Multiple sequence alignment - TraesCS2A01G099900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G099900 chr2A 100.000 4121 0 0 1 4121 52667156 52663036 0.000000e+00 7611.0
1 TraesCS2A01G099900 chr2D 90.345 3853 206 80 273 4058 51193938 51190185 0.000000e+00 4902.0
2 TraesCS2A01G099900 chr2D 93.182 44 3 0 4078 4121 51190190 51190147 9.560000e-07 65.8
3 TraesCS2A01G099900 chr2B 88.813 3933 224 89 269 4121 80123382 80119586 0.000000e+00 4626.0
4 TraesCS2A01G099900 chr4B 81.652 932 139 25 1277 2195 384292788 384291876 0.000000e+00 745.0
5 TraesCS2A01G099900 chr4A 83.293 826 116 18 1278 2098 168792300 168793108 0.000000e+00 741.0
6 TraesCS2A01G099900 chr4D 81.330 932 142 25 1277 2195 308371491 308370579 0.000000e+00 728.0
7 TraesCS2A01G099900 chr5D 92.857 42 3 0 94 135 379545373 379545332 1.240000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G099900 chr2A 52663036 52667156 4120 True 7611.0 7611 100.0000 1 4121 1 chr2A.!!$R1 4120
1 TraesCS2A01G099900 chr2D 51190147 51193938 3791 True 2483.9 4902 91.7635 273 4121 2 chr2D.!!$R1 3848
2 TraesCS2A01G099900 chr2B 80119586 80123382 3796 True 4626.0 4626 88.8130 269 4121 1 chr2B.!!$R1 3852
3 TraesCS2A01G099900 chr4B 384291876 384292788 912 True 745.0 745 81.6520 1277 2195 1 chr4B.!!$R1 918
4 TraesCS2A01G099900 chr4A 168792300 168793108 808 False 741.0 741 83.2930 1278 2098 1 chr4A.!!$F1 820
5 TraesCS2A01G099900 chr4D 308370579 308371491 912 True 728.0 728 81.3300 1277 2195 1 chr4D.!!$R1 918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.034337 TTTAGTGGGTCTGCGGTGTC 59.966 55.0 0.00 0.0 0.00 3.67 F
169 170 0.034477 CCCCTTCCCCACACACATAC 60.034 60.0 0.00 0.0 0.00 2.39 F
460 466 0.102300 GTGTGCAACTCAAACCCACC 59.898 55.0 0.00 0.0 38.04 4.61 F
774 801 0.108138 ATCTCACTTTTCGCCTCCCG 60.108 55.0 0.00 0.0 38.61 5.14 F
865 905 0.319469 GTTCGGCCATTTGTGGGTTG 60.319 55.0 2.24 0.0 0.00 3.77 F
866 906 0.757188 TTCGGCCATTTGTGGGTTGT 60.757 50.0 2.24 0.0 0.00 3.32 F
1294 1368 0.996762 AGGAGGAGGAGGAGGACGAT 60.997 60.0 0.00 0.0 0.00 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1039 1092 1.000896 AATCAAGCAACCCCTCCCG 60.001 57.895 0.00 0.0 0.00 5.14 R
1120 1176 1.500396 CATGCGCCGATCCATCATG 59.500 57.895 4.18 0.0 0.00 3.07 R
2407 2505 1.495584 GCACGTTCTCGCAGGTGAAA 61.496 55.000 0.00 0.0 41.18 2.69 R
2492 2590 1.971695 GGTGGTTGTACCTGCAGGC 60.972 63.158 33.06 17.9 39.58 4.85 R
2685 2783 3.767230 CGTCGTTGACTGCGCCTG 61.767 66.667 4.18 0.0 0.00 4.85 R
2865 2972 2.995574 ACAGGTCGAACCCCGGAG 60.996 66.667 0.73 0.0 39.75 4.63 R
3229 3340 0.241213 CACGAGCGAGGAGAAGAACA 59.759 55.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.367512 GCAGGGGAGGTGGAGGAT 60.368 66.667 0.00 0.00 0.00 3.24
18 19 2.750657 GCAGGGGAGGTGGAGGATG 61.751 68.421 0.00 0.00 0.00 3.51
19 20 2.367512 AGGGGAGGTGGAGGATGC 60.368 66.667 0.00 0.00 0.00 3.91
20 21 3.866582 GGGGAGGTGGAGGATGCG 61.867 72.222 0.00 0.00 0.00 4.73
21 22 3.866582 GGGAGGTGGAGGATGCGG 61.867 72.222 0.00 0.00 0.00 5.69
22 23 2.764128 GGAGGTGGAGGATGCGGA 60.764 66.667 0.00 0.00 0.00 5.54
23 24 2.143419 GGAGGTGGAGGATGCGGAT 61.143 63.158 0.00 0.00 0.00 4.18
24 25 1.700042 GGAGGTGGAGGATGCGGATT 61.700 60.000 0.00 0.00 0.00 3.01
25 26 0.250081 GAGGTGGAGGATGCGGATTC 60.250 60.000 0.00 0.00 0.00 2.52
26 27 0.982852 AGGTGGAGGATGCGGATTCA 60.983 55.000 0.00 0.00 0.00 2.57
27 28 0.107214 GGTGGAGGATGCGGATTCAA 60.107 55.000 0.00 0.00 0.00 2.69
28 29 1.681780 GGTGGAGGATGCGGATTCAAA 60.682 52.381 0.00 0.00 0.00 2.69
29 30 1.672881 GTGGAGGATGCGGATTCAAAG 59.327 52.381 0.00 0.00 0.00 2.77
30 31 1.281867 TGGAGGATGCGGATTCAAAGT 59.718 47.619 0.00 0.00 0.00 2.66
31 32 2.503765 TGGAGGATGCGGATTCAAAGTA 59.496 45.455 0.00 0.00 0.00 2.24
32 33 3.054728 TGGAGGATGCGGATTCAAAGTAA 60.055 43.478 0.00 0.00 0.00 2.24
33 34 3.561725 GGAGGATGCGGATTCAAAGTAAG 59.438 47.826 0.00 0.00 0.00 2.34
34 35 3.545703 AGGATGCGGATTCAAAGTAAGG 58.454 45.455 0.00 0.00 0.00 2.69
35 36 2.618709 GGATGCGGATTCAAAGTAAGGG 59.381 50.000 0.00 0.00 0.00 3.95
36 37 2.122783 TGCGGATTCAAAGTAAGGGG 57.877 50.000 0.00 0.00 0.00 4.79
37 38 1.340600 TGCGGATTCAAAGTAAGGGGG 60.341 52.381 0.00 0.00 0.00 5.40
38 39 1.064979 GCGGATTCAAAGTAAGGGGGA 60.065 52.381 0.00 0.00 0.00 4.81
39 40 2.919228 CGGATTCAAAGTAAGGGGGAG 58.081 52.381 0.00 0.00 0.00 4.30
40 41 2.504175 CGGATTCAAAGTAAGGGGGAGA 59.496 50.000 0.00 0.00 0.00 3.71
41 42 3.054655 CGGATTCAAAGTAAGGGGGAGAA 60.055 47.826 0.00 0.00 0.00 2.87
42 43 4.527944 GGATTCAAAGTAAGGGGGAGAAG 58.472 47.826 0.00 0.00 0.00 2.85
43 44 4.018324 GGATTCAAAGTAAGGGGGAGAAGT 60.018 45.833 0.00 0.00 0.00 3.01
44 45 5.191124 GGATTCAAAGTAAGGGGGAGAAGTA 59.809 44.000 0.00 0.00 0.00 2.24
45 46 6.296836 GGATTCAAAGTAAGGGGGAGAAGTAA 60.297 42.308 0.00 0.00 0.00 2.24
46 47 5.494390 TCAAAGTAAGGGGGAGAAGTAAC 57.506 43.478 0.00 0.00 0.00 2.50
47 48 4.909088 TCAAAGTAAGGGGGAGAAGTAACA 59.091 41.667 0.00 0.00 0.00 2.41
48 49 5.370289 TCAAAGTAAGGGGGAGAAGTAACAA 59.630 40.000 0.00 0.00 0.00 2.83
49 50 5.917545 AAGTAAGGGGGAGAAGTAACAAA 57.082 39.130 0.00 0.00 0.00 2.83
50 51 5.917545 AGTAAGGGGGAGAAGTAACAAAA 57.082 39.130 0.00 0.00 0.00 2.44
51 52 6.464530 AGTAAGGGGGAGAAGTAACAAAAT 57.535 37.500 0.00 0.00 0.00 1.82
52 53 6.246163 AGTAAGGGGGAGAAGTAACAAAATG 58.754 40.000 0.00 0.00 0.00 2.32
53 54 4.047627 AGGGGGAGAAGTAACAAAATGG 57.952 45.455 0.00 0.00 0.00 3.16
54 55 3.660669 AGGGGGAGAAGTAACAAAATGGA 59.339 43.478 0.00 0.00 0.00 3.41
55 56 4.107311 AGGGGGAGAAGTAACAAAATGGAA 59.893 41.667 0.00 0.00 0.00 3.53
56 57 4.836175 GGGGGAGAAGTAACAAAATGGAAA 59.164 41.667 0.00 0.00 0.00 3.13
57 58 5.305902 GGGGGAGAAGTAACAAAATGGAAAA 59.694 40.000 0.00 0.00 0.00 2.29
58 59 6.183361 GGGGGAGAAGTAACAAAATGGAAAAA 60.183 38.462 0.00 0.00 0.00 1.94
75 76 1.931635 AAAAGAGAGGCCGAGAGAGT 58.068 50.000 0.00 0.00 0.00 3.24
76 77 1.181786 AAAGAGAGGCCGAGAGAGTG 58.818 55.000 0.00 0.00 0.00 3.51
77 78 0.039035 AAGAGAGGCCGAGAGAGTGT 59.961 55.000 0.00 0.00 0.00 3.55
78 79 0.913205 AGAGAGGCCGAGAGAGTGTA 59.087 55.000 0.00 0.00 0.00 2.90
79 80 1.493022 AGAGAGGCCGAGAGAGTGTAT 59.507 52.381 0.00 0.00 0.00 2.29
80 81 2.092103 AGAGAGGCCGAGAGAGTGTATT 60.092 50.000 0.00 0.00 0.00 1.89
81 82 2.691011 GAGAGGCCGAGAGAGTGTATTT 59.309 50.000 0.00 0.00 0.00 1.40
82 83 3.884091 GAGAGGCCGAGAGAGTGTATTTA 59.116 47.826 0.00 0.00 0.00 1.40
83 84 3.886505 AGAGGCCGAGAGAGTGTATTTAG 59.113 47.826 0.00 0.00 0.00 1.85
84 85 3.633065 GAGGCCGAGAGAGTGTATTTAGT 59.367 47.826 0.00 0.00 0.00 2.24
85 86 3.381908 AGGCCGAGAGAGTGTATTTAGTG 59.618 47.826 0.00 0.00 0.00 2.74
86 87 3.491104 GGCCGAGAGAGTGTATTTAGTGG 60.491 52.174 0.00 0.00 0.00 4.00
87 88 3.491104 GCCGAGAGAGTGTATTTAGTGGG 60.491 52.174 0.00 0.00 0.00 4.61
88 89 3.700038 CCGAGAGAGTGTATTTAGTGGGT 59.300 47.826 0.00 0.00 0.00 4.51
89 90 4.202030 CCGAGAGAGTGTATTTAGTGGGTC 60.202 50.000 0.00 0.00 0.00 4.46
90 91 4.641094 CGAGAGAGTGTATTTAGTGGGTCT 59.359 45.833 0.00 0.00 0.00 3.85
91 92 5.449314 CGAGAGAGTGTATTTAGTGGGTCTG 60.449 48.000 0.00 0.00 0.00 3.51
92 93 4.160626 AGAGAGTGTATTTAGTGGGTCTGC 59.839 45.833 0.00 0.00 0.00 4.26
93 94 3.119101 AGAGTGTATTTAGTGGGTCTGCG 60.119 47.826 0.00 0.00 0.00 5.18
94 95 2.093658 AGTGTATTTAGTGGGTCTGCGG 60.094 50.000 0.00 0.00 0.00 5.69
95 96 1.903860 TGTATTTAGTGGGTCTGCGGT 59.096 47.619 0.00 0.00 0.00 5.68
96 97 2.277084 GTATTTAGTGGGTCTGCGGTG 58.723 52.381 0.00 0.00 0.00 4.94
97 98 0.690762 ATTTAGTGGGTCTGCGGTGT 59.309 50.000 0.00 0.00 0.00 4.16
98 99 0.034337 TTTAGTGGGTCTGCGGTGTC 59.966 55.000 0.00 0.00 0.00 3.67
99 100 2.149803 TTAGTGGGTCTGCGGTGTCG 62.150 60.000 0.00 0.00 39.81 4.35
107 108 3.228017 TGCGGTGTCGGAGTCCAA 61.228 61.111 10.49 0.00 36.79 3.53
108 109 2.737376 GCGGTGTCGGAGTCCAAC 60.737 66.667 10.49 0.45 36.79 3.77
109 110 2.430244 CGGTGTCGGAGTCCAACG 60.430 66.667 10.49 0.00 34.98 4.10
110 111 2.732658 GGTGTCGGAGTCCAACGT 59.267 61.111 10.49 0.00 0.00 3.99
111 112 1.663702 GGTGTCGGAGTCCAACGTG 60.664 63.158 10.49 0.00 0.00 4.49
112 113 1.663702 GTGTCGGAGTCCAACGTGG 60.664 63.158 10.49 0.00 39.43 4.94
113 114 2.737376 GTCGGAGTCCAACGTGGC 60.737 66.667 10.49 0.00 37.47 5.01
114 115 2.915659 TCGGAGTCCAACGTGGCT 60.916 61.111 10.49 0.00 37.47 4.75
115 116 2.738521 CGGAGTCCAACGTGGCTG 60.739 66.667 10.49 0.00 37.47 4.85
116 117 2.741092 GGAGTCCAACGTGGCTGA 59.259 61.111 3.60 0.00 37.47 4.26
117 118 1.296715 GGAGTCCAACGTGGCTGAT 59.703 57.895 3.60 0.00 37.47 2.90
118 119 1.021390 GGAGTCCAACGTGGCTGATG 61.021 60.000 3.60 0.00 37.47 3.07
119 120 0.320771 GAGTCCAACGTGGCTGATGT 60.321 55.000 0.00 0.00 37.47 3.06
120 121 0.320771 AGTCCAACGTGGCTGATGTC 60.321 55.000 0.00 0.00 37.47 3.06
121 122 1.003839 TCCAACGTGGCTGATGTCC 60.004 57.895 0.00 0.00 37.47 4.02
122 123 2.390599 CCAACGTGGCTGATGTCCG 61.391 63.158 0.00 0.00 0.00 4.79
123 124 2.047274 AACGTGGCTGATGTCCGG 60.047 61.111 0.00 0.00 0.00 5.14
124 125 2.579657 AACGTGGCTGATGTCCGGA 61.580 57.895 0.00 0.00 0.00 5.14
125 126 2.509336 CGTGGCTGATGTCCGGAC 60.509 66.667 28.17 28.17 0.00 4.79
126 127 2.982130 GTGGCTGATGTCCGGACT 59.018 61.111 33.39 19.82 0.00 3.85
127 128 1.153549 GTGGCTGATGTCCGGACTC 60.154 63.158 33.39 26.11 0.00 3.36
128 129 2.359169 TGGCTGATGTCCGGACTCC 61.359 63.158 33.39 24.12 0.00 3.85
129 130 2.501610 GCTGATGTCCGGACTCCC 59.498 66.667 33.39 21.81 0.00 4.30
139 140 2.430367 GGACTCCCGCAAACACCT 59.570 61.111 0.00 0.00 0.00 4.00
140 141 1.966451 GGACTCCCGCAAACACCTG 60.966 63.158 0.00 0.00 0.00 4.00
141 142 1.070786 GACTCCCGCAAACACCTGA 59.929 57.895 0.00 0.00 0.00 3.86
142 143 1.227853 ACTCCCGCAAACACCTGAC 60.228 57.895 0.00 0.00 0.00 3.51
143 144 1.966451 CTCCCGCAAACACCTGACC 60.966 63.158 0.00 0.00 0.00 4.02
144 145 2.983592 CCCGCAAACACCTGACCC 60.984 66.667 0.00 0.00 0.00 4.46
145 146 2.983592 CCGCAAACACCTGACCCC 60.984 66.667 0.00 0.00 0.00 4.95
146 147 2.983592 CGCAAACACCTGACCCCC 60.984 66.667 0.00 0.00 0.00 5.40
147 148 2.520968 GCAAACACCTGACCCCCT 59.479 61.111 0.00 0.00 0.00 4.79
148 149 1.603739 GCAAACACCTGACCCCCTC 60.604 63.158 0.00 0.00 0.00 4.30
149 150 1.074951 CAAACACCTGACCCCCTCC 59.925 63.158 0.00 0.00 0.00 4.30
150 151 2.160853 AAACACCTGACCCCCTCCC 61.161 63.158 0.00 0.00 0.00 4.30
151 152 4.677151 ACACCTGACCCCCTCCCC 62.677 72.222 0.00 0.00 0.00 4.81
166 167 3.182263 CCCCCTTCCCCACACACA 61.182 66.667 0.00 0.00 0.00 3.72
167 168 2.547595 CCCCCTTCCCCACACACAT 61.548 63.158 0.00 0.00 0.00 3.21
168 169 1.211567 CCCCCTTCCCCACACACATA 61.212 60.000 0.00 0.00 0.00 2.29
169 170 0.034477 CCCCTTCCCCACACACATAC 60.034 60.000 0.00 0.00 0.00 2.39
170 171 0.991920 CCCTTCCCCACACACATACT 59.008 55.000 0.00 0.00 0.00 2.12
171 172 1.354368 CCCTTCCCCACACACATACTT 59.646 52.381 0.00 0.00 0.00 2.24
172 173 2.225017 CCCTTCCCCACACACATACTTT 60.225 50.000 0.00 0.00 0.00 2.66
173 174 2.819608 CCTTCCCCACACACATACTTTG 59.180 50.000 0.00 0.00 0.00 2.77
174 175 3.486383 CTTCCCCACACACATACTTTGT 58.514 45.455 0.00 0.00 39.91 2.83
175 176 3.134574 TCCCCACACACATACTTTGTC 57.865 47.619 0.00 0.00 36.00 3.18
176 177 2.708861 TCCCCACACACATACTTTGTCT 59.291 45.455 0.00 0.00 36.00 3.41
177 178 3.137544 TCCCCACACACATACTTTGTCTT 59.862 43.478 0.00 0.00 36.00 3.01
178 179 3.502211 CCCCACACACATACTTTGTCTTC 59.498 47.826 0.00 0.00 36.00 2.87
179 180 4.133820 CCCACACACATACTTTGTCTTCA 58.866 43.478 0.00 0.00 36.00 3.02
180 181 4.761739 CCCACACACATACTTTGTCTTCAT 59.238 41.667 0.00 0.00 36.00 2.57
181 182 5.241506 CCCACACACATACTTTGTCTTCATT 59.758 40.000 0.00 0.00 36.00 2.57
182 183 6.239008 CCCACACACATACTTTGTCTTCATTT 60.239 38.462 0.00 0.00 36.00 2.32
183 184 7.202526 CCACACACATACTTTGTCTTCATTTT 58.797 34.615 0.00 0.00 36.00 1.82
184 185 7.167968 CCACACACATACTTTGTCTTCATTTTG 59.832 37.037 0.00 0.00 36.00 2.44
185 186 6.697019 ACACACATACTTTGTCTTCATTTTGC 59.303 34.615 0.00 0.00 36.00 3.68
186 187 5.914635 ACACATACTTTGTCTTCATTTTGCG 59.085 36.000 0.00 0.00 36.00 4.85
187 188 5.343058 CACATACTTTGTCTTCATTTTGCGG 59.657 40.000 0.00 0.00 36.00 5.69
188 189 3.369546 ACTTTGTCTTCATTTTGCGGG 57.630 42.857 0.00 0.00 0.00 6.13
189 190 2.955660 ACTTTGTCTTCATTTTGCGGGA 59.044 40.909 0.00 0.00 0.00 5.14
190 191 3.004734 ACTTTGTCTTCATTTTGCGGGAG 59.995 43.478 0.00 0.00 0.00 4.30
191 192 2.559698 TGTCTTCATTTTGCGGGAGA 57.440 45.000 0.00 0.00 0.00 3.71
192 193 2.857483 TGTCTTCATTTTGCGGGAGAA 58.143 42.857 0.00 0.00 0.00 2.87
193 194 3.218453 TGTCTTCATTTTGCGGGAGAAA 58.782 40.909 0.00 0.00 0.00 2.52
194 195 3.826157 TGTCTTCATTTTGCGGGAGAAAT 59.174 39.130 0.00 0.00 0.00 2.17
195 196 4.280677 TGTCTTCATTTTGCGGGAGAAATT 59.719 37.500 0.00 0.00 0.00 1.82
196 197 4.622740 GTCTTCATTTTGCGGGAGAAATTG 59.377 41.667 0.00 0.00 0.00 2.32
197 198 2.958213 TCATTTTGCGGGAGAAATTGC 58.042 42.857 0.00 0.00 0.00 3.56
198 199 1.655099 CATTTTGCGGGAGAAATTGCG 59.345 47.619 0.00 0.00 0.00 4.85
199 200 0.671251 TTTTGCGGGAGAAATTGCGT 59.329 45.000 0.00 0.00 0.00 5.24
200 201 0.239879 TTTGCGGGAGAAATTGCGTC 59.760 50.000 0.00 0.00 0.00 5.19
201 202 0.605319 TTGCGGGAGAAATTGCGTCT 60.605 50.000 0.00 0.00 0.00 4.18
202 203 1.298157 TGCGGGAGAAATTGCGTCTG 61.298 55.000 0.00 0.00 0.00 3.51
203 204 1.982073 GCGGGAGAAATTGCGTCTGG 61.982 60.000 0.00 0.00 0.00 3.86
204 205 0.391130 CGGGAGAAATTGCGTCTGGA 60.391 55.000 0.00 0.00 0.00 3.86
205 206 1.087501 GGGAGAAATTGCGTCTGGAC 58.912 55.000 0.00 0.00 0.00 4.02
206 207 1.610624 GGGAGAAATTGCGTCTGGACA 60.611 52.381 1.63 0.00 0.00 4.02
207 208 1.734465 GGAGAAATTGCGTCTGGACAG 59.266 52.381 1.63 0.00 0.00 3.51
208 209 1.129437 GAGAAATTGCGTCTGGACAGC 59.871 52.381 1.63 6.18 0.00 4.40
209 210 0.169009 GAAATTGCGTCTGGACAGCC 59.831 55.000 12.22 0.00 32.64 4.85
210 211 1.577328 AAATTGCGTCTGGACAGCCG 61.577 55.000 0.00 0.00 36.79 5.52
211 212 2.449031 AATTGCGTCTGGACAGCCGA 62.449 55.000 6.96 0.00 36.79 5.54
212 213 2.842394 ATTGCGTCTGGACAGCCGAG 62.842 60.000 6.96 0.00 36.79 4.63
215 216 4.803426 GTCTGGACAGCCGAGCGG 62.803 72.222 4.20 4.20 36.79 5.52
217 218 4.803426 CTGGACAGCCGAGCGGAC 62.803 72.222 13.94 4.20 37.50 4.79
219 220 4.803426 GGACAGCCGAGCGGACAG 62.803 72.222 13.94 3.73 37.50 3.51
220 221 3.749064 GACAGCCGAGCGGACAGA 61.749 66.667 13.94 0.00 37.50 3.41
221 222 3.069980 GACAGCCGAGCGGACAGAT 62.070 63.158 13.94 0.00 37.50 2.90
222 223 1.725557 GACAGCCGAGCGGACAGATA 61.726 60.000 13.94 0.00 37.50 1.98
223 224 1.299468 CAGCCGAGCGGACAGATAC 60.299 63.158 13.94 0.00 37.50 2.24
224 225 1.753078 AGCCGAGCGGACAGATACA 60.753 57.895 13.94 0.00 37.50 2.29
225 226 1.141019 GCCGAGCGGACAGATACAA 59.859 57.895 13.94 0.00 37.50 2.41
226 227 1.146358 GCCGAGCGGACAGATACAAC 61.146 60.000 13.94 0.00 37.50 3.32
227 228 0.456221 CCGAGCGGACAGATACAACT 59.544 55.000 2.00 0.00 37.50 3.16
228 229 1.534175 CCGAGCGGACAGATACAACTC 60.534 57.143 2.00 0.00 37.50 3.01
229 230 1.828832 GAGCGGACAGATACAACTCG 58.171 55.000 0.00 0.00 0.00 4.18
230 231 1.132643 GAGCGGACAGATACAACTCGT 59.867 52.381 0.00 0.00 0.00 4.18
231 232 1.135373 AGCGGACAGATACAACTCGTG 60.135 52.381 0.00 0.00 0.00 4.35
232 233 1.402456 GCGGACAGATACAACTCGTGT 60.402 52.381 0.00 0.00 44.82 4.49
233 234 2.925306 GCGGACAGATACAACTCGTGTT 60.925 50.000 0.00 0.00 41.98 3.32
242 243 3.725754 AACTCGTGTTGGATGGCTT 57.274 47.368 1.37 0.00 34.71 4.35
243 244 1.523758 AACTCGTGTTGGATGGCTTC 58.476 50.000 1.37 0.00 34.71 3.86
244 245 0.321653 ACTCGTGTTGGATGGCTTCC 60.322 55.000 12.30 12.30 45.69 3.46
253 254 2.457366 GGATGGCTTCCGTATAGGTG 57.543 55.000 3.39 0.00 41.99 4.00
254 255 1.608283 GGATGGCTTCCGTATAGGTGC 60.608 57.143 3.39 0.00 41.99 5.01
255 256 4.773209 GGCTTCCGTATAGGTGCC 57.227 61.111 7.77 7.77 46.51 5.01
258 259 2.435533 GCTTCCGTATAGGTGCCTAC 57.564 55.000 0.00 0.00 41.99 3.18
259 260 1.335689 GCTTCCGTATAGGTGCCTACG 60.336 57.143 0.00 3.51 41.99 3.51
260 261 0.670162 TTCCGTATAGGTGCCTACGC 59.330 55.000 7.76 0.89 39.42 4.42
261 262 1.081641 CCGTATAGGTGCCTACGCG 60.082 63.158 3.53 3.53 39.42 6.01
262 263 1.081641 CGTATAGGTGCCTACGCGG 60.082 63.158 12.47 0.00 38.08 6.46
263 264 1.288127 GTATAGGTGCCTACGCGGG 59.712 63.158 12.47 3.52 38.08 6.13
300 301 5.959618 ACTTTCTTAGTGTTATGGTTGCC 57.040 39.130 0.00 0.00 35.19 4.52
303 306 6.549736 ACTTTCTTAGTGTTATGGTTGCCTTT 59.450 34.615 0.00 0.00 35.19 3.11
327 330 0.390209 TAGGCCGCAACGAGTTTACC 60.390 55.000 0.00 0.00 0.00 2.85
328 331 1.962306 GGCCGCAACGAGTTTACCA 60.962 57.895 0.00 0.00 0.00 3.25
344 347 6.486657 GTTTACCAAAACGCTGTAAACTTC 57.513 37.500 14.11 0.00 45.36 3.01
401 407 0.663153 AAAAAGGAGCACACTCACGC 59.337 50.000 0.00 0.00 45.42 5.34
402 408 1.166531 AAAAGGAGCACACTCACGCC 61.167 55.000 0.00 0.00 45.42 5.68
403 409 2.324014 AAAGGAGCACACTCACGCCA 62.324 55.000 0.00 0.00 45.42 5.69
419 425 2.747460 CACCATCACCAGGCACGG 60.747 66.667 0.00 0.00 0.00 4.94
421 427 2.124983 CCATCACCAGGCACGGAG 60.125 66.667 0.00 0.00 0.00 4.63
450 456 1.148273 ATCCACCACGTGTGCAACT 59.852 52.632 15.65 0.00 44.01 3.16
452 458 1.817520 CCACCACGTGTGCAACTCA 60.818 57.895 15.65 0.00 44.01 3.41
453 459 1.372838 CCACCACGTGTGCAACTCAA 61.373 55.000 15.65 0.00 44.01 3.02
457 463 0.248458 CACGTGTGCAACTCAAACCC 60.248 55.000 7.58 0.00 38.04 4.11
458 464 0.678366 ACGTGTGCAACTCAAACCCA 60.678 50.000 0.00 0.00 38.04 4.51
459 465 0.248458 CGTGTGCAACTCAAACCCAC 60.248 55.000 0.00 0.00 38.04 4.61
460 466 0.102300 GTGTGCAACTCAAACCCACC 59.898 55.000 0.00 0.00 38.04 4.61
461 467 0.323816 TGTGCAACTCAAACCCACCA 60.324 50.000 0.00 0.00 38.04 4.17
468 474 1.073923 ACTCAAACCCACCATGGAGAC 59.926 52.381 21.47 0.00 40.96 3.36
476 482 3.164269 CCATGGAGACGGGGGAGG 61.164 72.222 5.56 0.00 0.00 4.30
496 502 3.480133 GGAGACCCGGGTGGATGG 61.480 72.222 36.01 0.00 37.49 3.51
497 503 4.176752 GAGACCCGGGTGGATGGC 62.177 72.222 36.01 16.26 37.49 4.40
498 504 4.741239 AGACCCGGGTGGATGGCT 62.741 66.667 36.01 18.66 37.49 4.75
499 505 4.176752 GACCCGGGTGGATGGCTC 62.177 72.222 36.01 10.44 37.49 4.70
502 508 4.530857 CCGGGTGGATGGCTCGAC 62.531 72.222 0.00 0.00 37.49 4.20
503 509 4.530857 CGGGTGGATGGCTCGACC 62.531 72.222 8.79 8.79 46.51 4.79
505 511 3.458163 GGTGGATGGCTCGACCGA 61.458 66.667 3.29 0.00 39.99 4.69
506 512 2.797278 GGTGGATGGCTCGACCGAT 61.797 63.158 0.00 0.00 39.99 4.18
507 513 1.592669 GTGGATGGCTCGACCGATG 60.593 63.158 0.00 0.00 43.94 3.84
508 514 2.029666 GGATGGCTCGACCGATGG 59.970 66.667 0.00 0.00 43.94 3.51
509 515 2.498941 GGATGGCTCGACCGATGGA 61.499 63.158 0.00 0.00 43.94 3.41
510 516 1.441729 GATGGCTCGACCGATGGAA 59.558 57.895 0.00 0.00 43.94 3.53
511 517 0.876342 GATGGCTCGACCGATGGAAC 60.876 60.000 0.00 0.00 43.94 3.62
557 567 2.412089 CGTCGGTCAAAAAGATCCAGAC 59.588 50.000 0.00 0.00 0.00 3.51
599 609 2.815647 CCACTCGCCGCTCTTTCC 60.816 66.667 0.00 0.00 0.00 3.13
600 610 2.815647 CACTCGCCGCTCTTTCCC 60.816 66.667 0.00 0.00 0.00 3.97
601 611 4.083862 ACTCGCCGCTCTTTCCCC 62.084 66.667 0.00 0.00 0.00 4.81
602 612 4.082523 CTCGCCGCTCTTTCCCCA 62.083 66.667 0.00 0.00 0.00 4.96
603 613 3.391665 CTCGCCGCTCTTTCCCCAT 62.392 63.158 0.00 0.00 0.00 4.00
604 614 3.204827 CGCCGCTCTTTCCCCATG 61.205 66.667 0.00 0.00 0.00 3.66
633 647 1.365999 GTTTCCGCCCCCAACAAAG 59.634 57.895 0.00 0.00 0.00 2.77
639 653 3.039134 CCCCCAACAAAGCGTGTC 58.961 61.111 0.00 0.00 40.60 3.67
651 665 3.827898 CGTGTCCCTCCTCGCCTC 61.828 72.222 0.00 0.00 0.00 4.70
652 666 3.462678 GTGTCCCTCCTCGCCTCC 61.463 72.222 0.00 0.00 0.00 4.30
653 667 3.673597 TGTCCCTCCTCGCCTCCT 61.674 66.667 0.00 0.00 0.00 3.69
654 668 2.364448 GTCCCTCCTCGCCTCCTT 60.364 66.667 0.00 0.00 0.00 3.36
655 669 2.042843 TCCCTCCTCGCCTCCTTC 60.043 66.667 0.00 0.00 0.00 3.46
656 670 3.157949 CCCTCCTCGCCTCCTTCC 61.158 72.222 0.00 0.00 0.00 3.46
657 671 2.042435 CCTCCTCGCCTCCTTCCT 60.042 66.667 0.00 0.00 0.00 3.36
658 672 2.131067 CCTCCTCGCCTCCTTCCTC 61.131 68.421 0.00 0.00 0.00 3.71
659 673 2.042843 TCCTCGCCTCCTTCCTCC 60.043 66.667 0.00 0.00 0.00 4.30
660 674 2.042435 CCTCGCCTCCTTCCTCCT 60.042 66.667 0.00 0.00 0.00 3.69
670 691 1.199615 CCTTCCTCCTTCCTCCTCAC 58.800 60.000 0.00 0.00 0.00 3.51
757 784 4.220572 GCTGTAAAGAGGTACGATCGATC 58.779 47.826 24.34 15.68 0.00 3.69
774 801 0.108138 ATCTCACTTTTCGCCTCCCG 60.108 55.000 0.00 0.00 38.61 5.14
783 823 4.891727 CGCCTCCCGATCCAACCG 62.892 72.222 0.00 0.00 40.02 4.44
794 834 1.749334 ATCCAACCGAGATCCCGCTC 61.749 60.000 0.00 0.00 0.00 5.03
812 852 1.441016 CGCTTCACTTTTCGGCTGC 60.441 57.895 0.00 0.00 0.00 5.25
849 889 1.437986 CCTCCCGATCCGTCAGTTC 59.562 63.158 0.00 0.00 0.00 3.01
862 902 0.893270 TCAGTTCGGCCATTTGTGGG 60.893 55.000 2.24 0.00 0.00 4.61
863 903 1.152830 AGTTCGGCCATTTGTGGGT 59.847 52.632 2.24 0.00 0.00 4.51
864 904 0.469144 AGTTCGGCCATTTGTGGGTT 60.469 50.000 2.24 0.00 0.00 4.11
865 905 0.319469 GTTCGGCCATTTGTGGGTTG 60.319 55.000 2.24 0.00 0.00 3.77
866 906 0.757188 TTCGGCCATTTGTGGGTTGT 60.757 50.000 2.24 0.00 0.00 3.32
867 907 1.006337 CGGCCATTTGTGGGTTGTG 60.006 57.895 2.24 0.00 0.00 3.33
868 908 1.370810 GGCCATTTGTGGGTTGTGG 59.629 57.895 0.00 0.00 0.00 4.17
967 1020 1.670811 AGTCCGTGCTCACTTTTGTTG 59.329 47.619 0.00 0.00 0.00 3.33
971 1024 1.847999 CGTGCTCACTTTTGTTGCTTG 59.152 47.619 0.00 0.00 32.72 4.01
1012 1065 3.555168 GCGCAGGTGGCTATATAGACTTT 60.555 47.826 16.65 0.00 41.67 2.66
1282 1356 1.528309 GGAGGAGAGCGAGGAGGAG 60.528 68.421 0.00 0.00 0.00 3.69
1285 1359 1.528309 GGAGAGCGAGGAGGAGGAG 60.528 68.421 0.00 0.00 0.00 3.69
1294 1368 0.996762 AGGAGGAGGAGGAGGACGAT 60.997 60.000 0.00 0.00 0.00 3.73
1702 1779 3.854669 CTCTGCGGCGGGGAAGAT 61.855 66.667 9.78 0.00 0.00 2.40
2065 2142 2.105128 GCCAGGGAGATCGTCACG 59.895 66.667 0.00 0.00 31.54 4.35
2507 2605 1.017701 GTACGCCTGCAGGTACAACC 61.018 60.000 32.81 14.72 39.01 3.77
2557 2655 4.814294 CCGTCGGCCTTCTTCCCG 62.814 72.222 0.00 0.00 45.64 5.14
2864 2971 4.785453 CGGAGCTGGGCAGGTTCC 62.785 72.222 0.00 2.66 39.57 3.62
2865 2972 4.432741 GGAGCTGGGCAGGTTCCC 62.433 72.222 0.00 0.00 46.73 3.97
2866 2973 3.334054 GAGCTGGGCAGGTTCCCT 61.334 66.667 0.00 0.00 46.67 4.20
2938 3045 2.949106 CAGCAGAAGCACGTTGGG 59.051 61.111 0.00 0.00 45.49 4.12
3066 3174 2.673368 CGTCTTGCAACTGTAAGGATCC 59.327 50.000 2.48 2.48 39.30 3.36
3131 3239 4.749245 ATCACACCGAAATCAAACTGTC 57.251 40.909 0.00 0.00 0.00 3.51
3132 3240 2.875933 TCACACCGAAATCAAACTGTCC 59.124 45.455 0.00 0.00 0.00 4.02
3227 3338 3.057386 ACCAAAACACCGACGAACTTTTT 60.057 39.130 0.00 0.00 0.00 1.94
3229 3340 4.408694 CAAAACACCGACGAACTTTTTCT 58.591 39.130 0.00 0.00 0.00 2.52
3277 3388 5.406649 CGACTTTTGCTGATCTAGAAGACT 58.593 41.667 0.00 0.00 0.00 3.24
3308 3419 2.649129 GCCCTTTCATGGCCACCAC 61.649 63.158 8.16 0.00 43.33 4.16
3323 3434 3.148340 CCACGGGGTAGCTTTACAC 57.852 57.895 0.00 0.00 0.00 2.90
3326 3437 0.037975 ACGGGGTAGCTTTACACACG 60.038 55.000 0.00 0.00 0.00 4.49
3328 3439 0.320946 GGGGTAGCTTTACACACGCA 60.321 55.000 0.00 0.00 0.00 5.24
3330 3441 0.794473 GGTAGCTTTACACACGCACC 59.206 55.000 0.00 0.00 0.00 5.01
3342 3453 2.269241 CGCACCCTCTCCCTTTCC 59.731 66.667 0.00 0.00 0.00 3.13
3357 3468 1.019278 TTTCCGCTCCGCTGTTCATC 61.019 55.000 0.00 0.00 0.00 2.92
3363 3474 1.493950 CTCCGCTGTTCATCGATGGC 61.494 60.000 24.61 18.07 0.00 4.40
3369 3480 2.889988 TTCATCGATGGCGTGCGG 60.890 61.111 24.61 0.00 38.98 5.69
3450 3566 1.790387 GCCATGACAGCGACTTGTC 59.210 57.895 0.00 7.84 46.02 3.18
3540 3657 0.390860 AGACGCTGCTGACTTTGACT 59.609 50.000 0.00 0.00 0.00 3.41
3541 3658 0.510359 GACGCTGCTGACTTTGACTG 59.490 55.000 0.00 0.00 0.00 3.51
3542 3659 0.104855 ACGCTGCTGACTTTGACTGA 59.895 50.000 0.00 0.00 0.00 3.41
3543 3660 0.510359 CGCTGCTGACTTTGACTGAC 59.490 55.000 0.00 0.00 0.00 3.51
3575 3701 1.610624 GGCGAAGGATGGTTTCTGTGA 60.611 52.381 0.00 0.00 0.00 3.58
3581 3707 5.182001 CGAAGGATGGTTTCTGTGAAATTCT 59.818 40.000 0.00 0.00 0.00 2.40
3600 3726 3.873910 TCTCGGGGATTTCAGTTGAATC 58.126 45.455 0.00 0.00 33.54 2.52
3639 3780 8.037382 TGCAGAAATCTGAGAATTTTACTGAG 57.963 34.615 14.43 0.00 46.59 3.35
3640 3781 7.663081 TGCAGAAATCTGAGAATTTTACTGAGT 59.337 33.333 14.43 0.00 46.59 3.41
3662 3818 3.651206 TCGTACAGGCAAACATAAACGA 58.349 40.909 0.00 0.00 35.94 3.85
3666 3822 4.223320 ACAGGCAAACATAAACGAACAG 57.777 40.909 0.00 0.00 0.00 3.16
3692 3848 4.721274 TCAGATTCAGGGACCATCATGTAA 59.279 41.667 0.00 0.00 0.00 2.41
3717 3873 1.017387 GATGCCTCCGTGGACATTTC 58.983 55.000 0.00 0.00 38.35 2.17
3735 3891 5.106555 ACATTTCATGAGTGGTTTCTAAGCG 60.107 40.000 12.92 0.00 0.00 4.68
3738 3894 3.994392 TCATGAGTGGTTTCTAAGCGAAC 59.006 43.478 0.00 0.00 0.00 3.95
3812 3968 0.959553 TCGAGATCCACCTAATCCGC 59.040 55.000 0.00 0.00 0.00 5.54
3814 3970 0.321996 GAGATCCACCTAATCCGCCC 59.678 60.000 0.00 0.00 0.00 6.13
3815 3971 1.128188 AGATCCACCTAATCCGCCCC 61.128 60.000 0.00 0.00 0.00 5.80
3816 3972 1.073706 ATCCACCTAATCCGCCCCT 60.074 57.895 0.00 0.00 0.00 4.79
3817 3973 0.697854 ATCCACCTAATCCGCCCCTT 60.698 55.000 0.00 0.00 0.00 3.95
3818 3974 0.030909 TCCACCTAATCCGCCCCTTA 60.031 55.000 0.00 0.00 0.00 2.69
3848 4005 0.034089 AAGCACCCCTGATTAGCACC 60.034 55.000 0.00 0.00 0.00 5.01
3895 4056 3.004629 TGAAACACATGCCATCAGTTGTC 59.995 43.478 0.00 0.00 0.00 3.18
3934 4095 7.612677 AGTAGTACCAGACTAAACAAATCAGG 58.387 38.462 0.00 0.00 42.43 3.86
3979 4140 1.291877 CGACGTGCAAAAGGGAGGAG 61.292 60.000 0.00 0.00 0.00 3.69
3985 4146 1.271926 TGCAAAAGGGAGGAGCTAACC 60.272 52.381 0.00 0.00 0.00 2.85
3998 4159 2.742589 GAGCTAACCAACTAACTGGCAC 59.257 50.000 0.00 0.00 40.45 5.01
3999 4160 1.810755 GCTAACCAACTAACTGGCACC 59.189 52.381 0.00 0.00 40.45 5.01
4015 4179 0.784778 CACCGCGTTGAACTTCTCTC 59.215 55.000 4.92 0.00 0.00 3.20
4047 4211 8.517878 CAATTCAGTTGGTCAAAGATATTCTGT 58.482 33.333 0.00 0.00 34.06 3.41
4060 4224 1.714794 ATTCTGTTTCTGCTCGTCCG 58.285 50.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.367512 ATCCTCCACCTCCCCTGC 60.368 66.667 0.00 0.00 0.00 4.85
1 2 2.750657 GCATCCTCCACCTCCCCTG 61.751 68.421 0.00 0.00 0.00 4.45
2 3 2.367512 GCATCCTCCACCTCCCCT 60.368 66.667 0.00 0.00 0.00 4.79
4 5 3.866582 CCGCATCCTCCACCTCCC 61.867 72.222 0.00 0.00 0.00 4.30
6 7 0.250081 GAATCCGCATCCTCCACCTC 60.250 60.000 0.00 0.00 0.00 3.85
7 8 0.982852 TGAATCCGCATCCTCCACCT 60.983 55.000 0.00 0.00 0.00 4.00
8 9 0.107214 TTGAATCCGCATCCTCCACC 60.107 55.000 0.00 0.00 0.00 4.61
9 10 1.672881 CTTTGAATCCGCATCCTCCAC 59.327 52.381 0.00 0.00 0.00 4.02
10 11 1.281867 ACTTTGAATCCGCATCCTCCA 59.718 47.619 0.00 0.00 0.00 3.86
11 12 2.044123 ACTTTGAATCCGCATCCTCC 57.956 50.000 0.00 0.00 0.00 4.30
12 13 3.561725 CCTTACTTTGAATCCGCATCCTC 59.438 47.826 0.00 0.00 0.00 3.71
13 14 3.545703 CCTTACTTTGAATCCGCATCCT 58.454 45.455 0.00 0.00 0.00 3.24
14 15 2.618709 CCCTTACTTTGAATCCGCATCC 59.381 50.000 0.00 0.00 0.00 3.51
15 16 2.618709 CCCCTTACTTTGAATCCGCATC 59.381 50.000 0.00 0.00 0.00 3.91
16 17 2.654863 CCCCTTACTTTGAATCCGCAT 58.345 47.619 0.00 0.00 0.00 4.73
17 18 1.340600 CCCCCTTACTTTGAATCCGCA 60.341 52.381 0.00 0.00 0.00 5.69
18 19 1.064979 TCCCCCTTACTTTGAATCCGC 60.065 52.381 0.00 0.00 0.00 5.54
19 20 2.504175 TCTCCCCCTTACTTTGAATCCG 59.496 50.000 0.00 0.00 0.00 4.18
20 21 4.018324 ACTTCTCCCCCTTACTTTGAATCC 60.018 45.833 0.00 0.00 0.00 3.01
21 22 5.180810 ACTTCTCCCCCTTACTTTGAATC 57.819 43.478 0.00 0.00 0.00 2.52
22 23 6.045106 TGTTACTTCTCCCCCTTACTTTGAAT 59.955 38.462 0.00 0.00 0.00 2.57
23 24 5.370289 TGTTACTTCTCCCCCTTACTTTGAA 59.630 40.000 0.00 0.00 0.00 2.69
24 25 4.909088 TGTTACTTCTCCCCCTTACTTTGA 59.091 41.667 0.00 0.00 0.00 2.69
25 26 5.237236 TGTTACTTCTCCCCCTTACTTTG 57.763 43.478 0.00 0.00 0.00 2.77
26 27 5.917545 TTGTTACTTCTCCCCCTTACTTT 57.082 39.130 0.00 0.00 0.00 2.66
27 28 5.917545 TTTGTTACTTCTCCCCCTTACTT 57.082 39.130 0.00 0.00 0.00 2.24
28 29 5.917545 TTTTGTTACTTCTCCCCCTTACT 57.082 39.130 0.00 0.00 0.00 2.24
29 30 5.417894 CCATTTTGTTACTTCTCCCCCTTAC 59.582 44.000 0.00 0.00 0.00 2.34
30 31 5.313772 TCCATTTTGTTACTTCTCCCCCTTA 59.686 40.000 0.00 0.00 0.00 2.69
31 32 4.107311 TCCATTTTGTTACTTCTCCCCCTT 59.893 41.667 0.00 0.00 0.00 3.95
32 33 3.660669 TCCATTTTGTTACTTCTCCCCCT 59.339 43.478 0.00 0.00 0.00 4.79
33 34 4.042271 TCCATTTTGTTACTTCTCCCCC 57.958 45.455 0.00 0.00 0.00 5.40
34 35 6.413783 TTTTCCATTTTGTTACTTCTCCCC 57.586 37.500 0.00 0.00 0.00 4.81
55 56 2.028567 CACTCTCTCGGCCTCTCTTTTT 60.029 50.000 0.00 0.00 0.00 1.94
56 57 1.548269 CACTCTCTCGGCCTCTCTTTT 59.452 52.381 0.00 0.00 0.00 2.27
57 58 1.181786 CACTCTCTCGGCCTCTCTTT 58.818 55.000 0.00 0.00 0.00 2.52
58 59 0.039035 ACACTCTCTCGGCCTCTCTT 59.961 55.000 0.00 0.00 0.00 2.85
59 60 0.913205 TACACTCTCTCGGCCTCTCT 59.087 55.000 0.00 0.00 0.00 3.10
60 61 1.975660 ATACACTCTCTCGGCCTCTC 58.024 55.000 0.00 0.00 0.00 3.20
61 62 2.445682 AATACACTCTCTCGGCCTCT 57.554 50.000 0.00 0.00 0.00 3.69
62 63 3.633065 ACTAAATACACTCTCTCGGCCTC 59.367 47.826 0.00 0.00 0.00 4.70
63 64 3.381908 CACTAAATACACTCTCTCGGCCT 59.618 47.826 0.00 0.00 0.00 5.19
64 65 3.491104 CCACTAAATACACTCTCTCGGCC 60.491 52.174 0.00 0.00 0.00 6.13
65 66 3.491104 CCCACTAAATACACTCTCTCGGC 60.491 52.174 0.00 0.00 0.00 5.54
66 67 3.700038 ACCCACTAAATACACTCTCTCGG 59.300 47.826 0.00 0.00 0.00 4.63
67 68 4.641094 AGACCCACTAAATACACTCTCTCG 59.359 45.833 0.00 0.00 0.00 4.04
68 69 5.680151 GCAGACCCACTAAATACACTCTCTC 60.680 48.000 0.00 0.00 0.00 3.20
69 70 4.160626 GCAGACCCACTAAATACACTCTCT 59.839 45.833 0.00 0.00 0.00 3.10
70 71 4.434520 GCAGACCCACTAAATACACTCTC 58.565 47.826 0.00 0.00 0.00 3.20
71 72 3.119101 CGCAGACCCACTAAATACACTCT 60.119 47.826 0.00 0.00 0.00 3.24
72 73 3.187700 CGCAGACCCACTAAATACACTC 58.812 50.000 0.00 0.00 0.00 3.51
73 74 2.093658 CCGCAGACCCACTAAATACACT 60.094 50.000 0.00 0.00 0.00 3.55
74 75 2.277084 CCGCAGACCCACTAAATACAC 58.723 52.381 0.00 0.00 0.00 2.90
75 76 1.903860 ACCGCAGACCCACTAAATACA 59.096 47.619 0.00 0.00 0.00 2.29
76 77 2.277084 CACCGCAGACCCACTAAATAC 58.723 52.381 0.00 0.00 0.00 1.89
77 78 1.903860 ACACCGCAGACCCACTAAATA 59.096 47.619 0.00 0.00 0.00 1.40
78 79 0.690762 ACACCGCAGACCCACTAAAT 59.309 50.000 0.00 0.00 0.00 1.40
79 80 0.034337 GACACCGCAGACCCACTAAA 59.966 55.000 0.00 0.00 0.00 1.85
80 81 1.669440 GACACCGCAGACCCACTAA 59.331 57.895 0.00 0.00 0.00 2.24
81 82 2.632544 CGACACCGCAGACCCACTA 61.633 63.158 0.00 0.00 0.00 2.74
82 83 3.991051 CGACACCGCAGACCCACT 61.991 66.667 0.00 0.00 0.00 4.00
85 86 4.436998 CTCCGACACCGCAGACCC 62.437 72.222 0.00 0.00 0.00 4.46
86 87 3.628280 GACTCCGACACCGCAGACC 62.628 68.421 0.00 0.00 0.00 3.85
87 88 2.126424 GACTCCGACACCGCAGAC 60.126 66.667 0.00 0.00 0.00 3.51
88 89 3.371063 GGACTCCGACACCGCAGA 61.371 66.667 0.00 0.00 0.00 4.26
89 90 3.220999 TTGGACTCCGACACCGCAG 62.221 63.158 0.00 0.00 0.00 5.18
90 91 3.228017 TTGGACTCCGACACCGCA 61.228 61.111 0.00 0.00 0.00 5.69
91 92 2.737376 GTTGGACTCCGACACCGC 60.737 66.667 10.32 0.00 37.82 5.68
92 93 2.430244 CGTTGGACTCCGACACCG 60.430 66.667 14.86 0.00 37.77 4.94
93 94 1.663702 CACGTTGGACTCCGACACC 60.664 63.158 14.86 0.00 37.77 4.16
94 95 1.663702 CCACGTTGGACTCCGACAC 60.664 63.158 14.86 0.00 40.96 3.67
95 96 2.732016 CCACGTTGGACTCCGACA 59.268 61.111 14.86 0.00 40.96 4.35
96 97 2.737376 GCCACGTTGGACTCCGAC 60.737 66.667 5.43 5.43 40.96 4.79
97 98 2.915659 AGCCACGTTGGACTCCGA 60.916 61.111 8.04 0.00 40.96 4.55
98 99 2.507110 ATCAGCCACGTTGGACTCCG 62.507 60.000 8.04 0.00 40.96 4.63
99 100 1.021390 CATCAGCCACGTTGGACTCC 61.021 60.000 8.04 0.00 40.96 3.85
100 101 0.320771 ACATCAGCCACGTTGGACTC 60.321 55.000 8.04 0.00 40.96 3.36
101 102 0.320771 GACATCAGCCACGTTGGACT 60.321 55.000 8.04 2.74 40.96 3.85
102 103 1.298859 GGACATCAGCCACGTTGGAC 61.299 60.000 8.04 0.76 40.96 4.02
103 104 1.003839 GGACATCAGCCACGTTGGA 60.004 57.895 8.04 0.00 40.96 3.53
104 105 2.390599 CGGACATCAGCCACGTTGG 61.391 63.158 0.00 0.00 41.55 3.77
105 106 2.390599 CCGGACATCAGCCACGTTG 61.391 63.158 0.00 0.00 0.00 4.10
106 107 2.047274 CCGGACATCAGCCACGTT 60.047 61.111 0.00 0.00 0.00 3.99
107 108 2.994995 TCCGGACATCAGCCACGT 60.995 61.111 0.00 0.00 0.00 4.49
108 109 2.509336 GTCCGGACATCAGCCACG 60.509 66.667 29.75 0.00 0.00 4.94
109 110 1.153549 GAGTCCGGACATCAGCCAC 60.154 63.158 35.00 6.70 0.00 5.01
110 111 2.359169 GGAGTCCGGACATCAGCCA 61.359 63.158 35.00 0.00 0.00 4.75
111 112 2.501610 GGAGTCCGGACATCAGCC 59.498 66.667 35.00 22.40 0.00 4.85
112 113 2.501610 GGGAGTCCGGACATCAGC 59.498 66.667 35.00 17.97 0.00 4.26
122 123 1.966451 CAGGTGTTTGCGGGAGTCC 60.966 63.158 0.00 0.00 0.00 3.85
123 124 1.070786 TCAGGTGTTTGCGGGAGTC 59.929 57.895 0.00 0.00 0.00 3.36
124 125 1.227853 GTCAGGTGTTTGCGGGAGT 60.228 57.895 0.00 0.00 0.00 3.85
125 126 1.966451 GGTCAGGTGTTTGCGGGAG 60.966 63.158 0.00 0.00 0.00 4.30
126 127 2.112297 GGTCAGGTGTTTGCGGGA 59.888 61.111 0.00 0.00 0.00 5.14
127 128 2.983592 GGGTCAGGTGTTTGCGGG 60.984 66.667 0.00 0.00 0.00 6.13
128 129 2.983592 GGGGTCAGGTGTTTGCGG 60.984 66.667 0.00 0.00 0.00 5.69
129 130 2.983592 GGGGGTCAGGTGTTTGCG 60.984 66.667 0.00 0.00 0.00 4.85
130 131 1.603739 GAGGGGGTCAGGTGTTTGC 60.604 63.158 0.00 0.00 0.00 3.68
131 132 1.074951 GGAGGGGGTCAGGTGTTTG 59.925 63.158 0.00 0.00 0.00 2.93
132 133 2.160853 GGGAGGGGGTCAGGTGTTT 61.161 63.158 0.00 0.00 0.00 2.83
133 134 2.531942 GGGAGGGGGTCAGGTGTT 60.532 66.667 0.00 0.00 0.00 3.32
134 135 4.677151 GGGGAGGGGGTCAGGTGT 62.677 72.222 0.00 0.00 0.00 4.16
149 150 1.211567 TATGTGTGTGGGGAAGGGGG 61.212 60.000 0.00 0.00 0.00 5.40
150 151 0.034477 GTATGTGTGTGGGGAAGGGG 60.034 60.000 0.00 0.00 0.00 4.79
151 152 0.991920 AGTATGTGTGTGGGGAAGGG 59.008 55.000 0.00 0.00 0.00 3.95
152 153 2.819608 CAAAGTATGTGTGTGGGGAAGG 59.180 50.000 0.00 0.00 0.00 3.46
153 154 3.486383 ACAAAGTATGTGTGTGGGGAAG 58.514 45.455 0.00 0.00 41.93 3.46
154 155 3.137544 AGACAAAGTATGTGTGTGGGGAA 59.862 43.478 0.00 0.00 36.03 3.97
155 156 2.708861 AGACAAAGTATGTGTGTGGGGA 59.291 45.455 0.00 0.00 36.03 4.81
156 157 3.140325 AGACAAAGTATGTGTGTGGGG 57.860 47.619 0.00 0.00 36.03 4.96
157 158 4.133820 TGAAGACAAAGTATGTGTGTGGG 58.866 43.478 0.00 0.00 36.03 4.61
158 159 5.947228 ATGAAGACAAAGTATGTGTGTGG 57.053 39.130 0.00 0.00 36.03 4.17
159 160 7.306167 GCAAAATGAAGACAAAGTATGTGTGTG 60.306 37.037 0.00 0.00 36.03 3.82
160 161 6.697019 GCAAAATGAAGACAAAGTATGTGTGT 59.303 34.615 0.00 0.00 36.03 3.72
161 162 6.129378 CGCAAAATGAAGACAAAGTATGTGTG 60.129 38.462 0.00 0.00 36.03 3.82
162 163 5.914635 CGCAAAATGAAGACAAAGTATGTGT 59.085 36.000 0.00 0.00 41.12 3.72
163 164 5.343058 CCGCAAAATGAAGACAAAGTATGTG 59.657 40.000 0.00 0.00 44.12 3.21
165 166 4.858692 CCCGCAAAATGAAGACAAAGTATG 59.141 41.667 0.00 0.00 0.00 2.39
166 167 4.764823 TCCCGCAAAATGAAGACAAAGTAT 59.235 37.500 0.00 0.00 0.00 2.12
167 168 4.138290 TCCCGCAAAATGAAGACAAAGTA 58.862 39.130 0.00 0.00 0.00 2.24
168 169 2.955660 TCCCGCAAAATGAAGACAAAGT 59.044 40.909 0.00 0.00 0.00 2.66
169 170 3.253188 TCTCCCGCAAAATGAAGACAAAG 59.747 43.478 0.00 0.00 0.00 2.77
170 171 3.218453 TCTCCCGCAAAATGAAGACAAA 58.782 40.909 0.00 0.00 0.00 2.83
171 172 2.857483 TCTCCCGCAAAATGAAGACAA 58.143 42.857 0.00 0.00 0.00 3.18
172 173 2.559698 TCTCCCGCAAAATGAAGACA 57.440 45.000 0.00 0.00 0.00 3.41
173 174 3.915437 TTTCTCCCGCAAAATGAAGAC 57.085 42.857 0.00 0.00 0.00 3.01
174 175 4.808558 CAATTTCTCCCGCAAAATGAAGA 58.191 39.130 0.00 0.00 0.00 2.87
175 176 3.368843 GCAATTTCTCCCGCAAAATGAAG 59.631 43.478 0.00 0.00 0.00 3.02
176 177 3.324993 GCAATTTCTCCCGCAAAATGAA 58.675 40.909 0.00 0.00 0.00 2.57
177 178 2.670789 CGCAATTTCTCCCGCAAAATGA 60.671 45.455 0.00 0.00 0.00 2.57
178 179 1.655099 CGCAATTTCTCCCGCAAAATG 59.345 47.619 0.00 0.00 0.00 2.32
179 180 1.272212 ACGCAATTTCTCCCGCAAAAT 59.728 42.857 0.00 0.00 0.00 1.82
180 181 0.671251 ACGCAATTTCTCCCGCAAAA 59.329 45.000 0.00 0.00 0.00 2.44
181 182 0.239879 GACGCAATTTCTCCCGCAAA 59.760 50.000 0.00 0.00 0.00 3.68
182 183 0.605319 AGACGCAATTTCTCCCGCAA 60.605 50.000 0.00 0.00 0.00 4.85
183 184 1.003839 AGACGCAATTTCTCCCGCA 60.004 52.632 0.00 0.00 0.00 5.69
184 185 1.425428 CAGACGCAATTTCTCCCGC 59.575 57.895 0.00 0.00 0.00 6.13
185 186 0.391130 TCCAGACGCAATTTCTCCCG 60.391 55.000 0.00 0.00 0.00 5.14
186 187 1.087501 GTCCAGACGCAATTTCTCCC 58.912 55.000 0.00 0.00 0.00 4.30
187 188 1.734465 CTGTCCAGACGCAATTTCTCC 59.266 52.381 0.00 0.00 0.00 3.71
188 189 1.129437 GCTGTCCAGACGCAATTTCTC 59.871 52.381 0.00 0.00 33.40 2.87
189 190 1.160137 GCTGTCCAGACGCAATTTCT 58.840 50.000 0.00 0.00 33.40 2.52
190 191 0.169009 GGCTGTCCAGACGCAATTTC 59.831 55.000 13.70 0.00 34.32 2.17
191 192 2.257353 GGCTGTCCAGACGCAATTT 58.743 52.632 13.70 0.00 34.32 1.82
192 193 3.987404 GGCTGTCCAGACGCAATT 58.013 55.556 13.70 0.00 34.32 2.32
198 199 4.803426 CCGCTCGGCTGTCCAGAC 62.803 72.222 0.00 0.00 0.00 3.51
200 201 4.803426 GTCCGCTCGGCTGTCCAG 62.803 72.222 2.96 0.00 34.68 3.86
202 203 4.803426 CTGTCCGCTCGGCTGTCC 62.803 72.222 2.96 0.00 34.68 4.02
203 204 1.725557 TATCTGTCCGCTCGGCTGTC 61.726 60.000 2.96 0.00 34.68 3.51
204 205 1.753078 TATCTGTCCGCTCGGCTGT 60.753 57.895 2.96 0.00 34.68 4.40
205 206 1.299468 GTATCTGTCCGCTCGGCTG 60.299 63.158 2.96 3.80 34.68 4.85
206 207 1.320344 TTGTATCTGTCCGCTCGGCT 61.320 55.000 2.96 0.00 34.68 5.52
207 208 1.141019 TTGTATCTGTCCGCTCGGC 59.859 57.895 2.96 0.00 34.68 5.54
208 209 0.456221 AGTTGTATCTGTCCGCTCGG 59.544 55.000 1.14 1.14 0.00 4.63
209 210 1.828832 GAGTTGTATCTGTCCGCTCG 58.171 55.000 0.00 0.00 0.00 5.03
210 211 1.132643 ACGAGTTGTATCTGTCCGCTC 59.867 52.381 0.00 0.00 0.00 5.03
211 212 1.135373 CACGAGTTGTATCTGTCCGCT 60.135 52.381 0.00 0.00 0.00 5.52
212 213 1.269166 CACGAGTTGTATCTGTCCGC 58.731 55.000 0.00 0.00 0.00 5.54
213 214 2.631418 ACACGAGTTGTATCTGTCCG 57.369 50.000 0.00 0.00 36.32 4.79
224 225 1.523758 GAAGCCATCCAACACGAGTT 58.476 50.000 0.00 0.00 38.88 3.01
225 226 3.233355 GAAGCCATCCAACACGAGT 57.767 52.632 0.00 0.00 0.00 4.18
234 235 1.608283 GCACCTATACGGAAGCCATCC 60.608 57.143 0.00 0.00 45.57 3.51
235 236 1.797025 GCACCTATACGGAAGCCATC 58.203 55.000 0.00 0.00 36.31 3.51
238 239 4.773209 GGCACCTATACGGAAGCC 57.227 61.111 0.00 0.00 45.24 4.35
239 240 1.335689 CGTAGGCACCTATACGGAAGC 60.336 57.143 0.00 0.00 40.74 3.86
240 241 1.335689 GCGTAGGCACCTATACGGAAG 60.336 57.143 12.58 0.00 43.75 3.46
241 242 0.670162 GCGTAGGCACCTATACGGAA 59.330 55.000 12.58 0.00 43.75 4.30
242 243 1.509644 CGCGTAGGCACCTATACGGA 61.510 60.000 12.58 0.00 43.75 4.69
243 244 1.081641 CGCGTAGGCACCTATACGG 60.082 63.158 12.58 1.59 43.75 4.02
244 245 1.081641 CCGCGTAGGCACCTATACG 60.082 63.158 4.92 7.49 45.74 3.06
245 246 1.288127 CCCGCGTAGGCACCTATAC 59.712 63.158 4.92 0.00 39.92 1.47
246 247 3.767816 CCCGCGTAGGCACCTATA 58.232 61.111 4.92 0.00 39.92 1.31
256 257 2.721971 TTAACCAAACCGCCCGCGTA 62.722 55.000 4.92 0.00 37.81 4.42
257 258 4.622650 TAACCAAACCGCCCGCGT 62.623 61.111 4.92 0.00 37.81 6.01
258 259 3.317153 CTTAACCAAACCGCCCGCG 62.317 63.158 0.00 0.00 39.44 6.46
259 260 1.517210 TTCTTAACCAAACCGCCCGC 61.517 55.000 0.00 0.00 0.00 6.13
260 261 0.239082 GTTCTTAACCAAACCGCCCG 59.761 55.000 0.00 0.00 0.00 6.13
261 262 1.612676 AGTTCTTAACCAAACCGCCC 58.387 50.000 0.00 0.00 0.00 6.13
262 263 3.317149 AGAAAGTTCTTAACCAAACCGCC 59.683 43.478 0.00 0.00 32.55 6.13
263 264 4.563337 AGAAAGTTCTTAACCAAACCGC 57.437 40.909 0.00 0.00 32.55 5.68
264 265 7.130269 CACTAAGAAAGTTCTTAACCAAACCG 58.870 38.462 13.15 3.88 45.97 4.44
265 266 7.993101 ACACTAAGAAAGTTCTTAACCAAACC 58.007 34.615 13.15 0.00 45.97 3.27
269 270 9.280174 CCATAACACTAAGAAAGTTCTTAACCA 57.720 33.333 13.15 0.00 45.97 3.67
270 271 9.281371 ACCATAACACTAAGAAAGTTCTTAACC 57.719 33.333 13.15 0.00 45.97 2.85
300 301 1.135199 TCGTTGCGGCCTACTCTAAAG 60.135 52.381 0.00 0.00 0.00 1.85
303 306 0.679002 ACTCGTTGCGGCCTACTCTA 60.679 55.000 0.00 0.00 0.00 2.43
344 347 2.025418 GGCGTGTACAACCGACTGG 61.025 63.158 9.81 0.00 42.84 4.00
370 374 3.938334 TGCTCCTTTTTGGTTTTGCTTTC 59.062 39.130 0.00 0.00 37.07 2.62
401 407 2.747460 CGTGCCTGGTGATGGTGG 60.747 66.667 0.00 0.00 0.00 4.61
402 408 2.747460 CCGTGCCTGGTGATGGTG 60.747 66.667 0.00 0.00 0.00 4.17
403 409 2.927856 TCCGTGCCTGGTGATGGT 60.928 61.111 0.00 0.00 0.00 3.55
419 425 0.534652 GGTGGATGCTCATGCTCCTC 60.535 60.000 13.03 0.09 38.98 3.71
421 427 1.099879 GTGGTGGATGCTCATGCTCC 61.100 60.000 13.31 13.31 41.34 4.70
450 456 0.036164 CGTCTCCATGGTGGGTTTGA 59.964 55.000 12.58 0.00 38.32 2.69
452 458 1.378762 CCGTCTCCATGGTGGGTTT 59.621 57.895 12.58 0.00 38.32 3.27
453 459 2.602676 CCCGTCTCCATGGTGGGTT 61.603 63.158 12.58 0.00 38.32 4.11
457 463 2.687200 TCCCCCGTCTCCATGGTG 60.687 66.667 12.58 9.91 0.00 4.17
458 464 2.365635 CTCCCCCGTCTCCATGGT 60.366 66.667 12.58 0.00 0.00 3.55
459 465 3.164269 CCTCCCCCGTCTCCATGG 61.164 72.222 4.97 4.97 0.00 3.66
460 466 3.866582 GCCTCCCCCGTCTCCATG 61.867 72.222 0.00 0.00 0.00 3.66
489 495 1.592669 CATCGGTCGAGCCATCCAC 60.593 63.158 9.39 0.00 36.97 4.02
493 499 1.144057 GTTCCATCGGTCGAGCCAT 59.856 57.895 9.39 0.00 36.97 4.40
495 501 2.202892 GGTTCCATCGGTCGAGCC 60.203 66.667 9.39 1.35 0.00 4.70
496 502 1.079405 TTGGTTCCATCGGTCGAGC 60.079 57.895 4.06 4.06 0.00 5.03
497 503 0.246635 AGTTGGTTCCATCGGTCGAG 59.753 55.000 0.00 0.00 0.00 4.04
498 504 0.682852 AAGTTGGTTCCATCGGTCGA 59.317 50.000 0.00 0.00 0.00 4.20
499 505 0.796312 CAAGTTGGTTCCATCGGTCG 59.204 55.000 0.00 0.00 0.00 4.79
500 506 0.521735 GCAAGTTGGTTCCATCGGTC 59.478 55.000 4.75 0.00 0.00 4.79
501 507 0.179004 TGCAAGTTGGTTCCATCGGT 60.179 50.000 4.75 0.00 0.00 4.69
502 508 0.523072 CTGCAAGTTGGTTCCATCGG 59.477 55.000 4.75 0.00 0.00 4.18
503 509 0.523072 CCTGCAAGTTGGTTCCATCG 59.477 55.000 4.75 0.00 0.00 3.84
504 510 1.541588 GACCTGCAAGTTGGTTCCATC 59.458 52.381 4.75 0.00 36.59 3.51
505 511 1.133513 TGACCTGCAAGTTGGTTCCAT 60.134 47.619 4.75 0.00 36.59 3.41
506 512 0.257328 TGACCTGCAAGTTGGTTCCA 59.743 50.000 4.75 0.00 36.59 3.53
507 513 1.541588 GATGACCTGCAAGTTGGTTCC 59.458 52.381 4.75 0.00 36.59 3.62
508 514 1.197721 CGATGACCTGCAAGTTGGTTC 59.802 52.381 4.75 0.00 36.59 3.62
509 515 1.238439 CGATGACCTGCAAGTTGGTT 58.762 50.000 4.75 0.00 36.59 3.67
510 516 1.237285 GCGATGACCTGCAAGTTGGT 61.237 55.000 4.75 0.00 39.60 3.67
511 517 1.503542 GCGATGACCTGCAAGTTGG 59.496 57.895 4.75 0.00 0.00 3.77
580 590 4.394712 AAAGAGCGGCGAGTGGGG 62.395 66.667 12.98 0.00 0.00 4.96
599 609 0.032813 AAACAGGAGATGGGCATGGG 60.033 55.000 0.00 0.00 0.00 4.00
600 610 1.396653 GAAACAGGAGATGGGCATGG 58.603 55.000 0.00 0.00 0.00 3.66
601 611 1.396653 GGAAACAGGAGATGGGCATG 58.603 55.000 0.00 0.00 0.00 4.06
602 612 0.107017 CGGAAACAGGAGATGGGCAT 60.107 55.000 0.00 0.00 0.00 4.40
603 613 1.299648 CGGAAACAGGAGATGGGCA 59.700 57.895 0.00 0.00 0.00 5.36
604 614 2.115291 GCGGAAACAGGAGATGGGC 61.115 63.158 0.00 0.00 0.00 5.36
639 653 3.157949 GGAAGGAGGCGAGGAGGG 61.158 72.222 0.00 0.00 0.00 4.30
650 664 1.093408 TGAGGAGGAAGGAGGAAGGA 58.907 55.000 0.00 0.00 0.00 3.36
651 665 1.199615 GTGAGGAGGAAGGAGGAAGG 58.800 60.000 0.00 0.00 0.00 3.46
652 666 1.199615 GGTGAGGAGGAAGGAGGAAG 58.800 60.000 0.00 0.00 0.00 3.46
653 667 0.252742 GGGTGAGGAGGAAGGAGGAA 60.253 60.000 0.00 0.00 0.00 3.36
654 668 1.156322 AGGGTGAGGAGGAAGGAGGA 61.156 60.000 0.00 0.00 0.00 3.71
655 669 0.689412 GAGGGTGAGGAGGAAGGAGG 60.689 65.000 0.00 0.00 0.00 4.30
656 670 0.689412 GGAGGGTGAGGAGGAAGGAG 60.689 65.000 0.00 0.00 0.00 3.69
657 671 1.156322 AGGAGGGTGAGGAGGAAGGA 61.156 60.000 0.00 0.00 0.00 3.36
658 672 0.689412 GAGGAGGGTGAGGAGGAAGG 60.689 65.000 0.00 0.00 0.00 3.46
659 673 0.041833 TGAGGAGGGTGAGGAGGAAG 59.958 60.000 0.00 0.00 0.00 3.46
660 674 0.719015 ATGAGGAGGGTGAGGAGGAA 59.281 55.000 0.00 0.00 0.00 3.36
702 723 0.604780 TCTCTGGTTGCTCTGCTTGC 60.605 55.000 0.00 0.00 0.00 4.01
757 784 0.108138 ATCGGGAGGCGAAAAGTGAG 60.108 55.000 0.00 0.00 0.00 3.51
774 801 1.301009 GCGGGATCTCGGTTGGATC 60.301 63.158 18.35 0.00 38.92 3.36
783 823 1.590259 GTGAAGCGAGCGGGATCTC 60.590 63.158 0.00 0.00 0.00 2.75
794 834 1.441016 GCAGCCGAAAAGTGAAGCG 60.441 57.895 0.00 0.00 0.00 4.68
812 852 2.885644 CCCGTGACCGCAATCGAG 60.886 66.667 0.00 0.00 38.10 4.04
842 882 0.240945 CCACAAATGGCCGAACTGAC 59.759 55.000 0.00 0.00 39.82 3.51
849 889 1.006337 CACAACCCACAAATGGCCG 60.006 57.895 0.00 0.00 45.76 6.13
862 902 1.664965 AGAGTTCGCGAGCCACAAC 60.665 57.895 19.83 8.86 0.00 3.32
863 903 1.664649 CAGAGTTCGCGAGCCACAA 60.665 57.895 19.83 0.00 0.00 3.33
864 904 1.877576 ATCAGAGTTCGCGAGCCACA 61.878 55.000 19.83 1.61 0.00 4.17
865 905 1.142778 GATCAGAGTTCGCGAGCCAC 61.143 60.000 19.83 10.46 0.00 5.01
866 906 1.139734 GATCAGAGTTCGCGAGCCA 59.860 57.895 19.83 0.00 0.00 4.75
867 907 1.590259 GGATCAGAGTTCGCGAGCC 60.590 63.158 19.83 11.01 0.00 4.70
868 908 1.941734 CGGATCAGAGTTCGCGAGC 60.942 63.158 15.76 15.76 0.00 5.03
874 914 0.526662 ACGGACACGGATCAGAGTTC 59.473 55.000 0.00 0.00 46.48 3.01
967 1020 1.722507 GCAACACGACGAAGCAAGC 60.723 57.895 0.00 0.00 0.00 4.01
971 1024 1.722507 GCAAGCAACACGACGAAGC 60.723 57.895 0.00 0.00 0.00 3.86
1039 1092 1.000896 AATCAAGCAACCCCTCCCG 60.001 57.895 0.00 0.00 0.00 5.14
1082 1138 4.436998 CTCCACCGCTCACCGACC 62.437 72.222 0.00 0.00 40.02 4.79
1083 1139 2.711922 ATCTCCACCGCTCACCGAC 61.712 63.158 0.00 0.00 40.02 4.79
1084 1140 2.362503 ATCTCCACCGCTCACCGA 60.363 61.111 0.00 0.00 40.02 4.69
1085 1141 2.021068 ATCATCTCCACCGCTCACCG 62.021 60.000 0.00 0.00 0.00 4.94
1120 1176 1.500396 CATGCGCCGATCCATCATG 59.500 57.895 4.18 0.00 0.00 3.07
1161 1220 2.854187 GAACCCGAAGCCCTTCTCGG 62.854 65.000 3.53 3.53 44.50 4.63
1294 1368 3.336715 CTCGATGCCGTCCACGTCA 62.337 63.158 0.00 0.00 37.74 4.35
2407 2505 1.495584 GCACGTTCTCGCAGGTGAAA 61.496 55.000 0.00 0.00 41.18 2.69
2409 2507 2.355837 GCACGTTCTCGCAGGTGA 60.356 61.111 0.00 0.00 41.18 4.02
2492 2590 1.971695 GGTGGTTGTACCTGCAGGC 60.972 63.158 33.06 17.90 39.58 4.85
2616 2714 4.899239 GGCATCTCTGGTCGGCCG 62.899 72.222 22.12 22.12 37.67 6.13
2684 2782 4.077188 GTCGTTGACTGCGCCTGC 62.077 66.667 4.18 0.00 43.20 4.85
2685 2783 3.767230 CGTCGTTGACTGCGCCTG 61.767 66.667 4.18 0.00 0.00 4.85
2865 2972 2.995574 ACAGGTCGAACCCCGGAG 60.996 66.667 0.73 0.00 39.75 4.63
2866 2973 2.993264 GACAGGTCGAACCCCGGA 60.993 66.667 0.73 0.00 39.75 5.14
2922 3029 2.980233 GCCCAACGTGCTTCTGCT 60.980 61.111 0.00 0.00 40.48 4.24
2938 3045 2.152016 GTTCAGTAGAACCAGTTGGGC 58.848 52.381 2.79 0.00 46.68 5.36
2960 3067 1.509548 ATGGGTGGTTCCTCCTTGGG 61.510 60.000 9.38 0.00 37.07 4.12
2989 3096 2.894126 TCTAATGGCCTAGAGCTACTGC 59.106 50.000 3.32 0.00 43.05 4.40
2990 3097 5.736951 ATTCTAATGGCCTAGAGCTACTG 57.263 43.478 3.32 0.00 43.05 2.74
2991 3098 5.841237 TGAATTCTAATGGCCTAGAGCTACT 59.159 40.000 3.32 0.00 43.05 2.57
3066 3174 1.135315 CAACATGGCCTGGATTTGACG 60.135 52.381 3.32 0.00 0.00 4.35
3160 3270 6.980051 AGATTTTAAGGTGGATGAACGTAC 57.020 37.500 0.00 0.00 0.00 3.67
3227 3338 0.805614 CGAGCGAGGAGAAGAACAGA 59.194 55.000 0.00 0.00 0.00 3.41
3229 3340 0.241213 CACGAGCGAGGAGAAGAACA 59.759 55.000 0.00 0.00 0.00 3.18
3256 3367 6.763355 TGAAGTCTTCTAGATCAGCAAAAGT 58.237 36.000 13.67 0.00 0.00 2.66
3308 3419 1.356527 GCGTGTGTAAAGCTACCCCG 61.357 60.000 0.00 0.00 0.00 5.73
3314 3425 0.602905 GAGGGTGCGTGTGTAAAGCT 60.603 55.000 0.00 0.00 0.00 3.74
3318 3429 1.669440 GGAGAGGGTGCGTGTGTAA 59.331 57.895 0.00 0.00 0.00 2.41
3319 3430 2.280552 GGGAGAGGGTGCGTGTGTA 61.281 63.158 0.00 0.00 0.00 2.90
3320 3431 3.626924 GGGAGAGGGTGCGTGTGT 61.627 66.667 0.00 0.00 0.00 3.72
3321 3432 2.397413 AAAGGGAGAGGGTGCGTGTG 62.397 60.000 0.00 0.00 0.00 3.82
3322 3433 2.113243 GAAAGGGAGAGGGTGCGTGT 62.113 60.000 0.00 0.00 0.00 4.49
3323 3434 1.376037 GAAAGGGAGAGGGTGCGTG 60.376 63.158 0.00 0.00 0.00 5.34
3326 3437 2.269241 CGGAAAGGGAGAGGGTGC 59.731 66.667 0.00 0.00 0.00 5.01
3328 3439 1.990614 GAGCGGAAAGGGAGAGGGT 60.991 63.158 0.00 0.00 0.00 4.34
3330 3441 2.904131 GGAGCGGAAAGGGAGAGG 59.096 66.667 0.00 0.00 0.00 3.69
3410 3526 1.145598 CCTGGCGAGCATGTGAGAT 59.854 57.895 0.00 0.00 0.00 2.75
3411 3527 2.580815 CCTGGCGAGCATGTGAGA 59.419 61.111 0.00 0.00 0.00 3.27
3447 3563 2.587247 GCCTCTGCCTCAGGTGACA 61.587 63.158 0.00 0.00 32.98 3.58
3518 3635 0.162507 CAAAGTCAGCAGCGTCTTCG 59.837 55.000 0.00 0.00 40.37 3.79
3540 3657 4.980805 GCCGTGTTGAGCCCGTCA 62.981 66.667 0.00 0.00 0.00 4.35
3575 3701 4.662278 TCAACTGAAATCCCCGAGAATTT 58.338 39.130 0.00 0.00 0.00 1.82
3581 3707 2.679639 CGGATTCAACTGAAATCCCCGA 60.680 50.000 14.96 0.00 38.16 5.14
3615 3741 8.038492 ACTCAGTAAAATTCTCAGATTTCTGC 57.962 34.615 2.60 0.00 43.46 4.26
3639 3780 4.084433 TCGTTTATGTTTGCCTGTACGAAC 60.084 41.667 0.00 0.00 34.34 3.95
3640 3781 4.056740 TCGTTTATGTTTGCCTGTACGAA 58.943 39.130 0.00 0.00 34.34 3.85
3662 3818 2.039084 GGTCCCTGAATCTGACACTGTT 59.961 50.000 0.00 0.00 0.00 3.16
3666 3822 2.237143 TGATGGTCCCTGAATCTGACAC 59.763 50.000 0.00 0.00 0.00 3.67
3706 3862 2.426522 ACCACTCATGAAATGTCCACG 58.573 47.619 0.00 0.00 46.80 4.94
3709 3865 6.623767 GCTTAGAAACCACTCATGAAATGTCC 60.624 42.308 0.00 0.00 46.80 4.02
3717 3873 3.997021 AGTTCGCTTAGAAACCACTCATG 59.003 43.478 0.00 0.00 41.10 3.07
3735 3891 2.284190 CTAAGCCTGCTTAGCCAGTTC 58.716 52.381 22.01 0.00 45.76 3.01
3812 3968 6.041637 GGGGTGCTTTATTTTAAGATAAGGGG 59.958 42.308 9.13 2.40 0.00 4.79
3814 3970 7.559897 TCAGGGGTGCTTTATTTTAAGATAAGG 59.440 37.037 4.12 4.12 0.00 2.69
3815 3971 8.519799 TCAGGGGTGCTTTATTTTAAGATAAG 57.480 34.615 0.00 0.00 0.00 1.73
3816 3972 9.487442 AATCAGGGGTGCTTTATTTTAAGATAA 57.513 29.630 0.00 0.00 0.00 1.75
3818 3974 7.978099 AATCAGGGGTGCTTTATTTTAAGAT 57.022 32.000 0.00 0.00 0.00 2.40
3848 4005 0.532862 AACCAACTGGACGCACAGAG 60.533 55.000 13.19 5.79 40.97 3.35
3913 4074 5.875359 CCTCCTGATTTGTTTAGTCTGGTAC 59.125 44.000 0.00 0.00 33.98 3.34
3914 4075 5.570844 GCCTCCTGATTTGTTTAGTCTGGTA 60.571 44.000 0.00 0.00 33.98 3.25
3915 4076 4.807643 GCCTCCTGATTTGTTTAGTCTGGT 60.808 45.833 0.00 0.00 33.98 4.00
3934 4095 0.884704 TCTTCAAACAGGCGTGCCTC 60.885 55.000 11.22 0.00 46.28 4.70
3979 4140 1.810755 GGTGCCAGTTAGTTGGTTAGC 59.189 52.381 0.00 0.00 40.49 3.09
3985 4146 1.503818 AACGCGGTGCCAGTTAGTTG 61.504 55.000 12.47 0.00 0.00 3.16
3998 4159 1.457303 CTTGAGAGAAGTTCAACGCGG 59.543 52.381 12.47 0.00 31.66 6.46
3999 4160 2.394708 TCTTGAGAGAAGTTCAACGCG 58.605 47.619 3.53 3.53 31.66 6.01
4015 4179 6.563422 TCTTTGACCAACTGAATTGTTCTTG 58.437 36.000 0.00 0.00 36.47 3.02
4037 4201 4.688021 GGACGAGCAGAAACAGAATATCT 58.312 43.478 0.00 0.00 0.00 1.98
4047 4211 3.909258 GACCGCGGACGAGCAGAAA 62.909 63.158 35.90 0.00 43.93 2.52
4060 4224 0.743345 AGCCGATTAACAAGGACCGC 60.743 55.000 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.