Multiple sequence alignment - TraesCS2A01G098700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G098700 chr2A 100.000 3346 0 0 1 3346 51943509 51946854 0.000000e+00 6180
1 TraesCS2A01G098700 chr2A 93.899 1131 57 5 1034 2164 44123267 44124385 0.000000e+00 1696
2 TraesCS2A01G098700 chr2A 87.752 596 46 15 458 1038 44108771 44109354 0.000000e+00 671
3 TraesCS2A01G098700 chr2A 95.847 313 13 0 3034 3346 357469610 357469922 1.070000e-139 507
4 TraesCS2A01G098700 chr2A 92.093 215 8 6 2606 2814 44151909 44152120 9.080000e-76 294
5 TraesCS2A01G098700 chr2A 91.026 78 7 0 4 81 44108471 44108548 4.570000e-19 106
6 TraesCS2A01G098700 chr2A 91.892 74 4 2 186 257 44108570 44108643 5.910000e-18 102
7 TraesCS2A01G098700 chr2D 92.042 2199 92 29 315 2476 50236754 50238906 0.000000e+00 3014
8 TraesCS2A01G098700 chr2D 92.645 2053 115 15 439 2476 39322213 39320182 0.000000e+00 2922
9 TraesCS2A01G098700 chr2D 87.456 853 64 12 1961 2795 50158065 50157238 0.000000e+00 942
10 TraesCS2A01G098700 chr2D 96.604 265 9 0 1633 1897 50160455 50160191 1.100000e-119 440
11 TraesCS2A01G098700 chr2D 87.405 262 22 6 2564 2819 50239110 50239366 1.170000e-74 291
12 TraesCS2A01G098700 chr2D 91.628 215 9 6 2606 2814 39310606 39310395 4.220000e-74 289
13 TraesCS2A01G098700 chr2D 96.629 89 3 0 2945 3033 50239724 50239812 7.480000e-32 148
14 TraesCS2A01G098700 chr2D 84.672 137 21 0 3 139 50236558 50236694 1.620000e-28 137
15 TraesCS2A01G098700 chr2D 92.593 81 6 0 4 84 39322510 39322430 2.110000e-22 117
16 TraesCS2A01G098700 chr2D 91.892 74 4 2 186 257 39322411 39322338 5.910000e-18 102
17 TraesCS2A01G098700 chr2B 89.308 2441 136 54 441 2819 78070816 78073193 0.000000e+00 2946
18 TraesCS2A01G098700 chr2B 91.367 1390 73 18 1078 2447 77995749 77994387 0.000000e+00 1858
19 TraesCS2A01G098700 chr2B 91.840 1201 69 11 1189 2375 78012116 78010931 0.000000e+00 1648
20 TraesCS2A01G098700 chr2B 94.277 996 43 7 1572 2563 78047843 78046858 0.000000e+00 1511
21 TraesCS2A01G098700 chr2B 96.484 256 9 0 1633 1888 78049649 78049394 1.110000e-114 424
22 TraesCS2A01G098700 chr2B 94.505 91 5 0 2945 3035 78079161 78079251 1.250000e-29 141
23 TraesCS2A01G098700 chr2B 80.000 210 23 8 319 526 78070315 78070507 1.620000e-28 137
24 TraesCS2A01G098700 chr6A 95.541 314 14 0 3033 3346 505215382 505215695 1.390000e-138 503
25 TraesCS2A01G098700 chr5A 95.541 314 14 0 3033 3346 383318586 383318273 1.390000e-138 503
26 TraesCS2A01G098700 chr5A 94.720 322 16 1 3026 3346 144681765 144681444 1.790000e-137 499
27 TraesCS2A01G098700 chr4A 95.541 314 14 0 3033 3346 395364521 395364834 1.390000e-138 503
28 TraesCS2A01G098700 chr4A 95.541 314 14 0 3033 3346 476256657 476256970 1.390000e-138 503
29 TraesCS2A01G098700 chr3A 95.541 314 14 0 3033 3346 231099468 231099781 1.390000e-138 503
30 TraesCS2A01G098700 chr3A 95.541 314 14 0 3033 3346 559473046 559473359 1.390000e-138 503
31 TraesCS2A01G098700 chr3A 95.541 314 14 0 3033 3346 686594622 686594935 1.390000e-138 503
32 TraesCS2A01G098700 chr4D 78.671 286 49 11 1729 2005 484400804 484401086 2.650000e-41 180
33 TraesCS2A01G098700 chr4B 78.000 300 54 11 1715 2005 616304178 616304474 9.540000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G098700 chr2A 51943509 51946854 3345 False 6180.0 6180 100.000000 1 3346 1 chr2A.!!$F3 3345
1 TraesCS2A01G098700 chr2A 44123267 44124385 1118 False 1696.0 1696 93.899000 1034 2164 1 chr2A.!!$F1 1130
2 TraesCS2A01G098700 chr2A 44108471 44109354 883 False 293.0 671 90.223333 4 1038 3 chr2A.!!$F5 1034
3 TraesCS2A01G098700 chr2D 39320182 39322510 2328 True 1047.0 2922 92.376667 4 2476 3 chr2D.!!$R2 2472
4 TraesCS2A01G098700 chr2D 50236558 50239812 3254 False 897.5 3014 90.187000 3 3033 4 chr2D.!!$F1 3030
5 TraesCS2A01G098700 chr2D 50157238 50160455 3217 True 691.0 942 92.030000 1633 2795 2 chr2D.!!$R3 1162
6 TraesCS2A01G098700 chr2B 77994387 77995749 1362 True 1858.0 1858 91.367000 1078 2447 1 chr2B.!!$R1 1369
7 TraesCS2A01G098700 chr2B 78010931 78012116 1185 True 1648.0 1648 91.840000 1189 2375 1 chr2B.!!$R2 1186
8 TraesCS2A01G098700 chr2B 78070315 78073193 2878 False 1541.5 2946 84.654000 319 2819 2 chr2B.!!$F2 2500
9 TraesCS2A01G098700 chr2B 78046858 78049649 2791 True 967.5 1511 95.380500 1572 2563 2 chr2B.!!$R3 991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 1434 0.249911 ATAAGCTAAGCTTCGGCGGG 60.25 55.0 7.21 1.2 46.77 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2702 3467 0.034896 AAACGAACGGCAGTCCAGAT 59.965 50.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.125257 CACCAAAGCCAAATTTCCTGTTTTT 59.875 36.000 0.00 0.00 0.00 1.94
88 89 2.501128 ATCCCGTGATGACGCAGG 59.499 61.111 0.00 0.00 44.68 4.85
117 118 1.794701 CATGTGGCCGAGAATACGATG 59.205 52.381 0.00 0.00 35.09 3.84
127 128 0.316196 GAATACGATGGCTTGCGCAC 60.316 55.000 11.12 0.00 38.10 5.34
134 135 1.066002 GATGGCTTGCGCACATGTATT 59.934 47.619 11.12 0.00 38.10 1.89
135 136 0.451383 TGGCTTGCGCACATGTATTC 59.549 50.000 11.12 0.00 38.10 1.75
137 138 1.133025 GGCTTGCGCACATGTATTCTT 59.867 47.619 11.12 0.00 38.10 2.52
138 139 2.354510 GGCTTGCGCACATGTATTCTTA 59.645 45.455 11.12 0.00 38.10 2.10
142 143 4.857871 TGCGCACATGTATTCTTACTTC 57.142 40.909 5.66 0.00 0.00 3.01
162 163 5.531659 ACTTCTTAGTTGACTGAGAACTCGA 59.468 40.000 12.64 0.00 41.67 4.04
163 164 6.039493 ACTTCTTAGTTGACTGAGAACTCGAA 59.961 38.462 12.64 0.00 41.67 3.71
165 166 5.531659 TCTTAGTTGACTGAGAACTCGAACT 59.468 40.000 3.43 0.00 35.94 3.01
167 168 4.363999 AGTTGACTGAGAACTCGAACTTG 58.636 43.478 0.00 0.00 0.00 3.16
177 178 7.757526 TGAGAACTCGAACTTGATTTTTCAAA 58.242 30.769 0.00 0.00 0.00 2.69
180 181 9.586435 AGAACTCGAACTTGATTTTTCAAATTT 57.414 25.926 0.00 0.00 0.00 1.82
184 185 7.968246 TCGAACTTGATTTTTCAAATTTGCAA 58.032 26.923 13.54 6.22 0.00 4.08
258 261 1.608590 CTCGCATATTCCCCGCAAAAT 59.391 47.619 0.00 0.00 0.00 1.82
261 264 3.823873 TCGCATATTCCCCGCAAAATAAT 59.176 39.130 0.00 0.00 0.00 1.28
263 266 5.473846 TCGCATATTCCCCGCAAAATAATAA 59.526 36.000 0.00 0.00 0.00 1.40
264 267 6.151985 TCGCATATTCCCCGCAAAATAATAAT 59.848 34.615 0.00 0.00 0.00 1.28
349 352 2.898181 TGCTCACGCATGTTGTAATG 57.102 45.000 0.00 0.00 42.25 1.90
421 430 3.118665 GGACATGGGAAATCAACATTGGG 60.119 47.826 0.00 0.00 0.00 4.12
422 431 3.768757 GACATGGGAAATCAACATTGGGA 59.231 43.478 0.00 0.00 0.00 4.37
423 432 4.364470 ACATGGGAAATCAACATTGGGAT 58.636 39.130 0.00 0.00 0.00 3.85
427 436 5.558818 TGGGAAATCAACATTGGGATTTTG 58.441 37.500 15.35 0.43 42.18 2.44
428 437 5.309020 TGGGAAATCAACATTGGGATTTTGA 59.691 36.000 15.35 5.05 42.18 2.69
429 438 5.643348 GGGAAATCAACATTGGGATTTTGAC 59.357 40.000 15.35 10.86 42.18 3.18
430 439 5.348451 GGAAATCAACATTGGGATTTTGACG 59.652 40.000 15.35 0.00 42.18 4.35
432 441 2.625314 TCAACATTGGGATTTTGACGCA 59.375 40.909 0.00 0.00 29.42 5.24
433 442 3.068732 TCAACATTGGGATTTTGACGCAA 59.931 39.130 0.00 0.00 42.44 4.85
434 443 3.742433 ACATTGGGATTTTGACGCAAA 57.258 38.095 0.00 1.63 41.81 3.68
435 444 4.065321 ACATTGGGATTTTGACGCAAAA 57.935 36.364 16.31 16.31 45.41 2.44
437 446 3.526931 TTGGGATTTTGACGCAAAACA 57.473 38.095 16.31 9.82 44.40 2.83
443 452 5.906838 GGGATTTTGACGCAAAACAAATTTC 59.093 36.000 16.31 10.63 44.40 2.17
506 519 1.482182 GGACAATTTTCTCCCCATGCC 59.518 52.381 0.00 0.00 0.00 4.40
552 565 1.704641 GAAACCCTCCCAAAACTGCT 58.295 50.000 0.00 0.00 0.00 4.24
560 573 3.486383 CTCCCAAAACTGCTAACTTGGA 58.514 45.455 9.04 0.00 40.72 3.53
616 657 6.569693 GGAACACAACAAAAATACGTACGTAC 59.430 38.462 28.99 15.90 33.01 3.67
687 1092 7.838771 ATACCCTACACGTTTTAATCAAGAC 57.161 36.000 0.00 0.00 0.00 3.01
688 1093 5.613329 ACCCTACACGTTTTAATCAAGACA 58.387 37.500 0.00 0.00 0.00 3.41
689 1094 6.056884 ACCCTACACGTTTTAATCAAGACAA 58.943 36.000 0.00 0.00 0.00 3.18
743 1176 1.118965 TTGACTCCGTGGAGAAGGCA 61.119 55.000 22.36 11.14 44.53 4.75
922 1358 3.005050 CACCTCCGTACTGTGACTTGTTA 59.995 47.826 0.00 0.00 31.66 2.41
998 1434 0.249911 ATAAGCTAAGCTTCGGCGGG 60.250 55.000 7.21 1.20 46.77 6.13
1014 1450 1.296392 GGGCATGGGGAACTTTTGC 59.704 57.895 0.00 0.00 0.00 3.68
1217 1655 1.372683 GAGCAGCACCTCCAACTCA 59.627 57.895 0.00 0.00 0.00 3.41
1336 1789 1.767388 CGTCGCTCAAGTCGTTCAC 59.233 57.895 0.00 0.00 0.00 3.18
1583 2047 2.145225 CGACAACCTCGTCAAGCTG 58.855 57.895 0.00 0.00 37.64 4.24
1586 2050 0.532862 ACAACCTCGTCAAGCTGGTG 60.533 55.000 0.00 0.00 32.53 4.17
1602 2066 3.449227 TGGGCTACTGCTCCGACG 61.449 66.667 0.00 0.00 39.40 5.12
1664 2271 1.216710 CAGCCTCGAGAACCACCTC 59.783 63.158 15.71 0.00 0.00 3.85
2184 2798 1.071471 CTGCAGAACGACCCCAAGT 59.929 57.895 8.42 0.00 0.00 3.16
2273 2887 1.610327 CTCCTCCTCCTCCTCGACA 59.390 63.158 0.00 0.00 0.00 4.35
2411 3044 2.471743 GTGTTCGTCTGTGCAGTAGAAC 59.528 50.000 22.18 22.18 41.39 3.01
2440 3082 7.773489 TTTGTAGATTGGAAATTGGACATCA 57.227 32.000 0.00 0.00 0.00 3.07
2476 3118 3.278574 TCAGCCGTTTGGAATATTGGAG 58.721 45.455 0.00 0.00 37.49 3.86
2477 3119 3.016736 CAGCCGTTTGGAATATTGGAGT 58.983 45.455 0.00 0.00 37.49 3.85
2478 3120 4.080807 TCAGCCGTTTGGAATATTGGAGTA 60.081 41.667 0.00 0.00 37.49 2.59
2479 3121 4.821805 CAGCCGTTTGGAATATTGGAGTAT 59.178 41.667 0.00 0.00 37.49 2.12
2481 3123 6.485313 CAGCCGTTTGGAATATTGGAGTATTA 59.515 38.462 0.00 0.00 37.49 0.98
2482 3124 7.174946 CAGCCGTTTGGAATATTGGAGTATTAT 59.825 37.037 0.00 0.00 37.49 1.28
2518 3239 0.379669 CCGGATTGCACAGAGATTGC 59.620 55.000 0.00 0.00 40.63 3.56
2550 3295 1.250328 TCCATTGACTGGCTTGCAAG 58.750 50.000 22.44 22.44 45.52 4.01
2612 3373 4.347000 GTGAACACTTCCTAGCCCCATATA 59.653 45.833 0.00 0.00 0.00 0.86
2616 3377 3.008049 CACTTCCTAGCCCCATATACACC 59.992 52.174 0.00 0.00 0.00 4.16
2617 3378 1.933021 TCCTAGCCCCATATACACCG 58.067 55.000 0.00 0.00 0.00 4.94
2619 3380 1.549170 CCTAGCCCCATATACACCGTC 59.451 57.143 0.00 0.00 0.00 4.79
2621 3382 1.502690 AGCCCCATATACACCGTCAA 58.497 50.000 0.00 0.00 0.00 3.18
2667 3432 9.481800 CATACATGAATATAAATGTCGATGCAC 57.518 33.333 0.00 0.00 38.05 4.57
2702 3467 2.508436 TTGTGGTGCGCAAGAGGA 59.492 55.556 14.00 0.00 43.02 3.71
2769 3538 0.109272 CGCTACGTCCTTTGCTCTGA 60.109 55.000 0.00 0.00 0.00 3.27
2772 3541 3.159984 CGTCCTTTGCTCTGACGC 58.840 61.111 0.00 0.00 44.29 5.19
2800 3575 4.742201 CTGACCACACGCCTCGGG 62.742 72.222 0.00 0.00 35.82 5.14
2815 3590 2.223923 CCTCGGGTGCTCAATCTCTAAG 60.224 54.545 0.00 0.00 0.00 2.18
2819 3594 3.648009 GGGTGCTCAATCTCTAAGATCG 58.352 50.000 0.00 0.00 32.89 3.69
2820 3595 3.056304 GGTGCTCAATCTCTAAGATCGC 58.944 50.000 0.00 0.00 32.89 4.58
2821 3596 3.243704 GGTGCTCAATCTCTAAGATCGCT 60.244 47.826 0.00 0.00 32.89 4.93
2825 3600 2.030717 TCAATCTCTAAGATCGCTCGGC 60.031 50.000 0.00 0.00 32.89 5.54
2851 3643 0.959553 GTCGATCTCCCTCGCCATTA 59.040 55.000 0.00 0.00 38.52 1.90
2854 3646 1.068588 CGATCTCCCTCGCCATTAACA 59.931 52.381 0.00 0.00 0.00 2.41
2855 3647 2.483013 CGATCTCCCTCGCCATTAACAA 60.483 50.000 0.00 0.00 0.00 2.83
2856 3648 2.691409 TCTCCCTCGCCATTAACAAG 57.309 50.000 0.00 0.00 0.00 3.16
2858 3650 0.618458 TCCCTCGCCATTAACAAGCT 59.382 50.000 0.00 0.00 0.00 3.74
2859 3651 0.734889 CCCTCGCCATTAACAAGCTG 59.265 55.000 0.00 0.00 0.00 4.24
2860 3652 1.678728 CCCTCGCCATTAACAAGCTGA 60.679 52.381 0.00 0.00 0.00 4.26
2861 3653 1.398390 CCTCGCCATTAACAAGCTGAC 59.602 52.381 0.00 0.00 0.00 3.51
2862 3654 2.350522 CTCGCCATTAACAAGCTGACT 58.649 47.619 0.00 0.00 0.00 3.41
2863 3655 2.076100 TCGCCATTAACAAGCTGACTG 58.924 47.619 0.00 0.00 0.00 3.51
2864 3656 1.131126 CGCCATTAACAAGCTGACTGG 59.869 52.381 0.00 0.00 0.00 4.00
2865 3657 2.162681 GCCATTAACAAGCTGACTGGT 58.837 47.619 0.00 0.00 0.00 4.00
2866 3658 3.343617 GCCATTAACAAGCTGACTGGTA 58.656 45.455 0.00 0.00 26.45 3.25
2867 3659 3.947834 GCCATTAACAAGCTGACTGGTAT 59.052 43.478 0.00 0.00 26.45 2.73
2868 3660 4.201950 GCCATTAACAAGCTGACTGGTATG 60.202 45.833 0.00 0.00 26.45 2.39
2869 3661 4.336433 CCATTAACAAGCTGACTGGTATGG 59.664 45.833 0.00 0.00 32.16 2.74
2870 3662 4.634012 TTAACAAGCTGACTGGTATGGT 57.366 40.909 0.00 0.00 26.45 3.55
2871 3663 3.508845 AACAAGCTGACTGGTATGGTT 57.491 42.857 0.00 0.00 26.45 3.67
2872 3664 2.783135 ACAAGCTGACTGGTATGGTTG 58.217 47.619 12.28 12.28 41.74 3.77
2873 3665 2.106511 ACAAGCTGACTGGTATGGTTGT 59.893 45.455 13.15 13.15 43.36 3.32
2901 3761 1.135859 CATCTGGAAAGAACACAGCGC 60.136 52.381 0.00 0.00 32.42 5.92
2902 3762 0.179059 TCTGGAAAGAACACAGCGCA 60.179 50.000 11.47 0.00 32.42 6.09
2925 3786 7.807907 CGCAAAGTGTTTAAGAATAGGTTCAAT 59.192 33.333 0.00 0.00 36.79 2.57
2932 3793 8.879759 TGTTTAAGAATAGGTTCAATTAGCTCG 58.120 33.333 0.00 0.00 36.79 5.03
2933 3794 9.095065 GTTTAAGAATAGGTTCAATTAGCTCGA 57.905 33.333 0.00 0.00 36.79 4.04
2939 3800 4.446371 AGGTTCAATTAGCTCGATCTTGG 58.554 43.478 0.00 0.00 0.00 3.61
2944 3805 7.116519 GGTTCAATTAGCTCGATCTTGGTATAC 59.883 40.741 0.00 0.00 0.00 1.47
2947 3808 6.902771 ATTAGCTCGATCTTGGTATACACT 57.097 37.500 5.01 0.00 0.00 3.55
2961 3968 7.739498 TGGTATACACTTTGGTTTTCTCTTC 57.261 36.000 5.01 0.00 0.00 2.87
2999 4006 1.599542 GCAACTCGCCTACATGATTCC 59.400 52.381 0.00 0.00 32.94 3.01
3034 4041 9.618890 TCATCTTATATTTGAAAGAAGTCCCTG 57.381 33.333 0.00 0.00 35.47 4.45
3035 4042 9.618890 CATCTTATATTTGAAAGAAGTCCCTGA 57.381 33.333 0.00 0.00 35.47 3.86
3036 4043 9.844257 ATCTTATATTTGAAAGAAGTCCCTGAG 57.156 33.333 0.00 0.00 35.47 3.35
3037 4044 8.267894 TCTTATATTTGAAAGAAGTCCCTGAGG 58.732 37.037 0.00 0.00 0.00 3.86
3038 4045 3.508845 TTTGAAAGAAGTCCCTGAGGG 57.491 47.619 12.53 12.53 46.11 4.30
3049 4056 3.331252 CCTGAGGGAGTCCTGGATT 57.669 57.895 9.58 0.00 45.05 3.01
3050 4057 2.478872 CCTGAGGGAGTCCTGGATTA 57.521 55.000 9.58 0.00 45.05 1.75
3051 4058 2.324541 CCTGAGGGAGTCCTGGATTAG 58.675 57.143 9.58 0.00 45.05 1.73
3052 4059 2.324541 CTGAGGGAGTCCTGGATTAGG 58.675 57.143 9.58 0.00 45.05 2.69
3059 4066 4.106725 CCTGGATTAGGGGGCCTT 57.893 61.111 0.84 0.00 43.33 4.35
3060 4067 1.846973 CCTGGATTAGGGGGCCTTC 59.153 63.158 0.84 0.00 43.33 3.46
3061 4068 1.451936 CTGGATTAGGGGGCCTTCG 59.548 63.158 0.84 0.00 34.61 3.79
3062 4069 2.056906 CTGGATTAGGGGGCCTTCGG 62.057 65.000 0.84 0.00 34.61 4.30
3063 4070 1.768888 GGATTAGGGGGCCTTCGGA 60.769 63.158 0.84 0.00 34.61 4.55
3064 4071 1.450642 GATTAGGGGGCCTTCGGAC 59.549 63.158 0.84 0.00 34.61 4.79
3065 4072 1.307517 ATTAGGGGGCCTTCGGACA 60.308 57.895 0.84 0.00 34.61 4.02
3066 4073 1.345715 ATTAGGGGGCCTTCGGACAG 61.346 60.000 0.84 0.00 34.61 3.51
3079 4086 3.969995 GGACAGCCGGACTATCTTC 57.030 57.895 5.05 0.00 0.00 2.87
3080 4087 0.030908 GGACAGCCGGACTATCTTCG 59.969 60.000 5.05 0.00 0.00 3.79
3081 4088 0.739561 GACAGCCGGACTATCTTCGT 59.260 55.000 5.05 0.00 0.00 3.85
3082 4089 1.134560 GACAGCCGGACTATCTTCGTT 59.865 52.381 5.05 0.00 0.00 3.85
3083 4090 1.135083 ACAGCCGGACTATCTTCGTTG 60.135 52.381 5.05 0.00 0.00 4.10
3084 4091 0.460311 AGCCGGACTATCTTCGTTGG 59.540 55.000 5.05 0.00 0.00 3.77
3085 4092 0.175073 GCCGGACTATCTTCGTTGGT 59.825 55.000 5.05 0.00 0.00 3.67
3086 4093 1.801765 GCCGGACTATCTTCGTTGGTC 60.802 57.143 5.05 0.00 0.00 4.02
3087 4094 1.533338 CCGGACTATCTTCGTTGGTCG 60.533 57.143 0.00 0.00 41.41 4.79
3088 4095 1.533338 CGGACTATCTTCGTTGGTCGG 60.533 57.143 0.00 0.00 40.32 4.79
3089 4096 1.747355 GGACTATCTTCGTTGGTCGGA 59.253 52.381 0.00 0.00 40.32 4.55
3090 4097 2.479219 GGACTATCTTCGTTGGTCGGAC 60.479 54.545 0.00 0.00 40.32 4.79
3091 4098 2.422832 GACTATCTTCGTTGGTCGGACT 59.577 50.000 8.23 0.00 40.32 3.85
3092 4099 2.163815 ACTATCTTCGTTGGTCGGACTG 59.836 50.000 8.23 0.00 40.32 3.51
3093 4100 0.966920 ATCTTCGTTGGTCGGACTGT 59.033 50.000 8.23 0.00 40.32 3.55
3094 4101 0.748450 TCTTCGTTGGTCGGACTGTT 59.252 50.000 8.23 0.00 40.32 3.16
3095 4102 1.955778 TCTTCGTTGGTCGGACTGTTA 59.044 47.619 8.23 0.00 40.32 2.41
3096 4103 2.030540 TCTTCGTTGGTCGGACTGTTAG 60.031 50.000 8.23 0.00 40.32 2.34
3097 4104 1.608055 TCGTTGGTCGGACTGTTAGA 58.392 50.000 8.23 0.00 40.32 2.10
3098 4105 1.267806 TCGTTGGTCGGACTGTTAGAC 59.732 52.381 8.23 7.71 40.32 2.59
3104 4111 3.587797 GTCGGACTGTTAGACCATGAA 57.412 47.619 0.00 0.00 30.29 2.57
3105 4112 3.512680 GTCGGACTGTTAGACCATGAAG 58.487 50.000 0.00 0.00 30.29 3.02
3106 4113 3.192844 GTCGGACTGTTAGACCATGAAGA 59.807 47.826 0.00 0.00 30.29 2.87
3107 4114 4.023980 TCGGACTGTTAGACCATGAAGAT 58.976 43.478 0.00 0.00 30.29 2.40
3108 4115 5.067413 GTCGGACTGTTAGACCATGAAGATA 59.933 44.000 0.00 0.00 30.29 1.98
3109 4116 5.067413 TCGGACTGTTAGACCATGAAGATAC 59.933 44.000 0.00 0.00 30.29 2.24
3110 4117 5.163550 CGGACTGTTAGACCATGAAGATACA 60.164 44.000 0.00 0.00 30.29 2.29
3111 4118 6.627287 CGGACTGTTAGACCATGAAGATACAA 60.627 42.308 0.00 0.00 30.29 2.41
3112 4119 6.758886 GGACTGTTAGACCATGAAGATACAAG 59.241 42.308 0.00 0.00 30.29 3.16
3113 4120 7.363880 GGACTGTTAGACCATGAAGATACAAGA 60.364 40.741 0.00 0.00 30.29 3.02
3114 4121 8.083828 ACTGTTAGACCATGAAGATACAAGAT 57.916 34.615 0.00 0.00 0.00 2.40
3115 4122 8.543774 ACTGTTAGACCATGAAGATACAAGATT 58.456 33.333 0.00 0.00 0.00 2.40
3116 4123 8.722480 TGTTAGACCATGAAGATACAAGATTG 57.278 34.615 0.00 0.00 0.00 2.67
3117 4124 8.539544 TGTTAGACCATGAAGATACAAGATTGA 58.460 33.333 0.00 0.00 0.00 2.57
3118 4125 9.383519 GTTAGACCATGAAGATACAAGATTGAA 57.616 33.333 0.00 0.00 0.00 2.69
3119 4126 9.605275 TTAGACCATGAAGATACAAGATTGAAG 57.395 33.333 0.00 0.00 0.00 3.02
3120 4127 7.855375 AGACCATGAAGATACAAGATTGAAGA 58.145 34.615 0.00 0.00 0.00 2.87
3121 4128 7.768120 AGACCATGAAGATACAAGATTGAAGAC 59.232 37.037 0.00 0.00 0.00 3.01
3122 4129 7.628234 ACCATGAAGATACAAGATTGAAGACT 58.372 34.615 0.00 0.00 0.00 3.24
3123 4130 8.105829 ACCATGAAGATACAAGATTGAAGACTT 58.894 33.333 0.00 0.00 0.00 3.01
3124 4131 8.610896 CCATGAAGATACAAGATTGAAGACTTC 58.389 37.037 8.34 8.34 33.47 3.01
3125 4132 7.818493 TGAAGATACAAGATTGAAGACTTCG 57.182 36.000 10.56 0.00 34.37 3.79
3126 4133 7.378966 TGAAGATACAAGATTGAAGACTTCGT 58.621 34.615 10.56 1.87 34.37 3.85
3127 4134 7.542477 TGAAGATACAAGATTGAAGACTTCGTC 59.458 37.037 10.56 10.67 34.37 4.20
3128 4135 7.164230 AGATACAAGATTGAAGACTTCGTCT 57.836 36.000 14.05 14.05 45.64 4.18
3129 4136 7.254852 AGATACAAGATTGAAGACTTCGTCTC 58.745 38.462 18.03 11.38 42.59 3.36
3130 4137 4.230657 ACAAGATTGAAGACTTCGTCTCG 58.769 43.478 18.03 12.49 42.59 4.04
3131 4138 4.230657 CAAGATTGAAGACTTCGTCTCGT 58.769 43.478 18.03 8.11 42.59 4.18
3132 4139 3.827625 AGATTGAAGACTTCGTCTCGTG 58.172 45.455 14.05 0.00 42.59 4.35
3133 4140 3.253677 AGATTGAAGACTTCGTCTCGTGT 59.746 43.478 14.05 0.00 42.59 4.49
3134 4141 3.431922 TTGAAGACTTCGTCTCGTGTT 57.568 42.857 10.56 0.00 42.59 3.32
3135 4142 2.996155 TGAAGACTTCGTCTCGTGTTC 58.004 47.619 10.56 0.00 42.59 3.18
3136 4143 1.970608 GAAGACTTCGTCTCGTGTTCG 59.029 52.381 0.00 0.00 42.59 3.95
3137 4144 0.237761 AGACTTCGTCTCGTGTTCGG 59.762 55.000 0.00 0.00 38.71 4.30
3138 4145 0.236711 GACTTCGTCTCGTGTTCGGA 59.763 55.000 5.44 0.00 37.69 4.55
3139 4146 0.879765 ACTTCGTCTCGTGTTCGGAT 59.120 50.000 5.44 0.00 37.69 4.18
3140 4147 1.260206 CTTCGTCTCGTGTTCGGATG 58.740 55.000 5.44 0.00 37.69 3.51
3141 4148 0.109458 TTCGTCTCGTGTTCGGATGG 60.109 55.000 5.44 0.00 37.69 3.51
3142 4149 1.516386 CGTCTCGTGTTCGGATGGG 60.516 63.158 0.00 0.00 37.69 4.00
3143 4150 1.888018 GTCTCGTGTTCGGATGGGA 59.112 57.895 0.00 0.00 37.69 4.37
3144 4151 0.458025 GTCTCGTGTTCGGATGGGAC 60.458 60.000 0.00 0.00 37.69 4.46
3145 4152 0.611062 TCTCGTGTTCGGATGGGACT 60.611 55.000 0.00 0.00 37.69 3.85
3146 4153 0.179134 CTCGTGTTCGGATGGGACTC 60.179 60.000 0.00 0.00 37.69 3.36
3147 4154 0.611062 TCGTGTTCGGATGGGACTCT 60.611 55.000 0.00 0.00 37.69 3.24
3148 4155 1.100510 CGTGTTCGGATGGGACTCTA 58.899 55.000 0.00 0.00 0.00 2.43
3149 4156 1.202268 CGTGTTCGGATGGGACTCTAC 60.202 57.143 0.00 0.00 0.00 2.59
3150 4157 2.100989 GTGTTCGGATGGGACTCTACT 58.899 52.381 0.00 0.00 0.00 2.57
3151 4158 2.496470 GTGTTCGGATGGGACTCTACTT 59.504 50.000 0.00 0.00 0.00 2.24
3152 4159 2.496070 TGTTCGGATGGGACTCTACTTG 59.504 50.000 0.00 0.00 0.00 3.16
3153 4160 1.776662 TCGGATGGGACTCTACTTGG 58.223 55.000 0.00 0.00 0.00 3.61
3154 4161 0.105039 CGGATGGGACTCTACTTGGC 59.895 60.000 0.00 0.00 0.00 4.52
3155 4162 0.105039 GGATGGGACTCTACTTGGCG 59.895 60.000 0.00 0.00 0.00 5.69
3156 4163 0.824759 GATGGGACTCTACTTGGCGT 59.175 55.000 0.00 0.00 0.00 5.68
3157 4164 0.537188 ATGGGACTCTACTTGGCGTG 59.463 55.000 0.00 0.00 0.00 5.34
3158 4165 1.218316 GGGACTCTACTTGGCGTGG 59.782 63.158 0.00 0.00 0.00 4.94
3159 4166 1.255667 GGGACTCTACTTGGCGTGGA 61.256 60.000 0.00 0.00 0.00 4.02
3160 4167 0.606604 GGACTCTACTTGGCGTGGAA 59.393 55.000 0.00 0.00 32.33 3.53
3161 4168 1.404315 GGACTCTACTTGGCGTGGAAG 60.404 57.143 0.00 0.00 32.33 3.46
3162 4169 0.608640 ACTCTACTTGGCGTGGAAGG 59.391 55.000 0.00 0.00 32.33 3.46
3171 4178 4.208632 CGTGGAAGGCAAGCTAGG 57.791 61.111 0.00 0.00 0.00 3.02
3172 4179 1.296715 CGTGGAAGGCAAGCTAGGT 59.703 57.895 0.00 0.00 0.00 3.08
3173 4180 0.535335 CGTGGAAGGCAAGCTAGGTA 59.465 55.000 0.00 0.00 0.00 3.08
3174 4181 1.471676 CGTGGAAGGCAAGCTAGGTAG 60.472 57.143 0.00 0.00 0.00 3.18
3175 4182 1.555533 GTGGAAGGCAAGCTAGGTAGT 59.444 52.381 0.00 0.00 0.00 2.73
3176 4183 2.764572 GTGGAAGGCAAGCTAGGTAGTA 59.235 50.000 0.00 0.00 0.00 1.82
3177 4184 2.764572 TGGAAGGCAAGCTAGGTAGTAC 59.235 50.000 0.00 0.00 0.00 2.73
3178 4185 2.223758 GGAAGGCAAGCTAGGTAGTACG 60.224 54.545 0.00 0.00 0.00 3.67
3179 4186 1.400737 AGGCAAGCTAGGTAGTACGG 58.599 55.000 0.00 0.00 0.00 4.02
3180 4187 1.064166 AGGCAAGCTAGGTAGTACGGA 60.064 52.381 0.00 0.00 0.00 4.69
3181 4188 1.962100 GGCAAGCTAGGTAGTACGGAT 59.038 52.381 0.00 0.00 0.00 4.18
3182 4189 3.152341 GGCAAGCTAGGTAGTACGGATA 58.848 50.000 0.00 0.00 0.00 2.59
3183 4190 3.762823 GGCAAGCTAGGTAGTACGGATAT 59.237 47.826 0.00 0.00 0.00 1.63
3184 4191 4.380655 GGCAAGCTAGGTAGTACGGATATG 60.381 50.000 0.00 0.00 0.00 1.78
3185 4192 4.380655 GCAAGCTAGGTAGTACGGATATGG 60.381 50.000 0.00 0.00 0.00 2.74
3186 4193 4.923516 AGCTAGGTAGTACGGATATGGA 57.076 45.455 0.00 0.00 0.00 3.41
3187 4194 5.453866 AGCTAGGTAGTACGGATATGGAT 57.546 43.478 0.00 0.00 0.00 3.41
3188 4195 6.572182 AGCTAGGTAGTACGGATATGGATA 57.428 41.667 0.00 0.00 0.00 2.59
3189 4196 7.151694 AGCTAGGTAGTACGGATATGGATAT 57.848 40.000 0.00 0.00 0.00 1.63
3190 4197 7.225725 AGCTAGGTAGTACGGATATGGATATC 58.774 42.308 0.00 0.00 38.70 1.63
3191 4198 7.072708 AGCTAGGTAGTACGGATATGGATATCT 59.927 40.741 2.05 0.00 39.24 1.98
3192 4199 7.388500 GCTAGGTAGTACGGATATGGATATCTC 59.612 44.444 2.05 0.00 39.24 2.75
3193 4200 6.603224 AGGTAGTACGGATATGGATATCTCC 58.397 44.000 2.05 0.69 42.45 3.71
3194 4201 6.390461 AGGTAGTACGGATATGGATATCTCCT 59.610 42.308 2.05 0.00 42.59 3.69
3195 4202 6.711645 GGTAGTACGGATATGGATATCTCCTC 59.288 46.154 2.05 0.00 42.59 3.71
3196 4203 5.697067 AGTACGGATATGGATATCTCCTCC 58.303 45.833 2.05 3.83 42.59 4.30
3197 4204 4.890499 ACGGATATGGATATCTCCTCCT 57.110 45.455 2.05 0.00 42.59 3.69
3198 4205 5.213868 ACGGATATGGATATCTCCTCCTT 57.786 43.478 2.05 0.00 42.59 3.36
3199 4206 5.594777 ACGGATATGGATATCTCCTCCTTT 58.405 41.667 2.05 0.00 42.59 3.11
3200 4207 5.423610 ACGGATATGGATATCTCCTCCTTTG 59.576 44.000 2.05 0.00 42.59 2.77
3201 4208 5.423610 CGGATATGGATATCTCCTCCTTTGT 59.576 44.000 2.05 0.00 42.59 2.83
3202 4209 6.607600 CGGATATGGATATCTCCTCCTTTGTA 59.392 42.308 2.05 0.00 42.59 2.41
3203 4210 7.124298 CGGATATGGATATCTCCTCCTTTGTAA 59.876 40.741 2.05 0.00 42.59 2.41
3204 4211 8.261522 GGATATGGATATCTCCTCCTTTGTAAC 58.738 40.741 2.05 0.00 42.59 2.50
3205 4212 5.888982 TGGATATCTCCTCCTTTGTAACC 57.111 43.478 2.05 0.00 42.59 2.85
3206 4213 4.344102 TGGATATCTCCTCCTTTGTAACCG 59.656 45.833 2.05 0.00 42.59 4.44
3207 4214 4.587684 GGATATCTCCTCCTTTGTAACCGA 59.412 45.833 2.05 0.00 38.65 4.69
3208 4215 3.889520 ATCTCCTCCTTTGTAACCGAC 57.110 47.619 0.00 0.00 0.00 4.79
3209 4216 1.897802 TCTCCTCCTTTGTAACCGACC 59.102 52.381 0.00 0.00 0.00 4.79
3210 4217 1.900486 CTCCTCCTTTGTAACCGACCT 59.100 52.381 0.00 0.00 0.00 3.85
3211 4218 2.302157 CTCCTCCTTTGTAACCGACCTT 59.698 50.000 0.00 0.00 0.00 3.50
3212 4219 2.038033 TCCTCCTTTGTAACCGACCTTG 59.962 50.000 0.00 0.00 0.00 3.61
3213 4220 2.224450 CCTCCTTTGTAACCGACCTTGT 60.224 50.000 0.00 0.00 0.00 3.16
3214 4221 2.806244 CTCCTTTGTAACCGACCTTGTG 59.194 50.000 0.00 0.00 0.00 3.33
3215 4222 2.171027 TCCTTTGTAACCGACCTTGTGT 59.829 45.455 0.00 0.00 0.00 3.72
3216 4223 3.387374 TCCTTTGTAACCGACCTTGTGTA 59.613 43.478 0.00 0.00 0.00 2.90
3217 4224 4.128643 CCTTTGTAACCGACCTTGTGTAA 58.871 43.478 0.00 0.00 0.00 2.41
3218 4225 4.024641 CCTTTGTAACCGACCTTGTGTAAC 60.025 45.833 0.00 0.00 37.35 2.50
3219 4226 3.110447 TGTAACCGACCTTGTGTAACC 57.890 47.619 0.00 0.00 34.36 2.85
3220 4227 2.224257 TGTAACCGACCTTGTGTAACCC 60.224 50.000 0.00 0.00 34.36 4.11
3221 4228 1.134228 AACCGACCTTGTGTAACCCT 58.866 50.000 0.00 0.00 34.36 4.34
3222 4229 2.014010 ACCGACCTTGTGTAACCCTA 57.986 50.000 0.00 0.00 34.36 3.53
3223 4230 2.328319 ACCGACCTTGTGTAACCCTAA 58.672 47.619 0.00 0.00 34.36 2.69
3224 4231 2.037641 ACCGACCTTGTGTAACCCTAAC 59.962 50.000 0.00 0.00 34.36 2.34
3225 4232 2.613725 CCGACCTTGTGTAACCCTAACC 60.614 54.545 0.00 0.00 34.36 2.85
3226 4233 2.613725 CGACCTTGTGTAACCCTAACCC 60.614 54.545 0.00 0.00 34.36 4.11
3227 4234 2.641321 GACCTTGTGTAACCCTAACCCT 59.359 50.000 0.00 0.00 34.36 4.34
3228 4235 3.058341 ACCTTGTGTAACCCTAACCCTT 58.942 45.455 0.00 0.00 34.36 3.95
3229 4236 3.464456 ACCTTGTGTAACCCTAACCCTTT 59.536 43.478 0.00 0.00 34.36 3.11
3230 4237 4.077108 CCTTGTGTAACCCTAACCCTTTC 58.923 47.826 0.00 0.00 34.36 2.62
3231 4238 3.793819 TGTGTAACCCTAACCCTTTCC 57.206 47.619 0.00 0.00 34.36 3.13
3232 4239 2.038820 TGTGTAACCCTAACCCTTTCCG 59.961 50.000 0.00 0.00 34.36 4.30
3233 4240 1.629861 TGTAACCCTAACCCTTTCCGG 59.370 52.381 0.00 0.00 0.00 5.14
3234 4241 1.630369 GTAACCCTAACCCTTTCCGGT 59.370 52.381 0.00 0.00 37.93 5.28
3235 4242 0.402887 AACCCTAACCCTTTCCGGTG 59.597 55.000 0.00 0.00 35.83 4.94
3236 4243 0.769386 ACCCTAACCCTTTCCGGTGT 60.769 55.000 0.00 0.00 35.83 4.16
3237 4244 0.035725 CCCTAACCCTTTCCGGTGTC 60.036 60.000 0.00 0.00 35.83 3.67
3238 4245 0.981943 CCTAACCCTTTCCGGTGTCT 59.018 55.000 0.00 0.00 35.83 3.41
3239 4246 2.181975 CCTAACCCTTTCCGGTGTCTA 58.818 52.381 0.00 0.00 35.83 2.59
3240 4247 2.770232 CCTAACCCTTTCCGGTGTCTAT 59.230 50.000 0.00 0.00 35.83 1.98
3241 4248 3.962718 CCTAACCCTTTCCGGTGTCTATA 59.037 47.826 0.00 0.00 35.83 1.31
3242 4249 4.591924 CCTAACCCTTTCCGGTGTCTATAT 59.408 45.833 0.00 0.00 35.83 0.86
3243 4250 5.776716 CCTAACCCTTTCCGGTGTCTATATA 59.223 44.000 0.00 0.00 35.83 0.86
3244 4251 6.268387 CCTAACCCTTTCCGGTGTCTATATAA 59.732 42.308 0.00 0.00 35.83 0.98
3245 4252 6.564557 AACCCTTTCCGGTGTCTATATAAA 57.435 37.500 0.00 0.00 35.83 1.40
3246 4253 5.922053 ACCCTTTCCGGTGTCTATATAAAC 58.078 41.667 0.00 0.00 33.77 2.01
3247 4254 5.163269 ACCCTTTCCGGTGTCTATATAAACC 60.163 44.000 0.00 0.68 33.77 3.27
3282 4289 2.967362 CGTAGGACAACAGCCATAACA 58.033 47.619 0.00 0.00 0.00 2.41
3283 4290 3.531538 CGTAGGACAACAGCCATAACAT 58.468 45.455 0.00 0.00 0.00 2.71
3284 4291 4.689071 CGTAGGACAACAGCCATAACATA 58.311 43.478 0.00 0.00 0.00 2.29
3285 4292 4.506654 CGTAGGACAACAGCCATAACATAC 59.493 45.833 0.00 0.00 0.00 2.39
3286 4293 4.568072 AGGACAACAGCCATAACATACA 57.432 40.909 0.00 0.00 0.00 2.29
3287 4294 4.917385 AGGACAACAGCCATAACATACAA 58.083 39.130 0.00 0.00 0.00 2.41
3288 4295 5.509498 AGGACAACAGCCATAACATACAAT 58.491 37.500 0.00 0.00 0.00 2.71
3289 4296 5.590259 AGGACAACAGCCATAACATACAATC 59.410 40.000 0.00 0.00 0.00 2.67
3290 4297 5.356751 GGACAACAGCCATAACATACAATCA 59.643 40.000 0.00 0.00 0.00 2.57
3291 4298 6.039717 GGACAACAGCCATAACATACAATCAT 59.960 38.462 0.00 0.00 0.00 2.45
3292 4299 7.228507 GGACAACAGCCATAACATACAATCATA 59.771 37.037 0.00 0.00 0.00 2.15
3293 4300 7.930217 ACAACAGCCATAACATACAATCATAC 58.070 34.615 0.00 0.00 0.00 2.39
3294 4301 7.013274 ACAACAGCCATAACATACAATCATACC 59.987 37.037 0.00 0.00 0.00 2.73
3295 4302 6.600388 ACAGCCATAACATACAATCATACCA 58.400 36.000 0.00 0.00 0.00 3.25
3296 4303 7.233632 ACAGCCATAACATACAATCATACCAT 58.766 34.615 0.00 0.00 0.00 3.55
3297 4304 8.382405 ACAGCCATAACATACAATCATACCATA 58.618 33.333 0.00 0.00 0.00 2.74
3298 4305 8.886719 CAGCCATAACATACAATCATACCATAG 58.113 37.037 0.00 0.00 0.00 2.23
3299 4306 8.049117 AGCCATAACATACAATCATACCATAGG 58.951 37.037 0.00 0.00 0.00 2.57
3300 4307 7.201732 GCCATAACATACAATCATACCATAGGC 60.202 40.741 0.00 0.00 0.00 3.93
3301 4308 8.049117 CCATAACATACAATCATACCATAGGCT 58.951 37.037 0.00 0.00 0.00 4.58
3304 4311 6.947464 ACATACAATCATACCATAGGCTACC 58.053 40.000 0.00 0.00 0.00 3.18
3305 4312 6.730977 ACATACAATCATACCATAGGCTACCT 59.269 38.462 0.00 0.00 37.71 3.08
3306 4313 7.237679 ACATACAATCATACCATAGGCTACCTT 59.762 37.037 0.00 0.00 34.61 3.50
3307 4314 6.115448 ACAATCATACCATAGGCTACCTTC 57.885 41.667 0.00 0.00 34.61 3.46
3308 4315 5.846714 ACAATCATACCATAGGCTACCTTCT 59.153 40.000 0.00 0.00 34.61 2.85
3309 4316 7.016914 ACAATCATACCATAGGCTACCTTCTA 58.983 38.462 0.00 0.00 34.61 2.10
3310 4317 7.179338 ACAATCATACCATAGGCTACCTTCTAG 59.821 40.741 0.00 0.00 34.61 2.43
3311 4318 5.580998 TCATACCATAGGCTACCTTCTAGG 58.419 45.833 0.00 0.00 42.49 3.02
3312 4319 3.261818 ACCATAGGCTACCTTCTAGGG 57.738 52.381 0.00 0.00 40.58 3.53
3313 4320 2.523138 ACCATAGGCTACCTTCTAGGGT 59.477 50.000 0.00 0.00 43.27 4.34
3314 4321 3.051264 ACCATAGGCTACCTTCTAGGGTT 60.051 47.826 0.00 0.00 44.98 4.11
3315 4322 3.974642 CCATAGGCTACCTTCTAGGGTTT 59.025 47.826 0.00 0.00 40.58 3.27
3316 4323 5.152934 CCATAGGCTACCTTCTAGGGTTTA 58.847 45.833 0.00 0.00 40.58 2.01
3317 4324 5.246429 CCATAGGCTACCTTCTAGGGTTTAG 59.754 48.000 0.00 0.00 40.58 1.85
3318 4325 4.349564 AGGCTACCTTCTAGGGTTTAGT 57.650 45.455 0.00 0.00 40.58 2.24
3319 4326 4.288398 AGGCTACCTTCTAGGGTTTAGTC 58.712 47.826 0.00 0.00 40.58 2.59
3320 4327 4.016386 AGGCTACCTTCTAGGGTTTAGTCT 60.016 45.833 0.00 0.00 40.58 3.24
3321 4328 4.341806 GGCTACCTTCTAGGGTTTAGTCTC 59.658 50.000 0.00 0.00 40.58 3.36
3322 4329 5.202765 GCTACCTTCTAGGGTTTAGTCTCT 58.797 45.833 0.00 0.00 40.58 3.10
3323 4330 5.300034 GCTACCTTCTAGGGTTTAGTCTCTC 59.700 48.000 0.00 0.00 40.58 3.20
3324 4331 5.539669 ACCTTCTAGGGTTTAGTCTCTCT 57.460 43.478 0.00 0.00 40.58 3.10
3325 4332 6.655376 ACCTTCTAGGGTTTAGTCTCTCTA 57.345 41.667 0.00 0.00 40.58 2.43
3326 4333 7.042106 ACCTTCTAGGGTTTAGTCTCTCTAA 57.958 40.000 0.00 0.00 40.58 2.10
3327 4334 7.654452 ACCTTCTAGGGTTTAGTCTCTCTAAT 58.346 38.462 0.00 0.00 40.58 1.73
3328 4335 7.781219 ACCTTCTAGGGTTTAGTCTCTCTAATC 59.219 40.741 0.00 0.00 40.58 1.75
3329 4336 8.002459 CCTTCTAGGGTTTAGTCTCTCTAATCT 58.998 40.741 0.00 0.00 38.27 2.40
3330 4337 8.983702 TTCTAGGGTTTAGTCTCTCTAATCTC 57.016 38.462 0.00 0.00 38.27 2.75
3331 4338 7.218614 TCTAGGGTTTAGTCTCTCTAATCTCG 58.781 42.308 0.00 0.00 38.27 4.04
3332 4339 5.757988 AGGGTTTAGTCTCTCTAATCTCGT 58.242 41.667 0.00 0.00 38.27 4.18
3333 4340 5.591067 AGGGTTTAGTCTCTCTAATCTCGTG 59.409 44.000 0.00 0.00 38.27 4.35
3334 4341 5.221087 GGGTTTAGTCTCTCTAATCTCGTGG 60.221 48.000 0.00 0.00 38.27 4.94
3335 4342 5.357596 GGTTTAGTCTCTCTAATCTCGTGGT 59.642 44.000 0.00 0.00 38.27 4.16
3336 4343 6.541641 GGTTTAGTCTCTCTAATCTCGTGGTA 59.458 42.308 0.00 0.00 38.27 3.25
3337 4344 7.254863 GGTTTAGTCTCTCTAATCTCGTGGTAG 60.255 44.444 0.00 0.00 38.27 3.18
3338 4345 5.617528 AGTCTCTCTAATCTCGTGGTAGA 57.382 43.478 0.00 0.00 0.00 2.59
3339 4346 6.182507 AGTCTCTCTAATCTCGTGGTAGAT 57.817 41.667 0.00 0.00 37.84 1.98
3340 4347 6.228258 AGTCTCTCTAATCTCGTGGTAGATC 58.772 44.000 0.00 0.00 35.10 2.75
3341 4348 6.042781 AGTCTCTCTAATCTCGTGGTAGATCT 59.957 42.308 0.00 0.00 35.10 2.75
3342 4349 7.233962 AGTCTCTCTAATCTCGTGGTAGATCTA 59.766 40.741 0.00 0.00 35.10 1.98
3343 4350 7.330208 GTCTCTCTAATCTCGTGGTAGATCTAC 59.670 44.444 22.47 22.47 35.10 2.59
3344 4351 7.233962 TCTCTCTAATCTCGTGGTAGATCTACT 59.766 40.741 27.68 11.48 35.10 2.57
3345 4352 7.380536 TCTCTAATCTCGTGGTAGATCTACTC 58.619 42.308 27.68 19.35 35.10 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.368221 CAGGAAATTTGGCTTTGGTGGA 59.632 45.455 0.00 0.00 0.00 4.02
31 32 9.784531 TGATTCATAGAGAAATGGAGGTAAATC 57.215 33.333 0.00 0.00 40.22 2.17
36 37 7.865820 TCTTTGATTCATAGAGAAATGGAGGT 58.134 34.615 3.05 0.00 40.22 3.85
88 89 3.131478 GGCCACATGTACCCACGC 61.131 66.667 0.00 0.00 0.00 5.34
91 92 1.195442 TTCTCGGCCACATGTACCCA 61.195 55.000 2.24 0.00 0.00 4.51
134 135 8.466617 AGTTCTCAGTCAACTAAGAAGTAAGA 57.533 34.615 2.14 0.00 33.27 2.10
135 136 7.535940 CGAGTTCTCAGTCAACTAAGAAGTAAG 59.464 40.741 3.80 0.00 34.77 2.34
137 138 6.709397 TCGAGTTCTCAGTCAACTAAGAAGTA 59.291 38.462 3.80 0.00 34.77 2.24
138 139 5.531659 TCGAGTTCTCAGTCAACTAAGAAGT 59.468 40.000 3.49 3.49 36.77 3.01
142 143 5.764131 AGTTCGAGTTCTCAGTCAACTAAG 58.236 41.667 0.79 0.00 34.10 2.18
154 155 9.586435 AAATTTGAAAAATCAAGTTCGAGTTCT 57.414 25.926 0.00 0.00 30.84 3.01
177 178 8.434661 CAACTCGCAATTAGTTAATTTGCAAAT 58.565 29.630 18.99 18.99 35.44 2.32
180 181 6.673106 TCAACTCGCAATTAGTTAATTTGCA 58.327 32.000 7.53 0.00 35.44 4.08
189 190 7.435068 ACTTGTAAATCAACTCGCAATTAGT 57.565 32.000 0.00 0.00 32.18 2.24
241 243 9.646427 TTTATTATTATTTTGCGGGGAATATGC 57.354 29.630 0.00 0.00 0.00 3.14
292 295 9.826574 TGTTACAGGCTTTTCGATTACTATTAT 57.173 29.630 0.00 0.00 0.00 1.28
293 296 9.656040 TTGTTACAGGCTTTTCGATTACTATTA 57.344 29.630 0.00 0.00 0.00 0.98
298 301 7.073342 AGATTGTTACAGGCTTTTCGATTAC 57.927 36.000 0.00 0.00 0.00 1.89
300 303 7.681939 TTAGATTGTTACAGGCTTTTCGATT 57.318 32.000 0.00 0.00 0.00 3.34
303 306 7.149192 CGTTTTTAGATTGTTACAGGCTTTTCG 60.149 37.037 0.00 0.00 0.00 3.46
305 308 7.434013 CACGTTTTTAGATTGTTACAGGCTTTT 59.566 33.333 0.00 0.00 0.00 2.27
306 309 6.915843 CACGTTTTTAGATTGTTACAGGCTTT 59.084 34.615 0.00 0.00 0.00 3.51
308 311 5.562113 GCACGTTTTTAGATTGTTACAGGCT 60.562 40.000 0.00 0.00 0.00 4.58
309 312 4.615541 GCACGTTTTTAGATTGTTACAGGC 59.384 41.667 0.00 0.00 0.00 4.85
311 314 6.573725 GTGAGCACGTTTTTAGATTGTTACAG 59.426 38.462 0.00 0.00 0.00 2.74
337 340 5.750067 GGATGGACAAATCATTACAACATGC 59.250 40.000 0.00 0.00 0.00 4.06
349 352 8.908786 TTCATAATAGACTGGATGGACAAATC 57.091 34.615 0.00 0.00 0.00 2.17
406 415 5.348451 CGTCAAAATCCCAATGTTGATTTCC 59.652 40.000 7.96 1.69 40.44 3.13
421 430 6.406820 TCGAAATTTGTTTTGCGTCAAAATC 58.593 32.000 16.78 12.32 43.66 2.17
422 431 6.337853 TCGAAATTTGTTTTGCGTCAAAAT 57.662 29.167 16.78 4.47 43.66 1.82
423 432 5.763444 TCGAAATTTGTTTTGCGTCAAAA 57.237 30.435 11.87 11.87 40.41 2.44
427 436 3.241784 TGCTTCGAAATTTGTTTTGCGTC 59.758 39.130 0.00 0.00 0.00 5.19
428 437 3.182967 TGCTTCGAAATTTGTTTTGCGT 58.817 36.364 0.00 0.00 0.00 5.24
429 438 3.832643 TGCTTCGAAATTTGTTTTGCG 57.167 38.095 0.00 0.00 0.00 4.85
430 439 4.270894 GGTTGCTTCGAAATTTGTTTTGC 58.729 39.130 0.00 0.00 0.00 3.68
432 441 4.177783 ACGGTTGCTTCGAAATTTGTTTT 58.822 34.783 0.00 0.00 0.00 2.43
433 442 3.776340 ACGGTTGCTTCGAAATTTGTTT 58.224 36.364 0.00 0.00 0.00 2.83
434 443 3.430333 ACGGTTGCTTCGAAATTTGTT 57.570 38.095 0.00 0.00 0.00 2.83
435 444 4.555348 TTACGGTTGCTTCGAAATTTGT 57.445 36.364 0.00 0.00 0.00 2.83
437 446 5.980715 ACAAATTACGGTTGCTTCGAAATTT 59.019 32.000 0.00 0.00 0.00 1.82
506 519 0.958876 GGGGCGTGGAAAGGTAAGTG 60.959 60.000 0.00 0.00 0.00 3.16
552 565 1.616865 CCTGTCCACGTCTCCAAGTTA 59.383 52.381 0.00 0.00 0.00 2.24
560 573 1.071471 CAAAGGCCTGTCCACGTCT 59.929 57.895 5.69 0.00 37.29 4.18
616 657 1.449601 ACCGCTAGAAACCATGGCG 60.450 57.895 13.04 7.51 44.48 5.69
666 1071 6.425721 TCTTGTCTTGATTAAAACGTGTAGGG 59.574 38.462 0.00 0.00 0.00 3.53
687 1092 1.002366 CGTCGATTTCCAGCCTCTTG 58.998 55.000 0.00 0.00 0.00 3.02
688 1093 0.608640 ACGTCGATTTCCAGCCTCTT 59.391 50.000 0.00 0.00 0.00 2.85
689 1094 0.108615 CACGTCGATTTCCAGCCTCT 60.109 55.000 0.00 0.00 0.00 3.69
998 1434 0.667184 CACGCAAAAGTTCCCCATGC 60.667 55.000 0.00 0.00 0.00 4.06
1217 1655 3.041940 CGCGACGCCTTGGAGTTT 61.042 61.111 15.34 0.00 0.00 2.66
1412 1865 0.750850 CGTCGATCCACCCCTTGTAT 59.249 55.000 0.00 0.00 0.00 2.29
1583 2047 3.075005 TCGGAGCAGTAGCCCACC 61.075 66.667 0.00 0.00 43.56 4.61
1586 2050 4.874977 GCGTCGGAGCAGTAGCCC 62.875 72.222 0.00 0.00 43.56 5.19
2273 2887 0.525668 GCGATCTGGATGACGTCGTT 60.526 55.000 12.40 0.37 34.97 3.85
2411 3044 8.306038 TGTCCAATTTCCAATCTACAAATTCTG 58.694 33.333 0.00 0.00 29.17 3.02
2440 3082 2.996621 CGGCTGAAACGAGAGAGAAAAT 59.003 45.455 0.00 0.00 0.00 1.82
2481 3123 7.982354 GCAATCCGGAGCTACTTCTATAATAAT 59.018 37.037 11.34 0.00 0.00 1.28
2482 3124 7.039293 TGCAATCCGGAGCTACTTCTATAATAA 60.039 37.037 11.34 0.00 0.00 1.40
2518 3239 1.067060 TCAATGGATAGTCGCCGTCAG 59.933 52.381 0.00 0.00 0.00 3.51
2550 3295 8.201852 TGTAAACGTTGATAAAAATACGCAAC 57.798 30.769 0.00 0.00 37.51 4.17
2588 3349 0.690762 GGGGCTAGGAAGTGTTCACA 59.309 55.000 5.74 0.00 0.00 3.58
2667 3432 7.254084 GCACCACAAGATGAACTTTTTGTTTAG 60.254 37.037 0.00 0.00 39.30 1.85
2702 3467 0.034896 AAACGAACGGCAGTCCAGAT 59.965 50.000 0.00 0.00 0.00 2.90
2769 3538 2.097038 GTCAGCATCTTCAGCGCGT 61.097 57.895 8.43 0.00 37.01 6.01
2772 3541 0.671472 TGTGGTCAGCATCTTCAGCG 60.671 55.000 0.00 0.00 37.01 5.18
2800 3575 3.976169 AGCGATCTTAGAGATTGAGCAC 58.024 45.455 8.94 0.00 38.18 4.40
2833 3625 1.340248 GTTAATGGCGAGGGAGATCGA 59.660 52.381 0.00 0.00 45.56 3.59
2851 3643 3.149196 CAACCATACCAGTCAGCTTGTT 58.851 45.455 0.00 0.00 0.00 2.83
2854 3646 2.639839 AGACAACCATACCAGTCAGCTT 59.360 45.455 0.00 0.00 33.56 3.74
2855 3647 2.260822 AGACAACCATACCAGTCAGCT 58.739 47.619 0.00 0.00 33.56 4.24
2856 3648 2.744202 CAAGACAACCATACCAGTCAGC 59.256 50.000 0.00 0.00 33.56 4.26
2858 3650 2.708861 ACCAAGACAACCATACCAGTCA 59.291 45.455 0.00 0.00 33.56 3.41
2859 3651 3.335579 GACCAAGACAACCATACCAGTC 58.664 50.000 0.00 0.00 0.00 3.51
2860 3652 2.039879 GGACCAAGACAACCATACCAGT 59.960 50.000 0.00 0.00 0.00 4.00
2861 3653 2.039746 TGGACCAAGACAACCATACCAG 59.960 50.000 0.00 0.00 0.00 4.00
2862 3654 2.058705 TGGACCAAGACAACCATACCA 58.941 47.619 0.00 0.00 0.00 3.25
2863 3655 2.871096 TGGACCAAGACAACCATACC 57.129 50.000 0.00 0.00 0.00 2.73
2864 3656 3.941483 CAGATGGACCAAGACAACCATAC 59.059 47.826 0.00 0.00 42.23 2.39
2865 3657 3.054434 CCAGATGGACCAAGACAACCATA 60.054 47.826 0.00 0.00 42.23 2.74
2866 3658 2.291153 CCAGATGGACCAAGACAACCAT 60.291 50.000 0.00 0.00 44.40 3.55
2867 3659 1.073763 CCAGATGGACCAAGACAACCA 59.926 52.381 0.00 0.00 37.39 3.67
2868 3660 1.351017 TCCAGATGGACCAAGACAACC 59.649 52.381 0.00 0.00 39.78 3.77
2869 3661 2.859165 TCCAGATGGACCAAGACAAC 57.141 50.000 0.00 0.00 39.78 3.32
2870 3662 3.394274 TCTTTCCAGATGGACCAAGACAA 59.606 43.478 10.60 0.00 45.39 3.18
2871 3663 2.978978 TCTTTCCAGATGGACCAAGACA 59.021 45.455 10.60 0.00 45.39 3.41
2872 3664 3.703001 TCTTTCCAGATGGACCAAGAC 57.297 47.619 10.60 0.00 45.39 3.01
2873 3665 3.394274 TGTTCTTTCCAGATGGACCAAGA 59.606 43.478 10.60 10.60 45.39 3.02
2898 3758 5.043189 ACCTATTCTTAAACACTTTGCGC 57.957 39.130 0.00 0.00 0.00 6.09
2911 3772 7.731054 AGATCGAGCTAATTGAACCTATTCTT 58.269 34.615 0.00 0.00 35.69 2.52
2925 3786 6.710597 AAGTGTATACCAAGATCGAGCTAA 57.289 37.500 2.34 0.00 0.00 3.09
2932 3793 8.336801 AGAAAACCAAAGTGTATACCAAGATC 57.663 34.615 0.00 0.00 0.00 2.75
2933 3794 8.164070 AGAGAAAACCAAAGTGTATACCAAGAT 58.836 33.333 0.00 0.00 0.00 2.40
2939 3800 9.274206 AGAAGAAGAGAAAACCAAAGTGTATAC 57.726 33.333 0.00 0.00 0.00 1.47
2944 3805 6.442513 ACAGAAGAAGAGAAAACCAAAGTG 57.557 37.500 0.00 0.00 0.00 3.16
2947 3808 8.746052 TCATAACAGAAGAAGAGAAAACCAAA 57.254 30.769 0.00 0.00 0.00 3.28
2961 3968 6.432607 AGTTGCATGTGATCATAACAGAAG 57.567 37.500 0.00 0.00 32.47 2.85
3042 4049 1.846973 GAAGGCCCCCTAATCCAGG 59.153 63.158 0.00 0.00 45.07 4.45
3043 4050 1.451936 CGAAGGCCCCCTAATCCAG 59.548 63.158 0.00 0.00 31.13 3.86
3044 4051 2.076184 CCGAAGGCCCCCTAATCCA 61.076 63.158 0.00 0.00 46.14 3.41
3045 4052 2.836888 CCGAAGGCCCCCTAATCC 59.163 66.667 0.00 0.00 46.14 3.01
3061 4068 0.030908 CGAAGATAGTCCGGCTGTCC 59.969 60.000 15.44 4.73 36.16 4.02
3062 4069 0.739561 ACGAAGATAGTCCGGCTGTC 59.260 55.000 12.51 12.51 35.82 3.51
3063 4070 1.135083 CAACGAAGATAGTCCGGCTGT 60.135 52.381 0.00 0.00 0.00 4.40
3064 4071 1.560923 CAACGAAGATAGTCCGGCTG 58.439 55.000 0.00 0.00 0.00 4.85
3065 4072 0.460311 CCAACGAAGATAGTCCGGCT 59.540 55.000 0.00 0.00 0.00 5.52
3066 4073 0.175073 ACCAACGAAGATAGTCCGGC 59.825 55.000 0.00 0.00 0.00 6.13
3067 4074 1.533338 CGACCAACGAAGATAGTCCGG 60.533 57.143 0.00 0.00 45.77 5.14
3068 4075 1.533338 CCGACCAACGAAGATAGTCCG 60.533 57.143 0.00 0.00 45.77 4.79
3069 4076 1.747355 TCCGACCAACGAAGATAGTCC 59.253 52.381 0.00 0.00 45.77 3.85
3070 4077 2.422832 AGTCCGACCAACGAAGATAGTC 59.577 50.000 0.00 0.00 45.77 2.59
3071 4078 2.163815 CAGTCCGACCAACGAAGATAGT 59.836 50.000 0.00 0.00 45.77 2.12
3072 4079 2.163815 ACAGTCCGACCAACGAAGATAG 59.836 50.000 0.00 0.00 45.77 2.08
3073 4080 2.165167 ACAGTCCGACCAACGAAGATA 58.835 47.619 0.00 0.00 45.77 1.98
3074 4081 0.966920 ACAGTCCGACCAACGAAGAT 59.033 50.000 0.00 0.00 45.77 2.40
3075 4082 0.748450 AACAGTCCGACCAACGAAGA 59.252 50.000 0.00 0.00 45.77 2.87
3076 4083 2.030540 TCTAACAGTCCGACCAACGAAG 60.031 50.000 0.00 0.00 45.77 3.79
3077 4084 1.955778 TCTAACAGTCCGACCAACGAA 59.044 47.619 0.00 0.00 45.77 3.85
3078 4085 1.267806 GTCTAACAGTCCGACCAACGA 59.732 52.381 0.00 0.00 45.77 3.85
3079 4086 1.668047 GGTCTAACAGTCCGACCAACG 60.668 57.143 13.73 0.00 45.08 4.10
3080 4087 2.075979 GGTCTAACAGTCCGACCAAC 57.924 55.000 13.73 0.00 45.08 3.77
3083 4090 1.822990 TCATGGTCTAACAGTCCGACC 59.177 52.381 12.31 12.31 45.76 4.79
3084 4091 3.192844 TCTTCATGGTCTAACAGTCCGAC 59.807 47.826 0.00 0.00 0.00 4.79
3085 4092 3.427573 TCTTCATGGTCTAACAGTCCGA 58.572 45.455 0.00 0.00 0.00 4.55
3086 4093 3.868757 TCTTCATGGTCTAACAGTCCG 57.131 47.619 0.00 0.00 0.00 4.79
3087 4094 6.222038 TGTATCTTCATGGTCTAACAGTCC 57.778 41.667 0.00 0.00 0.00 3.85
3088 4095 7.548097 TCTTGTATCTTCATGGTCTAACAGTC 58.452 38.462 0.00 0.00 0.00 3.51
3089 4096 7.482169 TCTTGTATCTTCATGGTCTAACAGT 57.518 36.000 0.00 0.00 0.00 3.55
3090 4097 8.824781 CAATCTTGTATCTTCATGGTCTAACAG 58.175 37.037 0.00 0.00 0.00 3.16
3091 4098 8.539544 TCAATCTTGTATCTTCATGGTCTAACA 58.460 33.333 0.00 0.00 0.00 2.41
3092 4099 8.948631 TCAATCTTGTATCTTCATGGTCTAAC 57.051 34.615 0.00 0.00 0.00 2.34
3093 4100 9.605275 CTTCAATCTTGTATCTTCATGGTCTAA 57.395 33.333 0.00 0.00 0.00 2.10
3094 4101 8.981659 TCTTCAATCTTGTATCTTCATGGTCTA 58.018 33.333 0.00 0.00 0.00 2.59
3095 4102 7.768120 GTCTTCAATCTTGTATCTTCATGGTCT 59.232 37.037 0.00 0.00 0.00 3.85
3096 4103 7.768120 AGTCTTCAATCTTGTATCTTCATGGTC 59.232 37.037 0.00 0.00 0.00 4.02
3097 4104 7.628234 AGTCTTCAATCTTGTATCTTCATGGT 58.372 34.615 0.00 0.00 0.00 3.55
3098 4105 8.503458 AAGTCTTCAATCTTGTATCTTCATGG 57.497 34.615 0.00 0.00 0.00 3.66
3099 4106 8.326713 CGAAGTCTTCAATCTTGTATCTTCATG 58.673 37.037 12.99 0.00 32.10 3.07
3100 4107 8.037758 ACGAAGTCTTCAATCTTGTATCTTCAT 58.962 33.333 12.99 0.00 29.74 2.57
3101 4108 7.378966 ACGAAGTCTTCAATCTTGTATCTTCA 58.621 34.615 12.99 0.00 29.74 3.02
3102 4109 7.820044 ACGAAGTCTTCAATCTTGTATCTTC 57.180 36.000 12.99 0.00 29.74 2.87
3121 4128 1.260206 CATCCGAACACGAGACGAAG 58.740 55.000 0.00 0.00 0.00 3.79
3122 4129 0.109458 CCATCCGAACACGAGACGAA 60.109 55.000 0.00 0.00 0.00 3.85
3123 4130 1.504900 CCATCCGAACACGAGACGA 59.495 57.895 0.00 0.00 0.00 4.20
3124 4131 1.516386 CCCATCCGAACACGAGACG 60.516 63.158 0.00 0.00 0.00 4.18
3125 4132 0.458025 GTCCCATCCGAACACGAGAC 60.458 60.000 0.00 0.00 0.00 3.36
3126 4133 0.611062 AGTCCCATCCGAACACGAGA 60.611 55.000 0.00 0.00 0.00 4.04
3127 4134 0.179134 GAGTCCCATCCGAACACGAG 60.179 60.000 0.00 0.00 0.00 4.18
3128 4135 0.611062 AGAGTCCCATCCGAACACGA 60.611 55.000 0.00 0.00 0.00 4.35
3129 4136 1.100510 TAGAGTCCCATCCGAACACG 58.899 55.000 0.00 0.00 0.00 4.49
3130 4137 2.100989 AGTAGAGTCCCATCCGAACAC 58.899 52.381 0.00 0.00 0.00 3.32
3131 4138 2.496070 CAAGTAGAGTCCCATCCGAACA 59.504 50.000 0.00 0.00 0.00 3.18
3132 4139 2.159085 CCAAGTAGAGTCCCATCCGAAC 60.159 54.545 0.00 0.00 0.00 3.95
3133 4140 2.108168 CCAAGTAGAGTCCCATCCGAA 58.892 52.381 0.00 0.00 0.00 4.30
3134 4141 1.776662 CCAAGTAGAGTCCCATCCGA 58.223 55.000 0.00 0.00 0.00 4.55
3135 4142 0.105039 GCCAAGTAGAGTCCCATCCG 59.895 60.000 0.00 0.00 0.00 4.18
3136 4143 0.105039 CGCCAAGTAGAGTCCCATCC 59.895 60.000 0.00 0.00 0.00 3.51
3137 4144 0.824759 ACGCCAAGTAGAGTCCCATC 59.175 55.000 0.00 0.00 0.00 3.51
3138 4145 0.537188 CACGCCAAGTAGAGTCCCAT 59.463 55.000 0.00 0.00 0.00 4.00
3139 4146 1.541310 CCACGCCAAGTAGAGTCCCA 61.541 60.000 0.00 0.00 0.00 4.37
3140 4147 1.218316 CCACGCCAAGTAGAGTCCC 59.782 63.158 0.00 0.00 0.00 4.46
3141 4148 0.606604 TTCCACGCCAAGTAGAGTCC 59.393 55.000 0.00 0.00 0.00 3.85
3142 4149 1.404315 CCTTCCACGCCAAGTAGAGTC 60.404 57.143 0.00 0.00 0.00 3.36
3143 4150 0.608640 CCTTCCACGCCAAGTAGAGT 59.391 55.000 0.00 0.00 0.00 3.24
3144 4151 0.741221 GCCTTCCACGCCAAGTAGAG 60.741 60.000 0.00 0.00 0.00 2.43
3145 4152 1.295423 GCCTTCCACGCCAAGTAGA 59.705 57.895 0.00 0.00 0.00 2.59
3146 4153 0.605319 TTGCCTTCCACGCCAAGTAG 60.605 55.000 0.00 0.00 0.00 2.57
3147 4154 0.605319 CTTGCCTTCCACGCCAAGTA 60.605 55.000 0.00 0.00 0.00 2.24
3148 4155 1.898574 CTTGCCTTCCACGCCAAGT 60.899 57.895 0.00 0.00 0.00 3.16
3149 4156 2.956987 CTTGCCTTCCACGCCAAG 59.043 61.111 0.00 0.00 0.00 3.61
3150 4157 2.404566 TAGCTTGCCTTCCACGCCAA 62.405 55.000 0.00 0.00 39.36 4.52
3151 4158 2.803155 CTAGCTTGCCTTCCACGCCA 62.803 60.000 0.00 0.00 39.36 5.69
3152 4159 2.046314 TAGCTTGCCTTCCACGCC 60.046 61.111 0.00 0.00 39.36 5.68
3153 4160 2.109126 CCTAGCTTGCCTTCCACGC 61.109 63.158 0.00 0.00 38.87 5.34
3154 4161 0.535335 TACCTAGCTTGCCTTCCACG 59.465 55.000 0.00 0.00 0.00 4.94
3155 4162 1.555533 ACTACCTAGCTTGCCTTCCAC 59.444 52.381 0.00 0.00 0.00 4.02
3156 4163 1.952621 ACTACCTAGCTTGCCTTCCA 58.047 50.000 0.00 0.00 0.00 3.53
3157 4164 2.223758 CGTACTACCTAGCTTGCCTTCC 60.224 54.545 0.00 0.00 0.00 3.46
3158 4165 2.223758 CCGTACTACCTAGCTTGCCTTC 60.224 54.545 0.00 0.00 0.00 3.46
3159 4166 1.755380 CCGTACTACCTAGCTTGCCTT 59.245 52.381 0.00 0.00 0.00 4.35
3160 4167 1.064166 TCCGTACTACCTAGCTTGCCT 60.064 52.381 0.00 0.00 0.00 4.75
3161 4168 1.396653 TCCGTACTACCTAGCTTGCC 58.603 55.000 0.00 0.00 0.00 4.52
3162 4169 4.380655 CCATATCCGTACTACCTAGCTTGC 60.381 50.000 0.00 0.00 0.00 4.01
3163 4170 5.008331 TCCATATCCGTACTACCTAGCTTG 58.992 45.833 0.00 0.00 0.00 4.01
3164 4171 5.252586 TCCATATCCGTACTACCTAGCTT 57.747 43.478 0.00 0.00 0.00 3.74
3165 4172 4.923516 TCCATATCCGTACTACCTAGCT 57.076 45.455 0.00 0.00 0.00 3.32
3166 4173 7.225725 AGATATCCATATCCGTACTACCTAGC 58.774 42.308 0.00 0.00 39.94 3.42
3167 4174 7.879160 GGAGATATCCATATCCGTACTACCTAG 59.121 44.444 0.18 0.00 39.94 3.02
3168 4175 7.571732 AGGAGATATCCATATCCGTACTACCTA 59.428 40.741 9.50 0.00 45.63 3.08
3169 4176 6.390461 AGGAGATATCCATATCCGTACTACCT 59.610 42.308 9.50 0.00 45.63 3.08
3170 4177 6.603224 AGGAGATATCCATATCCGTACTACC 58.397 44.000 9.50 0.00 45.63 3.18
3171 4178 6.711645 GGAGGAGATATCCATATCCGTACTAC 59.288 46.154 9.50 0.00 45.63 2.73
3172 4179 6.620267 AGGAGGAGATATCCATATCCGTACTA 59.380 42.308 9.50 0.00 45.63 1.82
3173 4180 5.433712 AGGAGGAGATATCCATATCCGTACT 59.566 44.000 9.50 0.00 45.63 2.73
3174 4181 5.697067 AGGAGGAGATATCCATATCCGTAC 58.303 45.833 9.50 0.00 45.63 3.67
3175 4182 5.996271 AGGAGGAGATATCCATATCCGTA 57.004 43.478 9.50 0.00 45.63 4.02
3176 4183 4.890499 AGGAGGAGATATCCATATCCGT 57.110 45.455 9.50 0.00 45.63 4.69
3177 4184 5.423610 ACAAAGGAGGAGATATCCATATCCG 59.576 44.000 9.50 0.00 45.63 4.18
3178 4185 6.882768 ACAAAGGAGGAGATATCCATATCC 57.117 41.667 9.50 7.09 42.04 2.59
3179 4186 8.261522 GGTTACAAAGGAGGAGATATCCATATC 58.738 40.741 9.50 0.00 39.47 1.63
3180 4187 7.093289 CGGTTACAAAGGAGGAGATATCCATAT 60.093 40.741 9.50 0.00 39.47 1.78
3181 4188 6.210784 CGGTTACAAAGGAGGAGATATCCATA 59.789 42.308 9.50 0.00 39.47 2.74
3182 4189 5.012148 CGGTTACAAAGGAGGAGATATCCAT 59.988 44.000 9.50 0.00 39.47 3.41
3183 4190 4.344102 CGGTTACAAAGGAGGAGATATCCA 59.656 45.833 9.50 0.00 39.47 3.41
3184 4191 4.587684 TCGGTTACAAAGGAGGAGATATCC 59.412 45.833 0.00 0.00 37.07 2.59
3185 4192 5.509332 GGTCGGTTACAAAGGAGGAGATATC 60.509 48.000 0.00 0.00 0.00 1.63
3186 4193 4.344390 GGTCGGTTACAAAGGAGGAGATAT 59.656 45.833 0.00 0.00 0.00 1.63
3187 4194 3.703052 GGTCGGTTACAAAGGAGGAGATA 59.297 47.826 0.00 0.00 0.00 1.98
3188 4195 2.500504 GGTCGGTTACAAAGGAGGAGAT 59.499 50.000 0.00 0.00 0.00 2.75
3189 4196 1.897802 GGTCGGTTACAAAGGAGGAGA 59.102 52.381 0.00 0.00 0.00 3.71
3190 4197 1.900486 AGGTCGGTTACAAAGGAGGAG 59.100 52.381 0.00 0.00 0.00 3.69
3191 4198 2.019807 AGGTCGGTTACAAAGGAGGA 57.980 50.000 0.00 0.00 0.00 3.71
3192 4199 2.224450 ACAAGGTCGGTTACAAAGGAGG 60.224 50.000 0.00 0.00 0.00 4.30
3193 4200 2.806244 CACAAGGTCGGTTACAAAGGAG 59.194 50.000 0.00 0.00 0.00 3.69
3194 4201 2.171027 ACACAAGGTCGGTTACAAAGGA 59.829 45.455 0.00 0.00 0.00 3.36
3195 4202 2.567985 ACACAAGGTCGGTTACAAAGG 58.432 47.619 0.00 0.00 0.00 3.11
3196 4203 4.024641 GGTTACACAAGGTCGGTTACAAAG 60.025 45.833 0.00 0.00 0.00 2.77
3197 4204 3.876320 GGTTACACAAGGTCGGTTACAAA 59.124 43.478 0.00 0.00 0.00 2.83
3198 4205 3.465871 GGTTACACAAGGTCGGTTACAA 58.534 45.455 0.00 0.00 0.00 2.41
3199 4206 2.224257 GGGTTACACAAGGTCGGTTACA 60.224 50.000 0.00 0.00 0.00 2.41
3200 4207 2.037641 AGGGTTACACAAGGTCGGTTAC 59.962 50.000 0.00 0.00 0.00 2.50
3201 4208 2.328319 AGGGTTACACAAGGTCGGTTA 58.672 47.619 0.00 0.00 0.00 2.85
3202 4209 1.134228 AGGGTTACACAAGGTCGGTT 58.866 50.000 0.00 0.00 0.00 4.44
3203 4210 2.014010 TAGGGTTACACAAGGTCGGT 57.986 50.000 0.00 0.00 0.00 4.69
3204 4211 2.613725 GGTTAGGGTTACACAAGGTCGG 60.614 54.545 0.00 0.00 0.00 4.79
3205 4212 2.613725 GGGTTAGGGTTACACAAGGTCG 60.614 54.545 0.00 0.00 0.00 4.79
3206 4213 2.641321 AGGGTTAGGGTTACACAAGGTC 59.359 50.000 0.00 0.00 0.00 3.85
3207 4214 2.709966 AGGGTTAGGGTTACACAAGGT 58.290 47.619 0.00 0.00 0.00 3.50
3208 4215 3.801307 AAGGGTTAGGGTTACACAAGG 57.199 47.619 0.00 0.00 0.00 3.61
3209 4216 4.077108 GGAAAGGGTTAGGGTTACACAAG 58.923 47.826 0.00 0.00 0.00 3.16
3210 4217 3.496515 CGGAAAGGGTTAGGGTTACACAA 60.497 47.826 0.00 0.00 0.00 3.33
3211 4218 2.038820 CGGAAAGGGTTAGGGTTACACA 59.961 50.000 0.00 0.00 0.00 3.72
3212 4219 2.616256 CCGGAAAGGGTTAGGGTTACAC 60.616 54.545 0.00 0.00 35.97 2.90
3213 4220 1.629861 CCGGAAAGGGTTAGGGTTACA 59.370 52.381 0.00 0.00 35.97 2.41
3214 4221 1.630369 ACCGGAAAGGGTTAGGGTTAC 59.370 52.381 9.46 0.00 46.96 2.50
3215 4222 1.629861 CACCGGAAAGGGTTAGGGTTA 59.370 52.381 9.46 0.00 46.96 2.85
3216 4223 0.402887 CACCGGAAAGGGTTAGGGTT 59.597 55.000 9.46 0.00 46.96 4.11
3217 4224 0.769386 ACACCGGAAAGGGTTAGGGT 60.769 55.000 9.46 0.00 46.96 4.34
3218 4225 0.035725 GACACCGGAAAGGGTTAGGG 60.036 60.000 9.46 0.00 46.96 3.53
3219 4226 0.981943 AGACACCGGAAAGGGTTAGG 59.018 55.000 9.46 0.00 46.96 2.69
3220 4227 5.803237 ATATAGACACCGGAAAGGGTTAG 57.197 43.478 9.46 0.00 46.96 2.34
3221 4228 7.418942 GGTTTATATAGACACCGGAAAGGGTTA 60.419 40.741 9.46 0.00 46.96 2.85
3222 4229 6.351711 GTTTATATAGACACCGGAAAGGGTT 58.648 40.000 9.46 0.00 46.96 4.11
3223 4230 5.163269 GGTTTATATAGACACCGGAAAGGGT 60.163 44.000 9.46 0.00 46.96 4.34
3224 4231 5.303165 GGTTTATATAGACACCGGAAAGGG 58.697 45.833 9.46 0.00 46.96 3.95
3225 4232 4.986659 CGGTTTATATAGACACCGGAAAGG 59.013 45.833 15.65 0.00 46.92 3.11
3232 4239 5.541953 ACCCTTCGGTTTATATAGACACC 57.458 43.478 5.83 2.59 40.58 4.16
3246 4253 2.417787 CCTACGGACTAAAACCCTTCGG 60.418 54.545 0.00 0.00 0.00 4.30
3247 4254 2.493278 TCCTACGGACTAAAACCCTTCG 59.507 50.000 0.00 0.00 0.00 3.79
3260 4267 1.855295 TATGGCTGTTGTCCTACGGA 58.145 50.000 0.00 0.00 0.00 4.69
3261 4268 2.277084 GTTATGGCTGTTGTCCTACGG 58.723 52.381 0.00 0.00 0.00 4.02
3262 4269 2.967362 TGTTATGGCTGTTGTCCTACG 58.033 47.619 0.00 0.00 0.00 3.51
3263 4270 5.424757 TGTATGTTATGGCTGTTGTCCTAC 58.575 41.667 0.00 0.00 0.00 3.18
3264 4271 5.685520 TGTATGTTATGGCTGTTGTCCTA 57.314 39.130 0.00 0.00 0.00 2.94
3265 4272 4.568072 TGTATGTTATGGCTGTTGTCCT 57.432 40.909 0.00 0.00 0.00 3.85
3266 4273 5.356751 TGATTGTATGTTATGGCTGTTGTCC 59.643 40.000 0.00 0.00 0.00 4.02
3267 4274 6.435430 TGATTGTATGTTATGGCTGTTGTC 57.565 37.500 0.00 0.00 0.00 3.18
3268 4275 7.013274 GGTATGATTGTATGTTATGGCTGTTGT 59.987 37.037 0.00 0.00 0.00 3.32
3269 4276 7.013178 TGGTATGATTGTATGTTATGGCTGTTG 59.987 37.037 0.00 0.00 0.00 3.33
3270 4277 7.059788 TGGTATGATTGTATGTTATGGCTGTT 58.940 34.615 0.00 0.00 0.00 3.16
3271 4278 6.600388 TGGTATGATTGTATGTTATGGCTGT 58.400 36.000 0.00 0.00 0.00 4.40
3272 4279 7.692460 ATGGTATGATTGTATGTTATGGCTG 57.308 36.000 0.00 0.00 0.00 4.85
3273 4280 8.049117 CCTATGGTATGATTGTATGTTATGGCT 58.951 37.037 0.00 0.00 0.00 4.75
3274 4281 7.201732 GCCTATGGTATGATTGTATGTTATGGC 60.202 40.741 0.00 0.00 0.00 4.40
3275 4282 8.049117 AGCCTATGGTATGATTGTATGTTATGG 58.951 37.037 0.00 0.00 0.00 2.74
3278 4285 8.537016 GGTAGCCTATGGTATGATTGTATGTTA 58.463 37.037 0.00 0.00 0.00 2.41
3279 4286 7.237679 AGGTAGCCTATGGTATGATTGTATGTT 59.762 37.037 0.00 0.00 28.47 2.71
3280 4287 6.730977 AGGTAGCCTATGGTATGATTGTATGT 59.269 38.462 0.00 0.00 28.47 2.29
3281 4288 7.187824 AGGTAGCCTATGGTATGATTGTATG 57.812 40.000 0.00 0.00 28.47 2.39
3282 4289 7.680310 AGAAGGTAGCCTATGGTATGATTGTAT 59.320 37.037 0.00 0.00 31.13 2.29
3283 4290 7.016914 AGAAGGTAGCCTATGGTATGATTGTA 58.983 38.462 0.00 0.00 31.13 2.41
3284 4291 5.846714 AGAAGGTAGCCTATGGTATGATTGT 59.153 40.000 0.00 0.00 31.13 2.71
3285 4292 6.365970 AGAAGGTAGCCTATGGTATGATTG 57.634 41.667 0.00 0.00 31.13 2.67
3286 4293 6.670027 CCTAGAAGGTAGCCTATGGTATGATT 59.330 42.308 0.00 0.00 31.13 2.57
3287 4294 6.198639 CCTAGAAGGTAGCCTATGGTATGAT 58.801 44.000 0.00 0.00 31.13 2.45
3288 4295 5.518546 CCCTAGAAGGTAGCCTATGGTATGA 60.519 48.000 0.00 0.00 31.93 2.15
3289 4296 4.712337 CCCTAGAAGGTAGCCTATGGTATG 59.288 50.000 0.00 0.00 31.93 2.39
3290 4297 4.360446 ACCCTAGAAGGTAGCCTATGGTAT 59.640 45.833 0.00 0.00 38.79 2.73
3291 4298 3.731130 ACCCTAGAAGGTAGCCTATGGTA 59.269 47.826 0.00 0.00 38.79 3.25
3292 4299 2.523138 ACCCTAGAAGGTAGCCTATGGT 59.477 50.000 0.00 0.00 38.79 3.55
3293 4300 3.261818 ACCCTAGAAGGTAGCCTATGG 57.738 52.381 0.00 0.00 38.79 2.74
3294 4301 5.839606 ACTAAACCCTAGAAGGTAGCCTATG 59.160 44.000 0.00 0.00 40.05 2.23
3295 4302 6.040662 ACTAAACCCTAGAAGGTAGCCTAT 57.959 41.667 0.00 0.00 40.05 2.57
3296 4303 5.195349 AGACTAAACCCTAGAAGGTAGCCTA 59.805 44.000 0.00 0.00 40.05 3.93
3297 4304 4.016386 AGACTAAACCCTAGAAGGTAGCCT 60.016 45.833 0.00 0.00 40.05 4.58
3298 4305 4.288398 AGACTAAACCCTAGAAGGTAGCC 58.712 47.826 0.00 0.00 40.05 3.93
3299 4306 5.202765 AGAGACTAAACCCTAGAAGGTAGC 58.797 45.833 0.00 0.00 40.05 3.58
3300 4307 6.665695 AGAGAGACTAAACCCTAGAAGGTAG 58.334 44.000 0.00 0.00 40.05 3.18
3301 4308 6.655376 AGAGAGACTAAACCCTAGAAGGTA 57.345 41.667 0.00 0.00 40.05 3.08
3302 4309 5.539669 AGAGAGACTAAACCCTAGAAGGT 57.460 43.478 0.00 0.00 44.00 3.50
3303 4310 8.002459 AGATTAGAGAGACTAAACCCTAGAAGG 58.998 40.741 0.00 0.00 43.15 3.46
3304 4311 8.990163 AGATTAGAGAGACTAAACCCTAGAAG 57.010 38.462 0.00 0.00 43.15 2.85
3305 4312 7.716123 CGAGATTAGAGAGACTAAACCCTAGAA 59.284 40.741 0.00 0.00 43.15 2.10
3306 4313 7.147514 ACGAGATTAGAGAGACTAAACCCTAGA 60.148 40.741 0.00 0.00 43.15 2.43
3307 4314 6.993902 ACGAGATTAGAGAGACTAAACCCTAG 59.006 42.308 0.00 0.00 43.15 3.02
3308 4315 6.766944 CACGAGATTAGAGAGACTAAACCCTA 59.233 42.308 0.00 0.00 43.15 3.53
3309 4316 5.591067 CACGAGATTAGAGAGACTAAACCCT 59.409 44.000 0.00 0.00 43.15 4.34
3310 4317 5.221087 CCACGAGATTAGAGAGACTAAACCC 60.221 48.000 0.00 0.00 43.15 4.11
3311 4318 5.357596 ACCACGAGATTAGAGAGACTAAACC 59.642 44.000 0.00 0.00 43.15 3.27
3312 4319 6.439675 ACCACGAGATTAGAGAGACTAAAC 57.560 41.667 0.00 0.00 43.15 2.01
3313 4320 7.563020 TCTACCACGAGATTAGAGAGACTAAA 58.437 38.462 0.00 0.00 43.15 1.85
3314 4321 7.122138 TCTACCACGAGATTAGAGAGACTAA 57.878 40.000 0.00 0.00 43.89 2.24
3315 4322 6.728089 TCTACCACGAGATTAGAGAGACTA 57.272 41.667 0.00 0.00 0.00 2.59
3316 4323 5.617528 TCTACCACGAGATTAGAGAGACT 57.382 43.478 0.00 0.00 0.00 3.24
3317 4324 6.228258 AGATCTACCACGAGATTAGAGAGAC 58.772 44.000 0.00 0.00 36.27 3.36
3318 4325 6.428083 AGATCTACCACGAGATTAGAGAGA 57.572 41.667 0.00 0.00 36.27 3.10
3319 4326 7.383687 AGTAGATCTACCACGAGATTAGAGAG 58.616 42.308 25.93 0.00 36.27 3.20
3320 4327 7.305813 AGTAGATCTACCACGAGATTAGAGA 57.694 40.000 25.93 0.00 36.27 3.10
3321 4328 7.591006 GAGTAGATCTACCACGAGATTAGAG 57.409 44.000 25.93 0.00 36.27 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.