Multiple sequence alignment - TraesCS2A01G100800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G100800 chr2A 100.000 5190 0 0 1 5190 53791109 53785920 0.000000e+00 9585.0
1 TraesCS2A01G100800 chr2D 95.003 3382 98 14 1749 5079 52234017 52230656 0.000000e+00 5243.0
2 TraesCS2A01G100800 chr2D 94.984 917 42 4 855 1770 52234993 52234080 0.000000e+00 1435.0
3 TraesCS2A01G100800 chr2D 88.350 309 28 6 2 303 52235873 52235566 1.060000e-96 364.0
4 TraesCS2A01G100800 chr2B 94.570 1989 87 12 2547 4534 81761851 81759883 0.000000e+00 3055.0
5 TraesCS2A01G100800 chr2B 92.692 1560 79 17 855 2400 81763381 81761843 0.000000e+00 2217.0
6 TraesCS2A01G100800 chr2B 89.957 468 18 14 4618 5079 81759737 81759293 1.250000e-160 577.0
7 TraesCS2A01G100800 chr6D 88.945 199 10 7 304 502 87284374 87284188 8.690000e-58 235.0
8 TraesCS2A01G100800 chr6B 88.614 202 11 2 301 502 100707834 100708023 8.690000e-58 235.0
9 TraesCS2A01G100800 chr6B 88.614 202 11 2 301 502 100743087 100743276 8.690000e-58 235.0
10 TraesCS2A01G100800 chr6B 88.060 201 12 6 301 501 716584418 716584606 1.450000e-55 228.0
11 TraesCS2A01G100800 chr7B 88.119 202 12 2 301 502 680159118 680159307 4.040000e-56 230.0
12 TraesCS2A01G100800 chr7B 86.139 202 16 6 301 502 39614813 39615002 1.890000e-49 207.0
13 TraesCS2A01G100800 chr7B 91.071 56 3 2 86 139 468942884 468942829 2.000000e-09 75.0
14 TraesCS2A01G100800 chr7B 92.308 52 4 0 88 139 667118506 667118455 2.000000e-09 75.0
15 TraesCS2A01G100800 chr7B 90.909 55 4 1 800 854 473399791 473399844 7.210000e-09 73.1
16 TraesCS2A01G100800 chr5B 87.500 200 13 2 304 503 405520080 405519893 2.430000e-53 220.0
17 TraesCS2A01G100800 chr5B 85.572 201 17 8 301 501 34430546 34430734 3.170000e-47 200.0
18 TraesCS2A01G100800 chr4B 87.437 199 13 2 304 502 483949379 483949193 8.750000e-53 219.0
19 TraesCS2A01G100800 chr4A 85.427 199 17 4 304 502 627351745 627351559 4.100000e-46 196.0
20 TraesCS2A01G100800 chr6A 84.500 200 17 5 304 502 15828112 15827926 8.870000e-43 185.0
21 TraesCS2A01G100800 chr3B 82.927 205 21 7 300 503 24746503 24746312 6.910000e-39 172.0
22 TraesCS2A01G100800 chr7A 82.759 203 21 5 301 502 194178849 194178660 8.940000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G100800 chr2A 53785920 53791109 5189 True 9585.000000 9585 100.000000 1 5190 1 chr2A.!!$R1 5189
1 TraesCS2A01G100800 chr2D 52230656 52235873 5217 True 2347.333333 5243 92.779000 2 5079 3 chr2D.!!$R1 5077
2 TraesCS2A01G100800 chr2B 81759293 81763381 4088 True 1949.666667 3055 92.406333 855 5079 3 chr2B.!!$R1 4224

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 88 0.034756 CCACGGACACATGAGAACCA 59.965 55.0 0.00 0.0 0.00 3.67 F
1155 1446 0.036294 CTCCCCCTTTCAGTTCGTCC 60.036 60.0 0.00 0.0 0.00 4.79 F
2019 2408 0.029834 GGTCCGCAGCAGCAATTATG 59.970 55.0 0.82 0.0 42.27 1.90 F
2075 2464 0.955919 GTGCCCACTGTGCTTAGTCC 60.956 60.0 1.29 0.0 0.00 3.85 F
3593 3992 0.834612 TATACCCTGCTTTCCCGGTG 59.165 55.0 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1350 1643 0.040958 GCCGAAGCGATTATGCCTTG 60.041 55.0 0.00 0.00 34.65 3.61 R
2445 2839 0.033642 TGGACGGTGTGATACGCAAA 59.966 50.0 0.00 0.00 0.00 3.68 R
3267 3666 0.259065 TCCAGGAGCGGATAGACTGT 59.741 55.0 0.00 0.00 0.00 3.55 R
3776 4175 0.947244 CAGATGGAAGGCGGCATTAC 59.053 55.0 13.08 1.95 0.00 1.89 R
5110 5595 0.033208 GCCCAACCTCCAATGGATCA 60.033 55.0 0.87 0.00 39.12 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 71 6.122277 AGTCTTTTTGATCTTGTTCACTCCA 58.878 36.000 0.00 0.00 0.00 3.86
70 72 6.038714 AGTCTTTTTGATCTTGTTCACTCCAC 59.961 38.462 0.00 0.00 0.00 4.02
85 87 0.320374 TCCACGGACACATGAGAACC 59.680 55.000 0.00 0.35 0.00 3.62
86 88 0.034756 CCACGGACACATGAGAACCA 59.965 55.000 0.00 0.00 0.00 3.67
151 155 5.582269 TGATTTAGAAGAAGATCTGTTGCCG 59.418 40.000 0.00 0.00 0.00 5.69
161 165 2.799126 TCTGTTGCCGGGTTAATCAT 57.201 45.000 2.18 0.00 0.00 2.45
193 198 5.220854 CGGACAAAAAGATACATCCATGACC 60.221 44.000 0.00 0.00 0.00 4.02
206 211 1.137086 CCATGACCAAGACTACTCCCG 59.863 57.143 0.00 0.00 0.00 5.14
217 222 2.149803 CTACTCCCGCCAACGACACA 62.150 60.000 0.00 0.00 43.93 3.72
220 225 2.358125 CCCGCCAACGACACATCA 60.358 61.111 0.00 0.00 43.93 3.07
228 233 3.304659 GCCAACGACACATCAAACTCAAT 60.305 43.478 0.00 0.00 0.00 2.57
239 244 6.144402 CACATCAAACTCAATAAAAGCACACC 59.856 38.462 0.00 0.00 0.00 4.16
241 246 5.587289 TCAAACTCAATAAAAGCACACCAC 58.413 37.500 0.00 0.00 0.00 4.16
243 248 3.832527 ACTCAATAAAAGCACACCACCT 58.167 40.909 0.00 0.00 0.00 4.00
244 249 3.821033 ACTCAATAAAAGCACACCACCTC 59.179 43.478 0.00 0.00 0.00 3.85
266 272 2.255316 CAAACACAAACACACGGGAAC 58.745 47.619 0.00 0.00 0.00 3.62
284 291 0.919710 ACCTACCCCATCTGAAAGCC 59.080 55.000 0.00 0.00 0.00 4.35
296 303 2.029290 TCTGAAAGCCGACTTACCAGAC 60.029 50.000 10.81 0.00 39.13 3.51
297 304 1.689813 TGAAAGCCGACTTACCAGACA 59.310 47.619 0.00 0.00 34.05 3.41
298 305 2.103432 TGAAAGCCGACTTACCAGACAA 59.897 45.455 0.00 0.00 34.05 3.18
299 306 2.922740 AAGCCGACTTACCAGACAAA 57.077 45.000 0.00 0.00 33.13 2.83
300 307 2.165319 AGCCGACTTACCAGACAAAC 57.835 50.000 0.00 0.00 0.00 2.93
301 308 1.414919 AGCCGACTTACCAGACAAACA 59.585 47.619 0.00 0.00 0.00 2.83
302 309 2.158871 AGCCGACTTACCAGACAAACAA 60.159 45.455 0.00 0.00 0.00 2.83
303 310 2.812011 GCCGACTTACCAGACAAACAAT 59.188 45.455 0.00 0.00 0.00 2.71
304 311 3.364964 GCCGACTTACCAGACAAACAATG 60.365 47.826 0.00 0.00 0.00 2.82
305 312 3.188460 CCGACTTACCAGACAAACAATGG 59.812 47.826 0.00 0.00 40.10 3.16
306 313 3.364964 CGACTTACCAGACAAACAATGGC 60.365 47.826 0.00 0.00 37.64 4.40
307 314 2.552315 ACTTACCAGACAAACAATGGCG 59.448 45.455 0.00 0.00 44.22 5.69
308 315 2.552599 TACCAGACAAACAATGGCGA 57.447 45.000 0.00 0.00 44.22 5.54
309 316 1.909700 ACCAGACAAACAATGGCGAT 58.090 45.000 0.00 0.00 44.22 4.58
310 317 2.238521 ACCAGACAAACAATGGCGATT 58.761 42.857 0.00 0.00 44.22 3.34
311 318 2.228822 ACCAGACAAACAATGGCGATTC 59.771 45.455 0.00 0.00 44.22 2.52
312 319 2.489329 CCAGACAAACAATGGCGATTCT 59.511 45.455 0.00 0.00 44.22 2.40
313 320 3.689161 CCAGACAAACAATGGCGATTCTA 59.311 43.478 0.00 0.00 44.22 2.10
314 321 4.437390 CCAGACAAACAATGGCGATTCTAC 60.437 45.833 0.00 0.00 44.22 2.59
315 322 3.689649 AGACAAACAATGGCGATTCTACC 59.310 43.478 0.00 0.00 44.22 3.18
316 323 2.418628 ACAAACAATGGCGATTCTACCG 59.581 45.455 0.00 0.00 0.00 4.02
317 324 1.663695 AACAATGGCGATTCTACCGG 58.336 50.000 0.00 0.00 0.00 5.28
318 325 0.179056 ACAATGGCGATTCTACCGGG 60.179 55.000 6.32 0.00 0.00 5.73
319 326 1.227853 AATGGCGATTCTACCGGGC 60.228 57.895 6.32 0.00 0.00 6.13
320 327 1.978455 AATGGCGATTCTACCGGGCA 61.978 55.000 6.32 0.00 39.37 5.36
321 328 1.768684 ATGGCGATTCTACCGGGCAT 61.769 55.000 6.32 0.00 40.35 4.40
322 329 1.961277 GGCGATTCTACCGGGCATG 60.961 63.158 6.32 0.00 0.00 4.06
323 330 2.607892 GCGATTCTACCGGGCATGC 61.608 63.158 9.90 9.90 0.00 4.06
324 331 1.069765 CGATTCTACCGGGCATGCT 59.930 57.895 18.92 0.00 0.00 3.79
325 332 0.532862 CGATTCTACCGGGCATGCTT 60.533 55.000 18.92 2.26 0.00 3.91
326 333 1.230324 GATTCTACCGGGCATGCTTC 58.770 55.000 18.92 9.48 0.00 3.86
327 334 0.546122 ATTCTACCGGGCATGCTTCA 59.454 50.000 18.92 0.00 0.00 3.02
328 335 0.326595 TTCTACCGGGCATGCTTCAA 59.673 50.000 18.92 0.00 0.00 2.69
329 336 0.392461 TCTACCGGGCATGCTTCAAC 60.392 55.000 18.92 0.00 0.00 3.18
330 337 0.676466 CTACCGGGCATGCTTCAACA 60.676 55.000 18.92 0.00 0.00 3.33
331 338 0.676466 TACCGGGCATGCTTCAACAG 60.676 55.000 18.92 0.59 0.00 3.16
332 339 2.703798 CCGGGCATGCTTCAACAGG 61.704 63.158 18.92 6.66 0.00 4.00
333 340 2.575461 GGGCATGCTTCAACAGGC 59.425 61.111 18.92 0.00 46.20 4.85
334 341 1.980772 GGGCATGCTTCAACAGGCT 60.981 57.895 18.92 0.00 46.16 4.58
335 342 1.509923 GGCATGCTTCAACAGGCTC 59.490 57.895 18.92 0.00 46.16 4.70
336 343 1.246056 GGCATGCTTCAACAGGCTCA 61.246 55.000 18.92 0.00 46.16 4.26
337 344 0.599558 GCATGCTTCAACAGGCTCAA 59.400 50.000 11.37 0.00 43.69 3.02
338 345 1.402456 GCATGCTTCAACAGGCTCAAG 60.402 52.381 11.37 0.00 43.69 3.02
339 346 0.886563 ATGCTTCAACAGGCTCAAGC 59.113 50.000 9.14 9.14 41.43 4.01
340 347 0.466007 TGCTTCAACAGGCTCAAGCA 60.466 50.000 13.09 13.09 46.96 3.91
341 348 0.886563 GCTTCAACAGGCTCAAGCAT 59.113 50.000 4.13 0.00 44.36 3.79
346 353 3.510846 CAGGCTCAAGCATGCTCC 58.489 61.111 22.93 17.77 45.91 4.70
347 354 1.077644 CAGGCTCAAGCATGCTCCT 60.078 57.895 22.93 19.89 45.91 3.69
348 355 1.096386 CAGGCTCAAGCATGCTCCTC 61.096 60.000 22.93 10.42 45.91 3.71
349 356 1.224039 GGCTCAAGCATGCTCCTCT 59.776 57.895 22.93 1.27 44.36 3.69
350 357 1.096386 GGCTCAAGCATGCTCCTCTG 61.096 60.000 22.93 15.77 44.36 3.35
351 358 0.107800 GCTCAAGCATGCTCCTCTGA 60.108 55.000 22.93 19.26 41.59 3.27
352 359 1.678123 GCTCAAGCATGCTCCTCTGAA 60.678 52.381 22.93 5.07 41.59 3.02
353 360 2.708051 CTCAAGCATGCTCCTCTGAAA 58.292 47.619 22.93 0.00 0.00 2.69
354 361 3.280295 CTCAAGCATGCTCCTCTGAAAT 58.720 45.455 22.93 0.00 0.00 2.17
355 362 3.693807 TCAAGCATGCTCCTCTGAAATT 58.306 40.909 22.93 0.00 0.00 1.82
356 363 3.442625 TCAAGCATGCTCCTCTGAAATTG 59.557 43.478 22.93 11.47 0.00 2.32
357 364 3.361281 AGCATGCTCCTCTGAAATTGA 57.639 42.857 16.30 0.00 0.00 2.57
358 365 3.693807 AGCATGCTCCTCTGAAATTGAA 58.306 40.909 16.30 0.00 0.00 2.69
359 366 4.084287 AGCATGCTCCTCTGAAATTGAAA 58.916 39.130 16.30 0.00 0.00 2.69
360 367 4.525487 AGCATGCTCCTCTGAAATTGAAAA 59.475 37.500 16.30 0.00 0.00 2.29
361 368 5.011329 AGCATGCTCCTCTGAAATTGAAAAA 59.989 36.000 16.30 0.00 0.00 1.94
362 369 5.119743 GCATGCTCCTCTGAAATTGAAAAAC 59.880 40.000 11.37 0.00 0.00 2.43
363 370 5.850557 TGCTCCTCTGAAATTGAAAAACA 57.149 34.783 0.00 0.00 0.00 2.83
364 371 6.219417 TGCTCCTCTGAAATTGAAAAACAA 57.781 33.333 0.00 0.00 42.95 2.83
365 372 6.638610 TGCTCCTCTGAAATTGAAAAACAAA 58.361 32.000 0.00 0.00 42.03 2.83
366 373 7.102346 TGCTCCTCTGAAATTGAAAAACAAAA 58.898 30.769 0.00 0.00 42.03 2.44
367 374 7.605691 TGCTCCTCTGAAATTGAAAAACAAAAA 59.394 29.630 0.00 0.00 42.03 1.94
368 375 8.615211 GCTCCTCTGAAATTGAAAAACAAAAAT 58.385 29.630 0.00 0.00 42.03 1.82
387 394 9.445878 ACAAAAATTTACTACTAGTTCCTAGCC 57.554 33.333 0.00 0.00 37.57 3.93
388 395 8.890718 CAAAAATTTACTACTAGTTCCTAGCCC 58.109 37.037 0.00 0.00 37.57 5.19
389 396 7.744678 AAATTTACTACTAGTTCCTAGCCCA 57.255 36.000 0.00 0.00 37.57 5.36
390 397 7.932683 AATTTACTACTAGTTCCTAGCCCAT 57.067 36.000 0.00 0.00 37.57 4.00
391 398 6.973460 TTTACTACTAGTTCCTAGCCCATC 57.027 41.667 0.00 0.00 37.57 3.51
392 399 4.817874 ACTACTAGTTCCTAGCCCATCT 57.182 45.455 0.00 0.00 37.57 2.90
393 400 4.732065 ACTACTAGTTCCTAGCCCATCTC 58.268 47.826 0.00 0.00 37.57 2.75
394 401 3.689872 ACTAGTTCCTAGCCCATCTCA 57.310 47.619 0.00 0.00 37.57 3.27
395 402 3.571590 ACTAGTTCCTAGCCCATCTCAG 58.428 50.000 0.00 0.00 37.57 3.35
396 403 2.559381 AGTTCCTAGCCCATCTCAGT 57.441 50.000 0.00 0.00 0.00 3.41
397 404 2.393646 AGTTCCTAGCCCATCTCAGTC 58.606 52.381 0.00 0.00 0.00 3.51
398 405 1.414550 GTTCCTAGCCCATCTCAGTCC 59.585 57.143 0.00 0.00 0.00 3.85
399 406 0.636647 TCCTAGCCCATCTCAGTCCA 59.363 55.000 0.00 0.00 0.00 4.02
400 407 0.755686 CCTAGCCCATCTCAGTCCAC 59.244 60.000 0.00 0.00 0.00 4.02
401 408 1.690845 CCTAGCCCATCTCAGTCCACT 60.691 57.143 0.00 0.00 0.00 4.00
402 409 1.411977 CTAGCCCATCTCAGTCCACTG 59.588 57.143 0.00 0.00 45.08 3.66
403 410 0.546267 AGCCCATCTCAGTCCACTGT 60.546 55.000 6.61 0.00 44.12 3.55
404 411 0.107945 GCCCATCTCAGTCCACTGTC 60.108 60.000 6.61 0.00 44.12 3.51
405 412 1.566211 CCCATCTCAGTCCACTGTCT 58.434 55.000 6.61 0.00 44.12 3.41
406 413 1.905215 CCCATCTCAGTCCACTGTCTT 59.095 52.381 6.61 0.00 44.12 3.01
407 414 2.354503 CCCATCTCAGTCCACTGTCTTG 60.355 54.545 6.61 3.39 44.12 3.02
408 415 2.301296 CCATCTCAGTCCACTGTCTTGT 59.699 50.000 6.61 0.00 44.12 3.16
409 416 3.324117 CATCTCAGTCCACTGTCTTGTG 58.676 50.000 6.61 0.00 44.12 3.33
410 417 2.388735 TCTCAGTCCACTGTCTTGTGT 58.611 47.619 6.61 0.00 44.12 3.72
411 418 2.362397 TCTCAGTCCACTGTCTTGTGTC 59.638 50.000 6.61 0.00 44.12 3.67
412 419 2.363680 CTCAGTCCACTGTCTTGTGTCT 59.636 50.000 6.61 0.00 44.12 3.41
413 420 3.562182 TCAGTCCACTGTCTTGTGTCTA 58.438 45.455 6.61 0.00 44.12 2.59
414 421 3.570125 TCAGTCCACTGTCTTGTGTCTAG 59.430 47.826 6.61 0.00 44.12 2.43
415 422 2.297597 AGTCCACTGTCTTGTGTCTAGC 59.702 50.000 0.00 0.00 36.30 3.42
416 423 1.618837 TCCACTGTCTTGTGTCTAGCC 59.381 52.381 0.00 0.00 36.30 3.93
417 424 1.620819 CCACTGTCTTGTGTCTAGCCT 59.379 52.381 0.00 0.00 36.30 4.58
418 425 2.611473 CCACTGTCTTGTGTCTAGCCTG 60.611 54.545 0.00 0.00 36.30 4.85
419 426 2.036475 CACTGTCTTGTGTCTAGCCTGT 59.964 50.000 0.00 0.00 33.61 4.00
420 427 2.036475 ACTGTCTTGTGTCTAGCCTGTG 59.964 50.000 0.00 0.00 0.00 3.66
421 428 2.036475 CTGTCTTGTGTCTAGCCTGTGT 59.964 50.000 0.00 0.00 0.00 3.72
422 429 2.035961 TGTCTTGTGTCTAGCCTGTGTC 59.964 50.000 0.00 0.00 0.00 3.67
423 430 2.297597 GTCTTGTGTCTAGCCTGTGTCT 59.702 50.000 0.00 0.00 0.00 3.41
424 431 3.506455 GTCTTGTGTCTAGCCTGTGTCTA 59.494 47.826 0.00 0.00 0.00 2.59
425 432 3.759086 TCTTGTGTCTAGCCTGTGTCTAG 59.241 47.826 0.00 0.00 35.90 2.43
426 433 1.819288 TGTGTCTAGCCTGTGTCTAGC 59.181 52.381 0.00 0.00 34.87 3.42
427 434 1.135333 GTGTCTAGCCTGTGTCTAGCC 59.865 57.143 0.00 0.00 34.87 3.93
428 435 1.006043 TGTCTAGCCTGTGTCTAGCCT 59.994 52.381 0.00 0.00 34.87 4.58
429 436 1.407258 GTCTAGCCTGTGTCTAGCCTG 59.593 57.143 0.00 0.00 34.87 4.85
430 437 0.103937 CTAGCCTGTGTCTAGCCTGC 59.896 60.000 0.00 0.00 0.00 4.85
431 438 0.324738 TAGCCTGTGTCTAGCCTGCT 60.325 55.000 0.00 0.00 0.00 4.24
432 439 1.449246 GCCTGTGTCTAGCCTGCTG 60.449 63.158 0.97 0.00 0.00 4.41
433 440 1.978473 CCTGTGTCTAGCCTGCTGT 59.022 57.895 0.97 0.00 0.00 4.40
434 441 0.322975 CCTGTGTCTAGCCTGCTGTT 59.677 55.000 0.97 0.00 0.00 3.16
435 442 1.271054 CCTGTGTCTAGCCTGCTGTTT 60.271 52.381 0.97 0.00 0.00 2.83
436 443 2.028112 CCTGTGTCTAGCCTGCTGTTTA 60.028 50.000 0.97 0.00 0.00 2.01
437 444 2.996621 CTGTGTCTAGCCTGCTGTTTAC 59.003 50.000 0.97 0.00 0.00 2.01
438 445 2.289444 TGTGTCTAGCCTGCTGTTTACC 60.289 50.000 0.97 0.00 0.00 2.85
439 446 1.278127 TGTCTAGCCTGCTGTTTACCC 59.722 52.381 0.97 0.00 0.00 3.69
440 447 0.535335 TCTAGCCTGCTGTTTACCCG 59.465 55.000 0.97 0.00 0.00 5.28
441 448 0.249398 CTAGCCTGCTGTTTACCCGT 59.751 55.000 0.97 0.00 0.00 5.28
442 449 0.688487 TAGCCTGCTGTTTACCCGTT 59.312 50.000 0.97 0.00 0.00 4.44
443 450 0.605589 AGCCTGCTGTTTACCCGTTC 60.606 55.000 0.00 0.00 0.00 3.95
444 451 1.583495 GCCTGCTGTTTACCCGTTCC 61.583 60.000 0.00 0.00 0.00 3.62
445 452 0.250553 CCTGCTGTTTACCCGTTCCA 60.251 55.000 0.00 0.00 0.00 3.53
446 453 1.600023 CTGCTGTTTACCCGTTCCAA 58.400 50.000 0.00 0.00 0.00 3.53
447 454 1.265905 CTGCTGTTTACCCGTTCCAAC 59.734 52.381 0.00 0.00 0.00 3.77
448 455 0.594602 GCTGTTTACCCGTTCCAACC 59.405 55.000 0.00 0.00 0.00 3.77
449 456 1.241165 CTGTTTACCCGTTCCAACCC 58.759 55.000 0.00 0.00 0.00 4.11
450 457 0.845337 TGTTTACCCGTTCCAACCCT 59.155 50.000 0.00 0.00 0.00 4.34
451 458 1.214923 TGTTTACCCGTTCCAACCCTT 59.785 47.619 0.00 0.00 0.00 3.95
452 459 1.610038 GTTTACCCGTTCCAACCCTTG 59.390 52.381 0.00 0.00 0.00 3.61
453 460 0.845337 TTACCCGTTCCAACCCTTGT 59.155 50.000 0.00 0.00 0.00 3.16
454 461 1.727062 TACCCGTTCCAACCCTTGTA 58.273 50.000 0.00 0.00 0.00 2.41
455 462 0.109153 ACCCGTTCCAACCCTTGTAC 59.891 55.000 0.00 0.00 0.00 2.90
456 463 0.399075 CCCGTTCCAACCCTTGTACT 59.601 55.000 0.00 0.00 0.00 2.73
457 464 1.202842 CCCGTTCCAACCCTTGTACTT 60.203 52.381 0.00 0.00 0.00 2.24
458 465 2.038820 CCCGTTCCAACCCTTGTACTTA 59.961 50.000 0.00 0.00 0.00 2.24
459 466 3.332034 CCGTTCCAACCCTTGTACTTAG 58.668 50.000 0.00 0.00 0.00 2.18
460 467 3.007182 CCGTTCCAACCCTTGTACTTAGA 59.993 47.826 0.00 0.00 0.00 2.10
461 468 4.503643 CCGTTCCAACCCTTGTACTTAGAA 60.504 45.833 0.00 0.00 0.00 2.10
462 469 4.689345 CGTTCCAACCCTTGTACTTAGAAG 59.311 45.833 0.00 0.00 0.00 2.85
463 470 5.618236 GTTCCAACCCTTGTACTTAGAAGT 58.382 41.667 0.00 0.00 42.91 3.01
464 471 5.899631 TCCAACCCTTGTACTTAGAAGTT 57.100 39.130 0.00 0.00 40.37 2.66
465 472 5.617252 TCCAACCCTTGTACTTAGAAGTTG 58.383 41.667 0.00 15.85 40.37 3.16
466 473 5.367352 TCCAACCCTTGTACTTAGAAGTTGA 59.633 40.000 20.04 11.39 40.37 3.18
467 474 5.701290 CCAACCCTTGTACTTAGAAGTTGAG 59.299 44.000 20.04 12.82 40.37 3.02
468 475 4.895961 ACCCTTGTACTTAGAAGTTGAGC 58.104 43.478 0.00 0.00 40.37 4.26
469 476 4.254492 CCCTTGTACTTAGAAGTTGAGCC 58.746 47.826 0.00 0.00 40.37 4.70
470 477 4.020128 CCCTTGTACTTAGAAGTTGAGCCT 60.020 45.833 0.00 0.00 40.37 4.58
471 478 4.932200 CCTTGTACTTAGAAGTTGAGCCTG 59.068 45.833 0.00 0.00 40.37 4.85
472 479 5.511545 CCTTGTACTTAGAAGTTGAGCCTGT 60.512 44.000 0.00 0.00 40.37 4.00
473 480 5.135508 TGTACTTAGAAGTTGAGCCTGTC 57.864 43.478 0.00 0.00 40.37 3.51
474 481 3.686916 ACTTAGAAGTTGAGCCTGTCC 57.313 47.619 0.00 0.00 35.21 4.02
475 482 3.243724 ACTTAGAAGTTGAGCCTGTCCT 58.756 45.455 0.00 0.00 35.21 3.85
476 483 3.648545 ACTTAGAAGTTGAGCCTGTCCTT 59.351 43.478 0.00 0.00 35.21 3.36
477 484 2.849294 AGAAGTTGAGCCTGTCCTTC 57.151 50.000 0.00 0.00 33.40 3.46
478 485 2.050144 AGAAGTTGAGCCTGTCCTTCA 58.950 47.619 0.00 0.00 35.19 3.02
479 486 2.641815 AGAAGTTGAGCCTGTCCTTCAT 59.358 45.455 0.00 0.00 35.19 2.57
480 487 3.073650 AGAAGTTGAGCCTGTCCTTCATT 59.926 43.478 0.00 0.00 35.19 2.57
481 488 3.515602 AGTTGAGCCTGTCCTTCATTT 57.484 42.857 0.00 0.00 0.00 2.32
482 489 3.837355 AGTTGAGCCTGTCCTTCATTTT 58.163 40.909 0.00 0.00 0.00 1.82
483 490 3.823304 AGTTGAGCCTGTCCTTCATTTTC 59.177 43.478 0.00 0.00 0.00 2.29
484 491 3.507162 TGAGCCTGTCCTTCATTTTCA 57.493 42.857 0.00 0.00 0.00 2.69
485 492 4.038271 TGAGCCTGTCCTTCATTTTCAT 57.962 40.909 0.00 0.00 0.00 2.57
486 493 4.012374 TGAGCCTGTCCTTCATTTTCATC 58.988 43.478 0.00 0.00 0.00 2.92
487 494 3.359950 AGCCTGTCCTTCATTTTCATCC 58.640 45.455 0.00 0.00 0.00 3.51
488 495 3.091545 GCCTGTCCTTCATTTTCATCCA 58.908 45.455 0.00 0.00 0.00 3.41
489 496 3.511146 GCCTGTCCTTCATTTTCATCCAA 59.489 43.478 0.00 0.00 0.00 3.53
490 497 4.381292 GCCTGTCCTTCATTTTCATCCAAG 60.381 45.833 0.00 0.00 0.00 3.61
491 498 5.012239 CCTGTCCTTCATTTTCATCCAAGA 58.988 41.667 0.00 0.00 0.00 3.02
492 499 5.655532 CCTGTCCTTCATTTTCATCCAAGAT 59.344 40.000 0.00 0.00 0.00 2.40
493 500 6.154021 CCTGTCCTTCATTTTCATCCAAGATT 59.846 38.462 0.00 0.00 0.00 2.40
494 501 7.161773 TGTCCTTCATTTTCATCCAAGATTC 57.838 36.000 0.00 0.00 0.00 2.52
495 502 6.127925 TGTCCTTCATTTTCATCCAAGATTCG 60.128 38.462 0.00 0.00 0.00 3.34
496 503 5.039333 CCTTCATTTTCATCCAAGATTCGC 58.961 41.667 0.00 0.00 0.00 4.70
497 504 4.637483 TCATTTTCATCCAAGATTCGCC 57.363 40.909 0.00 0.00 0.00 5.54
498 505 4.015764 TCATTTTCATCCAAGATTCGCCA 58.984 39.130 0.00 0.00 0.00 5.69
499 506 3.848272 TTTTCATCCAAGATTCGCCAC 57.152 42.857 0.00 0.00 0.00 5.01
500 507 2.787473 TTCATCCAAGATTCGCCACT 57.213 45.000 0.00 0.00 0.00 4.00
501 508 2.028420 TCATCCAAGATTCGCCACTG 57.972 50.000 0.00 0.00 0.00 3.66
502 509 1.278985 TCATCCAAGATTCGCCACTGT 59.721 47.619 0.00 0.00 0.00 3.55
503 510 2.086869 CATCCAAGATTCGCCACTGTT 58.913 47.619 0.00 0.00 0.00 3.16
504 511 1.522668 TCCAAGATTCGCCACTGTTG 58.477 50.000 0.00 0.00 0.00 3.33
514 521 3.575399 CCACTGTTGGCAAAGAAGC 57.425 52.632 0.00 0.00 35.56 3.86
528 535 1.276622 AGAAGCCGTATGGACCTTGT 58.723 50.000 4.73 0.00 37.49 3.16
545 552 4.181578 CCTTGTTAACATGTACTCCCTCG 58.818 47.826 9.56 0.00 0.00 4.63
558 565 5.662208 TGTACTCCCTCGGTTCCATATTAAA 59.338 40.000 0.00 0.00 0.00 1.52
562 569 6.044404 ACTCCCTCGGTTCCATATTAAATCAT 59.956 38.462 0.00 0.00 0.00 2.45
563 570 6.848069 TCCCTCGGTTCCATATTAAATCATT 58.152 36.000 0.00 0.00 0.00 2.57
564 571 7.294584 TCCCTCGGTTCCATATTAAATCATTT 58.705 34.615 0.00 0.00 0.00 2.32
566 573 6.863126 CCTCGGTTCCATATTAAATCATTTGC 59.137 38.462 0.00 0.00 0.00 3.68
629 636 5.592688 TGAACTGAAGGGAGTAAACAAAAGG 59.407 40.000 0.00 0.00 0.00 3.11
638 645 7.643123 AGGGAGTAAACAAAAGGATGATATGT 58.357 34.615 0.00 0.00 0.00 2.29
656 663 2.278854 TGTGCCATATCATCACGTGTG 58.721 47.619 16.51 13.05 33.69 3.82
658 665 3.118956 TGTGCCATATCATCACGTGTGTA 60.119 43.478 16.51 5.06 33.69 2.90
662 669 5.221342 TGCCATATCATCACGTGTGTATACA 60.221 40.000 16.51 0.08 0.00 2.29
677 684 2.665649 ATACACCGCTCGACATGAAA 57.334 45.000 0.00 0.00 0.00 2.69
681 688 0.892755 ACCGCTCGACATGAAAGGTA 59.107 50.000 0.00 0.00 35.43 3.08
691 698 7.464710 GCTCGACATGAAAGGTAAGTTATCTTG 60.465 40.741 9.18 0.49 35.36 3.02
702 709 9.449719 AAGGTAAGTTATCTTGTAATCCAACAG 57.550 33.333 7.63 0.00 35.36 3.16
724 731 7.962917 ACAGTCATTTTTGTTTTGTGACAATC 58.037 30.769 0.00 0.00 41.12 2.67
755 1046 2.021457 ACGAACACAGGTGAAAAAGGG 58.979 47.619 6.40 0.00 0.00 3.95
757 1048 2.685897 CGAACACAGGTGAAAAAGGGAA 59.314 45.455 6.40 0.00 0.00 3.97
758 1049 3.243068 CGAACACAGGTGAAAAAGGGAAG 60.243 47.826 6.40 0.00 0.00 3.46
761 1052 2.887152 CACAGGTGAAAAAGGGAAGGAG 59.113 50.000 0.00 0.00 0.00 3.69
767 1058 5.128827 AGGTGAAAAAGGGAAGGAGAAAAAC 59.871 40.000 0.00 0.00 0.00 2.43
774 1065 4.556697 AGGGAAGGAGAAAAACCACAAAT 58.443 39.130 0.00 0.00 0.00 2.32
775 1066 4.344968 AGGGAAGGAGAAAAACCACAAATG 59.655 41.667 0.00 0.00 0.00 2.32
779 1070 6.406961 GGAAGGAGAAAAACCACAAATGAGTT 60.407 38.462 0.00 0.00 0.00 3.01
791 1082 3.882888 ACAAATGAGTTCGAAAGCAGGAA 59.117 39.130 0.00 0.00 0.00 3.36
792 1083 4.520492 ACAAATGAGTTCGAAAGCAGGAAT 59.480 37.500 0.00 0.00 0.00 3.01
793 1084 4.954092 AATGAGTTCGAAAGCAGGAATC 57.046 40.909 0.00 0.00 0.00 2.52
795 1086 2.038426 TGAGTTCGAAAGCAGGAATCCA 59.962 45.455 0.00 0.00 0.00 3.41
796 1087 3.274288 GAGTTCGAAAGCAGGAATCCAT 58.726 45.455 0.00 0.00 0.00 3.41
798 1089 4.843728 AGTTCGAAAGCAGGAATCCATTA 58.156 39.130 0.00 0.00 0.00 1.90
800 1091 5.355350 AGTTCGAAAGCAGGAATCCATTAAG 59.645 40.000 0.00 0.00 0.00 1.85
801 1092 4.199310 TCGAAAGCAGGAATCCATTAAGG 58.801 43.478 0.61 0.00 39.47 2.69
802 1093 3.243201 CGAAAGCAGGAATCCATTAAGGC 60.243 47.826 0.61 0.00 37.29 4.35
803 1094 3.677156 AAGCAGGAATCCATTAAGGCT 57.323 42.857 0.61 0.00 37.29 4.58
804 1095 3.220674 AGCAGGAATCCATTAAGGCTC 57.779 47.619 0.61 0.00 37.29 4.70
805 1096 2.782341 AGCAGGAATCCATTAAGGCTCT 59.218 45.455 0.61 0.00 37.29 4.09
806 1097 2.883386 GCAGGAATCCATTAAGGCTCTG 59.117 50.000 0.61 0.00 37.29 3.35
807 1098 3.686691 GCAGGAATCCATTAAGGCTCTGT 60.687 47.826 0.61 0.00 37.29 3.41
808 1099 4.530875 CAGGAATCCATTAAGGCTCTGTT 58.469 43.478 0.61 0.00 37.29 3.16
809 1100 4.578105 CAGGAATCCATTAAGGCTCTGTTC 59.422 45.833 0.61 0.00 37.29 3.18
810 1101 3.561725 GGAATCCATTAAGGCTCTGTTCG 59.438 47.826 0.00 0.00 37.29 3.95
811 1102 2.691409 TCCATTAAGGCTCTGTTCGG 57.309 50.000 0.00 0.00 37.29 4.30
812 1103 1.906574 TCCATTAAGGCTCTGTTCGGT 59.093 47.619 0.00 0.00 37.29 4.69
813 1104 2.304761 TCCATTAAGGCTCTGTTCGGTT 59.695 45.455 0.00 0.00 37.29 4.44
814 1105 3.516300 TCCATTAAGGCTCTGTTCGGTTA 59.484 43.478 0.00 0.00 37.29 2.85
815 1106 4.020039 TCCATTAAGGCTCTGTTCGGTTAA 60.020 41.667 0.00 0.00 37.29 2.01
816 1107 4.881850 CCATTAAGGCTCTGTTCGGTTAAT 59.118 41.667 0.00 0.00 0.00 1.40
817 1108 5.007724 CCATTAAGGCTCTGTTCGGTTAATC 59.992 44.000 0.00 0.00 0.00 1.75
818 1109 2.693267 AGGCTCTGTTCGGTTAATCC 57.307 50.000 0.00 0.00 0.00 3.01
819 1110 1.209747 AGGCTCTGTTCGGTTAATCCC 59.790 52.381 0.00 0.00 0.00 3.85
820 1111 1.065709 GGCTCTGTTCGGTTAATCCCA 60.066 52.381 0.00 0.00 0.00 4.37
821 1112 2.421529 GGCTCTGTTCGGTTAATCCCAT 60.422 50.000 0.00 0.00 0.00 4.00
822 1113 2.872858 GCTCTGTTCGGTTAATCCCATC 59.127 50.000 0.00 0.00 0.00 3.51
823 1114 3.467803 CTCTGTTCGGTTAATCCCATCC 58.532 50.000 0.00 0.00 0.00 3.51
824 1115 2.171870 TCTGTTCGGTTAATCCCATCCC 59.828 50.000 0.00 0.00 0.00 3.85
825 1116 2.172717 CTGTTCGGTTAATCCCATCCCT 59.827 50.000 0.00 0.00 0.00 4.20
826 1117 3.386063 TGTTCGGTTAATCCCATCCCTA 58.614 45.455 0.00 0.00 0.00 3.53
827 1118 3.389983 TGTTCGGTTAATCCCATCCCTAG 59.610 47.826 0.00 0.00 0.00 3.02
828 1119 2.616524 TCGGTTAATCCCATCCCTAGG 58.383 52.381 0.06 0.06 0.00 3.02
829 1120 2.090380 TCGGTTAATCCCATCCCTAGGT 60.090 50.000 8.29 0.00 0.00 3.08
830 1121 2.038557 CGGTTAATCCCATCCCTAGGTG 59.961 54.545 8.29 0.00 0.00 4.00
831 1122 2.375509 GGTTAATCCCATCCCTAGGTGG 59.624 54.545 8.29 9.77 35.22 4.61
832 1123 3.323775 GTTAATCCCATCCCTAGGTGGA 58.676 50.000 18.08 13.08 37.72 4.02
833 1124 2.843909 AATCCCATCCCTAGGTGGAT 57.156 50.000 18.08 14.56 46.22 3.41
834 1125 2.843909 ATCCCATCCCTAGGTGGATT 57.156 50.000 18.08 4.13 42.62 3.01
835 1126 1.819753 TCCCATCCCTAGGTGGATTG 58.180 55.000 18.08 6.15 42.62 2.67
836 1127 0.773644 CCCATCCCTAGGTGGATTGG 59.226 60.000 18.08 10.88 42.62 3.16
837 1128 1.698928 CCCATCCCTAGGTGGATTGGA 60.699 57.143 18.08 2.27 46.13 3.53
838 1129 1.701847 CCATCCCTAGGTGGATTGGAG 59.298 57.143 12.24 0.00 42.62 3.86
839 1130 1.701847 CATCCCTAGGTGGATTGGAGG 59.298 57.143 8.29 0.00 42.62 4.30
840 1131 0.694444 TCCCTAGGTGGATTGGAGGC 60.694 60.000 8.29 0.00 38.35 4.70
841 1132 1.447643 CCTAGGTGGATTGGAGGCG 59.552 63.158 0.00 0.00 38.35 5.52
842 1133 1.048724 CCTAGGTGGATTGGAGGCGA 61.049 60.000 0.00 0.00 38.35 5.54
843 1134 1.051812 CTAGGTGGATTGGAGGCGAT 58.948 55.000 0.00 0.00 0.00 4.58
844 1135 1.417890 CTAGGTGGATTGGAGGCGATT 59.582 52.381 0.00 0.00 0.00 3.34
845 1136 0.625849 AGGTGGATTGGAGGCGATTT 59.374 50.000 0.00 0.00 0.00 2.17
846 1137 0.740737 GGTGGATTGGAGGCGATTTG 59.259 55.000 0.00 0.00 0.00 2.32
847 1138 1.681780 GGTGGATTGGAGGCGATTTGA 60.682 52.381 0.00 0.00 0.00 2.69
848 1139 2.091541 GTGGATTGGAGGCGATTTGAA 58.908 47.619 0.00 0.00 0.00 2.69
849 1140 2.689983 GTGGATTGGAGGCGATTTGAAT 59.310 45.455 0.00 0.00 0.00 2.57
850 1141 2.689471 TGGATTGGAGGCGATTTGAATG 59.311 45.455 0.00 0.00 0.00 2.67
851 1142 2.035066 GGATTGGAGGCGATTTGAATGG 59.965 50.000 0.00 0.00 0.00 3.16
852 1143 1.473258 TTGGAGGCGATTTGAATGGG 58.527 50.000 0.00 0.00 0.00 4.00
853 1144 0.623194 TGGAGGCGATTTGAATGGGA 59.377 50.000 0.00 0.00 0.00 4.37
869 1160 0.532196 GGGAATCCGACCCGCTAAAG 60.532 60.000 0.00 0.00 37.85 1.85
1113 1404 1.393487 GCGAGTTCCTACTCCCCTCC 61.393 65.000 0.00 0.00 46.63 4.30
1155 1446 0.036294 CTCCCCCTTTCAGTTCGTCC 60.036 60.000 0.00 0.00 0.00 4.79
1156 1447 1.375523 CCCCCTTTCAGTTCGTCCG 60.376 63.158 0.00 0.00 0.00 4.79
1248 1541 9.868277 CAAGTATATGTCTTCTGTTTCTTCTCT 57.132 33.333 0.00 0.00 0.00 3.10
1251 1544 3.643763 TGTCTTCTGTTTCTTCTCTCGC 58.356 45.455 0.00 0.00 0.00 5.03
1269 1562 0.670239 GCGTGGGCAATTGGAAAAGG 60.670 55.000 7.72 0.00 39.62 3.11
1272 1565 0.686224 TGGGCAATTGGAAAAGGCTG 59.314 50.000 7.72 0.00 32.41 4.85
1285 1578 2.125106 GGCTGTTAGGAGGTGCGG 60.125 66.667 0.00 0.00 0.00 5.69
1289 1582 2.202756 GTTAGGAGGTGCGGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
1350 1643 3.338249 TCTCCAATTAGCACTGCAAGAC 58.662 45.455 3.30 0.00 37.43 3.01
1363 1656 1.401552 TGCAAGACAAGGCATAATCGC 59.598 47.619 0.00 0.00 34.58 4.58
1398 1695 6.027131 CAGTCGCTAATCTAGTCATATGCTC 58.973 44.000 0.00 0.00 0.00 4.26
1516 1813 4.754618 TCAAGCTTTTCGATTTGTAGCTGA 59.245 37.500 0.00 0.00 41.05 4.26
1545 1842 5.979517 GCAGTTCAAAGTATCATTTATGGGC 59.020 40.000 0.00 0.00 0.00 5.36
1590 1887 0.742281 GATGGCTGTGTGATGCGTCT 60.742 55.000 7.58 0.00 0.00 4.18
1649 1946 5.430089 ACATATAGGGATAGGCCAATTCTCC 59.570 44.000 5.01 2.83 38.95 3.71
1717 2020 7.320443 TGTACATCAGGCTATTTTAAAGCAG 57.680 36.000 0.00 0.00 41.93 4.24
1793 2182 2.353011 CCCGTTTTGATGCAAAGCTCAT 60.353 45.455 0.00 0.00 34.72 2.90
1851 2240 1.503542 GTGCGATGAGTGCTTTGGG 59.496 57.895 0.00 0.00 0.00 4.12
1962 2351 9.487790 CTTTCTCTTTCTAGTCTGAAATTCTGT 57.512 33.333 0.00 0.00 35.68 3.41
2019 2408 0.029834 GGTCCGCAGCAGCAATTATG 59.970 55.000 0.82 0.00 42.27 1.90
2042 2431 7.040961 TATGGATTCATAGTATCGTTGACGACA 60.041 37.037 8.55 0.00 41.71 4.35
2075 2464 0.955919 GTGCCCACTGTGCTTAGTCC 60.956 60.000 1.29 0.00 0.00 3.85
2093 2482 8.799367 GCTTAGTCCCAAATTTCCTAAAAGTTA 58.201 33.333 0.00 0.00 31.35 2.24
2150 2540 3.070446 ACAAACCAGAGTTCGACCATGTA 59.930 43.478 0.00 0.00 34.19 2.29
2151 2541 3.314541 AACCAGAGTTCGACCATGTAC 57.685 47.619 0.00 0.00 0.00 2.90
2152 2542 2.244695 ACCAGAGTTCGACCATGTACA 58.755 47.619 0.00 0.00 0.00 2.90
2153 2543 2.832129 ACCAGAGTTCGACCATGTACAT 59.168 45.455 1.41 1.41 0.00 2.29
2218 2612 4.728772 TCATGGGAAAATTCTGTCAGTGT 58.271 39.130 0.00 0.00 0.00 3.55
2271 2665 5.361857 AGAAAAACAATAGCCATCATCCAGG 59.638 40.000 0.00 0.00 0.00 4.45
2397 2791 2.157738 AGCTTGCTGCCTCTTACAAAG 58.842 47.619 0.00 0.00 44.23 2.77
2423 2817 2.099831 CGCTACAGGGACGACGTC 59.900 66.667 19.70 19.70 0.00 4.34
2445 2839 1.605710 GCCAGCTGATAATTGCACGAT 59.394 47.619 17.39 0.00 0.00 3.73
2533 2927 2.353030 TCGTGCACTGTCGTGTCG 60.353 61.111 16.19 0.00 43.16 4.35
2573 2972 9.337396 ACAAAATAAGATGTTACACACAGAAGA 57.663 29.630 0.00 0.00 39.40 2.87
2601 3000 8.514330 TTCCTAGTTGCCGAAAATATATTTGT 57.486 30.769 11.42 2.60 0.00 2.83
3267 3666 6.551975 TGTAACGGTATATTGATTCCAGGAGA 59.448 38.462 0.00 0.00 0.00 3.71
3275 3674 9.030452 GTATATTGATTCCAGGAGACAGTCTAT 57.970 37.037 2.00 0.00 0.00 1.98
3553 3952 1.407618 GGAATTACCGGGGATTGCAAC 59.592 52.381 6.32 0.00 0.00 4.17
3593 3992 0.834612 TATACCCTGCTTTCCCGGTG 59.165 55.000 0.00 0.00 0.00 4.94
3776 4175 0.324645 CCCACCCATTCCTTTCCCTG 60.325 60.000 0.00 0.00 0.00 4.45
3791 4190 1.077787 CCTGTAATGCCGCCTTCCA 60.078 57.895 0.00 0.00 0.00 3.53
3823 4222 1.285078 GTTTCTCCCTGGCCTAATGGT 59.715 52.381 3.32 0.00 35.27 3.55
3826 4225 2.516930 CCCTGGCCTAATGGTGCG 60.517 66.667 3.32 0.00 35.27 5.34
3858 4257 2.679639 CGTGGCTTGGACCTGCTTATAA 60.680 50.000 9.31 0.00 0.00 0.98
3919 4318 3.383185 CAGATAGTGGTTCTCCAGTCCTC 59.617 52.174 0.00 0.00 45.25 3.71
3943 4342 4.315803 GAAAACACCCGAGAGATTCTGAA 58.684 43.478 0.00 0.00 0.00 3.02
3969 4368 2.310538 AGGTGGTGAAAAGGCAGAAAG 58.689 47.619 0.00 0.00 0.00 2.62
4000 4399 1.153107 TCCGAAGACGCTCCGGATA 60.153 57.895 3.57 0.00 46.17 2.59
4231 4630 7.119360 GTGTTTTTACTTTTCTTCAAGCATGC 58.881 34.615 10.51 10.51 0.00 4.06
4250 4649 7.827701 AGCATGCTATATCAAGAAAATGATGG 58.172 34.615 21.21 0.00 40.21 3.51
4298 4697 7.158697 TGTAGATGTTGTGCAACTGTACTATT 58.841 34.615 14.97 0.00 41.67 1.73
4377 4777 0.179134 GGGTTCAGATCAGACCGTCG 60.179 60.000 0.00 0.00 0.00 5.12
4559 5001 3.908643 TCTGATGCATCTGCTTCTCTT 57.091 42.857 26.32 0.00 43.23 2.85
4617 5077 1.989586 TGGTGGTTGTAAGCTATGGGT 59.010 47.619 0.00 0.00 0.00 4.51
4618 5078 3.054948 GTGGTGGTTGTAAGCTATGGGTA 60.055 47.826 0.00 0.00 0.00 3.69
4619 5079 3.783642 TGGTGGTTGTAAGCTATGGGTAT 59.216 43.478 0.00 0.00 0.00 2.73
4620 5080 4.141574 TGGTGGTTGTAAGCTATGGGTATC 60.142 45.833 0.00 0.00 0.00 2.24
4836 5319 1.796796 GCTCTTTGCGGATGTGACC 59.203 57.895 0.00 0.00 0.00 4.02
4893 5378 3.507233 TCCACCATGCATCTTTTCTTCAC 59.493 43.478 0.00 0.00 0.00 3.18
4947 5432 3.612423 GCCACTGAAACGGATATTTTTGC 59.388 43.478 0.00 0.00 0.00 3.68
4967 5452 1.475682 CTCCTGAAAATGCTTGCTCCC 59.524 52.381 0.00 0.00 0.00 4.30
4968 5453 1.076024 TCCTGAAAATGCTTGCTCCCT 59.924 47.619 0.00 0.00 0.00 4.20
4969 5454 1.203994 CCTGAAAATGCTTGCTCCCTG 59.796 52.381 0.00 0.00 0.00 4.45
4970 5455 0.604578 TGAAAATGCTTGCTCCCTGC 59.395 50.000 0.00 0.00 43.25 4.85
4989 5474 1.462670 GCACTGCACTGAAGTAGAAGC 59.537 52.381 0.00 0.00 0.00 3.86
5000 5485 7.228314 ACTGAAGTAGAAGCAGTGTAATACA 57.772 36.000 0.00 0.00 41.02 2.29
5001 5486 7.316640 ACTGAAGTAGAAGCAGTGTAATACAG 58.683 38.462 0.00 0.00 41.02 2.74
5002 5487 7.039644 ACTGAAGTAGAAGCAGTGTAATACAGT 60.040 37.037 0.00 0.00 41.02 3.55
5003 5488 8.344446 TGAAGTAGAAGCAGTGTAATACAGTA 57.656 34.615 0.00 0.00 29.11 2.74
5004 5489 8.459635 TGAAGTAGAAGCAGTGTAATACAGTAG 58.540 37.037 0.00 0.00 29.11 2.57
5005 5490 7.941431 AGTAGAAGCAGTGTAATACAGTAGT 57.059 36.000 0.00 0.00 29.11 2.73
5009 5494 7.763356 AGAAGCAGTGTAATACAGTAGTGTAG 58.237 38.462 15.39 2.23 42.53 2.74
5031 5516 1.160137 CTTGCAGGAACTCGAAAGGG 58.840 55.000 0.00 0.00 34.60 3.95
5043 5528 1.026718 CGAAAGGGCCTGCCTGTAAG 61.027 60.000 6.92 0.00 36.10 2.34
5045 5530 0.329596 AAAGGGCCTGCCTGTAAGAG 59.670 55.000 6.92 0.00 34.07 2.85
5056 5541 0.108615 CTGTAAGAGGCCCGTCACTG 60.109 60.000 0.00 0.00 34.07 3.66
5057 5542 1.448013 GTAAGAGGCCCGTCACTGC 60.448 63.158 0.00 0.00 0.00 4.40
5059 5544 1.888436 TAAGAGGCCCGTCACTGCAG 61.888 60.000 13.48 13.48 0.00 4.41
5079 5564 1.607509 GCACTCTCACTGTCACTGCAT 60.608 52.381 0.00 0.00 0.00 3.96
5080 5565 2.763933 CACTCTCACTGTCACTGCATT 58.236 47.619 0.00 0.00 0.00 3.56
5081 5566 3.136763 CACTCTCACTGTCACTGCATTT 58.863 45.455 0.00 0.00 0.00 2.32
5082 5567 3.562973 CACTCTCACTGTCACTGCATTTT 59.437 43.478 0.00 0.00 0.00 1.82
5083 5568 3.562973 ACTCTCACTGTCACTGCATTTTG 59.437 43.478 0.00 0.00 0.00 2.44
5084 5569 2.291465 TCTCACTGTCACTGCATTTTGC 59.709 45.455 0.00 0.00 45.29 3.68
5085 5570 1.337703 TCACTGTCACTGCATTTTGCC 59.662 47.619 0.00 0.00 44.23 4.52
5086 5571 1.338973 CACTGTCACTGCATTTTGCCT 59.661 47.619 0.00 0.00 44.23 4.75
5087 5572 1.610522 ACTGTCACTGCATTTTGCCTC 59.389 47.619 0.00 0.00 44.23 4.70
5088 5573 1.884579 CTGTCACTGCATTTTGCCTCT 59.115 47.619 0.00 0.00 44.23 3.69
5089 5574 2.295349 CTGTCACTGCATTTTGCCTCTT 59.705 45.455 0.00 0.00 44.23 2.85
5090 5575 2.294233 TGTCACTGCATTTTGCCTCTTC 59.706 45.455 0.00 0.00 44.23 2.87
5091 5576 2.294233 GTCACTGCATTTTGCCTCTTCA 59.706 45.455 0.00 0.00 44.23 3.02
5092 5577 2.555325 TCACTGCATTTTGCCTCTTCAG 59.445 45.455 0.00 0.00 44.23 3.02
5093 5578 2.555325 CACTGCATTTTGCCTCTTCAGA 59.445 45.455 0.00 0.00 44.23 3.27
5094 5579 3.005050 CACTGCATTTTGCCTCTTCAGAA 59.995 43.478 0.00 0.00 44.23 3.02
5095 5580 3.830755 ACTGCATTTTGCCTCTTCAGAAT 59.169 39.130 0.00 0.00 44.23 2.40
5096 5581 4.174009 CTGCATTTTGCCTCTTCAGAATG 58.826 43.478 0.00 3.55 44.23 2.67
5097 5582 3.827876 TGCATTTTGCCTCTTCAGAATGA 59.172 39.130 10.06 0.00 43.92 2.57
5098 5583 4.464951 TGCATTTTGCCTCTTCAGAATGAT 59.535 37.500 10.06 0.00 44.70 2.45
5099 5584 5.041940 GCATTTTGCCTCTTCAGAATGATC 58.958 41.667 10.06 0.00 41.01 2.92
5100 5585 5.393787 GCATTTTGCCTCTTCAGAATGATCA 60.394 40.000 0.00 0.00 41.01 2.92
5101 5586 6.847702 GCATTTTGCCTCTTCAGAATGATCAA 60.848 38.462 0.00 0.00 41.01 2.57
5102 5587 8.783584 GCATTTTGCCTCTTCAGAATGATCAAC 61.784 40.741 0.00 0.00 41.01 3.18
5120 5605 3.658757 AACGTTTGGTTGATCCATTGG 57.341 42.857 0.00 0.00 46.60 3.16
5121 5606 2.870175 ACGTTTGGTTGATCCATTGGA 58.130 42.857 8.08 8.08 46.60 3.53
5122 5607 2.819608 ACGTTTGGTTGATCCATTGGAG 59.180 45.455 11.78 0.00 46.60 3.86
5123 5608 2.164219 CGTTTGGTTGATCCATTGGAGG 59.836 50.000 11.78 0.00 46.60 4.30
5124 5609 3.165071 GTTTGGTTGATCCATTGGAGGT 58.835 45.455 11.78 0.00 46.60 3.85
5125 5610 3.541242 TTGGTTGATCCATTGGAGGTT 57.459 42.857 11.78 0.00 46.60 3.50
5126 5611 2.806434 TGGTTGATCCATTGGAGGTTG 58.194 47.619 11.78 0.00 41.93 3.77
5127 5612 2.102578 GGTTGATCCATTGGAGGTTGG 58.897 52.381 11.78 0.00 34.05 3.77
5128 5613 2.102578 GTTGATCCATTGGAGGTTGGG 58.897 52.381 11.78 0.00 34.05 4.12
5129 5614 0.033208 TGATCCATTGGAGGTTGGGC 60.033 55.000 11.78 0.00 34.05 5.36
5130 5615 1.076777 ATCCATTGGAGGTTGGGCG 60.077 57.895 11.78 0.00 34.05 6.13
5131 5616 3.451894 CCATTGGAGGTTGGGCGC 61.452 66.667 0.00 0.00 0.00 6.53
5132 5617 2.676121 CATTGGAGGTTGGGCGCA 60.676 61.111 10.83 0.00 0.00 6.09
5133 5618 2.053865 CATTGGAGGTTGGGCGCAT 61.054 57.895 10.83 0.00 0.00 4.73
5134 5619 1.305213 ATTGGAGGTTGGGCGCATT 60.305 52.632 10.83 0.00 0.00 3.56
5135 5620 0.904394 ATTGGAGGTTGGGCGCATTT 60.904 50.000 10.83 0.00 0.00 2.32
5136 5621 1.118356 TTGGAGGTTGGGCGCATTTT 61.118 50.000 10.83 0.00 0.00 1.82
5137 5622 1.118356 TGGAGGTTGGGCGCATTTTT 61.118 50.000 10.83 0.00 0.00 1.94
5138 5623 0.670239 GGAGGTTGGGCGCATTTTTG 60.670 55.000 10.83 0.00 0.00 2.44
5139 5624 0.670239 GAGGTTGGGCGCATTTTTGG 60.670 55.000 10.83 0.00 0.00 3.28
5140 5625 2.324330 GGTTGGGCGCATTTTTGGC 61.324 57.895 10.83 0.00 0.00 4.52
5141 5626 1.301637 GTTGGGCGCATTTTTGGCT 60.302 52.632 10.83 0.00 0.00 4.75
5142 5627 1.005156 TTGGGCGCATTTTTGGCTC 60.005 52.632 10.83 0.00 0.00 4.70
5143 5628 1.470996 TTGGGCGCATTTTTGGCTCT 61.471 50.000 10.83 0.00 0.00 4.09
5144 5629 1.293179 GGGCGCATTTTTGGCTCTT 59.707 52.632 10.83 0.00 0.00 2.85
5145 5630 0.737367 GGGCGCATTTTTGGCTCTTC 60.737 55.000 10.83 0.00 0.00 2.87
5146 5631 0.244721 GGCGCATTTTTGGCTCTTCT 59.755 50.000 10.83 0.00 0.00 2.85
5147 5632 1.343506 GCGCATTTTTGGCTCTTCTG 58.656 50.000 0.30 0.00 0.00 3.02
5148 5633 1.068333 GCGCATTTTTGGCTCTTCTGA 60.068 47.619 0.30 0.00 0.00 3.27
5149 5634 2.607771 GCGCATTTTTGGCTCTTCTGAA 60.608 45.455 0.30 0.00 0.00 3.02
5150 5635 3.240069 CGCATTTTTGGCTCTTCTGAAG 58.760 45.455 11.18 11.18 0.00 3.02
5151 5636 3.582780 GCATTTTTGGCTCTTCTGAAGG 58.417 45.455 16.83 9.10 0.00 3.46
5152 5637 3.256631 GCATTTTTGGCTCTTCTGAAGGA 59.743 43.478 16.83 3.90 0.00 3.36
5153 5638 4.262164 GCATTTTTGGCTCTTCTGAAGGAA 60.262 41.667 16.83 3.40 0.00 3.36
5154 5639 5.568223 GCATTTTTGGCTCTTCTGAAGGAAT 60.568 40.000 16.83 4.65 33.01 3.01
5155 5640 6.350445 GCATTTTTGGCTCTTCTGAAGGAATA 60.350 38.462 16.83 0.00 33.01 1.75
5156 5641 7.605449 CATTTTTGGCTCTTCTGAAGGAATAA 58.395 34.615 16.83 5.93 33.01 1.40
5157 5642 6.575162 TTTTGGCTCTTCTGAAGGAATAAC 57.425 37.500 16.83 3.71 33.01 1.89
5158 5643 3.861840 TGGCTCTTCTGAAGGAATAACG 58.138 45.455 16.83 0.00 33.01 3.18
5159 5644 3.260884 TGGCTCTTCTGAAGGAATAACGT 59.739 43.478 16.83 0.00 33.01 3.99
5160 5645 4.254492 GGCTCTTCTGAAGGAATAACGTT 58.746 43.478 16.83 5.88 33.01 3.99
5161 5646 4.695928 GGCTCTTCTGAAGGAATAACGTTT 59.304 41.667 16.83 0.00 33.01 3.60
5162 5647 5.390991 GGCTCTTCTGAAGGAATAACGTTTG 60.391 44.000 16.83 0.00 33.01 2.93
5163 5648 5.390991 GCTCTTCTGAAGGAATAACGTTTGG 60.391 44.000 16.83 0.00 33.01 3.28
5164 5649 5.617252 TCTTCTGAAGGAATAACGTTTGGT 58.383 37.500 16.83 0.00 33.01 3.67
5165 5650 5.699458 TCTTCTGAAGGAATAACGTTTGGTC 59.301 40.000 16.83 1.33 33.01 4.02
5166 5651 3.991773 TCTGAAGGAATAACGTTTGGTCG 59.008 43.478 5.91 0.00 0.00 4.79
5167 5652 3.991773 CTGAAGGAATAACGTTTGGTCGA 59.008 43.478 5.91 0.00 34.70 4.20
5168 5653 4.571919 TGAAGGAATAACGTTTGGTCGAT 58.428 39.130 5.91 0.00 34.70 3.59
5169 5654 4.628333 TGAAGGAATAACGTTTGGTCGATC 59.372 41.667 5.91 4.58 34.70 3.69
5170 5655 3.184541 AGGAATAACGTTTGGTCGATCG 58.815 45.455 9.36 9.36 34.70 3.69
5171 5656 2.283351 GGAATAACGTTTGGTCGATCGG 59.717 50.000 16.41 0.00 34.70 4.18
5172 5657 2.660189 ATAACGTTTGGTCGATCGGT 57.340 45.000 16.41 0.00 34.70 4.69
5173 5658 3.781079 ATAACGTTTGGTCGATCGGTA 57.219 42.857 16.41 0.00 34.70 4.02
5174 5659 1.986698 AACGTTTGGTCGATCGGTAG 58.013 50.000 16.41 2.98 34.70 3.18
5175 5660 0.457337 ACGTTTGGTCGATCGGTAGC 60.457 55.000 16.41 7.18 34.70 3.58
5176 5661 0.179145 CGTTTGGTCGATCGGTAGCT 60.179 55.000 16.41 0.00 0.00 3.32
5177 5662 1.734707 CGTTTGGTCGATCGGTAGCTT 60.735 52.381 16.41 0.00 0.00 3.74
5178 5663 2.344025 GTTTGGTCGATCGGTAGCTTT 58.656 47.619 16.41 0.00 0.00 3.51
5179 5664 2.004583 TTGGTCGATCGGTAGCTTTG 57.995 50.000 16.41 0.00 0.00 2.77
5180 5665 1.179152 TGGTCGATCGGTAGCTTTGA 58.821 50.000 16.41 0.00 0.00 2.69
5181 5666 1.754803 TGGTCGATCGGTAGCTTTGAT 59.245 47.619 16.41 0.00 0.00 2.57
5182 5667 2.128035 GGTCGATCGGTAGCTTTGATG 58.872 52.381 16.41 0.00 0.00 3.07
5183 5668 1.523095 GTCGATCGGTAGCTTTGATGC 59.477 52.381 16.41 0.00 0.00 3.91
5184 5669 1.136110 TCGATCGGTAGCTTTGATGCA 59.864 47.619 16.41 0.00 34.99 3.96
5185 5670 1.933181 CGATCGGTAGCTTTGATGCAA 59.067 47.619 7.38 0.00 34.99 4.08
5186 5671 2.285834 CGATCGGTAGCTTTGATGCAAC 60.286 50.000 7.38 0.00 34.99 4.17
5187 5672 1.448985 TCGGTAGCTTTGATGCAACC 58.551 50.000 0.00 0.00 34.99 3.77
5188 5673 0.451783 CGGTAGCTTTGATGCAACCC 59.548 55.000 0.00 0.00 34.99 4.11
5189 5674 0.817654 GGTAGCTTTGATGCAACCCC 59.182 55.000 0.00 0.00 34.99 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.686334 AGTGTCAACTATTGATGTCTTTGTTTT 58.314 29.630 0.00 0.00 42.47 2.43
50 52 3.563808 CCGTGGAGTGAACAAGATCAAAA 59.436 43.478 0.00 0.00 0.00 2.44
69 71 2.859165 AATGGTTCTCATGTGTCCGT 57.141 45.000 0.00 0.00 35.99 4.69
70 72 4.503741 AAAAATGGTTCTCATGTGTCCG 57.496 40.909 0.00 0.00 35.99 4.79
129 133 4.878397 CCGGCAACAGATCTTCTTCTAAAT 59.122 41.667 0.00 0.00 0.00 1.40
132 136 2.168521 CCCGGCAACAGATCTTCTTCTA 59.831 50.000 0.00 0.00 0.00 2.10
145 149 3.859411 TTTCATGATTAACCCGGCAAC 57.141 42.857 0.00 0.00 0.00 4.17
178 183 6.139671 AGTAGTCTTGGTCATGGATGTATCT 58.860 40.000 0.00 0.00 0.00 1.98
193 198 0.736325 CGTTGGCGGGAGTAGTCTTG 60.736 60.000 0.00 0.00 0.00 3.02
206 211 1.601903 TGAGTTTGATGTGTCGTTGGC 59.398 47.619 0.00 0.00 0.00 4.52
217 222 6.215845 GTGGTGTGCTTTTATTGAGTTTGAT 58.784 36.000 0.00 0.00 0.00 2.57
220 225 4.649218 AGGTGGTGTGCTTTTATTGAGTTT 59.351 37.500 0.00 0.00 0.00 2.66
228 233 0.847373 TGGGAGGTGGTGTGCTTTTA 59.153 50.000 0.00 0.00 0.00 1.52
239 244 1.821753 TGTGTTTGTGTTTGGGAGGTG 59.178 47.619 0.00 0.00 0.00 4.00
241 246 1.202245 CGTGTGTTTGTGTTTGGGAGG 60.202 52.381 0.00 0.00 0.00 4.30
243 248 0.811915 CCGTGTGTTTGTGTTTGGGA 59.188 50.000 0.00 0.00 0.00 4.37
244 249 0.179124 CCCGTGTGTTTGTGTTTGGG 60.179 55.000 0.00 0.00 0.00 4.12
266 272 0.179045 CGGCTTTCAGATGGGGTAGG 60.179 60.000 0.00 0.00 0.00 3.18
267 273 0.830648 TCGGCTTTCAGATGGGGTAG 59.169 55.000 0.00 0.00 0.00 3.18
268 274 0.539986 GTCGGCTTTCAGATGGGGTA 59.460 55.000 0.00 0.00 0.00 3.69
271 278 2.280628 GTAAGTCGGCTTTCAGATGGG 58.719 52.381 7.97 0.00 36.22 4.00
277 284 1.689813 TGTCTGGTAAGTCGGCTTTCA 59.310 47.619 7.97 6.45 36.22 2.69
278 285 2.450609 TGTCTGGTAAGTCGGCTTTC 57.549 50.000 7.97 1.72 36.22 2.62
284 291 3.364964 GCCATTGTTTGTCTGGTAAGTCG 60.365 47.826 0.00 0.00 32.42 4.18
296 303 2.223249 CCGGTAGAATCGCCATTGTTTG 60.223 50.000 0.00 0.00 0.00 2.93
297 304 2.014128 CCGGTAGAATCGCCATTGTTT 58.986 47.619 0.00 0.00 0.00 2.83
298 305 1.663695 CCGGTAGAATCGCCATTGTT 58.336 50.000 0.00 0.00 0.00 2.83
299 306 0.179056 CCCGGTAGAATCGCCATTGT 60.179 55.000 0.00 0.00 0.00 2.71
300 307 1.507141 GCCCGGTAGAATCGCCATTG 61.507 60.000 0.00 0.00 0.00 2.82
301 308 1.227853 GCCCGGTAGAATCGCCATT 60.228 57.895 0.00 0.00 0.00 3.16
302 309 1.768684 ATGCCCGGTAGAATCGCCAT 61.769 55.000 0.00 0.00 0.00 4.40
303 310 2.439960 ATGCCCGGTAGAATCGCCA 61.440 57.895 0.00 0.00 0.00 5.69
304 311 1.961277 CATGCCCGGTAGAATCGCC 60.961 63.158 0.00 0.00 0.00 5.54
305 312 2.607892 GCATGCCCGGTAGAATCGC 61.608 63.158 6.36 0.00 0.00 4.58
306 313 0.532862 AAGCATGCCCGGTAGAATCG 60.533 55.000 15.66 0.00 0.00 3.34
307 314 1.230324 GAAGCATGCCCGGTAGAATC 58.770 55.000 15.66 0.00 0.00 2.52
308 315 0.546122 TGAAGCATGCCCGGTAGAAT 59.454 50.000 15.66 0.00 0.00 2.40
309 316 0.326595 TTGAAGCATGCCCGGTAGAA 59.673 50.000 15.66 0.00 0.00 2.10
310 317 0.392461 GTTGAAGCATGCCCGGTAGA 60.392 55.000 15.66 0.00 0.00 2.59
311 318 0.676466 TGTTGAAGCATGCCCGGTAG 60.676 55.000 15.66 0.00 0.00 3.18
312 319 0.676466 CTGTTGAAGCATGCCCGGTA 60.676 55.000 15.66 0.00 0.00 4.02
313 320 1.973281 CTGTTGAAGCATGCCCGGT 60.973 57.895 15.66 0.00 0.00 5.28
314 321 2.703798 CCTGTTGAAGCATGCCCGG 61.704 63.158 15.66 0.00 0.00 5.73
315 322 2.879907 CCTGTTGAAGCATGCCCG 59.120 61.111 15.66 0.00 0.00 6.13
316 323 1.941999 GAGCCTGTTGAAGCATGCCC 61.942 60.000 15.66 7.45 31.74 5.36
317 324 1.246056 TGAGCCTGTTGAAGCATGCC 61.246 55.000 15.66 0.00 31.74 4.40
318 325 0.599558 TTGAGCCTGTTGAAGCATGC 59.400 50.000 10.51 10.51 0.00 4.06
319 326 1.402456 GCTTGAGCCTGTTGAAGCATG 60.402 52.381 0.00 0.00 40.47 4.06
320 327 0.886563 GCTTGAGCCTGTTGAAGCAT 59.113 50.000 0.00 0.00 40.47 3.79
321 328 0.466007 TGCTTGAGCCTGTTGAAGCA 60.466 50.000 3.97 3.97 46.49 3.91
322 329 0.886563 ATGCTTGAGCCTGTTGAAGC 59.113 50.000 0.00 0.00 41.03 3.86
323 330 1.402456 GCATGCTTGAGCCTGTTGAAG 60.402 52.381 11.37 0.00 38.63 3.02
324 331 0.599558 GCATGCTTGAGCCTGTTGAA 59.400 50.000 11.37 0.00 38.63 2.69
325 332 0.251033 AGCATGCTTGAGCCTGTTGA 60.251 50.000 16.30 0.00 38.63 3.18
326 333 0.170561 GAGCATGCTTGAGCCTGTTG 59.829 55.000 23.61 0.61 38.63 3.33
327 334 0.964358 GGAGCATGCTTGAGCCTGTT 60.964 55.000 23.61 4.10 38.63 3.16
328 335 1.378250 GGAGCATGCTTGAGCCTGT 60.378 57.895 23.61 0.00 38.63 4.00
329 336 1.077644 AGGAGCATGCTTGAGCCTG 60.078 57.895 23.61 2.24 41.18 4.85
330 337 1.224039 GAGGAGCATGCTTGAGCCT 59.776 57.895 23.61 22.77 36.27 4.58
331 338 1.096386 CAGAGGAGCATGCTTGAGCC 61.096 60.000 23.61 18.13 36.27 4.70
332 339 0.107800 TCAGAGGAGCATGCTTGAGC 60.108 55.000 23.61 8.75 36.27 4.26
333 340 2.398252 TTCAGAGGAGCATGCTTGAG 57.602 50.000 23.61 10.62 36.27 3.02
334 341 2.865119 TTTCAGAGGAGCATGCTTGA 57.135 45.000 23.61 18.36 36.27 3.02
335 342 3.442625 TCAATTTCAGAGGAGCATGCTTG 59.557 43.478 23.61 16.16 36.27 4.01
336 343 3.693807 TCAATTTCAGAGGAGCATGCTT 58.306 40.909 23.61 6.63 36.27 3.91
337 344 3.361281 TCAATTTCAGAGGAGCATGCT 57.639 42.857 22.92 22.92 42.52 3.79
338 345 4.445452 TTTCAATTTCAGAGGAGCATGC 57.555 40.909 10.51 10.51 0.00 4.06
339 346 6.218019 TGTTTTTCAATTTCAGAGGAGCATG 58.782 36.000 0.00 0.00 0.00 4.06
340 347 6.409524 TGTTTTTCAATTTCAGAGGAGCAT 57.590 33.333 0.00 0.00 0.00 3.79
341 348 5.850557 TGTTTTTCAATTTCAGAGGAGCA 57.149 34.783 0.00 0.00 0.00 4.26
342 349 7.538303 TTTTGTTTTTCAATTTCAGAGGAGC 57.462 32.000 0.00 0.00 35.84 4.70
376 383 3.567397 GACTGAGATGGGCTAGGAACTA 58.433 50.000 0.00 0.00 41.75 2.24
377 384 2.393646 GACTGAGATGGGCTAGGAACT 58.606 52.381 0.00 0.00 46.37 3.01
378 385 1.414550 GGACTGAGATGGGCTAGGAAC 59.585 57.143 0.00 0.00 0.00 3.62
379 386 1.008327 TGGACTGAGATGGGCTAGGAA 59.992 52.381 0.00 0.00 0.00 3.36
380 387 0.636647 TGGACTGAGATGGGCTAGGA 59.363 55.000 0.00 0.00 0.00 2.94
381 388 0.755686 GTGGACTGAGATGGGCTAGG 59.244 60.000 0.00 0.00 0.00 3.02
382 389 1.411977 CAGTGGACTGAGATGGGCTAG 59.588 57.143 0.04 0.00 46.59 3.42
383 390 1.273267 ACAGTGGACTGAGATGGGCTA 60.273 52.381 13.74 0.00 46.59 3.93
384 391 0.546267 ACAGTGGACTGAGATGGGCT 60.546 55.000 13.74 0.00 46.59 5.19
385 392 0.107945 GACAGTGGACTGAGATGGGC 60.108 60.000 13.74 0.00 46.59 5.36
386 393 1.566211 AGACAGTGGACTGAGATGGG 58.434 55.000 13.74 0.00 46.59 4.00
387 394 2.301296 ACAAGACAGTGGACTGAGATGG 59.699 50.000 13.74 2.13 46.59 3.51
388 395 3.244009 ACACAAGACAGTGGACTGAGATG 60.244 47.826 13.74 10.31 46.59 2.90
389 396 2.968574 ACACAAGACAGTGGACTGAGAT 59.031 45.455 13.74 0.00 46.59 2.75
390 397 2.362397 GACACAAGACAGTGGACTGAGA 59.638 50.000 13.74 0.00 46.59 3.27
391 398 2.363680 AGACACAAGACAGTGGACTGAG 59.636 50.000 13.74 3.41 46.59 3.35
392 399 2.388735 AGACACAAGACAGTGGACTGA 58.611 47.619 13.74 0.00 46.59 3.41
394 401 2.297597 GCTAGACACAAGACAGTGGACT 59.702 50.000 0.00 0.00 43.72 3.85
395 402 2.610727 GGCTAGACACAAGACAGTGGAC 60.611 54.545 0.00 0.00 43.72 4.02
396 403 1.618837 GGCTAGACACAAGACAGTGGA 59.381 52.381 0.00 0.00 43.72 4.02
397 404 1.620819 AGGCTAGACACAAGACAGTGG 59.379 52.381 0.00 0.00 43.72 4.00
398 405 2.036475 ACAGGCTAGACACAAGACAGTG 59.964 50.000 0.00 0.00 44.93 3.66
399 406 2.036475 CACAGGCTAGACACAAGACAGT 59.964 50.000 0.00 0.00 0.00 3.55
400 407 2.036475 ACACAGGCTAGACACAAGACAG 59.964 50.000 0.00 0.00 0.00 3.51
401 408 2.035961 GACACAGGCTAGACACAAGACA 59.964 50.000 0.00 0.00 0.00 3.41
402 409 2.297597 AGACACAGGCTAGACACAAGAC 59.702 50.000 0.00 0.00 0.00 3.01
403 410 2.598565 AGACACAGGCTAGACACAAGA 58.401 47.619 0.00 0.00 0.00 3.02
404 411 3.674682 GCTAGACACAGGCTAGACACAAG 60.675 52.174 10.99 0.00 38.03 3.16
405 412 2.231478 GCTAGACACAGGCTAGACACAA 59.769 50.000 10.99 0.00 38.03 3.33
406 413 1.819288 GCTAGACACAGGCTAGACACA 59.181 52.381 10.99 0.00 38.03 3.72
407 414 1.135333 GGCTAGACACAGGCTAGACAC 59.865 57.143 10.99 0.00 42.38 3.67
408 415 1.475403 GGCTAGACACAGGCTAGACA 58.525 55.000 10.99 0.00 42.38 3.41
414 421 1.449246 CAGCAGGCTAGACACAGGC 60.449 63.158 0.00 0.00 41.27 4.85
415 422 0.322975 AACAGCAGGCTAGACACAGG 59.677 55.000 0.00 0.00 0.00 4.00
416 423 2.175878 AAACAGCAGGCTAGACACAG 57.824 50.000 0.00 0.00 0.00 3.66
417 424 2.289444 GGTAAACAGCAGGCTAGACACA 60.289 50.000 0.00 0.00 0.00 3.72
418 425 2.347731 GGTAAACAGCAGGCTAGACAC 58.652 52.381 0.00 0.00 0.00 3.67
419 426 1.278127 GGGTAAACAGCAGGCTAGACA 59.722 52.381 0.00 0.00 0.00 3.41
420 427 1.739371 CGGGTAAACAGCAGGCTAGAC 60.739 57.143 0.00 0.00 0.00 2.59
421 428 0.535335 CGGGTAAACAGCAGGCTAGA 59.465 55.000 0.00 0.00 0.00 2.43
422 429 0.249398 ACGGGTAAACAGCAGGCTAG 59.751 55.000 0.00 0.00 0.00 3.42
423 430 0.688487 AACGGGTAAACAGCAGGCTA 59.312 50.000 0.00 0.00 0.00 3.93
424 431 0.605589 GAACGGGTAAACAGCAGGCT 60.606 55.000 0.00 0.00 0.00 4.58
425 432 1.583495 GGAACGGGTAAACAGCAGGC 61.583 60.000 0.00 0.00 0.00 4.85
426 433 0.250553 TGGAACGGGTAAACAGCAGG 60.251 55.000 0.00 0.00 0.00 4.85
427 434 1.265905 GTTGGAACGGGTAAACAGCAG 59.734 52.381 0.00 0.00 0.00 4.24
428 435 1.310904 GTTGGAACGGGTAAACAGCA 58.689 50.000 0.00 0.00 0.00 4.41
429 436 0.594602 GGTTGGAACGGGTAAACAGC 59.405 55.000 0.00 0.00 0.00 4.40
430 437 1.202842 AGGGTTGGAACGGGTAAACAG 60.203 52.381 0.00 0.00 0.00 3.16
431 438 0.845337 AGGGTTGGAACGGGTAAACA 59.155 50.000 0.00 0.00 0.00 2.83
432 439 1.610038 CAAGGGTTGGAACGGGTAAAC 59.390 52.381 0.00 0.00 0.00 2.01
433 440 1.214923 ACAAGGGTTGGAACGGGTAAA 59.785 47.619 0.00 0.00 34.12 2.01
434 441 0.845337 ACAAGGGTTGGAACGGGTAA 59.155 50.000 0.00 0.00 34.12 2.85
435 442 1.347378 GTACAAGGGTTGGAACGGGTA 59.653 52.381 0.00 0.00 34.12 3.69
436 443 0.109153 GTACAAGGGTTGGAACGGGT 59.891 55.000 0.00 0.00 34.12 5.28
437 444 0.399075 AGTACAAGGGTTGGAACGGG 59.601 55.000 0.00 0.00 34.12 5.28
438 445 2.265589 AAGTACAAGGGTTGGAACGG 57.734 50.000 0.00 0.00 34.12 4.44
439 446 4.261578 TCTAAGTACAAGGGTTGGAACG 57.738 45.455 0.00 0.00 34.12 3.95
440 447 5.618236 ACTTCTAAGTACAAGGGTTGGAAC 58.382 41.667 0.00 0.00 37.52 3.62
441 448 5.899631 ACTTCTAAGTACAAGGGTTGGAA 57.100 39.130 0.00 0.00 37.52 3.53
442 449 5.367352 TCAACTTCTAAGTACAAGGGTTGGA 59.633 40.000 20.45 5.17 38.57 3.53
443 450 5.617252 TCAACTTCTAAGTACAAGGGTTGG 58.383 41.667 20.45 3.47 38.57 3.77
444 451 5.179555 GCTCAACTTCTAAGTACAAGGGTTG 59.820 44.000 17.82 17.82 38.57 3.77
445 452 5.306394 GCTCAACTTCTAAGTACAAGGGTT 58.694 41.667 0.00 0.00 38.57 4.11
446 453 4.262938 GGCTCAACTTCTAAGTACAAGGGT 60.263 45.833 0.00 0.00 38.57 4.34
447 454 4.020128 AGGCTCAACTTCTAAGTACAAGGG 60.020 45.833 0.00 0.00 38.57 3.95
448 455 4.932200 CAGGCTCAACTTCTAAGTACAAGG 59.068 45.833 0.00 0.00 38.57 3.61
449 456 5.542779 ACAGGCTCAACTTCTAAGTACAAG 58.457 41.667 0.00 0.00 38.57 3.16
450 457 5.510861 GGACAGGCTCAACTTCTAAGTACAA 60.511 44.000 0.00 0.00 38.57 2.41
451 458 4.021368 GGACAGGCTCAACTTCTAAGTACA 60.021 45.833 0.00 0.00 38.57 2.90
452 459 4.221041 AGGACAGGCTCAACTTCTAAGTAC 59.779 45.833 0.00 0.00 38.57 2.73
453 460 4.417437 AGGACAGGCTCAACTTCTAAGTA 58.583 43.478 0.00 0.00 38.57 2.24
454 461 3.243724 AGGACAGGCTCAACTTCTAAGT 58.756 45.455 0.00 0.00 42.04 2.24
455 462 3.971245 AGGACAGGCTCAACTTCTAAG 57.029 47.619 0.00 0.00 0.00 2.18
456 463 3.646162 TGAAGGACAGGCTCAACTTCTAA 59.354 43.478 17.31 2.15 38.60 2.10
457 464 3.239449 TGAAGGACAGGCTCAACTTCTA 58.761 45.455 17.31 6.47 38.60 2.10
458 465 2.050144 TGAAGGACAGGCTCAACTTCT 58.950 47.619 17.31 0.00 38.60 2.85
459 466 2.550830 TGAAGGACAGGCTCAACTTC 57.449 50.000 12.27 12.27 38.36 3.01
460 467 3.515602 AATGAAGGACAGGCTCAACTT 57.484 42.857 0.00 0.00 0.00 2.66
461 468 3.515602 AAATGAAGGACAGGCTCAACT 57.484 42.857 0.00 0.00 0.00 3.16
462 469 3.569701 TGAAAATGAAGGACAGGCTCAAC 59.430 43.478 0.00 0.00 0.00 3.18
463 470 3.831323 TGAAAATGAAGGACAGGCTCAA 58.169 40.909 0.00 0.00 0.00 3.02
464 471 3.507162 TGAAAATGAAGGACAGGCTCA 57.493 42.857 0.00 0.00 0.00 4.26
465 472 3.379688 GGATGAAAATGAAGGACAGGCTC 59.620 47.826 0.00 0.00 0.00 4.70
466 473 3.245371 TGGATGAAAATGAAGGACAGGCT 60.245 43.478 0.00 0.00 0.00 4.58
467 474 3.091545 TGGATGAAAATGAAGGACAGGC 58.908 45.455 0.00 0.00 0.00 4.85
468 475 5.012239 TCTTGGATGAAAATGAAGGACAGG 58.988 41.667 0.00 0.00 0.00 4.00
469 476 6.770746 ATCTTGGATGAAAATGAAGGACAG 57.229 37.500 0.00 0.00 0.00 3.51
470 477 6.127925 CGAATCTTGGATGAAAATGAAGGACA 60.128 38.462 0.00 0.00 0.00 4.02
471 478 6.261118 CGAATCTTGGATGAAAATGAAGGAC 58.739 40.000 0.00 0.00 0.00 3.85
472 479 5.163622 GCGAATCTTGGATGAAAATGAAGGA 60.164 40.000 0.00 0.00 0.00 3.36
473 480 5.039333 GCGAATCTTGGATGAAAATGAAGG 58.961 41.667 0.00 0.00 0.00 3.46
474 481 5.039333 GGCGAATCTTGGATGAAAATGAAG 58.961 41.667 0.00 0.00 0.00 3.02
475 482 4.462132 TGGCGAATCTTGGATGAAAATGAA 59.538 37.500 0.00 0.00 0.00 2.57
476 483 4.015764 TGGCGAATCTTGGATGAAAATGA 58.984 39.130 0.00 0.00 0.00 2.57
477 484 4.107622 GTGGCGAATCTTGGATGAAAATG 58.892 43.478 0.00 0.00 0.00 2.32
478 485 4.019174 AGTGGCGAATCTTGGATGAAAAT 58.981 39.130 0.00 0.00 0.00 1.82
479 486 3.191162 CAGTGGCGAATCTTGGATGAAAA 59.809 43.478 0.00 0.00 0.00 2.29
480 487 2.749076 CAGTGGCGAATCTTGGATGAAA 59.251 45.455 0.00 0.00 0.00 2.69
481 488 2.290260 ACAGTGGCGAATCTTGGATGAA 60.290 45.455 0.00 0.00 0.00 2.57
482 489 1.278985 ACAGTGGCGAATCTTGGATGA 59.721 47.619 0.00 0.00 0.00 2.92
483 490 1.742761 ACAGTGGCGAATCTTGGATG 58.257 50.000 0.00 0.00 0.00 3.51
484 491 2.086869 CAACAGTGGCGAATCTTGGAT 58.913 47.619 0.00 0.00 0.00 3.41
485 492 1.522668 CAACAGTGGCGAATCTTGGA 58.477 50.000 0.00 0.00 0.00 3.53
486 493 0.523072 CCAACAGTGGCGAATCTTGG 59.477 55.000 0.00 0.00 38.35 3.61
505 512 0.733150 GGTCCATACGGCTTCTTTGC 59.267 55.000 0.00 0.00 0.00 3.68
506 513 2.403252 AGGTCCATACGGCTTCTTTG 57.597 50.000 0.00 0.00 0.00 2.77
514 521 4.258543 ACATGTTAACAAGGTCCATACGG 58.741 43.478 13.23 0.00 0.00 4.02
528 535 3.196254 GGAACCGAGGGAGTACATGTTAA 59.804 47.826 2.30 0.00 0.00 2.01
592 599 9.838339 CTCCCTTCAGTTCATATTAAGTTATGT 57.162 33.333 0.00 0.00 32.49 2.29
593 600 9.838339 ACTCCCTTCAGTTCATATTAAGTTATG 57.162 33.333 0.00 0.00 0.00 1.90
604 611 6.265422 CCTTTTGTTTACTCCCTTCAGTTCAT 59.735 38.462 0.00 0.00 0.00 2.57
609 616 6.003950 TCATCCTTTTGTTTACTCCCTTCAG 58.996 40.000 0.00 0.00 0.00 3.02
610 617 5.947663 TCATCCTTTTGTTTACTCCCTTCA 58.052 37.500 0.00 0.00 0.00 3.02
638 645 2.689553 ACACACGTGATGATATGGCA 57.310 45.000 25.01 0.00 0.00 4.92
656 663 2.768833 TCATGTCGAGCGGTGTATAC 57.231 50.000 0.00 0.00 0.00 1.47
658 665 2.540515 CTTTCATGTCGAGCGGTGTAT 58.459 47.619 0.00 0.00 0.00 2.29
662 669 0.892755 TACCTTTCATGTCGAGCGGT 59.107 50.000 0.00 0.00 33.85 5.68
677 684 8.603304 ACTGTTGGATTACAAGATAACTTACCT 58.397 33.333 0.00 0.00 40.38 3.08
681 688 9.520515 AATGACTGTTGGATTACAAGATAACTT 57.479 29.630 0.00 0.00 40.38 2.66
691 698 8.878769 ACAAAACAAAAATGACTGTTGGATTAC 58.121 29.630 0.00 0.00 35.95 1.89
698 705 7.721286 TTGTCACAAAACAAAAATGACTGTT 57.279 28.000 0.00 0.00 40.28 3.16
732 739 4.320202 CCCTTTTTCACCTGTGTTCGTATG 60.320 45.833 0.00 0.00 0.00 2.39
743 1034 4.536295 TTTCTCCTTCCCTTTTTCACCT 57.464 40.909 0.00 0.00 0.00 4.00
755 1046 6.149129 ACTCATTTGTGGTTTTTCTCCTTC 57.851 37.500 0.00 0.00 0.00 3.46
757 1048 5.221048 CGAACTCATTTGTGGTTTTTCTCCT 60.221 40.000 0.00 0.00 0.00 3.69
758 1049 4.976116 CGAACTCATTTGTGGTTTTTCTCC 59.024 41.667 0.00 0.00 0.00 3.71
761 1052 6.507929 GCTTTCGAACTCATTTGTGGTTTTTC 60.508 38.462 0.00 0.00 0.00 2.29
767 1058 3.558505 CTGCTTTCGAACTCATTTGTGG 58.441 45.455 0.00 0.00 0.00 4.17
774 1065 2.038426 TGGATTCCTGCTTTCGAACTCA 59.962 45.455 0.00 0.00 0.00 3.41
775 1066 2.699954 TGGATTCCTGCTTTCGAACTC 58.300 47.619 0.00 0.00 0.00 3.01
779 1070 4.199310 CCTTAATGGATTCCTGCTTTCGA 58.801 43.478 3.95 0.00 38.35 3.71
791 1082 2.505819 ACCGAACAGAGCCTTAATGGAT 59.494 45.455 0.00 0.00 38.35 3.41
792 1083 1.906574 ACCGAACAGAGCCTTAATGGA 59.093 47.619 0.00 0.00 38.35 3.41
793 1084 2.403252 ACCGAACAGAGCCTTAATGG 57.597 50.000 0.00 0.00 39.35 3.16
795 1086 5.123936 GGATTAACCGAACAGAGCCTTAAT 58.876 41.667 0.00 0.00 0.00 1.40
796 1087 4.510571 GGATTAACCGAACAGAGCCTTAA 58.489 43.478 0.00 0.00 0.00 1.85
798 1089 2.355818 GGGATTAACCGAACAGAGCCTT 60.356 50.000 0.00 0.00 40.11 4.35
800 1091 1.065709 TGGGATTAACCGAACAGAGCC 60.066 52.381 0.00 0.00 40.11 4.70
801 1092 2.396590 TGGGATTAACCGAACAGAGC 57.603 50.000 0.00 0.00 40.11 4.09
802 1093 3.467803 GGATGGGATTAACCGAACAGAG 58.532 50.000 0.00 0.00 40.11 3.35
803 1094 2.171870 GGGATGGGATTAACCGAACAGA 59.828 50.000 0.00 0.00 40.11 3.41
804 1095 2.172717 AGGGATGGGATTAACCGAACAG 59.827 50.000 0.00 0.00 40.11 3.16
805 1096 2.201830 AGGGATGGGATTAACCGAACA 58.798 47.619 0.00 0.00 40.11 3.18
806 1097 3.244457 CCTAGGGATGGGATTAACCGAAC 60.244 52.174 0.00 0.00 40.11 3.95
807 1098 2.976882 CCTAGGGATGGGATTAACCGAA 59.023 50.000 0.00 0.00 40.11 4.30
808 1099 2.090380 ACCTAGGGATGGGATTAACCGA 60.090 50.000 14.81 0.00 40.11 4.69
809 1100 2.038557 CACCTAGGGATGGGATTAACCG 59.961 54.545 14.81 0.00 40.11 4.44
810 1101 2.375509 CCACCTAGGGATGGGATTAACC 59.624 54.545 14.81 0.00 38.08 2.85
811 1102 3.323775 TCCACCTAGGGATGGGATTAAC 58.676 50.000 14.81 0.00 36.56 2.01
812 1103 3.736227 TCCACCTAGGGATGGGATTAA 57.264 47.619 14.81 0.00 36.56 1.40
813 1104 3.916349 CAATCCACCTAGGGATGGGATTA 59.084 47.826 25.89 8.70 46.96 1.75
814 1105 2.718609 CAATCCACCTAGGGATGGGATT 59.281 50.000 23.10 23.10 46.96 3.01
815 1106 2.352371 CAATCCACCTAGGGATGGGAT 58.648 52.381 14.81 15.83 46.96 3.85
816 1107 1.819753 CAATCCACCTAGGGATGGGA 58.180 55.000 14.81 14.25 46.96 4.37
818 1109 1.701847 CTCCAATCCACCTAGGGATGG 59.298 57.143 14.81 12.95 46.96 3.51
819 1110 1.701847 CCTCCAATCCACCTAGGGATG 59.298 57.143 14.81 2.73 46.96 3.51
821 1112 0.694444 GCCTCCAATCCACCTAGGGA 60.694 60.000 14.81 1.39 42.21 4.20
822 1113 1.839894 GCCTCCAATCCACCTAGGG 59.160 63.158 14.81 1.73 38.24 3.53
823 1114 1.048724 TCGCCTCCAATCCACCTAGG 61.049 60.000 7.41 7.41 39.47 3.02
824 1115 1.051812 ATCGCCTCCAATCCACCTAG 58.948 55.000 0.00 0.00 0.00 3.02
825 1116 1.507140 AATCGCCTCCAATCCACCTA 58.493 50.000 0.00 0.00 0.00 3.08
826 1117 0.625849 AAATCGCCTCCAATCCACCT 59.374 50.000 0.00 0.00 0.00 4.00
827 1118 0.740737 CAAATCGCCTCCAATCCACC 59.259 55.000 0.00 0.00 0.00 4.61
828 1119 1.750193 TCAAATCGCCTCCAATCCAC 58.250 50.000 0.00 0.00 0.00 4.02
829 1120 2.505650 TTCAAATCGCCTCCAATCCA 57.494 45.000 0.00 0.00 0.00 3.41
830 1121 2.035066 CCATTCAAATCGCCTCCAATCC 59.965 50.000 0.00 0.00 0.00 3.01
831 1122 2.035066 CCCATTCAAATCGCCTCCAATC 59.965 50.000 0.00 0.00 0.00 2.67
832 1123 2.034124 CCCATTCAAATCGCCTCCAAT 58.966 47.619 0.00 0.00 0.00 3.16
833 1124 1.005332 TCCCATTCAAATCGCCTCCAA 59.995 47.619 0.00 0.00 0.00 3.53
834 1125 0.623194 TCCCATTCAAATCGCCTCCA 59.377 50.000 0.00 0.00 0.00 3.86
835 1126 1.762708 TTCCCATTCAAATCGCCTCC 58.237 50.000 0.00 0.00 0.00 4.30
836 1127 2.294512 GGATTCCCATTCAAATCGCCTC 59.705 50.000 0.00 0.00 33.57 4.70
837 1128 2.310538 GGATTCCCATTCAAATCGCCT 58.689 47.619 0.00 0.00 33.57 5.52
838 1129 1.001378 CGGATTCCCATTCAAATCGCC 60.001 52.381 0.00 0.00 33.57 5.54
839 1130 1.946768 TCGGATTCCCATTCAAATCGC 59.053 47.619 0.00 0.00 33.57 4.58
840 1131 2.290641 GGTCGGATTCCCATTCAAATCG 59.709 50.000 0.00 0.00 33.57 3.34
841 1132 2.623416 GGGTCGGATTCCCATTCAAATC 59.377 50.000 0.00 0.00 44.05 2.17
842 1133 2.666317 GGGTCGGATTCCCATTCAAAT 58.334 47.619 0.00 0.00 44.05 2.32
843 1134 1.680555 CGGGTCGGATTCCCATTCAAA 60.681 52.381 4.72 0.00 44.81 2.69
844 1135 0.107410 CGGGTCGGATTCCCATTCAA 60.107 55.000 4.72 0.00 44.81 2.69
845 1136 1.524961 CGGGTCGGATTCCCATTCA 59.475 57.895 4.72 0.00 44.81 2.57
846 1137 1.892391 GCGGGTCGGATTCCCATTC 60.892 63.158 4.72 0.00 44.81 2.67
847 1138 1.052124 TAGCGGGTCGGATTCCCATT 61.052 55.000 4.72 0.00 44.81 3.16
848 1139 1.052124 TTAGCGGGTCGGATTCCCAT 61.052 55.000 4.72 0.00 44.81 4.00
849 1140 1.266160 TTTAGCGGGTCGGATTCCCA 61.266 55.000 4.72 0.00 44.81 4.37
850 1141 0.532196 CTTTAGCGGGTCGGATTCCC 60.532 60.000 0.00 0.00 41.41 3.97
851 1142 0.462789 TCTTTAGCGGGTCGGATTCC 59.537 55.000 0.00 0.00 0.00 3.01
852 1143 1.136500 AGTCTTTAGCGGGTCGGATTC 59.864 52.381 0.00 0.00 0.00 2.52
853 1144 1.192428 AGTCTTTAGCGGGTCGGATT 58.808 50.000 0.00 0.00 0.00 3.01
866 1157 4.098914 TGCATTGTGGTCCTTAGTCTTT 57.901 40.909 0.00 0.00 0.00 2.52
869 1160 5.163652 GGTAATTGCATTGTGGTCCTTAGTC 60.164 44.000 0.00 0.00 0.00 2.59
1087 1378 0.522180 AGTAGGAACTCGCGTGACTG 59.478 55.000 16.04 0.00 41.75 3.51
1113 1404 7.330700 GGAGAACAGAACAGAGTAGATTTTGAG 59.669 40.741 0.00 0.00 0.00 3.02
1156 1447 2.423926 TGAAGAACAGACAGAGCGTC 57.576 50.000 0.00 0.00 45.77 5.19
1248 1541 1.456196 TTTTCCAATTGCCCACGCGA 61.456 50.000 15.93 0.00 38.08 5.87
1251 1544 0.670239 GCCTTTTCCAATTGCCCACG 60.670 55.000 0.00 0.00 0.00 4.94
1269 1562 2.820037 GCCGCACCTCCTAACAGC 60.820 66.667 0.00 0.00 0.00 4.40
1272 1565 2.202756 CGAGCCGCACCTCCTAAC 60.203 66.667 0.00 0.00 0.00 2.34
1285 1578 2.583685 GATTGAAGCAACCGCCGAGC 62.584 60.000 0.00 0.00 39.83 5.03
1289 1582 0.598065 AACTGATTGAAGCAACCGCC 59.402 50.000 0.00 0.00 39.83 6.13
1291 1584 3.058016 ACATGAACTGATTGAAGCAACCG 60.058 43.478 0.00 0.00 0.00 4.44
1350 1643 0.040958 GCCGAAGCGATTATGCCTTG 60.041 55.000 0.00 0.00 34.65 3.61
1363 1656 3.389206 GCGACTGCTAAGCCGAAG 58.611 61.111 0.00 0.00 38.39 3.79
1398 1695 3.376540 GACAAGTGCCTAGCTAAGATCG 58.623 50.000 0.00 0.00 0.00 3.69
1406 1703 0.391793 GACTGGGACAAGTGCCTAGC 60.392 60.000 12.07 0.00 42.12 3.42
1545 1842 5.163764 TGCAATTACTAGCCATGAAACGAAG 60.164 40.000 0.00 0.00 0.00 3.79
1590 1887 4.270245 TCATGTGCAGATACAGTCAACA 57.730 40.909 0.00 0.00 33.44 3.33
1658 1955 5.948162 ACCACATCAAAATCTGCTCAACTAT 59.052 36.000 0.00 0.00 0.00 2.12
1793 2182 7.264221 TGTCAAAGTACAGACGGTAACTAAAA 58.736 34.615 0.00 0.00 37.58 1.52
1962 2351 7.451877 CCAGGACAGTTAAGCTCTATATAGGAA 59.548 40.741 9.89 0.00 0.00 3.36
2042 2431 1.451936 GGCACAGGTGAGTCCAACT 59.548 57.895 3.10 0.00 42.04 3.16
2150 2540 2.825532 GGTTACCAGGCAAACATGATGT 59.174 45.455 0.00 0.00 0.00 3.06
2151 2541 2.824936 TGGTTACCAGGCAAACATGATG 59.175 45.455 0.00 0.00 0.00 3.07
2152 2542 3.168035 TGGTTACCAGGCAAACATGAT 57.832 42.857 0.00 0.00 0.00 2.45
2153 2543 2.666272 TGGTTACCAGGCAAACATGA 57.334 45.000 0.00 0.00 0.00 3.07
2157 2547 3.081710 ACCTATGGTTACCAGGCAAAC 57.918 47.619 10.74 0.00 36.75 2.93
2158 2548 3.818295 AACCTATGGTTACCAGGCAAA 57.182 42.857 10.74 0.00 44.94 3.68
2218 2612 8.839343 CACTCAACATATATTTCTATGTGGCAA 58.161 33.333 0.00 0.00 40.57 4.52
2271 2665 6.076981 ACATGACTTGTTCCATTCTTGAAC 57.923 37.500 0.00 0.00 41.91 3.18
2397 2791 1.035932 TCCCTGTAGCGGTGCTCTAC 61.036 60.000 3.95 0.00 40.44 2.59
2423 2817 1.268386 CGTGCAATTATCAGCTGGCAG 60.268 52.381 15.13 10.94 31.10 4.85
2445 2839 0.033642 TGGACGGTGTGATACGCAAA 59.966 50.000 0.00 0.00 0.00 3.68
2506 2900 4.000557 GTGCACGACACTGGCACG 62.001 66.667 0.00 0.00 46.94 5.34
2533 2927 3.619233 ATTTTGTACGGAAGCACACAC 57.381 42.857 0.00 0.00 37.04 3.82
2573 2972 8.747538 AATATATTTTCGGCAACTAGGAAAGT 57.252 30.769 0.00 0.00 41.49 2.66
2640 3039 6.767902 ACACATAGCTATAACACCATTTGAGG 59.232 38.462 5.77 0.00 0.00 3.86
2680 3079 8.243426 TGTATCTAAGTCATTCACAAAAATGGC 58.757 33.333 0.00 0.00 40.72 4.40
2783 3182 5.291971 ACAAGATGAATGGCAAAGAAACAC 58.708 37.500 0.00 0.00 0.00 3.32
2788 3187 7.288810 AGTTAAACAAGATGAATGGCAAAGA 57.711 32.000 0.00 0.00 0.00 2.52
3267 3666 0.259065 TCCAGGAGCGGATAGACTGT 59.741 55.000 0.00 0.00 0.00 3.55
3275 3674 2.060383 CATCACCTCCAGGAGCGGA 61.060 63.158 11.57 10.62 38.94 5.54
3593 3992 2.091555 TCCATGGGTACATAAAAGGGGC 60.092 50.000 13.02 0.00 34.99 5.80
3776 4175 0.947244 CAGATGGAAGGCGGCATTAC 59.053 55.000 13.08 1.95 0.00 1.89
3791 4190 1.342374 GGGAGAAACCAATGGCCAGAT 60.342 52.381 13.05 0.00 41.20 2.90
3852 4251 4.194640 AGGTGCTGCTGACATGTTATAAG 58.805 43.478 0.00 0.00 0.00 1.73
3858 4257 1.002868 GGAGGTGCTGCTGACATGT 60.003 57.895 0.00 0.00 0.00 3.21
4000 4399 1.682684 AGCTTCGTCGGGGTCATCT 60.683 57.895 0.00 0.00 0.00 2.90
4129 4528 2.480555 GGGTTCGCTTGCATGACG 59.519 61.111 3.33 6.90 0.00 4.35
4200 4599 6.548171 TGAAGAAAAGTAAAAACACGACAGG 58.452 36.000 0.00 0.00 0.00 4.00
4202 4601 6.525280 GCTTGAAGAAAAGTAAAAACACGACA 59.475 34.615 0.00 0.00 0.00 4.35
4250 4649 1.354040 CCGATCAGTGCTCAGACAAC 58.646 55.000 0.00 0.00 0.00 3.32
4320 4719 5.014228 AGGCTCTACAAGAAAATTACAGGGT 59.986 40.000 0.00 0.00 0.00 4.34
4377 4777 3.444703 TTGTACAACCAAACACATGCC 57.555 42.857 3.59 0.00 0.00 4.40
4539 4981 3.451540 AGAAGAGAAGCAGATGCATCAGA 59.548 43.478 27.81 0.00 45.16 3.27
4559 5001 6.009589 ACATACACACAAATTCCATTCCAGA 58.990 36.000 0.00 0.00 0.00 3.86
4893 5378 1.735386 CTGACACATCTGCTGGGAAG 58.265 55.000 0.00 0.00 30.50 3.46
4947 5432 1.475682 GGGAGCAAGCATTTTCAGGAG 59.524 52.381 0.00 0.00 0.00 3.69
4967 5452 2.445565 TCTACTTCAGTGCAGTGCAG 57.554 50.000 20.42 18.16 40.08 4.41
4968 5453 2.759191 CTTCTACTTCAGTGCAGTGCA 58.241 47.619 15.37 15.37 35.60 4.57
4969 5454 1.462670 GCTTCTACTTCAGTGCAGTGC 59.537 52.381 17.07 8.58 0.00 4.40
4970 5455 2.735663 CTGCTTCTACTTCAGTGCAGTG 59.264 50.000 15.76 15.76 42.40 3.66
4971 5456 3.037431 CTGCTTCTACTTCAGTGCAGT 57.963 47.619 0.02 0.02 42.40 4.40
4989 5474 7.627298 AGGACTACACTACTGTATTACACTG 57.373 40.000 0.00 0.00 32.21 3.66
4996 5481 5.584253 CTGCAAGGACTACACTACTGTAT 57.416 43.478 0.00 0.00 32.21 2.29
5049 5534 1.006922 TGAGAGTGCTGCAGTGACG 60.007 57.895 15.85 0.00 0.00 4.35
5056 5541 0.033228 AGTGACAGTGAGAGTGCTGC 59.967 55.000 0.00 0.00 36.26 5.25
5057 5542 1.780806 CAGTGACAGTGAGAGTGCTG 58.219 55.000 4.08 0.00 38.58 4.41
5059 5544 0.249615 TGCAGTGACAGTGAGAGTGC 60.250 55.000 14.64 15.05 0.00 4.40
5079 5564 5.335113 CGTTGATCATTCTGAAGAGGCAAAA 60.335 40.000 0.00 0.00 0.00 2.44
5080 5565 4.154737 CGTTGATCATTCTGAAGAGGCAAA 59.845 41.667 0.00 0.00 0.00 3.68
5081 5566 3.686241 CGTTGATCATTCTGAAGAGGCAA 59.314 43.478 0.00 0.00 0.00 4.52
5082 5567 3.264947 CGTTGATCATTCTGAAGAGGCA 58.735 45.455 0.00 0.00 0.00 4.75
5083 5568 3.265791 ACGTTGATCATTCTGAAGAGGC 58.734 45.455 0.00 0.00 0.00 4.70
5084 5569 5.391310 CCAAACGTTGATCATTCTGAAGAGG 60.391 44.000 0.00 0.00 0.00 3.69
5085 5570 5.180117 ACCAAACGTTGATCATTCTGAAGAG 59.820 40.000 0.00 0.00 0.00 2.85
5086 5571 5.063204 ACCAAACGTTGATCATTCTGAAGA 58.937 37.500 0.00 0.00 0.00 2.87
5087 5572 5.362556 ACCAAACGTTGATCATTCTGAAG 57.637 39.130 0.00 0.00 0.00 3.02
5088 5573 5.766150 AACCAAACGTTGATCATTCTGAA 57.234 34.783 0.00 0.00 31.79 3.02
5107 5592 2.102578 CCAACCTCCAATGGATCAACC 58.897 52.381 0.87 0.00 39.12 3.77
5108 5593 2.102578 CCCAACCTCCAATGGATCAAC 58.897 52.381 0.87 0.00 39.12 3.18
5109 5594 1.619432 GCCCAACCTCCAATGGATCAA 60.619 52.381 0.87 0.00 39.12 2.57
5110 5595 0.033208 GCCCAACCTCCAATGGATCA 60.033 55.000 0.87 0.00 39.12 2.92
5111 5596 1.103398 CGCCCAACCTCCAATGGATC 61.103 60.000 0.87 0.00 39.12 3.36
5112 5597 1.076777 CGCCCAACCTCCAATGGAT 60.077 57.895 0.87 0.00 39.12 3.41
5113 5598 2.354729 CGCCCAACCTCCAATGGA 59.645 61.111 0.48 0.48 39.12 3.41
5114 5599 3.451894 GCGCCCAACCTCCAATGG 61.452 66.667 0.00 0.00 36.42 3.16
5115 5600 1.606885 AATGCGCCCAACCTCCAATG 61.607 55.000 4.18 0.00 0.00 2.82
5116 5601 0.904394 AAATGCGCCCAACCTCCAAT 60.904 50.000 4.18 0.00 0.00 3.16
5117 5602 1.118356 AAAATGCGCCCAACCTCCAA 61.118 50.000 4.18 0.00 0.00 3.53
5118 5603 1.118356 AAAAATGCGCCCAACCTCCA 61.118 50.000 4.18 0.00 0.00 3.86
5119 5604 0.670239 CAAAAATGCGCCCAACCTCC 60.670 55.000 4.18 0.00 0.00 4.30
5120 5605 0.670239 CCAAAAATGCGCCCAACCTC 60.670 55.000 4.18 0.00 0.00 3.85
5121 5606 1.370810 CCAAAAATGCGCCCAACCT 59.629 52.632 4.18 0.00 0.00 3.50
5122 5607 2.324330 GCCAAAAATGCGCCCAACC 61.324 57.895 4.18 0.00 0.00 3.77
5123 5608 1.291184 GAGCCAAAAATGCGCCCAAC 61.291 55.000 4.18 0.00 0.00 3.77
5124 5609 1.005156 GAGCCAAAAATGCGCCCAA 60.005 52.632 4.18 0.00 0.00 4.12
5125 5610 1.470996 AAGAGCCAAAAATGCGCCCA 61.471 50.000 4.18 0.00 0.00 5.36
5126 5611 0.737367 GAAGAGCCAAAAATGCGCCC 60.737 55.000 4.18 0.00 0.00 6.13
5127 5612 0.244721 AGAAGAGCCAAAAATGCGCC 59.755 50.000 4.18 0.00 0.00 6.53
5128 5613 1.068333 TCAGAAGAGCCAAAAATGCGC 60.068 47.619 0.00 0.00 0.00 6.09
5129 5614 2.995466 TCAGAAGAGCCAAAAATGCG 57.005 45.000 0.00 0.00 0.00 4.73
5130 5615 3.256631 TCCTTCAGAAGAGCCAAAAATGC 59.743 43.478 12.14 0.00 0.00 3.56
5131 5616 5.458041 TTCCTTCAGAAGAGCCAAAAATG 57.542 39.130 12.14 0.00 0.00 2.32
5132 5617 7.575720 CGTTATTCCTTCAGAAGAGCCAAAAAT 60.576 37.037 12.14 3.02 38.07 1.82
5133 5618 6.293955 CGTTATTCCTTCAGAAGAGCCAAAAA 60.294 38.462 12.14 0.00 38.07 1.94
5134 5619 5.181245 CGTTATTCCTTCAGAAGAGCCAAAA 59.819 40.000 12.14 0.00 38.07 2.44
5135 5620 4.695455 CGTTATTCCTTCAGAAGAGCCAAA 59.305 41.667 12.14 0.00 38.07 3.28
5136 5621 4.253685 CGTTATTCCTTCAGAAGAGCCAA 58.746 43.478 12.14 0.00 38.07 4.52
5137 5622 3.260884 ACGTTATTCCTTCAGAAGAGCCA 59.739 43.478 12.14 0.00 38.07 4.75
5138 5623 3.863041 ACGTTATTCCTTCAGAAGAGCC 58.137 45.455 12.14 0.00 38.07 4.70
5139 5624 5.390991 CCAAACGTTATTCCTTCAGAAGAGC 60.391 44.000 12.14 0.00 38.07 4.09
5140 5625 5.701290 ACCAAACGTTATTCCTTCAGAAGAG 59.299 40.000 12.14 2.22 38.07 2.85
5141 5626 5.617252 ACCAAACGTTATTCCTTCAGAAGA 58.383 37.500 12.14 0.00 38.07 2.87
5142 5627 5.389516 CGACCAAACGTTATTCCTTCAGAAG 60.390 44.000 0.00 2.78 38.07 2.85
5143 5628 4.449743 CGACCAAACGTTATTCCTTCAGAA 59.550 41.667 0.00 0.00 39.32 3.02
5144 5629 3.991773 CGACCAAACGTTATTCCTTCAGA 59.008 43.478 0.00 0.00 0.00 3.27
5145 5630 3.991773 TCGACCAAACGTTATTCCTTCAG 59.008 43.478 0.00 0.00 34.70 3.02
5146 5631 3.992643 TCGACCAAACGTTATTCCTTCA 58.007 40.909 0.00 0.00 34.70 3.02
5147 5632 4.259690 CGATCGACCAAACGTTATTCCTTC 60.260 45.833 10.26 0.00 34.70 3.46
5148 5633 3.615496 CGATCGACCAAACGTTATTCCTT 59.385 43.478 10.26 0.00 34.70 3.36
5149 5634 3.184541 CGATCGACCAAACGTTATTCCT 58.815 45.455 10.26 0.00 34.70 3.36
5150 5635 2.283351 CCGATCGACCAAACGTTATTCC 59.717 50.000 18.66 0.00 34.70 3.01
5151 5636 2.925563 ACCGATCGACCAAACGTTATTC 59.074 45.455 18.66 0.00 34.70 1.75
5152 5637 2.963432 ACCGATCGACCAAACGTTATT 58.037 42.857 18.66 0.00 34.70 1.40
5153 5638 2.660189 ACCGATCGACCAAACGTTAT 57.340 45.000 18.66 0.00 34.70 1.89
5154 5639 2.731968 GCTACCGATCGACCAAACGTTA 60.732 50.000 18.66 0.00 34.70 3.18
5155 5640 1.986698 CTACCGATCGACCAAACGTT 58.013 50.000 18.66 0.00 34.70 3.99
5156 5641 0.457337 GCTACCGATCGACCAAACGT 60.457 55.000 18.66 6.42 34.70 3.99
5157 5642 0.179145 AGCTACCGATCGACCAAACG 60.179 55.000 18.66 0.00 0.00 3.60
5158 5643 2.005971 AAGCTACCGATCGACCAAAC 57.994 50.000 18.66 0.55 0.00 2.93
5159 5644 2.028839 TCAAAGCTACCGATCGACCAAA 60.029 45.455 18.66 0.00 0.00 3.28
5160 5645 1.546923 TCAAAGCTACCGATCGACCAA 59.453 47.619 18.66 0.00 0.00 3.67
5161 5646 1.179152 TCAAAGCTACCGATCGACCA 58.821 50.000 18.66 0.00 0.00 4.02
5162 5647 2.128035 CATCAAAGCTACCGATCGACC 58.872 52.381 18.66 1.34 0.00 4.79
5163 5648 1.523095 GCATCAAAGCTACCGATCGAC 59.477 52.381 18.66 2.87 0.00 4.20
5164 5649 1.136110 TGCATCAAAGCTACCGATCGA 59.864 47.619 18.66 0.00 34.99 3.59
5165 5650 1.570813 TGCATCAAAGCTACCGATCG 58.429 50.000 8.51 8.51 34.99 3.69
5166 5651 3.325230 GTTGCATCAAAGCTACCGATC 57.675 47.619 0.00 0.00 34.82 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.