Multiple sequence alignment - TraesCS2A01G101300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G101300 chr2A 100.000 2339 0 0 1 2339 54146737 54144399 0.000000e+00 4320
1 TraesCS2A01G101300 chr5A 97.044 981 28 1 1 980 441023990 441023010 0.000000e+00 1650
2 TraesCS2A01G101300 chr5A 96.758 987 30 2 1 986 441017438 441016453 0.000000e+00 1644
3 TraesCS2A01G101300 chr7A 96.942 981 29 1 1 980 443419170 443420150 0.000000e+00 1644
4 TraesCS2A01G101300 chr7A 96.738 981 31 1 1 980 91577622 91576642 0.000000e+00 1633
5 TraesCS2A01G101300 chr7A 96.436 982 33 2 1 980 170417275 170418256 0.000000e+00 1618
6 TraesCS2A01G101300 chr7A 96.875 384 12 0 981 1364 75025929 75025546 0.000000e+00 643
7 TraesCS2A01G101300 chr3A 97.128 975 26 2 7 980 177497911 177496938 0.000000e+00 1644
8 TraesCS2A01G101300 chr3A 96.432 981 34 1 1 980 572433843 572432863 0.000000e+00 1616
9 TraesCS2A01G101300 chr3A 95.550 382 15 1 981 1362 100035009 100034630 5.530000e-171 610
10 TraesCS2A01G101300 chr6A 96.738 981 31 1 1 980 209731772 209730792 0.000000e+00 1633
11 TraesCS2A01G101300 chr6A 96.640 982 31 2 1 980 302671309 302672290 0.000000e+00 1629
12 TraesCS2A01G101300 chr6A 96.296 378 9 3 981 1357 342554795 342555168 1.190000e-172 616
13 TraesCS2A01G101300 chr2D 89.886 791 70 7 1361 2147 52964499 52963715 0.000000e+00 1009
14 TraesCS2A01G101300 chr6B 97.656 384 7 2 981 1363 638232213 638231831 0.000000e+00 658
15 TraesCS2A01G101300 chr6B 95.337 386 9 4 981 1364 367350941 367350563 2.570000e-169 604
16 TraesCS2A01G101300 chr1B 96.623 385 11 2 981 1364 186795814 186796197 2.530000e-179 638
17 TraesCS2A01G101300 chr7D 96.354 384 12 2 981 1363 497006851 497007233 4.240000e-177 630
18 TraesCS2A01G101300 chr5D 96.063 381 13 2 981 1360 551868119 551868498 9.180000e-174 619
19 TraesCS2A01G101300 chr3B 95.420 393 10 3 981 1372 410611854 410612239 9.180000e-174 619


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G101300 chr2A 54144399 54146737 2338 True 4320 4320 100.000 1 2339 1 chr2A.!!$R1 2338
1 TraesCS2A01G101300 chr5A 441023010 441023990 980 True 1650 1650 97.044 1 980 1 chr5A.!!$R2 979
2 TraesCS2A01G101300 chr5A 441016453 441017438 985 True 1644 1644 96.758 1 986 1 chr5A.!!$R1 985
3 TraesCS2A01G101300 chr7A 443419170 443420150 980 False 1644 1644 96.942 1 980 1 chr7A.!!$F2 979
4 TraesCS2A01G101300 chr7A 91576642 91577622 980 True 1633 1633 96.738 1 980 1 chr7A.!!$R2 979
5 TraesCS2A01G101300 chr7A 170417275 170418256 981 False 1618 1618 96.436 1 980 1 chr7A.!!$F1 979
6 TraesCS2A01G101300 chr3A 177496938 177497911 973 True 1644 1644 97.128 7 980 1 chr3A.!!$R2 973
7 TraesCS2A01G101300 chr3A 572432863 572433843 980 True 1616 1616 96.432 1 980 1 chr3A.!!$R3 979
8 TraesCS2A01G101300 chr6A 209730792 209731772 980 True 1633 1633 96.738 1 980 1 chr6A.!!$R1 979
9 TraesCS2A01G101300 chr6A 302671309 302672290 981 False 1629 1629 96.640 1 980 1 chr6A.!!$F1 979
10 TraesCS2A01G101300 chr2D 52963715 52964499 784 True 1009 1009 89.886 1361 2147 1 chr2D.!!$R1 786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 994 1.265635 GGTGTCAACAATTACTGCGCA 59.734 47.619 10.98 10.98 0.0 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2248 2256 0.17668 GTGTCCATCATCGGCAGTCT 59.823 55.0 0.0 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.215399 GTGTTGATCACTTTTCCATCCGAA 59.785 41.667 0.00 0.00 43.13 4.30
74 75 3.430218 CACATCTTCAGTTTCACTCGGAC 59.570 47.826 0.00 0.00 0.00 4.79
347 350 6.828785 ACTATATTTTCACTCGGAAGCCAATT 59.171 34.615 0.00 0.00 36.72 2.32
424 428 4.513692 CACTCGGATGGTAAACTTTTCACA 59.486 41.667 0.00 0.00 0.00 3.58
425 429 5.008217 CACTCGGATGGTAAACTTTTCACAA 59.992 40.000 0.00 0.00 0.00 3.33
426 430 5.591067 ACTCGGATGGTAAACTTTTCACAAA 59.409 36.000 0.00 0.00 0.00 2.83
571 575 1.893137 AGGTTTTTCGATTCAAGGCCC 59.107 47.619 0.00 0.00 0.00 5.80
982 986 4.141756 TGCCAAAATCAGGTGTCAACAATT 60.142 37.500 0.00 0.00 0.00 2.32
983 987 5.069648 TGCCAAAATCAGGTGTCAACAATTA 59.930 36.000 0.00 0.00 0.00 1.40
984 988 5.405269 GCCAAAATCAGGTGTCAACAATTAC 59.595 40.000 0.00 0.00 0.00 1.89
985 989 6.738453 GCCAAAATCAGGTGTCAACAATTACT 60.738 38.462 0.00 0.00 0.00 2.24
986 990 6.642131 CCAAAATCAGGTGTCAACAATTACTG 59.358 38.462 0.00 0.00 0.00 2.74
987 991 5.376854 AATCAGGTGTCAACAATTACTGC 57.623 39.130 0.00 0.00 0.00 4.40
988 992 2.805671 TCAGGTGTCAACAATTACTGCG 59.194 45.455 0.00 0.00 0.00 5.18
989 993 1.535462 AGGTGTCAACAATTACTGCGC 59.465 47.619 0.00 0.00 0.00 6.09
990 994 1.265635 GGTGTCAACAATTACTGCGCA 59.734 47.619 10.98 10.98 0.00 6.09
991 995 2.574322 GTGTCAACAATTACTGCGCAG 58.426 47.619 34.89 34.89 0.00 5.18
992 996 2.223144 GTGTCAACAATTACTGCGCAGA 59.777 45.455 42.03 22.93 0.00 4.26
993 997 3.073678 TGTCAACAATTACTGCGCAGAT 58.926 40.909 42.03 27.23 0.00 2.90
994 998 3.120234 TGTCAACAATTACTGCGCAGATG 60.120 43.478 42.03 31.43 0.00 2.90
995 999 3.073678 TCAACAATTACTGCGCAGATGT 58.926 40.909 42.03 32.01 0.00 3.06
996 1000 3.120234 TCAACAATTACTGCGCAGATGTG 60.120 43.478 42.03 30.90 0.00 3.21
1007 1011 3.312799 AGATGTGCTGATGGCGGA 58.687 55.556 0.00 0.00 45.43 5.54
1008 1012 1.603842 AGATGTGCTGATGGCGGAA 59.396 52.632 0.00 0.00 45.43 4.30
1009 1013 0.463295 AGATGTGCTGATGGCGGAAG 60.463 55.000 0.00 0.00 45.43 3.46
1035 1039 6.136541 CTTGCTCTCAAGTTTGGTTTAACT 57.863 37.500 0.00 0.00 43.55 2.24
1036 1040 5.751243 TGCTCTCAAGTTTGGTTTAACTC 57.249 39.130 0.00 0.00 37.37 3.01
1037 1041 5.437060 TGCTCTCAAGTTTGGTTTAACTCT 58.563 37.500 0.00 0.00 37.37 3.24
1038 1042 5.296780 TGCTCTCAAGTTTGGTTTAACTCTG 59.703 40.000 0.00 0.00 37.37 3.35
1039 1043 5.278022 GCTCTCAAGTTTGGTTTAACTCTGG 60.278 44.000 0.00 0.00 37.37 3.86
1040 1044 4.578928 TCTCAAGTTTGGTTTAACTCTGGC 59.421 41.667 0.00 0.00 37.37 4.85
1041 1045 3.314080 TCAAGTTTGGTTTAACTCTGGCG 59.686 43.478 0.00 0.00 37.37 5.69
1042 1046 1.607148 AGTTTGGTTTAACTCTGGCGC 59.393 47.619 0.00 0.00 33.12 6.53
1043 1047 1.335496 GTTTGGTTTAACTCTGGCGCA 59.665 47.619 10.83 0.00 0.00 6.09
1044 1048 1.681538 TTGGTTTAACTCTGGCGCAA 58.318 45.000 10.83 0.00 0.00 4.85
1045 1049 1.681538 TGGTTTAACTCTGGCGCAAA 58.318 45.000 10.83 0.00 0.00 3.68
1046 1050 1.606668 TGGTTTAACTCTGGCGCAAAG 59.393 47.619 10.83 6.33 0.00 2.77
1047 1051 1.068541 GGTTTAACTCTGGCGCAAAGG 60.069 52.381 10.83 3.16 0.00 3.11
1048 1052 1.068541 GTTTAACTCTGGCGCAAAGGG 60.069 52.381 10.83 8.94 0.00 3.95
1049 1053 1.241315 TTAACTCTGGCGCAAAGGGC 61.241 55.000 10.83 0.00 40.84 5.19
1058 1062 4.329831 GCAAAGGGCGGGATGTAA 57.670 55.556 0.00 0.00 0.00 2.41
1059 1063 2.807247 GCAAAGGGCGGGATGTAAT 58.193 52.632 0.00 0.00 0.00 1.89
1060 1064 0.668535 GCAAAGGGCGGGATGTAATC 59.331 55.000 0.00 0.00 44.55 1.75
1061 1065 1.750682 GCAAAGGGCGGGATGTAATCT 60.751 52.381 0.00 0.00 44.71 2.40
1062 1066 2.222027 CAAAGGGCGGGATGTAATCTC 58.778 52.381 0.00 0.00 44.71 2.75
1063 1067 0.765510 AAGGGCGGGATGTAATCTCC 59.234 55.000 0.00 0.00 42.27 3.71
1064 1068 0.104934 AGGGCGGGATGTAATCTCCT 60.105 55.000 0.00 0.00 42.27 3.69
1065 1069 0.765510 GGGCGGGATGTAATCTCCTT 59.234 55.000 0.00 0.00 42.27 3.36
1066 1070 1.975680 GGGCGGGATGTAATCTCCTTA 59.024 52.381 0.00 0.00 42.27 2.69
1067 1071 2.572104 GGGCGGGATGTAATCTCCTTAT 59.428 50.000 0.00 0.00 42.27 1.73
1068 1072 3.009143 GGGCGGGATGTAATCTCCTTATT 59.991 47.826 0.00 0.00 42.27 1.40
1069 1073 4.224370 GGGCGGGATGTAATCTCCTTATTA 59.776 45.833 0.00 0.00 42.27 0.98
1070 1074 5.104485 GGGCGGGATGTAATCTCCTTATTAT 60.104 44.000 0.00 0.00 42.27 1.28
1071 1075 6.415573 GGCGGGATGTAATCTCCTTATTATT 58.584 40.000 0.00 0.00 42.27 1.40
1072 1076 7.365295 GGGCGGGATGTAATCTCCTTATTATTA 60.365 40.741 0.00 0.00 42.27 0.98
1073 1077 8.044908 GGCGGGATGTAATCTCCTTATTATTAA 58.955 37.037 0.00 0.00 42.27 1.40
1074 1078 8.880750 GCGGGATGTAATCTCCTTATTATTAAC 58.119 37.037 0.00 0.00 42.27 2.01
1108 1112 7.106239 CCTGGAGGTAATTTATACTATGCAGG 58.894 42.308 13.15 13.15 36.88 4.85
1109 1113 7.038302 CCTGGAGGTAATTTATACTATGCAGGA 60.038 40.741 18.05 0.00 40.91 3.86
1110 1114 8.449423 TGGAGGTAATTTATACTATGCAGGAT 57.551 34.615 0.00 0.00 0.00 3.24
1111 1115 8.321353 TGGAGGTAATTTATACTATGCAGGATG 58.679 37.037 0.00 0.00 40.87 3.51
1112 1116 7.770897 GGAGGTAATTTATACTATGCAGGATGG 59.229 40.741 0.00 0.00 35.86 3.51
1113 1117 8.449423 AGGTAATTTATACTATGCAGGATGGA 57.551 34.615 0.00 0.00 44.23 3.41
1114 1118 8.543774 AGGTAATTTATACTATGCAGGATGGAG 58.456 37.037 0.00 0.00 42.42 3.86
1115 1119 7.770897 GGTAATTTATACTATGCAGGATGGAGG 59.229 40.741 0.00 0.00 42.42 4.30
1116 1120 7.574021 AATTTATACTATGCAGGATGGAGGA 57.426 36.000 0.00 0.00 42.42 3.71
1117 1121 6.360370 TTTATACTATGCAGGATGGAGGAC 57.640 41.667 0.00 0.00 42.42 3.85
1118 1122 2.180946 ACTATGCAGGATGGAGGACA 57.819 50.000 0.00 0.00 42.42 4.02
1119 1123 2.481441 ACTATGCAGGATGGAGGACAA 58.519 47.619 0.00 0.00 42.42 3.18
1120 1124 3.051581 ACTATGCAGGATGGAGGACAAT 58.948 45.455 0.00 0.00 42.42 2.71
1121 1125 2.653234 ATGCAGGATGGAGGACAATC 57.347 50.000 0.00 0.00 42.42 2.67
1122 1126 1.288188 TGCAGGATGGAGGACAATCA 58.712 50.000 0.00 0.00 35.86 2.57
1123 1127 1.211212 TGCAGGATGGAGGACAATCAG 59.789 52.381 0.00 0.00 35.86 2.90
1124 1128 1.964552 CAGGATGGAGGACAATCAGC 58.035 55.000 0.00 0.00 0.00 4.26
1125 1129 0.467384 AGGATGGAGGACAATCAGCG 59.533 55.000 0.00 0.00 0.00 5.18
1126 1130 0.533755 GGATGGAGGACAATCAGCGG 60.534 60.000 0.00 0.00 0.00 5.52
1127 1131 0.533755 GATGGAGGACAATCAGCGGG 60.534 60.000 0.00 0.00 0.00 6.13
1128 1132 2.514824 GGAGGACAATCAGCGGGC 60.515 66.667 0.00 0.00 0.00 6.13
1129 1133 2.892425 GAGGACAATCAGCGGGCG 60.892 66.667 0.00 0.00 0.00 6.13
1145 1149 3.807538 CGCGGCAGCAGCAATCTT 61.808 61.111 18.13 0.00 45.49 2.40
1146 1150 2.101770 GCGGCAGCAGCAATCTTC 59.898 61.111 13.20 0.00 44.61 2.87
1147 1151 2.402388 CGGCAGCAGCAATCTTCG 59.598 61.111 2.65 0.00 44.61 3.79
1148 1152 2.102438 CGGCAGCAGCAATCTTCGA 61.102 57.895 2.65 0.00 44.61 3.71
1149 1153 1.427020 GGCAGCAGCAATCTTCGAC 59.573 57.895 2.65 0.00 44.61 4.20
1150 1154 1.059994 GCAGCAGCAATCTTCGACG 59.940 57.895 0.00 0.00 41.58 5.12
1151 1155 1.354337 GCAGCAGCAATCTTCGACGA 61.354 55.000 0.00 0.00 41.58 4.20
1152 1156 1.284657 CAGCAGCAATCTTCGACGAT 58.715 50.000 0.00 0.00 0.00 3.73
1153 1157 1.662629 CAGCAGCAATCTTCGACGATT 59.337 47.619 11.09 11.09 34.07 3.34
1164 1168 8.082013 CAATCTTCGACGATTGTTTTCATTAC 57.918 34.615 27.64 0.00 43.21 1.89
1165 1169 5.839188 TCTTCGACGATTGTTTTCATTACG 58.161 37.500 0.00 0.00 0.00 3.18
1166 1170 3.981210 TCGACGATTGTTTTCATTACGC 58.019 40.909 0.00 0.00 0.00 4.42
1167 1171 3.676172 TCGACGATTGTTTTCATTACGCT 59.324 39.130 0.00 0.00 0.00 5.07
1168 1172 4.150980 TCGACGATTGTTTTCATTACGCTT 59.849 37.500 0.00 0.00 0.00 4.68
1169 1173 4.257447 CGACGATTGTTTTCATTACGCTTG 59.743 41.667 0.00 0.00 0.00 4.01
1170 1174 5.103290 ACGATTGTTTTCATTACGCTTGT 57.897 34.783 0.00 0.00 0.00 3.16
1171 1175 4.909305 ACGATTGTTTTCATTACGCTTGTG 59.091 37.500 0.00 0.00 0.00 3.33
1172 1176 5.143660 CGATTGTTTTCATTACGCTTGTGA 58.856 37.500 0.00 0.00 0.00 3.58
1173 1177 5.794945 CGATTGTTTTCATTACGCTTGTGAT 59.205 36.000 0.00 0.00 0.00 3.06
1174 1178 6.305399 CGATTGTTTTCATTACGCTTGTGATT 59.695 34.615 0.00 0.00 0.00 2.57
1175 1179 7.148983 CGATTGTTTTCATTACGCTTGTGATTT 60.149 33.333 0.00 0.00 0.00 2.17
1176 1180 7.763172 TTGTTTTCATTACGCTTGTGATTTT 57.237 28.000 0.00 0.00 0.00 1.82
1177 1181 8.858003 TTGTTTTCATTACGCTTGTGATTTTA 57.142 26.923 0.00 0.00 0.00 1.52
1178 1182 8.500837 TGTTTTCATTACGCTTGTGATTTTAG 57.499 30.769 0.00 0.00 0.00 1.85
1179 1183 8.132362 TGTTTTCATTACGCTTGTGATTTTAGT 58.868 29.630 0.00 0.00 0.00 2.24
1180 1184 9.601971 GTTTTCATTACGCTTGTGATTTTAGTA 57.398 29.630 0.00 0.00 0.00 1.82
1207 1211 9.926751 TTACTAGATTCGAACGTTGTAATAGAG 57.073 33.333 5.00 8.09 0.00 2.43
1208 1212 8.206325 ACTAGATTCGAACGTTGTAATAGAGA 57.794 34.615 5.00 0.00 0.00 3.10
1209 1213 8.671921 ACTAGATTCGAACGTTGTAATAGAGAA 58.328 33.333 5.00 0.00 0.00 2.87
1210 1214 7.972623 AGATTCGAACGTTGTAATAGAGAAG 57.027 36.000 5.00 0.00 0.00 2.85
1211 1215 6.472808 AGATTCGAACGTTGTAATAGAGAAGC 59.527 38.462 5.00 1.55 0.00 3.86
1212 1216 5.050644 TCGAACGTTGTAATAGAGAAGCA 57.949 39.130 5.00 0.00 0.00 3.91
1213 1217 5.463286 TCGAACGTTGTAATAGAGAAGCAA 58.537 37.500 5.00 0.00 0.00 3.91
1214 1218 5.921976 TCGAACGTTGTAATAGAGAAGCAAA 59.078 36.000 5.00 0.00 0.00 3.68
1215 1219 6.588756 TCGAACGTTGTAATAGAGAAGCAAAT 59.411 34.615 5.00 0.00 0.00 2.32
1216 1220 7.756272 TCGAACGTTGTAATAGAGAAGCAAATA 59.244 33.333 5.00 0.00 0.00 1.40
1217 1221 8.377681 CGAACGTTGTAATAGAGAAGCAAATAA 58.622 33.333 5.00 0.00 0.00 1.40
1220 1224 9.216117 ACGTTGTAATAGAGAAGCAAATAAAGT 57.784 29.630 0.00 0.00 0.00 2.66
1227 1231 9.844257 AATAGAGAAGCAAATAAAGTAGCTCAT 57.156 29.630 0.00 0.00 36.07 2.90
1228 1232 7.551035 AGAGAAGCAAATAAAGTAGCTCATG 57.449 36.000 0.00 0.00 36.07 3.07
1229 1233 7.334090 AGAGAAGCAAATAAAGTAGCTCATGA 58.666 34.615 0.00 0.00 36.07 3.07
1230 1234 7.495279 AGAGAAGCAAATAAAGTAGCTCATGAG 59.505 37.037 18.84 18.84 36.07 2.90
1265 1269 9.732130 ATTAGCTAGATTTTCTTTGACTTCTGT 57.268 29.630 0.00 0.00 0.00 3.41
1266 1270 7.665561 AGCTAGATTTTCTTTGACTTCTGTC 57.334 36.000 0.00 0.00 43.20 3.51
1267 1271 7.449247 AGCTAGATTTTCTTTGACTTCTGTCT 58.551 34.615 0.00 0.00 43.29 3.41
1268 1272 7.387397 AGCTAGATTTTCTTTGACTTCTGTCTG 59.613 37.037 0.00 0.00 43.29 3.51
1269 1273 6.874288 AGATTTTCTTTGACTTCTGTCTGG 57.126 37.500 0.00 0.00 43.29 3.86
1270 1274 6.360618 AGATTTTCTTTGACTTCTGTCTGGT 58.639 36.000 0.00 0.00 43.29 4.00
1271 1275 6.830838 AGATTTTCTTTGACTTCTGTCTGGTT 59.169 34.615 0.00 0.00 43.29 3.67
1272 1276 6.834168 TTTTCTTTGACTTCTGTCTGGTTT 57.166 33.333 0.00 0.00 43.29 3.27
1273 1277 5.818136 TTCTTTGACTTCTGTCTGGTTTG 57.182 39.130 0.00 0.00 43.29 2.93
1274 1278 5.097742 TCTTTGACTTCTGTCTGGTTTGA 57.902 39.130 0.00 0.00 43.29 2.69
1275 1279 5.118990 TCTTTGACTTCTGTCTGGTTTGAG 58.881 41.667 0.00 0.00 43.29 3.02
1276 1280 3.475566 TGACTTCTGTCTGGTTTGAGG 57.524 47.619 0.00 0.00 43.29 3.86
1277 1281 3.038280 TGACTTCTGTCTGGTTTGAGGA 58.962 45.455 0.00 0.00 43.29 3.71
1278 1282 3.454447 TGACTTCTGTCTGGTTTGAGGAA 59.546 43.478 0.00 0.00 43.29 3.36
1279 1283 3.809905 ACTTCTGTCTGGTTTGAGGAAC 58.190 45.455 0.00 0.00 37.53 3.62
1280 1284 5.276812 GACTTCTGTCTGGTTTGAGGAACC 61.277 50.000 1.05 1.05 44.27 3.62
1281 1285 7.432010 GACTTCTGTCTGGTTTGAGGAACCT 62.432 48.000 9.15 0.00 45.03 3.50
1291 1295 5.407407 GTTTGAGGAACCTGTAGATGAGA 57.593 43.478 0.00 0.00 31.85 3.27
1292 1296 5.983540 GTTTGAGGAACCTGTAGATGAGAT 58.016 41.667 0.00 0.00 31.85 2.75
1293 1297 6.410540 GTTTGAGGAACCTGTAGATGAGATT 58.589 40.000 0.00 0.00 31.85 2.40
1294 1298 5.604758 TGAGGAACCTGTAGATGAGATTG 57.395 43.478 0.00 0.00 0.00 2.67
1295 1299 5.026121 TGAGGAACCTGTAGATGAGATTGT 58.974 41.667 0.00 0.00 0.00 2.71
1296 1300 6.194967 TGAGGAACCTGTAGATGAGATTGTA 58.805 40.000 0.00 0.00 0.00 2.41
1297 1301 6.667848 TGAGGAACCTGTAGATGAGATTGTAA 59.332 38.462 0.00 0.00 0.00 2.41
1298 1302 7.345653 TGAGGAACCTGTAGATGAGATTGTAAT 59.654 37.037 0.00 0.00 0.00 1.89
1299 1303 8.783660 AGGAACCTGTAGATGAGATTGTAATA 57.216 34.615 0.00 0.00 0.00 0.98
1300 1304 9.213777 AGGAACCTGTAGATGAGATTGTAATAA 57.786 33.333 0.00 0.00 0.00 1.40
1304 1308 9.386122 ACCTGTAGATGAGATTGTAATAATCCT 57.614 33.333 0.00 0.00 0.00 3.24
1305 1309 9.868277 CCTGTAGATGAGATTGTAATAATCCTC 57.132 37.037 0.00 0.00 0.00 3.71
1312 1316 8.593492 TGAGATTGTAATAATCCTCATGAACG 57.407 34.615 0.00 0.00 0.00 3.95
1313 1317 8.421002 TGAGATTGTAATAATCCTCATGAACGA 58.579 33.333 0.00 0.00 0.00 3.85
1314 1318 9.429359 GAGATTGTAATAATCCTCATGAACGAT 57.571 33.333 0.00 0.00 0.00 3.73
1315 1319 9.212641 AGATTGTAATAATCCTCATGAACGATG 57.787 33.333 0.00 0.00 0.00 3.84
1316 1320 8.908786 ATTGTAATAATCCTCATGAACGATGT 57.091 30.769 0.00 0.00 33.29 3.06
1317 1321 9.996554 ATTGTAATAATCCTCATGAACGATGTA 57.003 29.630 0.00 0.00 33.29 2.29
1318 1322 8.812147 TGTAATAATCCTCATGAACGATGTAC 57.188 34.615 0.00 5.81 33.29 2.90
1319 1323 8.638873 TGTAATAATCCTCATGAACGATGTACT 58.361 33.333 0.00 0.00 33.29 2.73
1320 1324 9.477484 GTAATAATCCTCATGAACGATGTACTT 57.523 33.333 0.00 0.00 33.29 2.24
1321 1325 8.594881 AATAATCCTCATGAACGATGTACTTC 57.405 34.615 0.00 0.00 33.29 3.01
1322 1326 5.860941 ATCCTCATGAACGATGTACTTCT 57.139 39.130 0.00 0.00 33.29 2.85
1323 1327 5.661056 TCCTCATGAACGATGTACTTCTT 57.339 39.130 0.00 0.00 33.29 2.52
1324 1328 6.769134 TCCTCATGAACGATGTACTTCTTA 57.231 37.500 0.00 0.00 33.29 2.10
1325 1329 7.348080 TCCTCATGAACGATGTACTTCTTAT 57.652 36.000 0.00 0.00 33.29 1.73
1326 1330 8.459911 TCCTCATGAACGATGTACTTCTTATA 57.540 34.615 0.00 0.00 33.29 0.98
1327 1331 9.078990 TCCTCATGAACGATGTACTTCTTATAT 57.921 33.333 0.00 0.00 33.29 0.86
1328 1332 9.347934 CCTCATGAACGATGTACTTCTTATATC 57.652 37.037 0.00 0.00 33.29 1.63
1404 1408 8.171840 GTCTACAAATCTGTGAGCTAACATTTC 58.828 37.037 3.78 0.00 36.96 2.17
1405 1409 8.097038 TCTACAAATCTGTGAGCTAACATTTCT 58.903 33.333 3.78 0.00 36.96 2.52
1406 1410 7.138692 ACAAATCTGTGAGCTAACATTTCTC 57.861 36.000 3.78 0.00 33.30 2.87
1408 1412 4.521130 TCTGTGAGCTAACATTTCTCGT 57.479 40.909 3.78 0.00 0.00 4.18
1449 1453 7.982371 ACATGTACTATTAGTTCGTTGTAGC 57.018 36.000 0.00 0.00 0.00 3.58
1484 1488 0.804989 GGCATGTCCAAAGAAGACCG 59.195 55.000 0.00 0.00 33.09 4.79
1494 1498 2.171341 AAGAAGACCGTCAAAGCTCC 57.829 50.000 0.40 0.00 0.00 4.70
1495 1499 1.048601 AGAAGACCGTCAAAGCTCCA 58.951 50.000 0.40 0.00 0.00 3.86
1497 1501 0.759346 AAGACCGTCAAAGCTCCAGT 59.241 50.000 0.40 0.00 0.00 4.00
1498 1502 0.034059 AGACCGTCAAAGCTCCAGTG 59.966 55.000 0.40 0.00 0.00 3.66
1505 1509 1.961394 TCAAAGCTCCAGTGTACGTCT 59.039 47.619 0.00 0.00 0.00 4.18
1555 1560 9.092876 GTGTCAACTTTTGTCATCCAATAAAAA 57.907 29.630 0.00 0.00 31.79 1.94
1557 1562 8.547894 GTCAACTTTTGTCATCCAATAAAAACC 58.452 33.333 0.00 0.00 31.81 3.27
1559 1564 6.530120 ACTTTTGTCATCCAATAAAAACCCC 58.470 36.000 0.00 0.00 31.81 4.95
1588 1593 1.450312 CGAAGTGGCCTGGACATCC 60.450 63.158 5.03 0.00 0.00 3.51
1617 1622 5.811399 TGGCAAATCGAAACTAACTATGG 57.189 39.130 0.00 0.00 0.00 2.74
1622 1627 5.906772 AATCGAAACTAACTATGGGGGAT 57.093 39.130 0.00 0.00 0.00 3.85
1626 1631 6.138263 TCGAAACTAACTATGGGGGATCTAA 58.862 40.000 0.00 0.00 0.00 2.10
1629 1634 4.827789 ACTAACTATGGGGGATCTAAGCA 58.172 43.478 0.00 0.00 0.00 3.91
1638 1643 1.414550 GGGATCTAAGCAGGAGTCCAC 59.585 57.143 12.86 2.67 0.00 4.02
1669 1674 0.744281 ACCAACAAAAAGCCCTCACG 59.256 50.000 0.00 0.00 0.00 4.35
1674 1679 0.310854 CAAAAAGCCCTCACGTGGTC 59.689 55.000 17.00 2.52 0.00 4.02
1678 1683 4.083862 GCCCTCACGTGGTCCTCC 62.084 72.222 17.00 0.00 0.00 4.30
1698 1705 7.287696 GTCCTCCTCTTATTTCTCTCTCTTCAT 59.712 40.741 0.00 0.00 0.00 2.57
1705 1712 9.708092 TCTTATTTCTCTCTCTTCATATGCATG 57.292 33.333 10.16 0.00 0.00 4.06
1717 1724 3.589579 TGCATGGTTCGCATGTCC 58.410 55.556 0.00 0.00 33.55 4.02
1743 1750 3.668832 CCCCCAACCGGATACCAT 58.331 61.111 9.46 0.00 0.00 3.55
1748 1755 1.491332 CCCAACCGGATACCATACCAA 59.509 52.381 9.46 0.00 0.00 3.67
1765 1772 2.431782 ACCAAAATATCCCAGCACATGC 59.568 45.455 0.00 0.00 42.49 4.06
1772 1779 0.181114 TCCCAGCACATGCATAGTCC 59.819 55.000 6.64 0.00 45.16 3.85
1777 1784 0.106519 GCACATGCATAGTCCCCCTT 60.107 55.000 0.00 0.00 41.59 3.95
1786 1793 3.712218 GCATAGTCCCCCTTTACTCTCTT 59.288 47.826 0.00 0.00 0.00 2.85
1788 1795 5.685337 GCATAGTCCCCCTTTACTCTCTTTC 60.685 48.000 0.00 0.00 0.00 2.62
1792 1799 3.844804 TCCCCCTTTACTCTCTTTCCTTC 59.155 47.826 0.00 0.00 0.00 3.46
1798 1805 5.456186 CCTTTACTCTCTTTCCTTCCAACCA 60.456 44.000 0.00 0.00 0.00 3.67
1831 1838 5.912149 TGAATACATTAGATGCCTCCCTT 57.088 39.130 0.00 0.00 0.00 3.95
1833 1840 5.608437 TGAATACATTAGATGCCTCCCTTCT 59.392 40.000 0.00 0.00 33.09 2.85
1838 1845 0.924823 AGATGCCTCCCTTCTGCATT 59.075 50.000 0.00 0.00 45.20 3.56
1844 1851 2.856222 CCTCCCTTCTGCATTATGTCC 58.144 52.381 0.00 0.00 0.00 4.02
1845 1852 2.173356 CCTCCCTTCTGCATTATGTCCA 59.827 50.000 0.00 0.00 0.00 4.02
1854 1861 4.350520 TCTGCATTATGTCCATGGACCATA 59.649 41.667 36.27 28.42 43.97 2.74
1864 1871 3.117926 TCCATGGACCATAACAGGACATG 60.118 47.826 11.44 12.18 42.06 3.21
1875 1882 7.178983 ACCATAACAGGACATGAAAATGAACAT 59.821 33.333 0.00 0.00 0.00 2.71
1882 1889 6.925165 AGGACATGAAAATGAACATTTGTGAC 59.075 34.615 12.51 11.43 40.57 3.67
1901 1908 0.319211 CGTCCGTTTACTGGTCAGCA 60.319 55.000 0.00 0.00 0.00 4.41
1903 1910 2.423577 GTCCGTTTACTGGTCAGCATT 58.576 47.619 0.00 0.00 0.00 3.56
1905 1912 2.037902 TCCGTTTACTGGTCAGCATTGA 59.962 45.455 0.00 0.00 0.00 2.57
1914 1921 1.684248 GGTCAGCATTGAAGATGCCCT 60.684 52.381 7.33 0.00 45.59 5.19
1919 1926 3.252701 CAGCATTGAAGATGCCCTGATAC 59.747 47.826 7.33 0.00 45.59 2.24
1933 1940 4.323792 GCCCTGATACAGTACCATGCATAT 60.324 45.833 0.00 0.00 0.00 1.78
1940 1947 5.947228 ACAGTACCATGCATATACATTGC 57.053 39.130 17.96 0.00 40.55 3.56
1971 1978 3.935828 GGAACTGGATGCTAACTGAAGAC 59.064 47.826 0.00 0.00 0.00 3.01
1979 1986 6.939730 TGGATGCTAACTGAAGACAACAAATA 59.060 34.615 0.00 0.00 0.00 1.40
2008 2015 8.453238 ACTTTCATCTGTAGTATATCTCGTGT 57.547 34.615 0.00 0.00 0.00 4.49
2012 2019 7.217906 TCATCTGTAGTATATCTCGTGTGAGT 58.782 38.462 0.00 0.00 43.09 3.41
2014 2021 6.579865 TCTGTAGTATATCTCGTGTGAGTGA 58.420 40.000 0.00 0.00 43.09 3.41
2026 2033 3.553917 CGTGTGAGTGACATACAACAACA 59.446 43.478 0.00 0.00 39.94 3.33
2041 2048 5.336744 ACAACAACAATTACCACAAAGACG 58.663 37.500 0.00 0.00 0.00 4.18
2108 2115 4.219944 TGTGTTTAGTACTGTAGCCTCAGG 59.780 45.833 5.39 0.00 39.48 3.86
2109 2116 4.461781 GTGTTTAGTACTGTAGCCTCAGGA 59.538 45.833 5.39 0.00 39.48 3.86
2110 2117 4.461781 TGTTTAGTACTGTAGCCTCAGGAC 59.538 45.833 5.39 11.71 46.37 3.85
2139 2147 8.837788 TATGACATCATATGGAACAGTTCATC 57.162 34.615 15.36 0.00 38.87 2.92
2147 2155 2.548057 TGGAACAGTTCATCGTTGCTTC 59.452 45.455 15.36 0.00 34.84 3.86
2148 2156 2.548057 GGAACAGTTCATCGTTGCTTCA 59.452 45.455 15.36 0.00 31.48 3.02
2149 2157 3.545633 GAACAGTTCATCGTTGCTTCAC 58.454 45.455 8.54 0.00 0.00 3.18
2150 2158 1.526887 ACAGTTCATCGTTGCTTCACG 59.473 47.619 0.00 0.00 41.78 4.35
2151 2159 0.512952 AGTTCATCGTTGCTTCACGC 59.487 50.000 0.00 0.00 40.14 5.34
2152 2160 0.452784 GTTCATCGTTGCTTCACGCC 60.453 55.000 0.00 0.00 40.14 5.68
2153 2161 1.573829 TTCATCGTTGCTTCACGCCC 61.574 55.000 0.00 0.00 40.14 6.13
2154 2162 2.034879 CATCGTTGCTTCACGCCCT 61.035 57.895 0.00 0.00 40.14 5.19
2155 2163 0.739462 CATCGTTGCTTCACGCCCTA 60.739 55.000 0.00 0.00 40.14 3.53
2156 2164 0.036765 ATCGTTGCTTCACGCCCTAA 60.037 50.000 0.00 0.00 40.14 2.69
2157 2165 0.036765 TCGTTGCTTCACGCCCTAAT 60.037 50.000 0.00 0.00 40.14 1.73
2158 2166 0.802494 CGTTGCTTCACGCCCTAATT 59.198 50.000 0.00 0.00 38.05 1.40
2159 2167 1.202031 CGTTGCTTCACGCCCTAATTC 60.202 52.381 0.00 0.00 38.05 2.17
2160 2168 2.084546 GTTGCTTCACGCCCTAATTCT 58.915 47.619 0.00 0.00 38.05 2.40
2161 2169 1.737838 TGCTTCACGCCCTAATTCTG 58.262 50.000 0.00 0.00 38.05 3.02
2162 2170 1.003118 TGCTTCACGCCCTAATTCTGT 59.997 47.619 0.00 0.00 38.05 3.41
2163 2171 2.235155 TGCTTCACGCCCTAATTCTGTA 59.765 45.455 0.00 0.00 38.05 2.74
2164 2172 2.866762 GCTTCACGCCCTAATTCTGTAG 59.133 50.000 0.00 0.00 0.00 2.74
2165 2173 2.596904 TCACGCCCTAATTCTGTAGC 57.403 50.000 0.00 0.00 0.00 3.58
2166 2174 1.828595 TCACGCCCTAATTCTGTAGCA 59.171 47.619 0.00 0.00 0.00 3.49
2167 2175 2.235155 TCACGCCCTAATTCTGTAGCAA 59.765 45.455 0.00 0.00 0.00 3.91
2168 2176 2.609459 CACGCCCTAATTCTGTAGCAAG 59.391 50.000 0.00 0.00 0.00 4.01
2169 2177 2.500098 ACGCCCTAATTCTGTAGCAAGA 59.500 45.455 0.00 0.00 0.00 3.02
2170 2178 3.134804 ACGCCCTAATTCTGTAGCAAGAT 59.865 43.478 0.00 0.00 0.00 2.40
2171 2179 4.130118 CGCCCTAATTCTGTAGCAAGATT 58.870 43.478 0.00 0.00 0.00 2.40
2172 2180 5.163343 ACGCCCTAATTCTGTAGCAAGATTA 60.163 40.000 0.00 0.00 0.00 1.75
2173 2181 5.177696 CGCCCTAATTCTGTAGCAAGATTAC 59.822 44.000 0.00 0.00 0.00 1.89
2174 2182 6.292150 GCCCTAATTCTGTAGCAAGATTACT 58.708 40.000 0.00 0.00 0.00 2.24
2175 2183 6.768381 GCCCTAATTCTGTAGCAAGATTACTT 59.232 38.462 0.00 0.00 36.73 2.24
2176 2184 7.041712 GCCCTAATTCTGTAGCAAGATTACTTC 60.042 40.741 0.00 0.00 33.70 3.01
2177 2185 7.987458 CCCTAATTCTGTAGCAAGATTACTTCA 59.013 37.037 0.00 0.00 33.70 3.02
2178 2186 9.383519 CCTAATTCTGTAGCAAGATTACTTCAA 57.616 33.333 0.00 0.00 33.70 2.69
2181 2189 7.891183 TTCTGTAGCAAGATTACTTCAAGAC 57.109 36.000 0.00 0.00 33.70 3.01
2182 2190 7.233389 TCTGTAGCAAGATTACTTCAAGACT 57.767 36.000 0.00 0.00 33.70 3.24
2183 2191 7.093354 TCTGTAGCAAGATTACTTCAAGACTG 58.907 38.462 0.00 0.00 33.70 3.51
2184 2192 5.639506 TGTAGCAAGATTACTTCAAGACTGC 59.360 40.000 0.00 0.00 33.70 4.40
2185 2193 4.006319 AGCAAGATTACTTCAAGACTGCC 58.994 43.478 0.00 0.00 33.70 4.85
2186 2194 3.181516 GCAAGATTACTTCAAGACTGCCG 60.182 47.826 0.00 0.00 33.70 5.69
2187 2195 3.963428 AGATTACTTCAAGACTGCCGT 57.037 42.857 0.00 0.00 0.00 5.68
2188 2196 3.589988 AGATTACTTCAAGACTGCCGTG 58.410 45.455 0.00 0.00 0.00 4.94
2189 2197 3.258372 AGATTACTTCAAGACTGCCGTGA 59.742 43.478 0.00 0.00 0.00 4.35
2190 2198 3.678056 TTACTTCAAGACTGCCGTGAT 57.322 42.857 0.00 0.00 33.43 3.06
2191 2199 4.794278 TTACTTCAAGACTGCCGTGATA 57.206 40.909 0.00 0.00 33.43 2.15
2192 2200 3.895232 ACTTCAAGACTGCCGTGATAT 57.105 42.857 0.00 0.00 33.43 1.63
2193 2201 4.207891 ACTTCAAGACTGCCGTGATATT 57.792 40.909 0.00 0.00 33.43 1.28
2194 2202 5.339008 ACTTCAAGACTGCCGTGATATTA 57.661 39.130 0.00 0.00 33.43 0.98
2195 2203 5.918608 ACTTCAAGACTGCCGTGATATTAT 58.081 37.500 0.00 0.00 33.43 1.28
2196 2204 7.050970 ACTTCAAGACTGCCGTGATATTATA 57.949 36.000 0.00 0.00 33.43 0.98
2197 2205 7.671302 ACTTCAAGACTGCCGTGATATTATAT 58.329 34.615 0.00 0.00 33.43 0.86
2198 2206 8.150945 ACTTCAAGACTGCCGTGATATTATATT 58.849 33.333 0.00 0.00 33.43 1.28
2199 2207 7.889589 TCAAGACTGCCGTGATATTATATTG 57.110 36.000 0.00 0.00 0.00 1.90
2200 2208 7.666623 TCAAGACTGCCGTGATATTATATTGA 58.333 34.615 0.00 0.00 0.00 2.57
2201 2209 8.147704 TCAAGACTGCCGTGATATTATATTGAA 58.852 33.333 0.00 0.00 0.00 2.69
2202 2210 7.891183 AGACTGCCGTGATATTATATTGAAC 57.109 36.000 0.00 0.00 0.00 3.18
2203 2211 6.586463 AGACTGCCGTGATATTATATTGAACG 59.414 38.462 8.22 8.22 0.00 3.95
2207 2215 6.721571 CCGTGATATTATATTGAACGGCTT 57.278 37.500 16.35 0.00 42.09 4.35
2208 2216 7.129109 CCGTGATATTATATTGAACGGCTTT 57.871 36.000 16.35 0.00 42.09 3.51
2209 2217 8.246908 CCGTGATATTATATTGAACGGCTTTA 57.753 34.615 16.35 0.00 42.09 1.85
2210 2218 8.714179 CCGTGATATTATATTGAACGGCTTTAA 58.286 33.333 16.35 0.00 42.09 1.52
2211 2219 9.741168 CGTGATATTATATTGAACGGCTTTAAG 57.259 33.333 7.62 0.00 0.00 1.85
2216 2224 7.801716 TTATATTGAACGGCTTTAAGATGCT 57.198 32.000 0.00 0.00 0.00 3.79
2217 2225 4.622701 ATTGAACGGCTTTAAGATGCTC 57.377 40.909 0.00 0.00 0.00 4.26
2218 2226 3.052455 TGAACGGCTTTAAGATGCTCA 57.948 42.857 0.00 0.00 0.00 4.26
2219 2227 3.407698 TGAACGGCTTTAAGATGCTCAA 58.592 40.909 0.00 0.00 0.00 3.02
2220 2228 3.436704 TGAACGGCTTTAAGATGCTCAAG 59.563 43.478 0.00 0.00 0.00 3.02
2221 2229 3.334583 ACGGCTTTAAGATGCTCAAGA 57.665 42.857 0.00 0.00 0.00 3.02
2222 2230 3.003480 ACGGCTTTAAGATGCTCAAGAC 58.997 45.455 0.00 0.00 0.00 3.01
2223 2231 3.265791 CGGCTTTAAGATGCTCAAGACT 58.734 45.455 0.00 0.00 0.00 3.24
2224 2232 3.063180 CGGCTTTAAGATGCTCAAGACTG 59.937 47.826 0.00 0.00 0.00 3.51
2225 2233 3.181502 GGCTTTAAGATGCTCAAGACTGC 60.182 47.826 0.00 0.00 0.00 4.40
2226 2234 3.688673 GCTTTAAGATGCTCAAGACTGCT 59.311 43.478 0.00 0.00 0.00 4.24
2227 2235 4.155644 GCTTTAAGATGCTCAAGACTGCTT 59.844 41.667 0.00 0.00 33.74 3.91
2228 2236 5.673318 GCTTTAAGATGCTCAAGACTGCTTC 60.673 44.000 0.00 0.00 34.77 3.86
2229 2237 3.413846 AAGATGCTCAAGACTGCTTCA 57.586 42.857 0.00 0.00 36.30 3.02
2230 2238 3.413846 AGATGCTCAAGACTGCTTCAA 57.586 42.857 0.00 0.00 36.30 2.69
2231 2239 3.336468 AGATGCTCAAGACTGCTTCAAG 58.664 45.455 0.00 0.00 36.30 3.02
2232 2240 2.916702 TGCTCAAGACTGCTTCAAGA 57.083 45.000 0.00 0.00 30.14 3.02
2233 2241 3.413846 TGCTCAAGACTGCTTCAAGAT 57.586 42.857 0.00 0.00 30.14 2.40
2234 2242 3.748083 TGCTCAAGACTGCTTCAAGATT 58.252 40.909 0.00 0.00 30.14 2.40
2235 2243 3.501062 TGCTCAAGACTGCTTCAAGATTG 59.499 43.478 0.00 0.00 30.14 2.67
2236 2244 3.670091 GCTCAAGACTGCTTCAAGATTGC 60.670 47.826 0.00 0.00 30.14 3.56
2237 2245 2.816087 TCAAGACTGCTTCAAGATTGCC 59.184 45.455 0.00 0.00 30.14 4.52
2238 2246 1.446907 AGACTGCTTCAAGATTGCCG 58.553 50.000 0.00 0.00 0.00 5.69
2239 2247 0.179179 GACTGCTTCAAGATTGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
2240 2248 0.890542 ACTGCTTCAAGATTGCCGCA 60.891 50.000 0.00 0.00 33.98 5.69
2241 2249 0.454600 CTGCTTCAAGATTGCCGCAT 59.545 50.000 0.00 0.00 34.39 4.73
2242 2250 0.452987 TGCTTCAAGATTGCCGCATC 59.547 50.000 0.00 0.00 31.51 3.91
2243 2251 0.737219 GCTTCAAGATTGCCGCATCT 59.263 50.000 0.00 0.00 0.00 2.90
2244 2252 1.942657 GCTTCAAGATTGCCGCATCTA 59.057 47.619 0.00 0.00 0.00 1.98
2245 2253 2.355756 GCTTCAAGATTGCCGCATCTAA 59.644 45.455 0.00 0.00 0.00 2.10
2246 2254 3.004106 GCTTCAAGATTGCCGCATCTAAT 59.996 43.478 0.00 0.00 0.00 1.73
2247 2255 4.214119 GCTTCAAGATTGCCGCATCTAATA 59.786 41.667 0.00 0.00 0.00 0.98
2248 2256 5.277974 GCTTCAAGATTGCCGCATCTAATAA 60.278 40.000 0.00 0.00 0.00 1.40
2249 2257 5.929697 TCAAGATTGCCGCATCTAATAAG 57.070 39.130 0.00 0.00 0.00 1.73
2250 2258 5.610398 TCAAGATTGCCGCATCTAATAAGA 58.390 37.500 0.00 0.00 35.80 2.10
2251 2259 5.466728 TCAAGATTGCCGCATCTAATAAGAC 59.533 40.000 0.00 0.00 33.57 3.01
2252 2260 5.220710 AGATTGCCGCATCTAATAAGACT 57.779 39.130 0.00 0.00 33.57 3.24
2253 2261 4.993584 AGATTGCCGCATCTAATAAGACTG 59.006 41.667 0.00 0.00 33.57 3.51
2254 2262 2.483876 TGCCGCATCTAATAAGACTGC 58.516 47.619 0.00 0.00 33.57 4.40
2255 2263 1.801178 GCCGCATCTAATAAGACTGCC 59.199 52.381 0.00 0.00 35.01 4.85
2256 2264 2.061773 CCGCATCTAATAAGACTGCCG 58.938 52.381 0.00 0.00 35.01 5.69
2257 2265 2.288213 CCGCATCTAATAAGACTGCCGA 60.288 50.000 0.00 0.00 35.01 5.54
2258 2266 3.579709 CGCATCTAATAAGACTGCCGAT 58.420 45.455 0.00 0.00 35.01 4.18
2259 2267 3.366121 CGCATCTAATAAGACTGCCGATG 59.634 47.826 0.00 0.00 35.01 3.84
2260 2268 4.560128 GCATCTAATAAGACTGCCGATGA 58.440 43.478 0.00 0.00 33.57 2.92
2261 2269 5.174395 GCATCTAATAAGACTGCCGATGAT 58.826 41.667 0.00 0.00 33.57 2.45
2262 2270 5.063186 GCATCTAATAAGACTGCCGATGATG 59.937 44.000 0.00 0.00 33.57 3.07
2263 2271 5.139435 TCTAATAAGACTGCCGATGATGG 57.861 43.478 0.00 0.00 0.00 3.51
2264 2272 4.832823 TCTAATAAGACTGCCGATGATGGA 59.167 41.667 0.00 0.00 0.00 3.41
2265 2273 2.890808 TAAGACTGCCGATGATGGAC 57.109 50.000 0.00 0.00 0.00 4.02
2266 2274 0.904649 AAGACTGCCGATGATGGACA 59.095 50.000 0.00 0.00 0.00 4.02
2267 2275 0.176680 AGACTGCCGATGATGGACAC 59.823 55.000 0.00 0.00 0.00 3.67
2268 2276 0.811616 GACTGCCGATGATGGACACC 60.812 60.000 0.00 0.00 0.00 4.16
2269 2277 1.221566 CTGCCGATGATGGACACCA 59.778 57.895 0.00 0.00 38.19 4.17
2270 2278 0.812811 CTGCCGATGATGGACACCAG 60.813 60.000 0.00 0.00 36.75 4.00
2271 2279 1.221840 GCCGATGATGGACACCAGT 59.778 57.895 0.00 0.00 36.75 4.00
2272 2280 0.392998 GCCGATGATGGACACCAGTT 60.393 55.000 0.00 0.00 36.75 3.16
2273 2281 1.950484 GCCGATGATGGACACCAGTTT 60.950 52.381 0.00 0.00 36.75 2.66
2274 2282 2.436417 CCGATGATGGACACCAGTTTT 58.564 47.619 0.00 0.00 36.75 2.43
2275 2283 2.162208 CCGATGATGGACACCAGTTTTG 59.838 50.000 0.00 0.00 36.75 2.44
2276 2284 2.414559 CGATGATGGACACCAGTTTTGC 60.415 50.000 0.00 0.00 36.75 3.68
2277 2285 2.363306 TGATGGACACCAGTTTTGCT 57.637 45.000 0.00 0.00 36.75 3.91
2278 2286 3.500448 TGATGGACACCAGTTTTGCTA 57.500 42.857 0.00 0.00 36.75 3.49
2279 2287 3.146066 TGATGGACACCAGTTTTGCTAC 58.854 45.455 0.00 0.00 36.75 3.58
2280 2288 1.588674 TGGACACCAGTTTTGCTACG 58.411 50.000 0.00 0.00 0.00 3.51
2281 2289 1.134340 TGGACACCAGTTTTGCTACGT 60.134 47.619 0.00 0.00 0.00 3.57
2282 2290 1.263217 GGACACCAGTTTTGCTACGTG 59.737 52.381 0.00 0.00 34.57 4.49
2283 2291 1.937899 GACACCAGTTTTGCTACGTGT 59.062 47.619 0.00 0.00 40.46 4.49
2284 2292 3.125316 GACACCAGTTTTGCTACGTGTA 58.875 45.455 0.00 0.00 38.92 2.90
2285 2293 3.533547 ACACCAGTTTTGCTACGTGTAA 58.466 40.909 0.00 0.00 37.81 2.41
2286 2294 3.940221 ACACCAGTTTTGCTACGTGTAAA 59.060 39.130 0.00 0.00 37.81 2.01
2287 2295 4.577283 ACACCAGTTTTGCTACGTGTAAAT 59.423 37.500 0.00 0.00 37.81 1.40
2288 2296 4.909305 CACCAGTTTTGCTACGTGTAAATG 59.091 41.667 0.00 0.00 30.72 2.32
2289 2297 4.577283 ACCAGTTTTGCTACGTGTAAATGT 59.423 37.500 0.00 0.00 30.72 2.71
2290 2298 5.144359 CCAGTTTTGCTACGTGTAAATGTC 58.856 41.667 0.00 0.00 30.72 3.06
2291 2299 5.049680 CCAGTTTTGCTACGTGTAAATGTCT 60.050 40.000 0.00 0.00 30.72 3.41
2292 2300 6.071463 CAGTTTTGCTACGTGTAAATGTCTC 58.929 40.000 0.00 0.00 30.72 3.36
2293 2301 5.756347 AGTTTTGCTACGTGTAAATGTCTCA 59.244 36.000 0.00 0.00 30.72 3.27
2294 2302 5.585500 TTTGCTACGTGTAAATGTCTCAC 57.415 39.130 0.00 0.00 0.00 3.51
2295 2303 4.514781 TGCTACGTGTAAATGTCTCACT 57.485 40.909 0.00 0.00 0.00 3.41
2296 2304 4.234574 TGCTACGTGTAAATGTCTCACTG 58.765 43.478 0.00 0.00 0.00 3.66
2297 2305 4.022676 TGCTACGTGTAAATGTCTCACTGA 60.023 41.667 0.00 0.00 0.00 3.41
2298 2306 5.103000 GCTACGTGTAAATGTCTCACTGAT 58.897 41.667 0.00 0.00 0.00 2.90
2299 2307 5.004821 GCTACGTGTAAATGTCTCACTGATG 59.995 44.000 0.00 0.00 0.00 3.07
2300 2308 5.134202 ACGTGTAAATGTCTCACTGATGA 57.866 39.130 0.00 0.00 0.00 2.92
2301 2309 5.538118 ACGTGTAAATGTCTCACTGATGAA 58.462 37.500 0.00 0.00 33.30 2.57
2302 2310 5.989168 ACGTGTAAATGTCTCACTGATGAAA 59.011 36.000 0.00 0.00 33.30 2.69
2303 2311 6.481976 ACGTGTAAATGTCTCACTGATGAAAA 59.518 34.615 0.00 0.00 33.30 2.29
2304 2312 7.011950 ACGTGTAAATGTCTCACTGATGAAAAA 59.988 33.333 0.00 0.00 33.30 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
347 350 9.199982 AGTGAAAACTTATCGATCGAGTAAAAA 57.800 29.630 23.84 10.85 0.00 1.94
424 428 4.642885 TGTGTTTTCAGTCGGGAAATCTTT 59.357 37.500 0.00 0.00 36.71 2.52
425 429 4.204012 TGTGTTTTCAGTCGGGAAATCTT 58.796 39.130 0.00 0.00 36.71 2.40
426 430 3.815401 CTGTGTTTTCAGTCGGGAAATCT 59.185 43.478 0.00 0.00 36.71 2.40
504 508 4.041240 CGAGCCGATCGTTTTTCATATC 57.959 45.455 15.09 0.00 46.62 1.63
571 575 2.222027 GAGTAATTCGGCCATCAAGGG 58.778 52.381 2.24 0.00 38.09 3.95
988 992 2.713770 CGCCATCAGCACATCTGC 59.286 61.111 0.00 0.00 44.04 4.26
989 993 0.745486 TTCCGCCATCAGCACATCTG 60.745 55.000 0.00 0.00 44.04 2.90
990 994 0.463295 CTTCCGCCATCAGCACATCT 60.463 55.000 0.00 0.00 44.04 2.90
991 995 2.020131 CTTCCGCCATCAGCACATC 58.980 57.895 0.00 0.00 44.04 3.06
992 996 2.117156 GCTTCCGCCATCAGCACAT 61.117 57.895 0.00 0.00 44.04 3.21
993 997 2.747460 GCTTCCGCCATCAGCACA 60.747 61.111 0.00 0.00 44.04 4.57
994 998 2.437359 AGCTTCCGCCATCAGCAC 60.437 61.111 0.00 0.00 44.04 4.40
995 999 2.124983 GAGCTTCCGCCATCAGCA 60.125 61.111 0.00 0.00 44.04 4.41
996 1000 1.451028 AAGAGCTTCCGCCATCAGC 60.451 57.895 0.00 0.00 36.60 4.26
997 1001 1.712977 GCAAGAGCTTCCGCCATCAG 61.713 60.000 0.00 0.00 37.91 2.90
998 1002 1.746615 GCAAGAGCTTCCGCCATCA 60.747 57.895 0.00 0.00 37.91 3.07
999 1003 3.105659 GCAAGAGCTTCCGCCATC 58.894 61.111 0.00 0.00 37.91 3.51
1013 1017 5.885912 AGAGTTAAACCAAACTTGAGAGCAA 59.114 36.000 0.00 0.00 39.78 3.91
1014 1018 5.296780 CAGAGTTAAACCAAACTTGAGAGCA 59.703 40.000 0.00 0.00 39.78 4.26
1015 1019 5.278022 CCAGAGTTAAACCAAACTTGAGAGC 60.278 44.000 0.00 0.00 39.78 4.09
1016 1020 5.278022 GCCAGAGTTAAACCAAACTTGAGAG 60.278 44.000 0.00 0.00 39.78 3.20
1017 1021 4.578928 GCCAGAGTTAAACCAAACTTGAGA 59.421 41.667 0.00 0.00 39.78 3.27
1018 1022 4.554723 CGCCAGAGTTAAACCAAACTTGAG 60.555 45.833 0.00 0.00 39.78 3.02
1019 1023 3.314080 CGCCAGAGTTAAACCAAACTTGA 59.686 43.478 0.00 0.00 39.78 3.02
1020 1024 3.628017 CGCCAGAGTTAAACCAAACTTG 58.372 45.455 0.00 0.00 39.78 3.16
1021 1025 2.034179 GCGCCAGAGTTAAACCAAACTT 59.966 45.455 0.00 0.00 39.78 2.66
1022 1026 1.607148 GCGCCAGAGTTAAACCAAACT 59.393 47.619 0.00 0.00 42.36 2.66
1023 1027 1.335496 TGCGCCAGAGTTAAACCAAAC 59.665 47.619 4.18 0.00 0.00 2.93
1024 1028 1.681538 TGCGCCAGAGTTAAACCAAA 58.318 45.000 4.18 0.00 0.00 3.28
1025 1029 1.681538 TTGCGCCAGAGTTAAACCAA 58.318 45.000 4.18 0.00 0.00 3.67
1026 1030 1.606668 CTTTGCGCCAGAGTTAAACCA 59.393 47.619 4.18 0.00 0.00 3.67
1027 1031 1.068541 CCTTTGCGCCAGAGTTAAACC 60.069 52.381 4.18 0.00 0.00 3.27
1028 1032 1.068541 CCCTTTGCGCCAGAGTTAAAC 60.069 52.381 4.18 0.00 0.00 2.01
1029 1033 1.243902 CCCTTTGCGCCAGAGTTAAA 58.756 50.000 4.18 0.00 0.00 1.52
1030 1034 1.241315 GCCCTTTGCGCCAGAGTTAA 61.241 55.000 4.18 0.00 0.00 2.01
1031 1035 1.674322 GCCCTTTGCGCCAGAGTTA 60.674 57.895 4.18 0.00 0.00 2.24
1032 1036 2.985847 GCCCTTTGCGCCAGAGTT 60.986 61.111 4.18 0.00 0.00 3.01
1041 1045 0.668535 GATTACATCCCGCCCTTTGC 59.331 55.000 0.00 0.00 0.00 3.68
1042 1046 2.222027 GAGATTACATCCCGCCCTTTG 58.778 52.381 0.00 0.00 0.00 2.77
1043 1047 1.143073 GGAGATTACATCCCGCCCTTT 59.857 52.381 0.00 0.00 0.00 3.11
1044 1048 0.765510 GGAGATTACATCCCGCCCTT 59.234 55.000 0.00 0.00 0.00 3.95
1045 1049 0.104934 AGGAGATTACATCCCGCCCT 60.105 55.000 0.00 0.00 37.57 5.19
1046 1050 0.765510 AAGGAGATTACATCCCGCCC 59.234 55.000 0.00 0.00 37.57 6.13
1047 1051 3.983044 ATAAGGAGATTACATCCCGCC 57.017 47.619 0.00 0.00 37.57 6.13
1048 1052 8.880750 GTTAATAATAAGGAGATTACATCCCGC 58.119 37.037 0.00 0.00 37.57 6.13
1083 1087 7.038302 TCCTGCATAGTATAAATTACCTCCAGG 60.038 40.741 0.00 0.00 42.17 4.45
1084 1088 7.907389 TCCTGCATAGTATAAATTACCTCCAG 58.093 38.462 0.00 0.00 0.00 3.86
1085 1089 7.865530 TCCTGCATAGTATAAATTACCTCCA 57.134 36.000 0.00 0.00 0.00 3.86
1086 1090 7.770897 CCATCCTGCATAGTATAAATTACCTCC 59.229 40.741 0.00 0.00 0.00 4.30
1087 1091 8.540388 TCCATCCTGCATAGTATAAATTACCTC 58.460 37.037 0.00 0.00 0.00 3.85
1088 1092 8.449423 TCCATCCTGCATAGTATAAATTACCT 57.551 34.615 0.00 0.00 0.00 3.08
1089 1093 7.770897 CCTCCATCCTGCATAGTATAAATTACC 59.229 40.741 0.00 0.00 0.00 2.85
1090 1094 8.540388 TCCTCCATCCTGCATAGTATAAATTAC 58.460 37.037 0.00 0.00 0.00 1.89
1091 1095 8.540388 GTCCTCCATCCTGCATAGTATAAATTA 58.460 37.037 0.00 0.00 0.00 1.40
1092 1096 7.017551 TGTCCTCCATCCTGCATAGTATAAATT 59.982 37.037 0.00 0.00 0.00 1.82
1093 1097 6.501805 TGTCCTCCATCCTGCATAGTATAAAT 59.498 38.462 0.00 0.00 0.00 1.40
1094 1098 5.843969 TGTCCTCCATCCTGCATAGTATAAA 59.156 40.000 0.00 0.00 0.00 1.40
1095 1099 5.402630 TGTCCTCCATCCTGCATAGTATAA 58.597 41.667 0.00 0.00 0.00 0.98
1096 1100 5.010708 TGTCCTCCATCCTGCATAGTATA 57.989 43.478 0.00 0.00 0.00 1.47
1097 1101 3.861846 TGTCCTCCATCCTGCATAGTAT 58.138 45.455 0.00 0.00 0.00 2.12
1098 1102 3.328535 TGTCCTCCATCCTGCATAGTA 57.671 47.619 0.00 0.00 0.00 1.82
1099 1103 2.180946 TGTCCTCCATCCTGCATAGT 57.819 50.000 0.00 0.00 0.00 2.12
1100 1104 3.072038 TGATTGTCCTCCATCCTGCATAG 59.928 47.826 0.00 0.00 0.00 2.23
1101 1105 3.047857 TGATTGTCCTCCATCCTGCATA 58.952 45.455 0.00 0.00 0.00 3.14
1102 1106 1.848388 TGATTGTCCTCCATCCTGCAT 59.152 47.619 0.00 0.00 0.00 3.96
1103 1107 1.211212 CTGATTGTCCTCCATCCTGCA 59.789 52.381 0.00 0.00 0.00 4.41
1104 1108 1.964552 CTGATTGTCCTCCATCCTGC 58.035 55.000 0.00 0.00 0.00 4.85
1105 1109 1.809271 CGCTGATTGTCCTCCATCCTG 60.809 57.143 0.00 0.00 0.00 3.86
1106 1110 0.467384 CGCTGATTGTCCTCCATCCT 59.533 55.000 0.00 0.00 0.00 3.24
1107 1111 0.533755 CCGCTGATTGTCCTCCATCC 60.534 60.000 0.00 0.00 0.00 3.51
1108 1112 0.533755 CCCGCTGATTGTCCTCCATC 60.534 60.000 0.00 0.00 0.00 3.51
1109 1113 1.528824 CCCGCTGATTGTCCTCCAT 59.471 57.895 0.00 0.00 0.00 3.41
1110 1114 2.989639 CCCGCTGATTGTCCTCCA 59.010 61.111 0.00 0.00 0.00 3.86
1111 1115 2.514824 GCCCGCTGATTGTCCTCC 60.515 66.667 0.00 0.00 0.00 4.30
1112 1116 2.892425 CGCCCGCTGATTGTCCTC 60.892 66.667 0.00 0.00 0.00 3.71
1128 1132 3.729906 GAAGATTGCTGCTGCCGCG 62.730 63.158 13.47 0.00 39.65 6.46
1129 1133 2.101770 GAAGATTGCTGCTGCCGC 59.898 61.111 13.47 9.23 38.71 6.53
1130 1134 2.102438 TCGAAGATTGCTGCTGCCG 61.102 57.895 13.47 8.11 38.71 5.69
1131 1135 1.427020 GTCGAAGATTGCTGCTGCC 59.573 57.895 13.47 0.00 40.67 4.85
1132 1136 1.059994 CGTCGAAGATTGCTGCTGC 59.940 57.895 8.89 8.89 40.67 5.25
1133 1137 1.284657 ATCGTCGAAGATTGCTGCTG 58.715 50.000 8.12 0.00 40.67 4.41
1134 1138 2.015736 AATCGTCGAAGATTGCTGCT 57.984 45.000 23.08 0.72 40.67 4.24
1140 1144 6.953743 CGTAATGAAAACAATCGTCGAAGATT 59.046 34.615 19.09 19.09 40.67 2.40
1141 1145 6.466812 CGTAATGAAAACAATCGTCGAAGAT 58.533 36.000 8.12 8.12 40.67 2.40
1142 1146 5.666913 GCGTAATGAAAACAATCGTCGAAGA 60.667 40.000 2.86 2.86 0.00 2.87
1143 1147 4.487408 GCGTAATGAAAACAATCGTCGAAG 59.513 41.667 0.00 0.00 0.00 3.79
1144 1148 4.150980 AGCGTAATGAAAACAATCGTCGAA 59.849 37.500 0.00 0.00 0.00 3.71
1145 1149 3.676172 AGCGTAATGAAAACAATCGTCGA 59.324 39.130 0.00 0.00 0.00 4.20
1146 1150 3.986128 AGCGTAATGAAAACAATCGTCG 58.014 40.909 0.00 0.00 0.00 5.12
1147 1151 5.058008 CACAAGCGTAATGAAAACAATCGTC 59.942 40.000 0.00 0.00 0.00 4.20
1148 1152 4.909305 CACAAGCGTAATGAAAACAATCGT 59.091 37.500 0.00 0.00 0.00 3.73
1149 1153 5.143660 TCACAAGCGTAATGAAAACAATCG 58.856 37.500 0.00 0.00 0.00 3.34
1150 1154 7.566858 AATCACAAGCGTAATGAAAACAATC 57.433 32.000 0.00 0.00 0.00 2.67
1151 1155 7.945033 AAATCACAAGCGTAATGAAAACAAT 57.055 28.000 0.00 0.00 0.00 2.71
1152 1156 7.763172 AAAATCACAAGCGTAATGAAAACAA 57.237 28.000 0.00 0.00 0.00 2.83
1153 1157 8.132362 ACTAAAATCACAAGCGTAATGAAAACA 58.868 29.630 0.00 0.00 0.00 2.83
1154 1158 8.502161 ACTAAAATCACAAGCGTAATGAAAAC 57.498 30.769 0.00 0.00 0.00 2.43
1181 1185 9.926751 CTCTATTACAACGTTCGAATCTAGTAA 57.073 33.333 0.00 9.51 0.00 2.24
1182 1186 9.317936 TCTCTATTACAACGTTCGAATCTAGTA 57.682 33.333 0.00 0.31 0.00 1.82
1183 1187 8.206325 TCTCTATTACAACGTTCGAATCTAGT 57.794 34.615 0.00 1.32 0.00 2.57
1184 1188 9.160576 CTTCTCTATTACAACGTTCGAATCTAG 57.839 37.037 0.00 2.96 0.00 2.43
1185 1189 7.642978 GCTTCTCTATTACAACGTTCGAATCTA 59.357 37.037 0.00 0.00 0.00 1.98
1186 1190 6.472808 GCTTCTCTATTACAACGTTCGAATCT 59.527 38.462 0.00 0.00 0.00 2.40
1187 1191 6.252869 TGCTTCTCTATTACAACGTTCGAATC 59.747 38.462 0.00 0.00 0.00 2.52
1188 1192 6.097356 TGCTTCTCTATTACAACGTTCGAAT 58.903 36.000 0.00 3.56 0.00 3.34
1189 1193 5.463286 TGCTTCTCTATTACAACGTTCGAA 58.537 37.500 0.00 0.00 0.00 3.71
1190 1194 5.050644 TGCTTCTCTATTACAACGTTCGA 57.949 39.130 0.00 0.00 0.00 3.71
1191 1195 5.756950 TTGCTTCTCTATTACAACGTTCG 57.243 39.130 0.00 0.00 0.00 3.95
1194 1198 9.216117 ACTTTATTTGCTTCTCTATTACAACGT 57.784 29.630 0.00 0.00 0.00 3.99
1201 1205 9.844257 ATGAGCTACTTTATTTGCTTCTCTATT 57.156 29.630 0.00 0.00 35.76 1.73
1202 1206 9.270640 CATGAGCTACTTTATTTGCTTCTCTAT 57.729 33.333 0.00 0.00 35.76 1.98
1203 1207 8.478066 TCATGAGCTACTTTATTTGCTTCTCTA 58.522 33.333 0.00 0.00 35.76 2.43
1204 1208 7.334090 TCATGAGCTACTTTATTTGCTTCTCT 58.666 34.615 0.00 0.00 35.76 3.10
1205 1209 7.545362 TCATGAGCTACTTTATTTGCTTCTC 57.455 36.000 0.00 0.00 35.76 2.87
1206 1210 7.551035 CTCATGAGCTACTTTATTTGCTTCT 57.449 36.000 10.38 0.00 35.76 2.85
1239 1243 9.732130 ACAGAAGTCAAAGAAAATCTAGCTAAT 57.268 29.630 0.00 0.00 0.00 1.73
1240 1244 9.209175 GACAGAAGTCAAAGAAAATCTAGCTAA 57.791 33.333 0.00 0.00 44.34 3.09
1241 1245 8.764524 GACAGAAGTCAAAGAAAATCTAGCTA 57.235 34.615 0.00 0.00 44.34 3.32
1242 1246 7.665561 GACAGAAGTCAAAGAAAATCTAGCT 57.334 36.000 0.00 0.00 44.34 3.32
1253 1257 9.270104 GTTCCTCAAACCAGACAGAAGTCAAAG 62.270 44.444 0.00 0.00 38.33 2.77
1254 1258 7.572481 GTTCCTCAAACCAGACAGAAGTCAAA 61.572 42.308 0.00 0.00 38.33 2.69
1255 1259 6.145556 GTTCCTCAAACCAGACAGAAGTCAA 61.146 44.000 0.00 0.00 38.33 3.18
1256 1260 4.683400 GTTCCTCAAACCAGACAGAAGTCA 60.683 45.833 0.00 0.00 38.33 3.41
1257 1261 3.753294 TCCTCAAACCAGACAGAAGTC 57.247 47.619 0.00 0.00 45.31 3.01
1258 1262 3.809905 GTTCCTCAAACCAGACAGAAGT 58.190 45.455 0.00 0.00 31.20 3.01
1269 1273 5.407407 TCTCATCTACAGGTTCCTCAAAC 57.593 43.478 0.00 0.00 37.12 2.93
1270 1274 6.013379 ACAATCTCATCTACAGGTTCCTCAAA 60.013 38.462 0.00 0.00 0.00 2.69
1271 1275 5.485353 ACAATCTCATCTACAGGTTCCTCAA 59.515 40.000 0.00 0.00 0.00 3.02
1272 1276 5.026121 ACAATCTCATCTACAGGTTCCTCA 58.974 41.667 0.00 0.00 0.00 3.86
1273 1277 5.606348 ACAATCTCATCTACAGGTTCCTC 57.394 43.478 0.00 0.00 0.00 3.71
1274 1278 7.682787 ATTACAATCTCATCTACAGGTTCCT 57.317 36.000 0.00 0.00 0.00 3.36
1278 1282 9.386122 AGGATTATTACAATCTCATCTACAGGT 57.614 33.333 0.00 0.00 0.00 4.00
1279 1283 9.868277 GAGGATTATTACAATCTCATCTACAGG 57.132 37.037 0.00 0.00 0.00 4.00
1286 1290 9.212641 CGTTCATGAGGATTATTACAATCTCAT 57.787 33.333 0.00 0.00 31.25 2.90
1287 1291 8.421002 TCGTTCATGAGGATTATTACAATCTCA 58.579 33.333 0.00 0.00 0.00 3.27
1288 1292 8.818141 TCGTTCATGAGGATTATTACAATCTC 57.182 34.615 0.00 0.00 0.00 2.75
1289 1293 9.212641 CATCGTTCATGAGGATTATTACAATCT 57.787 33.333 8.22 0.00 33.80 2.40
1290 1294 8.993121 ACATCGTTCATGAGGATTATTACAATC 58.007 33.333 8.22 0.00 36.21 2.67
1291 1295 8.908786 ACATCGTTCATGAGGATTATTACAAT 57.091 30.769 8.22 0.00 36.21 2.71
1292 1296 9.256477 GTACATCGTTCATGAGGATTATTACAA 57.744 33.333 8.22 0.00 36.21 2.41
1293 1297 8.638873 AGTACATCGTTCATGAGGATTATTACA 58.361 33.333 8.22 0.00 36.21 2.41
1294 1298 9.477484 AAGTACATCGTTCATGAGGATTATTAC 57.523 33.333 8.22 9.58 36.21 1.89
1295 1299 9.692749 GAAGTACATCGTTCATGAGGATTATTA 57.307 33.333 8.22 0.48 36.21 0.98
1296 1300 8.424918 AGAAGTACATCGTTCATGAGGATTATT 58.575 33.333 8.22 3.02 36.21 1.40
1297 1301 7.957002 AGAAGTACATCGTTCATGAGGATTAT 58.043 34.615 8.22 4.08 36.21 1.28
1298 1302 7.348080 AGAAGTACATCGTTCATGAGGATTA 57.652 36.000 8.22 3.91 36.21 1.75
1299 1303 6.227298 AGAAGTACATCGTTCATGAGGATT 57.773 37.500 8.22 4.62 36.21 3.01
1300 1304 5.860941 AGAAGTACATCGTTCATGAGGAT 57.139 39.130 0.00 0.33 36.21 3.24
1301 1305 5.661056 AAGAAGTACATCGTTCATGAGGA 57.339 39.130 0.00 0.00 36.21 3.71
1302 1306 9.347934 GATATAAGAAGTACATCGTTCATGAGG 57.652 37.037 0.00 0.00 36.21 3.86
1358 1362 1.318576 CTCGGAGTTGCCACCTTTTT 58.681 50.000 0.00 0.00 35.94 1.94
1359 1363 0.537371 CCTCGGAGTTGCCACCTTTT 60.537 55.000 4.02 0.00 35.94 2.27
1360 1364 1.073199 CCTCGGAGTTGCCACCTTT 59.927 57.895 4.02 0.00 35.94 3.11
1361 1365 2.113243 GACCTCGGAGTTGCCACCTT 62.113 60.000 4.02 0.00 35.94 3.50
1362 1366 2.526873 ACCTCGGAGTTGCCACCT 60.527 61.111 4.02 0.00 35.94 4.00
1363 1367 1.255667 TAGACCTCGGAGTTGCCACC 61.256 60.000 4.02 0.00 35.94 4.61
1364 1368 0.108756 GTAGACCTCGGAGTTGCCAC 60.109 60.000 4.02 0.00 35.94 5.01
1365 1369 0.541063 TGTAGACCTCGGAGTTGCCA 60.541 55.000 4.02 0.00 35.94 4.92
1366 1370 0.606604 TTGTAGACCTCGGAGTTGCC 59.393 55.000 4.02 0.00 0.00 4.52
1367 1371 2.450609 TTTGTAGACCTCGGAGTTGC 57.549 50.000 4.02 0.00 0.00 4.17
1449 1453 3.817084 ACATGCCCTCACATTCGATTATG 59.183 43.478 0.00 0.00 0.00 1.90
1484 1488 2.059541 GACGTACACTGGAGCTTTGAC 58.940 52.381 0.00 0.00 0.00 3.18
1494 1498 4.112634 CACCATAATCCAGACGTACACTG 58.887 47.826 9.29 9.29 35.43 3.66
1495 1499 3.767673 ACACCATAATCCAGACGTACACT 59.232 43.478 0.00 0.00 0.00 3.55
1497 1501 4.675933 CGAACACCATAATCCAGACGTACA 60.676 45.833 0.00 0.00 0.00 2.90
1498 1502 3.795101 CGAACACCATAATCCAGACGTAC 59.205 47.826 0.00 0.00 0.00 3.67
1505 1509 3.454447 AGTGATCCGAACACCATAATCCA 59.546 43.478 5.24 0.00 38.82 3.41
1511 1515 2.224523 ACACAAGTGATCCGAACACCAT 60.225 45.455 7.28 0.00 38.82 3.55
1555 1560 1.203025 ACTTCGCGGATAGATAGGGGT 60.203 52.381 6.13 0.00 0.00 4.95
1557 1562 1.202582 CCACTTCGCGGATAGATAGGG 59.797 57.143 6.13 1.12 0.00 3.53
1559 1564 1.402984 GGCCACTTCGCGGATAGATAG 60.403 57.143 6.13 0.00 0.00 2.08
1617 1622 1.052617 GGACTCCTGCTTAGATCCCC 58.947 60.000 0.00 0.00 0.00 4.81
1622 1627 0.898326 TGCGTGGACTCCTGCTTAGA 60.898 55.000 12.35 0.00 0.00 2.10
1626 1631 2.267006 CATGCGTGGACTCCTGCT 59.733 61.111 12.35 0.00 0.00 4.24
1629 1634 0.322816 AATTGCATGCGTGGACTCCT 60.323 50.000 14.09 0.00 0.00 3.69
1638 1643 1.780806 TTGTTGGTCAATTGCATGCG 58.219 45.000 14.09 0.00 0.00 4.73
1669 1674 4.959839 AGAGAGAAATAAGAGGAGGACCAC 59.040 45.833 0.00 0.00 38.94 4.16
1674 1679 7.601705 ATGAAGAGAGAGAAATAAGAGGAGG 57.398 40.000 0.00 0.00 0.00 4.30
1678 1683 9.932207 ATGCATATGAAGAGAGAGAAATAAGAG 57.068 33.333 6.97 0.00 0.00 2.85
1705 1712 0.820871 AGAGAGAGGACATGCGAACC 59.179 55.000 0.00 0.00 0.00 3.62
1734 1741 5.811190 TGGGATATTTTGGTATGGTATCCG 58.189 41.667 0.00 0.00 40.97 4.18
1735 1742 5.652452 GCTGGGATATTTTGGTATGGTATCC 59.348 44.000 0.00 0.00 39.90 2.59
1736 1743 6.151144 GTGCTGGGATATTTTGGTATGGTATC 59.849 42.308 0.00 0.00 0.00 2.24
1743 1750 3.636300 GCATGTGCTGGGATATTTTGGTA 59.364 43.478 0.00 0.00 38.21 3.25
1748 1755 4.733165 ACTATGCATGTGCTGGGATATTT 58.267 39.130 10.16 0.00 42.66 1.40
1765 1772 5.163290 GGAAAGAGAGTAAAGGGGGACTATG 60.163 48.000 0.00 0.00 0.00 2.23
1772 1779 3.587506 TGGAAGGAAAGAGAGTAAAGGGG 59.412 47.826 0.00 0.00 0.00 4.79
1777 1784 4.905456 TCTGGTTGGAAGGAAAGAGAGTAA 59.095 41.667 0.00 0.00 0.00 2.24
1786 1793 7.695055 TCATAAATTAGTCTGGTTGGAAGGAA 58.305 34.615 0.00 0.00 0.00 3.36
1788 1795 7.938140 TTCATAAATTAGTCTGGTTGGAAGG 57.062 36.000 0.00 0.00 0.00 3.46
1819 1826 0.924823 AATGCAGAAGGGAGGCATCT 59.075 50.000 0.00 0.00 46.77 2.90
1831 1838 2.509131 TGGTCCATGGACATAATGCAGA 59.491 45.455 38.83 13.19 46.20 4.26
1833 1840 3.598693 ATGGTCCATGGACATAATGCA 57.401 42.857 38.83 28.09 46.20 3.96
1837 1844 4.724293 TCCTGTTATGGTCCATGGACATAA 59.276 41.667 38.83 32.35 46.20 1.90
1838 1845 4.102524 GTCCTGTTATGGTCCATGGACATA 59.897 45.833 38.83 29.68 46.20 2.29
1844 1851 4.155063 TCATGTCCTGTTATGGTCCATG 57.845 45.455 15.10 0.00 38.08 3.66
1845 1852 4.860802 TTCATGTCCTGTTATGGTCCAT 57.139 40.909 9.88 9.88 0.00 3.41
1854 1861 7.225145 CACAAATGTTCATTTTCATGTCCTGTT 59.775 33.333 7.88 0.00 0.00 3.16
1864 1871 4.378616 CGGACGTCACAAATGTTCATTTTC 59.621 41.667 18.91 3.36 0.00 2.29
1875 1882 2.203401 CCAGTAAACGGACGTCACAAA 58.797 47.619 18.91 0.00 0.00 2.83
1882 1889 0.319211 TGCTGACCAGTAAACGGACG 60.319 55.000 0.00 0.00 0.00 4.79
1901 1908 4.785346 ACTGTATCAGGGCATCTTCAAT 57.215 40.909 1.90 0.00 35.51 2.57
1903 1910 3.388024 GGTACTGTATCAGGGCATCTTCA 59.612 47.826 0.00 0.00 35.51 3.02
1905 1912 3.384168 TGGTACTGTATCAGGGCATCTT 58.616 45.455 0.00 0.00 35.51 2.40
1914 1921 7.334171 GCAATGTATATGCATGGTACTGTATCA 59.666 37.037 10.16 2.81 43.29 2.15
1933 1940 1.804151 GTTCCAACTCGCTGCAATGTA 59.196 47.619 0.00 0.00 0.00 2.29
1940 1947 1.081892 CATCCAGTTCCAACTCGCTG 58.918 55.000 0.00 0.00 37.08 5.18
1987 1994 7.171678 CACTCACACGAGATATACTACAGATGA 59.828 40.741 0.00 0.00 42.34 2.92
2008 2015 6.768381 TGGTAATTGTTGTTGTATGTCACTCA 59.232 34.615 0.00 0.00 0.00 3.41
2012 2019 6.944234 TGTGGTAATTGTTGTTGTATGTCA 57.056 33.333 0.00 0.00 0.00 3.58
2014 2021 7.918562 GTCTTTGTGGTAATTGTTGTTGTATGT 59.081 33.333 0.00 0.00 0.00 2.29
2026 2033 5.820947 ACAAGAGAACGTCTTTGTGGTAATT 59.179 36.000 0.00 0.00 43.54 1.40
2099 2106 2.311463 GTCATAGCAGTCCTGAGGCTA 58.689 52.381 0.00 0.00 43.55 3.93
2108 2115 6.226052 TGTTCCATATGATGTCATAGCAGTC 58.774 40.000 3.65 1.49 41.58 3.51
2109 2116 6.178607 TGTTCCATATGATGTCATAGCAGT 57.821 37.500 3.65 0.00 41.58 4.40
2110 2117 6.228995 ACTGTTCCATATGATGTCATAGCAG 58.771 40.000 3.65 11.56 41.58 4.24
2147 2155 2.309528 TGCTACAGAATTAGGGCGTG 57.690 50.000 0.00 0.00 0.00 5.34
2148 2156 2.500098 TCTTGCTACAGAATTAGGGCGT 59.500 45.455 0.00 0.00 0.00 5.68
2149 2157 3.179443 TCTTGCTACAGAATTAGGGCG 57.821 47.619 0.00 0.00 0.00 6.13
2150 2158 6.292150 AGTAATCTTGCTACAGAATTAGGGC 58.708 40.000 0.00 0.00 0.00 5.19
2151 2159 7.987458 TGAAGTAATCTTGCTACAGAATTAGGG 59.013 37.037 0.00 0.00 33.64 3.53
2152 2160 8.948631 TGAAGTAATCTTGCTACAGAATTAGG 57.051 34.615 0.00 0.00 33.64 2.69
2155 2163 8.940952 GTCTTGAAGTAATCTTGCTACAGAATT 58.059 33.333 0.00 0.00 33.64 2.17
2156 2164 8.317679 AGTCTTGAAGTAATCTTGCTACAGAAT 58.682 33.333 0.00 0.00 33.64 2.40
2157 2165 7.600375 CAGTCTTGAAGTAATCTTGCTACAGAA 59.400 37.037 0.00 0.00 33.64 3.02
2158 2166 7.093354 CAGTCTTGAAGTAATCTTGCTACAGA 58.907 38.462 0.00 0.00 33.64 3.41
2159 2167 6.183360 GCAGTCTTGAAGTAATCTTGCTACAG 60.183 42.308 0.00 0.00 33.64 2.74
2160 2168 5.639506 GCAGTCTTGAAGTAATCTTGCTACA 59.360 40.000 0.00 0.00 33.64 2.74
2161 2169 5.064071 GGCAGTCTTGAAGTAATCTTGCTAC 59.936 44.000 0.00 0.00 33.64 3.58
2162 2170 5.178797 GGCAGTCTTGAAGTAATCTTGCTA 58.821 41.667 0.00 0.00 33.64 3.49
2163 2171 4.006319 GGCAGTCTTGAAGTAATCTTGCT 58.994 43.478 0.00 0.00 33.64 3.91
2164 2172 3.181516 CGGCAGTCTTGAAGTAATCTTGC 60.182 47.826 0.00 0.00 33.64 4.01
2165 2173 3.997021 ACGGCAGTCTTGAAGTAATCTTG 59.003 43.478 0.00 0.00 33.64 3.02
2166 2174 3.997021 CACGGCAGTCTTGAAGTAATCTT 59.003 43.478 0.00 0.00 36.51 2.40
2167 2175 3.258372 TCACGGCAGTCTTGAAGTAATCT 59.742 43.478 0.00 0.00 0.00 2.40
2168 2176 3.585862 TCACGGCAGTCTTGAAGTAATC 58.414 45.455 0.00 0.00 0.00 1.75
2169 2177 3.678056 TCACGGCAGTCTTGAAGTAAT 57.322 42.857 0.00 0.00 0.00 1.89
2170 2178 3.678056 ATCACGGCAGTCTTGAAGTAA 57.322 42.857 0.00 0.00 0.00 2.24
2171 2179 5.339008 AATATCACGGCAGTCTTGAAGTA 57.661 39.130 0.00 0.00 0.00 2.24
2172 2180 3.895232 ATATCACGGCAGTCTTGAAGT 57.105 42.857 0.00 0.00 0.00 3.01
2173 2181 8.438513 CAATATAATATCACGGCAGTCTTGAAG 58.561 37.037 0.00 0.00 0.00 3.02
2174 2182 8.147704 TCAATATAATATCACGGCAGTCTTGAA 58.852 33.333 0.00 0.00 0.00 2.69
2175 2183 7.666623 TCAATATAATATCACGGCAGTCTTGA 58.333 34.615 0.00 0.00 0.00 3.02
2176 2184 7.889589 TCAATATAATATCACGGCAGTCTTG 57.110 36.000 0.00 0.00 0.00 3.02
2177 2185 7.116376 CGTTCAATATAATATCACGGCAGTCTT 59.884 37.037 0.00 0.00 0.00 3.01
2178 2186 6.586463 CGTTCAATATAATATCACGGCAGTCT 59.414 38.462 0.00 0.00 0.00 3.24
2179 2187 6.183360 CCGTTCAATATAATATCACGGCAGTC 60.183 42.308 0.00 0.00 39.29 3.51
2180 2188 5.637810 CCGTTCAATATAATATCACGGCAGT 59.362 40.000 0.00 0.00 39.29 4.40
2181 2189 6.094739 CCGTTCAATATAATATCACGGCAG 57.905 41.667 0.00 0.00 39.29 4.85
2184 2192 6.721571 AAGCCGTTCAATATAATATCACGG 57.278 37.500 3.47 3.47 46.75 4.94
2185 2193 9.741168 CTTAAAGCCGTTCAATATAATATCACG 57.259 33.333 0.00 0.00 0.00 4.35
2190 2198 9.502091 AGCATCTTAAAGCCGTTCAATATAATA 57.498 29.630 0.00 0.00 0.00 0.98
2191 2199 8.396272 AGCATCTTAAAGCCGTTCAATATAAT 57.604 30.769 0.00 0.00 0.00 1.28
2192 2200 7.497579 TGAGCATCTTAAAGCCGTTCAATATAA 59.502 33.333 0.00 0.00 34.92 0.98
2193 2201 6.989759 TGAGCATCTTAAAGCCGTTCAATATA 59.010 34.615 0.00 0.00 34.92 0.86
2194 2202 5.822519 TGAGCATCTTAAAGCCGTTCAATAT 59.177 36.000 0.00 0.00 34.92 1.28
2195 2203 5.182487 TGAGCATCTTAAAGCCGTTCAATA 58.818 37.500 0.00 0.00 34.92 1.90
2196 2204 4.009675 TGAGCATCTTAAAGCCGTTCAAT 58.990 39.130 0.00 0.00 34.92 2.57
2197 2205 3.407698 TGAGCATCTTAAAGCCGTTCAA 58.592 40.909 0.00 0.00 34.92 2.69
2198 2206 3.052455 TGAGCATCTTAAAGCCGTTCA 57.948 42.857 0.00 0.00 34.92 3.18
2199 2207 3.684788 TCTTGAGCATCTTAAAGCCGTTC 59.315 43.478 0.00 0.00 34.92 3.95
2200 2208 3.437049 GTCTTGAGCATCTTAAAGCCGTT 59.563 43.478 0.00 0.00 34.92 4.44
2201 2209 3.003480 GTCTTGAGCATCTTAAAGCCGT 58.997 45.455 0.00 0.00 34.92 5.68
2202 2210 3.063180 CAGTCTTGAGCATCTTAAAGCCG 59.937 47.826 0.00 0.00 34.92 5.52
2203 2211 3.181502 GCAGTCTTGAGCATCTTAAAGCC 60.182 47.826 0.00 0.00 34.92 4.35
2204 2212 3.688673 AGCAGTCTTGAGCATCTTAAAGC 59.311 43.478 0.00 0.00 34.92 3.51
2205 2213 5.410746 TGAAGCAGTCTTGAGCATCTTAAAG 59.589 40.000 0.00 0.00 34.92 1.85
2206 2214 5.308014 TGAAGCAGTCTTGAGCATCTTAAA 58.692 37.500 0.00 0.00 34.92 1.52
2207 2215 4.898320 TGAAGCAGTCTTGAGCATCTTAA 58.102 39.130 0.00 0.00 34.92 1.85
2208 2216 4.541973 TGAAGCAGTCTTGAGCATCTTA 57.458 40.909 0.00 0.00 34.92 2.10
2209 2217 3.413846 TGAAGCAGTCTTGAGCATCTT 57.586 42.857 0.00 0.00 34.92 2.40
2210 2218 3.007723 TCTTGAAGCAGTCTTGAGCATCT 59.992 43.478 0.00 0.00 34.92 2.90
2211 2219 3.332919 TCTTGAAGCAGTCTTGAGCATC 58.667 45.455 0.00 0.00 31.48 3.91
2212 2220 3.413846 TCTTGAAGCAGTCTTGAGCAT 57.586 42.857 0.00 0.00 31.48 3.79
2213 2221 2.916702 TCTTGAAGCAGTCTTGAGCA 57.083 45.000 0.00 0.00 31.48 4.26
2214 2222 3.670091 GCAATCTTGAAGCAGTCTTGAGC 60.670 47.826 0.00 0.00 31.48 4.26
2215 2223 3.119919 GGCAATCTTGAAGCAGTCTTGAG 60.120 47.826 0.00 0.00 31.48 3.02
2216 2224 2.816087 GGCAATCTTGAAGCAGTCTTGA 59.184 45.455 0.00 0.00 31.48 3.02
2217 2225 2.413765 CGGCAATCTTGAAGCAGTCTTG 60.414 50.000 0.00 0.00 31.48 3.02
2218 2226 1.808945 CGGCAATCTTGAAGCAGTCTT 59.191 47.619 0.00 0.00 34.68 3.01
2219 2227 1.446907 CGGCAATCTTGAAGCAGTCT 58.553 50.000 0.00 0.00 0.00 3.24
2220 2228 0.179179 GCGGCAATCTTGAAGCAGTC 60.179 55.000 0.00 0.00 34.06 3.51
2221 2229 0.890542 TGCGGCAATCTTGAAGCAGT 60.891 50.000 0.00 0.00 37.25 4.40
2222 2230 0.454600 ATGCGGCAATCTTGAAGCAG 59.545 50.000 6.82 0.00 42.23 4.24
2223 2231 0.452987 GATGCGGCAATCTTGAAGCA 59.547 50.000 6.82 12.66 42.77 3.91
2224 2232 0.737219 AGATGCGGCAATCTTGAAGC 59.263 50.000 6.82 0.00 32.88 3.86
2225 2233 4.825546 ATTAGATGCGGCAATCTTGAAG 57.174 40.909 6.82 0.00 37.98 3.02
2226 2234 6.017934 GTCTTATTAGATGCGGCAATCTTGAA 60.018 38.462 6.82 3.83 37.98 2.69
2227 2235 5.466728 GTCTTATTAGATGCGGCAATCTTGA 59.533 40.000 6.82 4.17 37.98 3.02
2228 2236 5.468072 AGTCTTATTAGATGCGGCAATCTTG 59.532 40.000 6.82 0.00 37.98 3.02
2229 2237 5.468072 CAGTCTTATTAGATGCGGCAATCTT 59.532 40.000 6.82 0.00 37.98 2.40
2230 2238 4.993584 CAGTCTTATTAGATGCGGCAATCT 59.006 41.667 6.82 12.75 40.12 2.40
2231 2239 4.377841 GCAGTCTTATTAGATGCGGCAATC 60.378 45.833 6.82 5.55 31.86 2.67
2232 2240 3.499918 GCAGTCTTATTAGATGCGGCAAT 59.500 43.478 6.82 0.92 31.86 3.56
2233 2241 2.872245 GCAGTCTTATTAGATGCGGCAA 59.128 45.455 6.82 0.00 31.86 4.52
2234 2242 2.483876 GCAGTCTTATTAGATGCGGCA 58.516 47.619 4.58 4.58 31.86 5.69
2235 2243 1.801178 GGCAGTCTTATTAGATGCGGC 59.199 52.381 0.00 0.00 36.56 6.53
2236 2244 2.061773 CGGCAGTCTTATTAGATGCGG 58.938 52.381 8.83 8.54 36.56 5.69
2237 2245 3.013276 TCGGCAGTCTTATTAGATGCG 57.987 47.619 8.83 0.00 36.56 4.73
2238 2246 4.560128 TCATCGGCAGTCTTATTAGATGC 58.440 43.478 7.28 7.28 35.75 3.91
2239 2247 5.579904 CCATCATCGGCAGTCTTATTAGATG 59.420 44.000 0.00 0.00 36.35 2.90
2240 2248 5.481824 TCCATCATCGGCAGTCTTATTAGAT 59.518 40.000 0.00 0.00 31.86 1.98
2241 2249 4.832823 TCCATCATCGGCAGTCTTATTAGA 59.167 41.667 0.00 0.00 0.00 2.10
2242 2250 4.926238 GTCCATCATCGGCAGTCTTATTAG 59.074 45.833 0.00 0.00 0.00 1.73
2243 2251 4.343814 TGTCCATCATCGGCAGTCTTATTA 59.656 41.667 0.00 0.00 0.00 0.98
2244 2252 3.134623 TGTCCATCATCGGCAGTCTTATT 59.865 43.478 0.00 0.00 0.00 1.40
2245 2253 2.700371 TGTCCATCATCGGCAGTCTTAT 59.300 45.455 0.00 0.00 0.00 1.73
2246 2254 2.107366 TGTCCATCATCGGCAGTCTTA 58.893 47.619 0.00 0.00 0.00 2.10
2247 2255 0.904649 TGTCCATCATCGGCAGTCTT 59.095 50.000 0.00 0.00 0.00 3.01
2248 2256 0.176680 GTGTCCATCATCGGCAGTCT 59.823 55.000 0.00 0.00 0.00 3.24
2249 2257 0.811616 GGTGTCCATCATCGGCAGTC 60.812 60.000 0.00 0.00 0.00 3.51
2250 2258 1.221840 GGTGTCCATCATCGGCAGT 59.778 57.895 0.00 0.00 0.00 4.40
2251 2259 0.812811 CTGGTGTCCATCATCGGCAG 60.813 60.000 0.00 0.00 30.82 4.85
2252 2260 1.221566 CTGGTGTCCATCATCGGCA 59.778 57.895 0.00 0.00 30.82 5.69
2253 2261 0.392998 AACTGGTGTCCATCATCGGC 60.393 55.000 0.00 0.00 37.05 5.54
2254 2262 2.113860 AAACTGGTGTCCATCATCGG 57.886 50.000 0.00 0.00 39.31 4.18
2255 2263 2.414559 GCAAAACTGGTGTCCATCATCG 60.415 50.000 0.00 0.00 30.82 3.84
2256 2264 2.821969 AGCAAAACTGGTGTCCATCATC 59.178 45.455 0.00 0.00 30.82 2.92
2257 2265 2.880443 AGCAAAACTGGTGTCCATCAT 58.120 42.857 0.00 0.00 30.82 2.45
2258 2266 2.363306 AGCAAAACTGGTGTCCATCA 57.637 45.000 0.00 0.00 30.82 3.07
2259 2267 2.159627 CGTAGCAAAACTGGTGTCCATC 59.840 50.000 0.00 0.00 30.82 3.51
2260 2268 2.151202 CGTAGCAAAACTGGTGTCCAT 58.849 47.619 0.00 0.00 30.82 3.41
2261 2269 1.134340 ACGTAGCAAAACTGGTGTCCA 60.134 47.619 0.00 0.00 0.00 4.02
2262 2270 1.263217 CACGTAGCAAAACTGGTGTCC 59.737 52.381 0.00 0.00 32.47 4.02
2263 2271 1.937899 ACACGTAGCAAAACTGGTGTC 59.062 47.619 0.00 0.00 41.02 3.67
2264 2272 2.032680 ACACGTAGCAAAACTGGTGT 57.967 45.000 0.00 0.00 40.48 4.16
2265 2273 4.539509 TTTACACGTAGCAAAACTGGTG 57.460 40.909 0.00 0.00 39.04 4.17
2266 2274 4.577283 ACATTTACACGTAGCAAAACTGGT 59.423 37.500 0.00 0.00 0.00 4.00
2267 2275 5.049680 AGACATTTACACGTAGCAAAACTGG 60.050 40.000 0.00 0.00 0.00 4.00
2268 2276 5.985781 AGACATTTACACGTAGCAAAACTG 58.014 37.500 0.00 0.00 0.00 3.16
2269 2277 5.756347 TGAGACATTTACACGTAGCAAAACT 59.244 36.000 0.00 0.00 0.00 2.66
2270 2278 5.844396 GTGAGACATTTACACGTAGCAAAAC 59.156 40.000 0.00 0.00 0.00 2.43
2271 2279 5.756347 AGTGAGACATTTACACGTAGCAAAA 59.244 36.000 0.00 0.00 39.19 2.44
2272 2280 5.176774 CAGTGAGACATTTACACGTAGCAAA 59.823 40.000 0.00 0.00 39.19 3.68
2273 2281 4.684242 CAGTGAGACATTTACACGTAGCAA 59.316 41.667 0.00 0.00 39.19 3.91
2274 2282 4.022676 TCAGTGAGACATTTACACGTAGCA 60.023 41.667 0.00 0.00 39.19 3.49
2275 2283 4.482386 TCAGTGAGACATTTACACGTAGC 58.518 43.478 0.00 0.00 39.19 3.58
2276 2284 6.322491 TCATCAGTGAGACATTTACACGTAG 58.678 40.000 0.00 0.00 39.19 3.51
2277 2285 6.262193 TCATCAGTGAGACATTTACACGTA 57.738 37.500 0.00 0.00 39.19 3.57
2278 2286 5.134202 TCATCAGTGAGACATTTACACGT 57.866 39.130 0.00 0.00 39.19 4.49
2279 2287 6.466308 TTTCATCAGTGAGACATTTACACG 57.534 37.500 0.00 0.00 39.19 4.49
2319 2327 2.311124 GAAGTATAGGCACGCCTTGT 57.689 50.000 17.25 8.32 45.70 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.