404 405 5.824904 AAAAATCTAGCATGCATCGTCTT 57.175 34.783 21.98 3.32 0.00 3.01
405 406 6.763135 TCTTAAAAATCTAGCATGCATCGTCT 59.237 34.615 21.98 0.00 0.00 4.18
406 407 6.948353 TCTTAAAAATCTAGCATGCATCGTC 58.052 36.000 21.98 0.00 0.00 4.20
407 408 6.925610 TCTTAAAAATCTAGCATGCATCGT 57.074 33.333 21.98 0.61 0.00 3.73
408 409 6.854892 CCTTCTTAAAAATCTAGCATGCATCG 59.145 38.462 21.98 7.52 0.00 3.84
409 410 7.144000 CCCTTCTTAAAAATCTAGCATGCATC 58.856 38.462 21.98 0.00 0.00 3.91
410 411 6.041296 CCCCTTCTTAAAAATCTAGCATGCAT 59.959 38.462 21.98 7.68 0.00 3.96
411 412 5.360714 CCCCTTCTTAAAAATCTAGCATGCA 59.639 40.000 21.98 5.01 0.00 3.96
412 413 5.594317 TCCCCTTCTTAAAAATCTAGCATGC 59.406 40.000 10.51 10.51 0.00 4.06
413 414 7.056635 TCTCCCCTTCTTAAAAATCTAGCATG 58.943 38.462 0.00 0.00 0.00 4.06
414 415 7.213178 TCTCCCCTTCTTAAAAATCTAGCAT 57.787 36.000 0.00 0.00 0.00 3.79
415 416 6.636454 TCTCCCCTTCTTAAAAATCTAGCA 57.364 37.500 0.00 0.00 0.00 3.49
416 417 9.443323 GATATCTCCCCTTCTTAAAAATCTAGC 57.557 37.037 0.00 0.00 0.00 3.42
419 420 8.781951 TGTGATATCTCCCCTTCTTAAAAATCT 58.218 33.333 3.98 0.00 0.00 2.40
420 421 8.980481 TGTGATATCTCCCCTTCTTAAAAATC 57.020 34.615 3.98 0.00 0.00 2.17
421 422 9.359653 CATGTGATATCTCCCCTTCTTAAAAAT 57.640 33.333 3.98 0.00 0.00 1.82
422 423 8.556589 TCATGTGATATCTCCCCTTCTTAAAAA 58.443 33.333 3.98 0.00 0.00 1.94
423 424 8.101309 TCATGTGATATCTCCCCTTCTTAAAA 57.899 34.615 3.98 0.00 0.00 1.52
424 425 7.690301 GCTCATGTGATATCTCCCCTTCTTAAA 60.690 40.741 3.98 0.00 0.00 1.52
425 426 6.239714 GCTCATGTGATATCTCCCCTTCTTAA 60.240 42.308 3.98 0.00 0.00 1.85
426 427 5.247110 GCTCATGTGATATCTCCCCTTCTTA 59.753 44.000 3.98 0.00 0.00 2.10
427 428 4.041444 GCTCATGTGATATCTCCCCTTCTT 59.959 45.833 3.98 0.00 0.00 2.52
428 429 3.582208 GCTCATGTGATATCTCCCCTTCT 59.418 47.826 3.98 0.00 0.00 2.85
429 430 3.616076 CGCTCATGTGATATCTCCCCTTC 60.616 52.174 3.98 0.00 0.00 3.46
430 431 2.301296 CGCTCATGTGATATCTCCCCTT 59.699 50.000 3.98 0.00 0.00 3.95
431 432 1.898472 CGCTCATGTGATATCTCCCCT 59.102 52.381 3.98 0.00 0.00 4.79
432 433 1.895798 TCGCTCATGTGATATCTCCCC 59.104 52.381 3.98 0.00 0.00 4.81
433 434 2.094286 CCTCGCTCATGTGATATCTCCC 60.094 54.545 3.98 0.00 31.73 4.30
434 435 2.822561 TCCTCGCTCATGTGATATCTCC 59.177 50.000 3.98 0.00 31.73 3.71
435 436 3.505680 AGTCCTCGCTCATGTGATATCTC 59.494 47.826 3.98 0.63 31.73 2.75
436 437 3.495331 AGTCCTCGCTCATGTGATATCT 58.505 45.455 3.98 0.00 31.73 1.98
437 438 3.366883 GGAGTCCTCGCTCATGTGATATC 60.367 52.174 0.41 0.00 37.24 1.63
438 439 2.560542 GGAGTCCTCGCTCATGTGATAT 59.439 50.000 0.41 0.00 37.24 1.63
439 440 1.957177 GGAGTCCTCGCTCATGTGATA 59.043 52.381 0.41 0.00 37.24 2.15
440 441 0.749649 GGAGTCCTCGCTCATGTGAT 59.250 55.000 0.41 0.00 37.24 3.06
441 442 0.611896 TGGAGTCCTCGCTCATGTGA 60.612 55.000 11.33 0.00 37.24 3.58
442 443 0.463204 ATGGAGTCCTCGCTCATGTG 59.537 55.000 11.33 0.00 37.24 3.21
443 444 0.749649 GATGGAGTCCTCGCTCATGT 59.250 55.000 11.33 0.00 37.24 3.21
444 445 0.318529 CGATGGAGTCCTCGCTCATG 60.319 60.000 11.33 0.00 37.24 3.07
445 446 0.466372 TCGATGGAGTCCTCGCTCAT 60.466 55.000 19.94 2.23 37.24 2.90
446 447 1.077716 TCGATGGAGTCCTCGCTCA 60.078 57.895 19.94 6.52 37.24 4.26
447 448 1.357334 GTCGATGGAGTCCTCGCTC 59.643 63.158 19.94 13.84 34.94 5.03
448 449 0.965866 TTGTCGATGGAGTCCTCGCT 60.966 55.000 19.94 1.06 34.94 4.93
449 450 0.108804 TTTGTCGATGGAGTCCTCGC 60.109 55.000 19.94 16.27 34.94 5.03
450 451 2.094700 TCTTTTGTCGATGGAGTCCTCG 60.095 50.000 19.13 19.13 36.25 4.63
451 452 3.594603 TCTTTTGTCGATGGAGTCCTC 57.405 47.619 11.33 4.73 0.00 3.71
452 453 4.065789 GTTTCTTTTGTCGATGGAGTCCT 58.934 43.478 11.33 0.00 0.00 3.85
453 454 3.188667 GGTTTCTTTTGTCGATGGAGTCC 59.811 47.826 0.73 0.73 0.00 3.85
454 455 3.188667 GGGTTTCTTTTGTCGATGGAGTC 59.811 47.826 0.00 0.00 0.00 3.36
455 456 3.146847 GGGTTTCTTTTGTCGATGGAGT 58.853 45.455 0.00 0.00 0.00 3.85
456 457 3.146066 TGGGTTTCTTTTGTCGATGGAG 58.854 45.455 0.00 0.00 0.00 3.86
457 458 3.146066 CTGGGTTTCTTTTGTCGATGGA 58.854 45.455 0.00 0.00 0.00 3.41
458 459 2.351738 GCTGGGTTTCTTTTGTCGATGG 60.352 50.000 0.00 0.00 0.00 3.51
459 460 2.351738 GGCTGGGTTTCTTTTGTCGATG 60.352 50.000 0.00 0.00 0.00 3.84
460 461 1.886542 GGCTGGGTTTCTTTTGTCGAT 59.113 47.619 0.00 0.00 0.00 3.59
461 462 1.314730 GGCTGGGTTTCTTTTGTCGA 58.685 50.000 0.00 0.00 0.00 4.20
462 463 1.028905 TGGCTGGGTTTCTTTTGTCG 58.971 50.000 0.00 0.00 0.00 4.35
463 464 2.798145 CGTTGGCTGGGTTTCTTTTGTC 60.798 50.000 0.00 0.00 0.00 3.18
464 465 1.136110 CGTTGGCTGGGTTTCTTTTGT 59.864 47.619 0.00 0.00 0.00 2.83
465 466 1.851658 CGTTGGCTGGGTTTCTTTTG 58.148 50.000 0.00 0.00 0.00 2.44
466 467 0.104120 GCGTTGGCTGGGTTTCTTTT 59.896 50.000 0.00 0.00 35.83 2.27
467 468 1.040339 TGCGTTGGCTGGGTTTCTTT 61.040 50.000 0.00 0.00 40.82 2.52
468 469 1.454847 TGCGTTGGCTGGGTTTCTT 60.455 52.632 0.00 0.00 40.82 2.52
469 470 2.193536 GTGCGTTGGCTGGGTTTCT 61.194 57.895 0.00 0.00 40.82 2.52
470 471 2.335011 GTGCGTTGGCTGGGTTTC 59.665 61.111 0.00 0.00 40.82 2.78
471 472 3.223589 GGTGCGTTGGCTGGGTTT 61.224 61.111 0.00 0.00 40.82 3.27
475 476 3.751246 CATGGGTGCGTTGGCTGG 61.751 66.667 0.00 0.00 40.82 4.85
476 477 4.424566 GCATGGGTGCGTTGGCTG 62.425 66.667 0.00 0.00 42.28 4.85
485 486 1.033746 GGATGAGGTGTGCATGGGTG 61.034 60.000 0.00 0.00 0.00 4.61
486 487 1.304282 GGATGAGGTGTGCATGGGT 59.696 57.895 0.00 0.00 0.00 4.51
487 488 1.820906 CGGATGAGGTGTGCATGGG 60.821 63.158 0.00 0.00 0.00 4.00
488 489 1.820906 CCGGATGAGGTGTGCATGG 60.821 63.158 0.00 0.00 0.00 3.66
489 490 2.475466 GCCGGATGAGGTGTGCATG 61.475 63.158 5.05 0.00 0.00 4.06
490 491 2.124570 GCCGGATGAGGTGTGCAT 60.125 61.111 5.05 0.00 0.00 3.96
491 492 4.408821 GGCCGGATGAGGTGTGCA 62.409 66.667 5.05 0.00 0.00 4.57
493 494 4.838152 CCGGCCGGATGAGGTGTG 62.838 72.222 41.82 7.45 37.50 3.82
504 505 3.254014 CTTTCTTGCACACCGGCCG 62.254 63.158 21.04 21.04 0.00 6.13
505 506 1.244019 ATCTTTCTTGCACACCGGCC 61.244 55.000 0.00 0.00 0.00 6.13
506 507 0.598065 AATCTTTCTTGCACACCGGC 59.402 50.000 0.00 0.00 0.00 6.13
507 508 1.200020 GGAATCTTTCTTGCACACCGG 59.800 52.381 0.00 0.00 0.00 5.28
508 509 1.879380 TGGAATCTTTCTTGCACACCG 59.121 47.619 0.00 0.00 0.00 4.94
509 510 3.288809 GTGGAATCTTTCTTGCACACC 57.711 47.619 3.95 0.00 44.20 4.16
512 513 3.304928 CCAGTGTGGAATCTTTCTTGCAC 60.305 47.826 2.04 2.04 44.79 4.57
513 514 2.886523 CCAGTGTGGAATCTTTCTTGCA 59.113 45.455 0.00 0.00 40.96 4.08
514 515 2.352127 GCCAGTGTGGAATCTTTCTTGC 60.352 50.000 0.00 0.00 40.96 4.01
515 516 2.886523 TGCCAGTGTGGAATCTTTCTTG 59.113 45.455 0.00 0.00 40.96 3.02
516 517 2.887152 GTGCCAGTGTGGAATCTTTCTT 59.113 45.455 0.00 0.00 40.96 2.52
519 520 2.624838 CAAGTGCCAGTGTGGAATCTTT 59.375 45.455 0.00 0.00 40.96 2.52
531 532 1.919956 GCTAGCTGTGCAAGTGCCAG 61.920 60.000 7.70 14.00 41.18 4.85
547 548 9.575868 AAAATCTAGTAGCATGTAGAGTAGCTA 57.424 33.333 0.00 0.00 38.47 3.32
548 549 8.472007 AAAATCTAGTAGCATGTAGAGTAGCT 57.528 34.615 0.00 0.00 40.92 3.32
549 550 9.187455 GAAAAATCTAGTAGCATGTAGAGTAGC 57.813 37.037 0.00 0.00 0.00 3.58
552 553 9.539825 CATGAAAAATCTAGTAGCATGTAGAGT 57.460 33.333 0.00 0.00 0.00 3.24
553 554 8.494347 GCATGAAAAATCTAGTAGCATGTAGAG 58.506 37.037 0.00 0.00 35.38 2.43
554 555 7.986889 TGCATGAAAAATCTAGTAGCATGTAGA 59.013 33.333 0.00 0.00 35.38 2.59
556 557 7.254421 CGTGCATGAAAAATCTAGTAGCATGTA 60.254 37.037 0.00 7.20 35.38 2.29
557 558 6.457392 CGTGCATGAAAAATCTAGTAGCATGT 60.457 38.462 0.00 0.00 35.38 3.21
558 559 5.905733 CGTGCATGAAAAATCTAGTAGCATG 59.094 40.000 0.00 0.00 35.87 4.06
559 560 5.504665 GCGTGCATGAAAAATCTAGTAGCAT 60.505 40.000 10.93 0.00 0.00 3.79
560 561 4.201812 GCGTGCATGAAAAATCTAGTAGCA 60.202 41.667 10.93 0.00 0.00 3.49
561 562 4.274865 GCGTGCATGAAAAATCTAGTAGC 58.725 43.478 10.93 0.00 0.00 3.58
562 563 4.332543 TGGCGTGCATGAAAAATCTAGTAG 59.667 41.667 10.93 0.00 0.00 2.57
563 564 4.257731 TGGCGTGCATGAAAAATCTAGTA 58.742 39.130 10.93 0.00 0.00 1.82
564 565 3.081061 TGGCGTGCATGAAAAATCTAGT 58.919 40.909 10.93 0.00 0.00 2.57
593 594 2.562738 TCCAGCGTTCATTCTCTCAAGA 59.437 45.455 0.00 0.00 0.00 3.02
594 595 2.964740 TCCAGCGTTCATTCTCTCAAG 58.035 47.619 0.00 0.00 0.00 3.02
595 596 3.616956 ATCCAGCGTTCATTCTCTCAA 57.383 42.857 0.00 0.00 0.00 3.02
596 597 3.055891 TGAATCCAGCGTTCATTCTCTCA 60.056 43.478 3.16 0.00 31.07 3.27
597 598 3.525537 TGAATCCAGCGTTCATTCTCTC 58.474 45.455 3.16 0.00 31.07 3.20
598 599 3.616956 TGAATCCAGCGTTCATTCTCT 57.383 42.857 3.16 0.00 31.07 3.10
599 600 3.935203 TCTTGAATCCAGCGTTCATTCTC 59.065 43.478 3.16 0.00 35.68 2.87
600 601 3.937706 CTCTTGAATCCAGCGTTCATTCT 59.062 43.478 3.16 0.00 35.68 2.40
601 602 3.686726 ACTCTTGAATCCAGCGTTCATTC 59.313 43.478 0.00 0.00 35.68 2.67
602 603 3.679389 ACTCTTGAATCCAGCGTTCATT 58.321 40.909 0.00 0.00 35.68 2.57
603 604 3.265791 GACTCTTGAATCCAGCGTTCAT 58.734 45.455 0.00 0.00 35.68 2.57
604 605 2.688507 GACTCTTGAATCCAGCGTTCA 58.311 47.619 0.00 0.00 34.01 3.18
605 606 1.656095 CGACTCTTGAATCCAGCGTTC 59.344 52.381 0.00 0.00 0.00 3.95
606 607 1.673033 CCGACTCTTGAATCCAGCGTT 60.673 52.381 0.00 0.00 0.00 4.84
607 608 0.108615 CCGACTCTTGAATCCAGCGT 60.109 55.000 0.00 0.00 0.00 5.07
608 609 0.173481 TCCGACTCTTGAATCCAGCG 59.827 55.000 0.00 0.00 0.00 5.18
609 610 1.478510 TCTCCGACTCTTGAATCCAGC 59.521 52.381 0.00 0.00 0.00 4.85
610 611 2.481104 GCTCTCCGACTCTTGAATCCAG 60.481 54.545 0.00 0.00 0.00 3.86
611 612 1.478510 GCTCTCCGACTCTTGAATCCA 59.521 52.381 0.00 0.00 0.00 3.41
612 613 1.478510 TGCTCTCCGACTCTTGAATCC 59.521 52.381 0.00 0.00 0.00 3.01
613 614 2.165437 ACTGCTCTCCGACTCTTGAATC 59.835 50.000 0.00 0.00 0.00 2.52
614 615 2.094286 CACTGCTCTCCGACTCTTGAAT 60.094 50.000 0.00 0.00 0.00 2.57
615 616 1.270826 CACTGCTCTCCGACTCTTGAA 59.729 52.381 0.00 0.00 0.00 2.69
616 617 0.884514 CACTGCTCTCCGACTCTTGA 59.115 55.000 0.00 0.00 0.00 3.02
617 618 0.884514 TCACTGCTCTCCGACTCTTG 59.115 55.000 0.00 0.00 0.00 3.02
623 624 3.443925 CCGCTCACTGCTCTCCGA 61.444 66.667 0.00 0.00 40.11 4.55
648 689 1.709760 CTGTGCGCAACCGTATCTG 59.290 57.895 14.00 0.00 36.67 2.90
672 713 3.411351 CCAGTCCCGTTTGCGTCG 61.411 66.667 0.00 0.00 36.15 5.12
707 748 2.262915 GTGGTGTCAGCGAGGAGG 59.737 66.667 0.00 0.00 0.00 4.30
709 750 2.131067 TGTGTGGTGTCAGCGAGGA 61.131 57.895 0.00 0.00 0.00 3.71
710 751 1.956170 GTGTGTGGTGTCAGCGAGG 60.956 63.158 0.00 0.00 0.00 4.63
720 761 4.602259 CCGGCGTGAGTGTGTGGT 62.602 66.667 6.01 0.00 0.00 4.16
769 824 1.692749 GCATGTACAGGGAGGGGGA 60.693 63.158 9.91 0.00 0.00 4.81
770 825 1.987807 CTGCATGTACAGGGAGGGGG 61.988 65.000 19.87 0.00 33.85 5.40
773 828 0.463295 CAGCTGCATGTACAGGGAGG 60.463 60.000 26.83 10.46 38.16 4.30
774 829 1.094073 GCAGCTGCATGTACAGGGAG 61.094 60.000 33.36 22.74 41.59 4.30
775 830 1.078214 GCAGCTGCATGTACAGGGA 60.078 57.895 33.36 5.49 41.59 4.20
776 831 2.117156 GGCAGCTGCATGTACAGGG 61.117 63.158 37.63 1.13 44.36 4.45
777 832 2.466982 CGGCAGCTGCATGTACAGG 61.467 63.158 37.63 13.29 44.36 4.00
778 833 3.095911 CGGCAGCTGCATGTACAG 58.904 61.111 37.63 16.31 44.36 2.74
779 834 3.126879 GCGGCAGCTGCATGTACA 61.127 61.111 37.63 0.00 44.36 2.90
789 844 3.787001 AGGGGTAGAAGCGGCAGC 61.787 66.667 0.00 0.00 45.58 5.25
801 856 0.195096 TGTTAGGGTTCTCCAGGGGT 59.805 55.000 0.00 0.00 38.24 4.95
807 862 2.552373 CCTGTGGTTGTTAGGGTTCTCC 60.552 54.545 0.00 0.00 0.00 3.71
816 871 0.109723 GCAGGGACCTGTGGTTGTTA 59.890 55.000 18.86 0.00 45.24 2.41
855 910 5.221843 TGTGCTTATATGGTCCAAGGTATCC 60.222 44.000 0.00 0.00 0.00 2.59
917 976 3.051803 TGGACCAGACCAGAATCTATCCT 60.052 47.826 0.00 0.00 35.52 3.24
918 977 3.309296 TGGACCAGACCAGAATCTATCC 58.691 50.000 0.00 0.00 35.25 2.59
949 1008 1.666011 GAAGGGAGACGCTCACACA 59.334 57.895 10.94 0.00 36.16 3.72
950 1009 1.079750 GGAAGGGAGACGCTCACAC 60.080 63.158 10.94 5.28 36.16 3.82
958 1017 3.055747 ACGATCAAAAGAGGAAGGGAGAC 60.056 47.826 0.00 0.00 0.00 3.36
973 1032 1.594021 ACGCTGCACACACGATCAA 60.594 52.632 0.00 0.00 0.00 2.57
994 1053 3.857854 CTGCTGCGCCATCGACAC 61.858 66.667 4.18 0.00 38.10 3.67
1603 1841 9.763465 AACGAACCAAACGATAACTAATTTATG 57.237 29.630 0.00 0.00 29.85 1.90
1673 1946 1.274728 CGCCAAGAGGATCAGGATAGG 59.725 57.143 0.00 0.00 37.82 2.57
1830 2116 9.956720 CGATGTGATATGATACTATTAGCATGA 57.043 33.333 0.00 0.00 35.10 3.07
1831 2117 9.956720 TCGATGTGATATGATACTATTAGCATG 57.043 33.333 1.44 0.00 35.10 4.06
1833 2119 8.131731 GCTCGATGTGATATGATACTATTAGCA 58.868 37.037 0.00 0.00 0.00 3.49
1883 2185 1.202394 GCATCTCTCGTGCTCACTCAT 60.202 52.381 0.00 0.00 39.45 2.90
1958 2261 0.032815 GCTGCCACTAGCTAGCTACC 59.967 60.000 20.67 9.64 44.23 3.18
2050 2404 8.344831 GCTGCAGACATATGAACAACATAAATA 58.655 33.333 20.43 0.00 43.47 1.40
2141 2511 2.359107 TGGTCGTAGTCGGCGAGT 60.359 61.111 22.14 22.14 43.10 4.18
2220 2593 2.355132 GGTGATTCTGCTGCTTGATCAG 59.645 50.000 0.00 0.00 37.15 2.90
2225 2598 0.170561 GCTGGTGATTCTGCTGCTTG 59.829 55.000 0.00 0.00 0.00 4.01
2235 2613 3.058160 GTGCGGCTGCTGGTGATT 61.058 61.111 20.27 0.00 43.34 2.57
2401 2804 1.437986 GGCTCCACTACGTGCCTAG 59.562 63.158 0.00 0.00 41.92 3.02
2402 2805 2.412323 CGGCTCCACTACGTGCCTA 61.412 63.158 10.23 0.00 42.90 3.93
2488 2891 4.735132 CGCGTTCTTCCGGGCTCA 62.735 66.667 0.00 0.00 33.98 4.26
2516 2919 3.591254 GAGCTTCTTGGCCGACGGT 62.591 63.158 16.73 0.00 0.00 4.83
2676 3080 3.047280 TCCAACGTGCGCCATCAC 61.047 61.111 4.18 0.00 0.00 3.06
2677 3081 3.047280 GTCCAACGTGCGCCATCA 61.047 61.111 4.18 0.00 0.00 3.07
2678 3082 4.147322 CGTCCAACGTGCGCCATC 62.147 66.667 4.18 0.00 36.74 3.51
2679 3083 4.673298 TCGTCCAACGTGCGCCAT 62.673 61.111 4.18 0.00 43.14 4.40
2680 3084 4.893601 TTCGTCCAACGTGCGCCA 62.894 61.111 4.18 0.00 43.14 5.69
2681 3085 2.649843 TTTTTCGTCCAACGTGCGCC 62.650 55.000 4.18 0.00 43.14 6.53
2682 3086 1.259544 CTTTTTCGTCCAACGTGCGC 61.260 55.000 0.00 0.00 43.14 6.09
2683 3087 0.302288 TCTTTTTCGTCCAACGTGCG 59.698 50.000 0.00 0.00 43.14 5.34
2684 3088 2.461897 TTCTTTTTCGTCCAACGTGC 57.538 45.000 0.00 0.00 43.14 5.34
2685 3089 4.844267 AGAATTCTTTTTCGTCCAACGTG 58.156 39.130 0.88 0.00 43.14 4.49
2686 3090 5.494632 AAGAATTCTTTTTCGTCCAACGT 57.505 34.783 15.11 0.00 36.44 3.99
2687 3091 9.210426 CATATAAGAATTCTTTTTCGTCCAACG 57.790 33.333 25.02 0.00 38.97 4.10
2690 3094 8.889717 GGTCATATAAGAATTCTTTTTCGTCCA 58.110 33.333 25.02 5.79 37.40 4.02
2691 3095 9.110502 AGGTCATATAAGAATTCTTTTTCGTCC 57.889 33.333 25.02 18.91 37.40 4.79
2692 3096 9.922305 CAGGTCATATAAGAATTCTTTTTCGTC 57.078 33.333 25.02 12.16 37.40 4.20
2693 3097 8.398665 GCAGGTCATATAAGAATTCTTTTTCGT 58.601 33.333 25.02 9.70 37.40 3.85
2694 3098 8.616076 AGCAGGTCATATAAGAATTCTTTTTCG 58.384 33.333 25.02 12.28 37.40 3.46
2697 3101 9.247861 ACAAGCAGGTCATATAAGAATTCTTTT 57.752 29.630 25.02 19.26 37.40 2.27
2698 3102 8.814038 ACAAGCAGGTCATATAAGAATTCTTT 57.186 30.769 25.02 14.98 37.40 2.52
2699 3103 9.331282 GTACAAGCAGGTCATATAAGAATTCTT 57.669 33.333 23.53 23.53 39.85 2.52
2700 3104 7.653713 CGTACAAGCAGGTCATATAAGAATTCT 59.346 37.037 0.88 0.88 0.00 2.40
2701 3105 7.569591 GCGTACAAGCAGGTCATATAAGAATTC 60.570 40.741 0.00 0.00 37.05 2.17
2702 3106 6.202954 GCGTACAAGCAGGTCATATAAGAATT 59.797 38.462 0.00 0.00 37.05 2.17
2703 3107 5.696724 GCGTACAAGCAGGTCATATAAGAAT 59.303 40.000 0.00 0.00 37.05 2.40
2704 3108 5.047847 GCGTACAAGCAGGTCATATAAGAA 58.952 41.667 0.00 0.00 37.05 2.52
2705 3109 4.341235 AGCGTACAAGCAGGTCATATAAGA 59.659 41.667 0.00 0.00 40.15 2.10
2706 3110 4.621991 AGCGTACAAGCAGGTCATATAAG 58.378 43.478 0.00 0.00 40.15 1.73
2707 3111 4.665833 AGCGTACAAGCAGGTCATATAA 57.334 40.909 0.00 0.00 40.15 0.98
2719 3123 5.031578 GTCTACTGAGATGAAGCGTACAAG 58.968 45.833 0.00 0.00 33.14 3.16
2725 3129 1.067821 GGGGTCTACTGAGATGAAGCG 59.932 57.143 0.00 0.00 33.14 4.68
2740 3144 1.421268 TGCCATCTGATACATGGGGTC 59.579 52.381 0.00 0.00 41.23 4.46
2748 3152 0.179073 AGCCACGTGCCATCTGATAC 60.179 55.000 10.91 0.00 42.71 2.24
2749 3153 0.541392 AAGCCACGTGCCATCTGATA 59.459 50.000 10.91 0.00 42.71 2.15
2758 3162 0.318955 AGATTTGCAAAGCCACGTGC 60.319 50.000 22.99 5.91 41.29 5.34
2873 4948 6.101442 TCACTTATAATAAAATGGGACGGGGA 59.899 38.462 0.00 0.00 0.00 4.81
2879 4962 7.284489 GTGTGCCTCACTTATAATAAAATGGGA 59.716 37.037 2.51 0.00 43.13 4.37
2910 4993 2.094545 GTCAATTTGGCCCTGCTACTTG 60.095 50.000 0.00 0.00 0.00 3.16
2984 5100 3.050703 GTCATGTCGACGATTGGCT 57.949 52.632 11.62 0.00 34.19 4.75
3000 5116 5.819901 AGATGCCAGTCTAGCTAAATTTGTC 59.180 40.000 0.00 0.00 0.00 3.18
3016 5132 2.613691 GTTGGATTTGCAAGATGCCAG 58.386 47.619 0.00 0.00 44.23 4.85
3076 5192 3.968649 TGCTTCAAAGATGCTTGTTGAC 58.031 40.909 6.47 0.00 34.46 3.18
3081 5197 3.708890 TGTGTTGCTTCAAAGATGCTTG 58.291 40.909 6.47 0.00 34.46 4.01
3083 5199 5.448225 CGATATGTGTTGCTTCAAAGATGCT 60.448 40.000 6.47 0.00 34.46 3.79
3084 5200 4.731961 CGATATGTGTTGCTTCAAAGATGC 59.268 41.667 0.00 0.00 34.04 3.91
3106 5222 0.173481 ATCATGTGTGACGACTCCCG 59.827 55.000 0.00 0.00 45.44 5.14
3108 5224 2.949451 AGATCATGTGTGACGACTCC 57.051 50.000 0.00 0.00 37.14 3.85
3117 5233 2.019249 CGCCAATGGAAGATCATGTGT 58.981 47.619 2.05 0.00 0.00 3.72
3167 5283 3.507162 TGGTCTGGAAAGATGCTCAAA 57.493 42.857 0.00 0.00 0.00 2.69
3180 5296 3.241067 CATTTTCATGCCTTGGTCTGG 57.759 47.619 0.00 0.00 0.00 3.86
3211 5327 1.852895 GTGGAGCTTACGAACTATGCG 59.147 52.381 0.00 0.00 31.99 4.73
3215 5331 2.353406 GCCTTGTGGAGCTTACGAACTA 60.353 50.000 0.00 0.00 34.57 2.24
3219 5335 0.037326 CTGCCTTGTGGAGCTTACGA 60.037 55.000 0.00 0.00 34.57 3.43
3221 5337 0.606401 TGCTGCCTTGTGGAGCTTAC 60.606 55.000 7.20 0.00 37.38 2.34
3272 5388 3.756434 TCTTTGTGCTATGTGGCCTAAAC 59.244 43.478 3.32 0.00 0.00 2.01
3277 5393 2.368439 TGATCTTTGTGCTATGTGGCC 58.632 47.619 0.00 0.00 0.00 5.36
3318 5434 9.713740 GATGTGATTGTTGATATCTTTCAGTTC 57.286 33.333 3.98 3.48 0.00 3.01
3379 5495 6.533730 TGAACATGAATCTGTCTAACACCTT 58.466 36.000 0.00 0.00 0.00 3.50
3465 5582 6.151691 CCAAAAATGGCATAGGAATCGTATG 58.848 40.000 16.14 16.14 35.92 2.39
3506 5623 4.675029 CGTCCGGTTGAAGCCCGT 62.675 66.667 0.00 0.00 43.98 5.28
3544 5661 5.193728 TCAAATATACAGGGGAAGAAAGCCT 59.806 40.000 0.00 0.00 0.00 4.58
3588 5705 8.251750 TGAATCGATTTAATATCCTTAAGGCG 57.748 34.615 17.32 10.90 34.44 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.