Multiple sequence alignment - TraesCS2A01G096800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G096800 chr2A 100.000 3066 0 0 3212 6277 50276893 50273828 0.000000e+00 5662.0
1 TraesCS2A01G096800 chr2A 100.000 2835 0 0 1 2835 50280104 50277270 0.000000e+00 5236.0
2 TraesCS2A01G096800 chr2A 96.285 323 12 0 5955 6277 677958469 677958147 1.200000e-146 531.0
3 TraesCS2A01G096800 chr2A 79.576 519 66 22 5275 5773 50206269 50205771 1.010000e-87 335.0
4 TraesCS2A01G096800 chr2A 95.122 41 2 0 19 59 207371729 207371769 1.460000e-06 65.8
5 TraesCS2A01G096800 chr2B 91.300 2862 147 46 1 2835 74833891 74836677 0.000000e+00 3812.0
6 TraesCS2A01G096800 chr2B 92.502 2174 102 19 3814 5954 74837281 74839426 0.000000e+00 3055.0
7 TraesCS2A01G096800 chr2B 89.587 557 43 8 3212 3758 74836728 74837279 0.000000e+00 693.0
8 TraesCS2A01G096800 chr2B 95.385 325 15 0 5953 6277 776222960 776223284 9.330000e-143 518.0
9 TraesCS2A01G096800 chr2B 83.924 423 62 5 4858 5278 74839803 74840221 3.530000e-107 399.0
10 TraesCS2A01G096800 chr2D 92.828 2482 122 32 173 2627 47219737 47222189 0.000000e+00 3546.0
11 TraesCS2A01G096800 chr2D 89.537 1491 116 25 3212 4682 47222359 47223829 0.000000e+00 1853.0
12 TraesCS2A01G096800 chr2D 90.867 1281 83 17 4684 5954 47223913 47225169 0.000000e+00 1687.0
13 TraesCS2A01G096800 chr7B 96.000 325 13 0 5953 6277 692881450 692881774 4.310000e-146 529.0
14 TraesCS2A01G096800 chr3A 96.000 325 13 0 5953 6277 735555339 735555663 4.310000e-146 529.0
15 TraesCS2A01G096800 chr6A 95.692 325 14 0 5953 6277 533982324 533982000 2.000000e-144 523.0
16 TraesCS2A01G096800 chr6A 95.385 325 15 0 5953 6277 616131294 616131618 9.330000e-143 518.0
17 TraesCS2A01G096800 chr4A 95.679 324 14 0 5954 6277 36562912 36563235 7.210000e-144 521.0
18 TraesCS2A01G096800 chr4A 95.413 327 15 0 5951 6277 603147224 603146898 7.210000e-144 521.0
19 TraesCS2A01G096800 chr6B 95.666 323 14 0 5955 6277 660437743 660437421 2.590000e-143 520.0
20 TraesCS2A01G096800 chr3D 89.706 68 6 1 97 163 98538283 98538350 1.120000e-12 86.1
21 TraesCS2A01G096800 chr5D 87.755 49 6 0 28 76 302001309 302001261 2.440000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G096800 chr2A 50273828 50280104 6276 True 5449.00 5662 100.000000 1 6277 2 chr2A.!!$R3 6276
1 TraesCS2A01G096800 chr2B 74833891 74840221 6330 False 1989.75 3812 89.328250 1 5954 4 chr2B.!!$F2 5953
2 TraesCS2A01G096800 chr2D 47219737 47225169 5432 False 2362.00 3546 91.077333 173 5954 3 chr2D.!!$F1 5781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 318 0.040499 TTTGTTACCCCCATCCCAGC 59.960 55.0 0.00 0.0 0.00 4.85 F
1230 1255 0.036010 CCATGTGGGAGTCGCTCTTT 60.036 55.0 8.82 0.0 40.01 2.52 F
1413 1438 0.118346 ACTACATGGTGTCCTCCCCA 59.882 55.0 0.00 0.0 34.66 4.96 F
1428 1453 0.462759 CCCCAAAGCGAGAGATGGTC 60.463 60.0 0.00 0.0 31.48 4.02 F
2260 2296 0.545787 TGGGGGTGGTGTGGTAGTAG 60.546 60.0 0.00 0.0 0.00 2.57 F
2832 2881 0.036765 CGACGGTGAATTTGAGGGGA 60.037 55.0 0.00 0.0 0.00 4.81 F
3749 3863 0.171903 AGTACACATACGTGACGCCC 59.828 55.0 4.25 0.0 46.80 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1454 1479 0.875059 GGTGCTGTTGTTGTAGAGGC 59.125 55.0 0.00 0.0 0.00 4.70 R
2640 2684 0.039618 GCCATTCAACTCCCCCTTCA 59.960 55.0 0.00 0.0 0.00 3.02 R
2679 2727 0.040692 CGCTGAAATCGGCCATCATG 60.041 55.0 2.24 0.0 45.16 3.07 R
2680 2728 0.179048 TCGCTGAAATCGGCCATCAT 60.179 50.0 2.24 0.0 45.16 2.45 R
3730 3841 0.171903 GGGCGTCACGTATGTGTACT 59.828 55.0 14.63 0.0 46.49 2.73 R
4811 5007 0.036164 GCCACCAAATTTTGTCCCCC 59.964 55.0 8.26 0.0 0.00 5.40 R
5704 5933 0.108992 TACACGATGACAGCCCGAAC 60.109 55.0 0.00 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.552699 CGAACGTCCGGATTTTAAGCATA 59.447 43.478 7.81 0.00 0.00 3.14
61 62 2.870411 ACGTCCGGATTTTAAGCATAGC 59.130 45.455 7.81 0.00 0.00 2.97
63 64 3.059597 CGTCCGGATTTTAAGCATAGCAG 60.060 47.826 7.81 0.00 0.00 4.24
83 84 4.496175 GCAGCCCAAACATTTTCAAACTTG 60.496 41.667 0.00 0.00 0.00 3.16
127 129 1.335496 CCACAAAATCGTTCGGGTTGT 59.665 47.619 0.00 0.00 32.78 3.32
140 142 4.695217 TCGGGTTGTCATGCTTAAAATC 57.305 40.909 0.00 0.00 0.00 2.17
168 170 4.183101 GTTCGGGATTTGTCATTACCGTA 58.817 43.478 6.80 0.00 41.82 4.02
188 190 0.535553 AAACCCTAGGCGAACGCAAA 60.536 50.000 20.16 6.99 44.11 3.68
297 309 5.738619 ATCAAAAGACCATTTGTTACCCC 57.261 39.130 0.00 0.00 40.40 4.95
305 317 2.387757 CATTTGTTACCCCCATCCCAG 58.612 52.381 0.00 0.00 0.00 4.45
306 318 0.040499 TTTGTTACCCCCATCCCAGC 59.960 55.000 0.00 0.00 0.00 4.85
307 319 0.849094 TTGTTACCCCCATCCCAGCT 60.849 55.000 0.00 0.00 0.00 4.24
345 359 1.961793 AACAGCCACGCTCTTTAACA 58.038 45.000 0.00 0.00 36.40 2.41
414 428 7.236432 AGACTGTTGGAATATATATCTGGCTGT 59.764 37.037 0.00 0.00 0.00 4.40
434 448 8.251721 TGGCTGTAGTATAAAAGTTTCTCTCTC 58.748 37.037 0.00 0.00 0.00 3.20
741 755 0.176910 CCAACCAAAACACCGCCTTT 59.823 50.000 0.00 0.00 0.00 3.11
902 920 5.246981 ACATCTCTGAGATTGAAACCCAA 57.753 39.130 17.27 0.00 39.41 4.12
929 947 2.222819 GCTAGCTTCAACGACGATTTGG 60.223 50.000 7.70 0.00 0.00 3.28
980 1002 1.373748 CCGGTGTAGTTGGGACACG 60.374 63.158 0.00 0.00 46.69 4.49
981 1003 1.661480 CGGTGTAGTTGGGACACGA 59.339 57.895 0.00 0.00 46.69 4.35
982 1004 0.245539 CGGTGTAGTTGGGACACGAT 59.754 55.000 0.00 0.00 46.69 3.73
984 1006 2.100252 CGGTGTAGTTGGGACACGATAT 59.900 50.000 0.00 0.00 46.69 1.63
985 1007 3.714391 GGTGTAGTTGGGACACGATATC 58.286 50.000 0.00 0.00 46.69 1.63
986 1008 3.383825 GGTGTAGTTGGGACACGATATCT 59.616 47.826 0.34 0.00 46.69 1.98
987 1009 4.499357 GGTGTAGTTGGGACACGATATCTC 60.499 50.000 0.34 0.00 46.69 2.75
988 1010 4.097437 GTGTAGTTGGGACACGATATCTCA 59.903 45.833 0.34 0.00 39.29 3.27
990 1012 4.327982 AGTTGGGACACGATATCTCATG 57.672 45.455 0.34 0.00 39.29 3.07
991 1013 3.706594 AGTTGGGACACGATATCTCATGT 59.293 43.478 0.34 2.70 39.29 3.21
992 1014 3.733443 TGGGACACGATATCTCATGTG 57.267 47.619 8.40 7.62 38.28 3.21
1011 1036 4.758251 TCACGCATGGGGACGCTG 62.758 66.667 14.94 2.91 0.00 5.18
1113 1138 1.136984 GGAGTCGAACATCGTCGCT 59.863 57.895 0.00 0.00 41.35 4.93
1116 1141 0.456312 AGTCGAACATCGTCGCTTCC 60.456 55.000 0.00 0.00 41.35 3.46
1230 1255 0.036010 CCATGTGGGAGTCGCTCTTT 60.036 55.000 8.82 0.00 40.01 2.52
1363 1388 1.271597 ACATGGTGTCTTCTCCCAAGC 60.272 52.381 0.00 0.00 0.00 4.01
1413 1438 0.118346 ACTACATGGTGTCCTCCCCA 59.882 55.000 0.00 0.00 34.66 4.96
1417 1442 0.967380 CATGGTGTCCTCCCCAAAGC 60.967 60.000 0.00 0.00 33.66 3.51
1428 1453 0.462759 CCCCAAAGCGAGAGATGGTC 60.463 60.000 0.00 0.00 31.48 4.02
1501 1526 1.450531 GAGCTACATGCATGGCACCC 61.451 60.000 29.41 12.38 43.04 4.61
1545 1570 1.301244 CAGCAATCTCGCCGGCTAT 60.301 57.895 26.68 12.50 34.25 2.97
1678 1703 1.000396 AACCTTGCTCTGCCATCCC 60.000 57.895 0.00 0.00 0.00 3.85
1859 1884 2.721167 CGGTCGGCAGAGGGATTCA 61.721 63.158 0.00 0.00 0.00 2.57
1869 1894 0.621862 GAGGGATTCAGGTGGGAGGT 60.622 60.000 0.00 0.00 0.00 3.85
1878 1903 2.991540 GTGGGAGGTTTGCAGCCC 60.992 66.667 5.86 0.00 41.08 5.19
1971 1996 1.003580 GACCAGTGGGCAGATTCTTCA 59.996 52.381 11.25 0.00 37.90 3.02
2083 2111 7.462109 TTTATTTTTATGTTCATGCGATGGC 57.538 32.000 0.00 0.00 40.52 4.40
2107 2141 3.753272 ACCATGCATCAAGTTACACAGAC 59.247 43.478 0.00 0.00 0.00 3.51
2257 2293 2.754375 GTGGGGGTGGTGTGGTAG 59.246 66.667 0.00 0.00 0.00 3.18
2258 2294 2.151388 GTGGGGGTGGTGTGGTAGT 61.151 63.158 0.00 0.00 0.00 2.73
2259 2295 0.837260 GTGGGGGTGGTGTGGTAGTA 60.837 60.000 0.00 0.00 0.00 1.82
2260 2296 0.545787 TGGGGGTGGTGTGGTAGTAG 60.546 60.000 0.00 0.00 0.00 2.57
2262 2298 1.624391 GGGGGTGGTGTGGTAGTAGAT 60.624 57.143 0.00 0.00 0.00 1.98
2263 2299 2.193993 GGGGTGGTGTGGTAGTAGATT 58.806 52.381 0.00 0.00 0.00 2.40
2264 2300 3.377573 GGGGTGGTGTGGTAGTAGATTA 58.622 50.000 0.00 0.00 0.00 1.75
2265 2301 3.971971 GGGGTGGTGTGGTAGTAGATTAT 59.028 47.826 0.00 0.00 0.00 1.28
2266 2302 5.149976 GGGGTGGTGTGGTAGTAGATTATA 58.850 45.833 0.00 0.00 0.00 0.98
2267 2303 5.245526 GGGGTGGTGTGGTAGTAGATTATAG 59.754 48.000 0.00 0.00 0.00 1.31
2268 2304 5.279356 GGGTGGTGTGGTAGTAGATTATAGC 60.279 48.000 0.00 0.00 0.00 2.97
2269 2305 5.279356 GGTGGTGTGGTAGTAGATTATAGCC 60.279 48.000 0.00 0.00 0.00 3.93
2270 2306 5.303589 GTGGTGTGGTAGTAGATTATAGCCA 59.696 44.000 0.00 0.00 0.00 4.75
2271 2307 5.900699 TGGTGTGGTAGTAGATTATAGCCAA 59.099 40.000 0.00 0.00 0.00 4.52
2295 2331 4.092091 GTCAGATTGAGACCGCTGTTTTAG 59.908 45.833 0.00 0.00 0.00 1.85
2328 2364 6.705381 TGCCAAAAGTATGCCATATTTAATGC 59.295 34.615 0.00 0.00 0.00 3.56
2380 2416 2.341543 CCGCATCGAGGGATCCAG 59.658 66.667 15.23 4.35 0.00 3.86
2392 2428 4.622933 CGAGGGATCCAGACAAACACAATA 60.623 45.833 15.23 0.00 0.00 1.90
2403 2439 3.242608 ACAAACACAATACGCACACACTC 60.243 43.478 0.00 0.00 0.00 3.51
2408 2444 1.992667 CAATACGCACACACTCGACAT 59.007 47.619 0.00 0.00 0.00 3.06
2417 2453 4.397382 CACACACTCGACATTTTGCATAG 58.603 43.478 0.00 0.00 0.00 2.23
2434 2470 4.520743 CATAGTTAGGATGCACACAACG 57.479 45.455 0.00 0.00 0.00 4.10
2445 2481 2.809119 TGCACACAACGTAAAATCCGAT 59.191 40.909 0.00 0.00 0.00 4.18
2450 2486 2.809119 ACAACGTAAAATCCGATGCACA 59.191 40.909 0.00 0.00 32.15 4.57
2459 2495 0.660488 TCCGATGCACACACACAAAC 59.340 50.000 0.00 0.00 0.00 2.93
2464 2500 2.815657 TGCACACACACAAACTAACG 57.184 45.000 0.00 0.00 0.00 3.18
2469 2505 1.398739 CACACACAAACTAACGTGCCA 59.601 47.619 0.00 0.00 36.57 4.92
2488 2528 2.629617 CCAACAAAGAGCAATTGAGGGT 59.370 45.455 10.34 0.00 0.00 4.34
2499 2539 6.543831 AGAGCAATTGAGGGTGTAATATGTTC 59.456 38.462 10.34 0.00 0.00 3.18
2506 2546 5.190726 TGAGGGTGTAATATGTTCATGGACA 59.809 40.000 9.85 9.85 0.00 4.02
2520 2560 6.206634 TGTTCATGGACACCTAAAATCAAGTC 59.793 38.462 1.52 0.00 0.00 3.01
2530 2570 7.175119 ACACCTAAAATCAAGTCTTAGAAAGCC 59.825 37.037 0.00 0.00 0.00 4.35
2564 2604 3.133003 ACTGTCTGATACGAGGGAAATGG 59.867 47.826 0.00 0.00 0.00 3.16
2571 2611 2.362375 GAGGGAAATGGGCGGCAA 60.362 61.111 12.47 0.00 0.00 4.52
2572 2612 2.362889 AGGGAAATGGGCGGCAAG 60.363 61.111 12.47 0.00 0.00 4.01
2591 2635 1.902508 AGCCGAGTGGAAGAAGATGAA 59.097 47.619 0.00 0.00 37.49 2.57
2613 2657 1.521141 GCGGAAGGGGGAGTAAGAC 59.479 63.158 0.00 0.00 0.00 3.01
2640 2684 0.990818 GGGAAGGGGAAGAGGCAGAT 60.991 60.000 0.00 0.00 0.00 2.90
2651 2699 0.985490 GAGGCAGATGAAGGGGGAGT 60.985 60.000 0.00 0.00 0.00 3.85
2705 2753 1.696832 GCCGATTTCAGCGAGGTCAC 61.697 60.000 0.00 0.00 0.00 3.67
2706 2754 0.389817 CCGATTTCAGCGAGGTCACA 60.390 55.000 0.00 0.00 0.00 3.58
2709 2757 2.143122 GATTTCAGCGAGGTCACACAA 58.857 47.619 0.00 0.00 0.00 3.33
2722 2770 1.077501 ACACAAGGCATCCGATGGG 60.078 57.895 10.41 0.00 0.00 4.00
2723 2771 1.077501 CACAAGGCATCCGATGGGT 60.078 57.895 10.41 0.00 33.83 4.51
2724 2772 0.180171 CACAAGGCATCCGATGGGTA 59.820 55.000 10.41 0.00 33.83 3.69
2727 2775 1.134098 CAAGGCATCCGATGGGTAGTT 60.134 52.381 10.41 0.00 33.83 2.24
2729 2777 1.971357 AGGCATCCGATGGGTAGTTAG 59.029 52.381 10.41 0.00 33.83 2.34
2733 2781 3.614390 GCATCCGATGGGTAGTTAGTAGC 60.614 52.174 10.41 0.00 33.83 3.58
2742 2790 4.150359 GGGTAGTTAGTAGCAGCCTATCA 58.850 47.826 0.00 0.00 0.00 2.15
2798 2847 2.968574 ACTCCTGAGCTCTTGACTTGAA 59.031 45.455 16.19 0.00 0.00 2.69
2809 2858 5.679734 TCTTGACTTGAATCAGACAAAGC 57.320 39.130 0.00 0.00 29.81 3.51
2816 2865 1.298859 AATCAGACAAAGCCGGCGAC 61.299 55.000 23.20 11.77 0.00 5.19
2829 2878 1.794222 GGCGACGGTGAATTTGAGG 59.206 57.895 0.00 0.00 0.00 3.86
2831 2880 1.644786 GCGACGGTGAATTTGAGGGG 61.645 60.000 0.00 0.00 0.00 4.79
2832 2881 0.036765 CGACGGTGAATTTGAGGGGA 60.037 55.000 0.00 0.00 0.00 4.81
2833 2882 1.739067 GACGGTGAATTTGAGGGGAG 58.261 55.000 0.00 0.00 0.00 4.30
2834 2883 1.278127 GACGGTGAATTTGAGGGGAGA 59.722 52.381 0.00 0.00 0.00 3.71
3279 3374 0.383949 TTTGTTTGCAGAACCTCCGC 59.616 50.000 8.60 0.00 0.00 5.54
3299 3394 2.270297 GATGCGCCGCTGTCCATTTT 62.270 55.000 11.67 0.00 0.00 1.82
3339 3434 3.460825 AGTCCATGAACTTAAGGGCCTA 58.539 45.455 6.41 0.00 0.00 3.93
3351 3447 7.713734 ACTTAAGGGCCTAATTTTTAAGGAC 57.286 36.000 19.47 0.00 40.53 3.85
3354 3450 3.267551 AGGGCCTAATTTTTAAGGACGGA 59.732 43.478 2.82 0.00 42.38 4.69
3402 3505 2.754648 CGAGAAAGAGGCGCATGAA 58.245 52.632 10.83 0.00 0.00 2.57
3415 3518 3.357897 GCGCATGAAAGAGAGTAATTGC 58.642 45.455 0.30 0.00 0.00 3.56
3424 3528 2.119495 GAGAGTAATTGCAGAGGGGGA 58.881 52.381 0.00 0.00 0.00 4.81
3463 3567 8.150945 GTCATGACCTAGGATTCAGCTTTATTA 58.849 37.037 17.98 0.00 0.00 0.98
3594 3701 6.803320 CGCAAGATTTTAAAGAGCAAGAATCA 59.197 34.615 0.00 0.00 43.02 2.57
3730 3841 6.486320 TGAACAAAGCATGTTTCACATAGAGA 59.514 34.615 8.99 0.00 45.86 3.10
3731 3842 6.492007 ACAAAGCATGTTTCACATAGAGAG 57.508 37.500 0.00 0.00 40.06 3.20
3749 3863 0.171903 AGTACACATACGTGACGCCC 59.828 55.000 4.25 0.00 46.80 6.13
3750 3864 1.135699 GTACACATACGTGACGCCCG 61.136 60.000 4.25 0.00 46.80 6.13
3766 3880 2.872245 CGCCCGTATGAATGATTTGAGT 59.128 45.455 0.00 0.00 0.00 3.41
3767 3881 3.312421 CGCCCGTATGAATGATTTGAGTT 59.688 43.478 0.00 0.00 0.00 3.01
3768 3882 4.552767 CGCCCGTATGAATGATTTGAGTTC 60.553 45.833 0.00 0.00 0.00 3.01
3769 3883 4.335315 GCCCGTATGAATGATTTGAGTTCA 59.665 41.667 0.00 0.00 36.42 3.18
3770 3884 5.009010 GCCCGTATGAATGATTTGAGTTCAT 59.991 40.000 5.33 5.33 43.06 2.57
3771 3885 6.432936 CCCGTATGAATGATTTGAGTTCATG 58.567 40.000 9.40 0.00 41.31 3.07
3772 3886 6.432936 CCGTATGAATGATTTGAGTTCATGG 58.567 40.000 9.40 1.18 41.31 3.66
3773 3887 5.911280 CGTATGAATGATTTGAGTTCATGGC 59.089 40.000 9.40 3.19 41.31 4.40
3774 3888 6.238566 CGTATGAATGATTTGAGTTCATGGCT 60.239 38.462 9.40 0.00 41.31 4.75
3775 3889 5.988310 TGAATGATTTGAGTTCATGGCTT 57.012 34.783 0.00 0.00 34.14 4.35
3776 3890 5.957798 TGAATGATTTGAGTTCATGGCTTC 58.042 37.500 0.00 0.00 34.14 3.86
3778 3892 6.153851 TGAATGATTTGAGTTCATGGCTTCAT 59.846 34.615 0.00 0.00 34.14 2.57
3780 3894 3.581024 TTTGAGTTCATGGCTTCATGC 57.419 42.857 0.00 0.00 45.81 4.06
3781 3895 2.203470 TGAGTTCATGGCTTCATGCA 57.797 45.000 0.00 0.00 45.81 3.96
3782 3896 2.089201 TGAGTTCATGGCTTCATGCAG 58.911 47.619 0.00 0.00 45.81 4.41
3784 3898 0.815734 GTTCATGGCTTCATGCAGCT 59.184 50.000 16.95 0.00 45.81 4.24
3786 3900 1.671979 TCATGGCTTCATGCAGCTAC 58.328 50.000 16.95 2.09 45.81 3.58
3788 3902 1.746787 CATGGCTTCATGCAGCTACAA 59.253 47.619 16.95 1.67 45.15 2.41
3790 3904 2.449464 TGGCTTCATGCAGCTACAAAT 58.551 42.857 16.95 0.00 45.15 2.32
3791 3905 2.424601 TGGCTTCATGCAGCTACAAATC 59.575 45.455 16.95 0.00 45.15 2.17
3793 3907 3.119388 GGCTTCATGCAGCTACAAATCAA 60.119 43.478 16.95 0.00 45.15 2.57
3794 3908 4.441079 GGCTTCATGCAGCTACAAATCAAT 60.441 41.667 16.95 0.00 45.15 2.57
3796 3910 5.005394 GCTTCATGCAGCTACAAATCAATTG 59.995 40.000 10.31 0.00 42.34 2.32
3858 3972 5.088739 CGCTACTGACAATTCAAATTCCAC 58.911 41.667 0.00 0.00 0.00 4.02
4010 4124 2.202743 GACTCCATGCAGCGCGTA 60.203 61.111 8.43 0.00 0.00 4.42
4058 4172 3.578272 CGCCTCTCGGTCTCCTCG 61.578 72.222 0.00 0.00 33.78 4.63
4277 4391 2.747855 CAGTGGCCGGCTTTCCTC 60.748 66.667 28.56 9.02 0.00 3.71
4631 4745 2.919228 CCATACTTCTTGGGCAGGTAC 58.081 52.381 0.00 0.00 0.00 3.34
4637 4751 0.608856 TCTTGGGCAGGTACGTACGA 60.609 55.000 24.41 5.69 0.00 3.43
4678 4792 7.973601 TCCTTGTTTTCAAATTTCTTTTGCTC 58.026 30.769 0.00 0.00 43.68 4.26
4724 4920 7.510001 AGGATAACCCATCATATGATTTTTGCA 59.490 33.333 15.74 0.89 37.41 4.08
4744 4940 6.795098 TGCACTTAACTAATGTGGTGTTAG 57.205 37.500 0.00 0.00 35.72 2.34
4778 4974 7.972832 TGTTAAGTAATCGGTGAGAAACATT 57.027 32.000 0.00 0.00 0.00 2.71
4792 4988 5.417266 TGAGAAACATTTGACAGACCAACAA 59.583 36.000 0.00 0.00 0.00 2.83
4806 5002 8.297470 ACAGACCAACAATGCATAGATAAATT 57.703 30.769 0.00 0.00 0.00 1.82
4811 5007 9.590451 ACCAACAATGCATAGATAAATTTGAAG 57.410 29.630 0.00 0.00 0.00 3.02
4813 5009 9.037737 CAACAATGCATAGATAAATTTGAAGGG 57.962 33.333 0.00 0.00 0.00 3.95
4814 5010 7.729116 ACAATGCATAGATAAATTTGAAGGGG 58.271 34.615 0.00 0.00 0.00 4.79
4815 5011 6.923199 ATGCATAGATAAATTTGAAGGGGG 57.077 37.500 0.00 0.00 0.00 5.40
4816 5012 6.024563 TGCATAGATAAATTTGAAGGGGGA 57.975 37.500 0.00 0.00 0.00 4.81
4817 5013 5.833131 TGCATAGATAAATTTGAAGGGGGAC 59.167 40.000 0.00 0.00 0.00 4.46
4818 5014 5.833131 GCATAGATAAATTTGAAGGGGGACA 59.167 40.000 0.00 0.00 0.00 4.02
4822 5018 7.813087 AGATAAATTTGAAGGGGGACAAAAT 57.187 32.000 0.00 0.00 39.01 1.82
4823 5019 8.218423 AGATAAATTTGAAGGGGGACAAAATT 57.782 30.769 0.00 0.00 39.01 1.82
4824 5020 8.668653 AGATAAATTTGAAGGGGGACAAAATTT 58.331 29.630 0.00 8.81 39.01 1.82
4826 5022 4.429854 TTTGAAGGGGGACAAAATTTGG 57.570 40.909 10.71 0.00 33.90 3.28
4829 5025 1.728323 AGGGGGACAAAATTTGGTGG 58.272 50.000 10.71 0.00 34.12 4.61
4830 5026 0.036164 GGGGGACAAAATTTGGTGGC 59.964 55.000 10.71 0.00 34.12 5.01
4831 5027 0.036164 GGGGACAAAATTTGGTGGCC 59.964 55.000 10.71 4.43 42.83 5.36
4833 5029 1.350684 GGGACAAAATTTGGTGGCCAT 59.649 47.619 9.72 0.00 45.68 4.40
4834 5030 2.569404 GGGACAAAATTTGGTGGCCATA 59.431 45.455 9.72 0.00 45.68 2.74
4835 5031 3.008485 GGGACAAAATTTGGTGGCCATAA 59.992 43.478 9.72 4.76 45.68 1.90
4836 5032 4.000325 GGACAAAATTTGGTGGCCATAAC 59.000 43.478 9.72 2.94 43.09 1.89
4837 5033 4.262851 GGACAAAATTTGGTGGCCATAACT 60.263 41.667 9.72 0.00 43.09 2.24
4840 5036 7.014988 ACAAAATTTGGTGGCCATAACTAAT 57.985 32.000 9.72 8.71 31.53 1.73
4842 5038 6.619329 AAATTTGGTGGCCATAACTAATGT 57.381 33.333 9.72 3.97 33.34 2.71
4843 5039 5.596836 ATTTGGTGGCCATAACTAATGTG 57.403 39.130 9.72 0.00 33.34 3.21
4844 5040 3.011566 TGGTGGCCATAACTAATGTGG 57.988 47.619 9.72 0.00 42.93 4.17
4845 5041 2.310349 TGGTGGCCATAACTAATGTGGT 59.690 45.455 9.72 0.00 42.10 4.16
4846 5042 2.687935 GGTGGCCATAACTAATGTGGTG 59.312 50.000 9.72 0.00 42.10 4.17
4847 5043 3.352648 GTGGCCATAACTAATGTGGTGT 58.647 45.455 9.72 0.00 42.10 4.16
4848 5044 3.761752 GTGGCCATAACTAATGTGGTGTT 59.238 43.478 9.72 0.00 42.10 3.32
4849 5045 4.944930 GTGGCCATAACTAATGTGGTGTTA 59.055 41.667 9.72 0.00 42.10 2.41
4850 5046 5.416326 GTGGCCATAACTAATGTGGTGTTAA 59.584 40.000 9.72 0.00 42.10 2.01
4851 5047 6.096282 GTGGCCATAACTAATGTGGTGTTAAT 59.904 38.462 9.72 0.00 42.10 1.40
4852 5048 6.665680 TGGCCATAACTAATGTGGTGTTAATT 59.334 34.615 0.00 0.00 42.10 1.40
4853 5049 7.147983 TGGCCATAACTAATGTGGTGTTAATTC 60.148 37.037 0.00 0.00 42.10 2.17
4854 5050 7.147983 GGCCATAACTAATGTGGTGTTAATTCA 60.148 37.037 0.00 0.00 42.10 2.57
4855 5051 8.247562 GCCATAACTAATGTGGTGTTAATTCAA 58.752 33.333 0.00 0.00 42.10 2.69
5013 5210 0.107945 GAAGGTCGAGCAATGCCTCT 60.108 55.000 18.15 0.00 0.00 3.69
5183 5380 0.682209 TCCTAGGACTTTACGGCGCT 60.682 55.000 7.62 0.00 0.00 5.92
5554 5754 2.376915 TCACGCAAACGACACAAATC 57.623 45.000 0.00 0.00 43.93 2.17
5556 5756 2.033236 TCACGCAAACGACACAAATCTC 60.033 45.455 0.00 0.00 43.93 2.75
5590 5819 9.925268 CATTTCTGAGTTTGAATTTTTCTTTGG 57.075 29.630 0.00 0.00 0.00 3.28
5633 5862 6.258230 TCAAAATGAGAACAACTATGGCAG 57.742 37.500 0.00 0.00 0.00 4.85
5654 5883 4.266502 CAGATTCGTCTGATTCTCCGTTTC 59.733 45.833 0.00 0.00 39.99 2.78
5678 5907 0.970427 TGCCAGCAGTCGAGTCCATA 60.970 55.000 0.00 0.00 0.00 2.74
5682 5911 3.643763 CCAGCAGTCGAGTCCATATTAC 58.356 50.000 0.00 0.00 0.00 1.89
5704 5933 3.742433 TGCATTGTGTTTTACTTGGGG 57.258 42.857 0.00 0.00 0.00 4.96
5705 5934 3.034635 TGCATTGTGTTTTACTTGGGGT 58.965 40.909 0.00 0.00 0.00 4.95
5706 5935 3.452627 TGCATTGTGTTTTACTTGGGGTT 59.547 39.130 0.00 0.00 0.00 4.11
5707 5936 4.055360 GCATTGTGTTTTACTTGGGGTTC 58.945 43.478 0.00 0.00 0.00 3.62
5708 5937 4.295051 CATTGTGTTTTACTTGGGGTTCG 58.705 43.478 0.00 0.00 0.00 3.95
5709 5938 2.299521 TGTGTTTTACTTGGGGTTCGG 58.700 47.619 0.00 0.00 0.00 4.30
5710 5939 1.610038 GTGTTTTACTTGGGGTTCGGG 59.390 52.381 0.00 0.00 0.00 5.14
5785 6016 0.943673 CACGAAACACACAGCATCCA 59.056 50.000 0.00 0.00 0.00 3.41
5873 6105 1.530655 CCTTCGGGTGCCTTTTGGT 60.531 57.895 0.00 0.00 42.99 3.67
5921 6153 5.655532 GGTCAGGGTTGTCTATGTAGTCTTA 59.344 44.000 0.00 0.00 0.00 2.10
5933 6165 8.206189 GTCTATGTAGTCTTAGGTCACTCTAGT 58.794 40.741 0.00 0.00 0.00 2.57
5938 6170 7.722728 TGTAGTCTTAGGTCACTCTAGTTTTCA 59.277 37.037 0.00 0.00 0.00 2.69
5942 6174 9.356433 GTCTTAGGTCACTCTAGTTTTCATTAC 57.644 37.037 0.00 0.00 0.00 1.89
5956 6188 7.101700 AGTTTTCATTACGGTTAAGTCTAGGG 58.898 38.462 0.00 0.00 0.00 3.53
5957 6189 6.610075 TTTCATTACGGTTAAGTCTAGGGT 57.390 37.500 0.00 0.00 0.00 4.34
5959 6191 5.969423 TCATTACGGTTAAGTCTAGGGTTG 58.031 41.667 0.00 0.00 0.00 3.77
5960 6192 5.716228 TCATTACGGTTAAGTCTAGGGTTGA 59.284 40.000 0.00 0.00 0.00 3.18
5961 6193 6.381994 TCATTACGGTTAAGTCTAGGGTTGAT 59.618 38.462 0.00 0.00 0.00 2.57
5962 6194 6.610075 TTACGGTTAAGTCTAGGGTTGATT 57.390 37.500 0.00 0.00 0.00 2.57
5963 6195 7.716799 TTACGGTTAAGTCTAGGGTTGATTA 57.283 36.000 0.00 0.00 0.00 1.75
5965 6197 7.191593 ACGGTTAAGTCTAGGGTTGATTATT 57.808 36.000 0.00 0.00 0.00 1.40
5966 6198 7.270779 ACGGTTAAGTCTAGGGTTGATTATTC 58.729 38.462 0.00 0.00 0.00 1.75
5967 6199 7.125356 ACGGTTAAGTCTAGGGTTGATTATTCT 59.875 37.037 0.00 0.00 0.00 2.40
5968 6200 7.985752 CGGTTAAGTCTAGGGTTGATTATTCTT 59.014 37.037 0.00 0.00 0.00 2.52
5972 6204 7.631717 AGTCTAGGGTTGATTATTCTTTTGC 57.368 36.000 0.00 0.00 0.00 3.68
5973 6205 6.603599 AGTCTAGGGTTGATTATTCTTTTGCC 59.396 38.462 0.00 0.00 0.00 4.52
5974 6206 5.891551 TCTAGGGTTGATTATTCTTTTGCCC 59.108 40.000 0.00 0.00 0.00 5.36
5976 6208 4.711846 AGGGTTGATTATTCTTTTGCCCTC 59.288 41.667 0.00 0.00 39.57 4.30
5979 6211 5.185828 GGTTGATTATTCTTTTGCCCTCAGT 59.814 40.000 0.00 0.00 0.00 3.41
5980 6212 5.902613 TGATTATTCTTTTGCCCTCAGTG 57.097 39.130 0.00 0.00 0.00 3.66
5983 6342 1.691196 TTCTTTTGCCCTCAGTGGTG 58.309 50.000 0.00 0.00 0.00 4.17
5988 6347 1.656587 TTGCCCTCAGTGGTGTCTAT 58.343 50.000 0.00 0.00 0.00 1.98
5991 6350 2.108168 GCCCTCAGTGGTGTCTATGTA 58.892 52.381 0.00 0.00 0.00 2.29
5992 6351 2.159085 GCCCTCAGTGGTGTCTATGTAC 60.159 54.545 0.00 0.00 0.00 2.90
5999 6358 5.538813 TCAGTGGTGTCTATGTACTCAGTTT 59.461 40.000 0.00 0.00 0.00 2.66
6000 6359 6.041637 TCAGTGGTGTCTATGTACTCAGTTTT 59.958 38.462 0.00 0.00 0.00 2.43
6001 6360 6.146184 CAGTGGTGTCTATGTACTCAGTTTTG 59.854 42.308 0.00 0.00 0.00 2.44
6006 6365 4.870991 GTCTATGTACTCAGTTTTGCCCTC 59.129 45.833 0.00 0.00 0.00 4.30
6007 6366 3.788227 ATGTACTCAGTTTTGCCCTCA 57.212 42.857 0.00 0.00 0.00 3.86
6011 6370 2.787994 ACTCAGTTTTGCCCTCAGATG 58.212 47.619 0.00 0.00 0.00 2.90
6012 6371 1.471684 CTCAGTTTTGCCCTCAGATGC 59.528 52.381 0.00 0.00 0.00 3.91
6014 6373 0.036732 AGTTTTGCCCTCAGATGCGA 59.963 50.000 0.00 0.00 0.00 5.10
6015 6374 0.881118 GTTTTGCCCTCAGATGCGAA 59.119 50.000 0.00 0.00 0.00 4.70
6016 6375 1.474077 GTTTTGCCCTCAGATGCGAAT 59.526 47.619 0.00 0.00 31.25 3.34
6019 6378 0.035152 TGCCCTCAGATGCGAATTGT 60.035 50.000 0.00 0.00 0.00 2.71
6020 6379 0.379669 GCCCTCAGATGCGAATTGTG 59.620 55.000 0.00 0.00 0.00 3.33
6021 6380 0.379669 CCCTCAGATGCGAATTGTGC 59.620 55.000 0.00 0.00 0.00 4.57
6024 6383 2.004733 CTCAGATGCGAATTGTGCTCA 58.995 47.619 0.00 0.00 0.00 4.26
6025 6384 2.004733 TCAGATGCGAATTGTGCTCAG 58.995 47.619 0.00 0.00 0.00 3.35
6026 6385 1.736126 CAGATGCGAATTGTGCTCAGT 59.264 47.619 0.00 0.00 0.00 3.41
6027 6386 2.161012 CAGATGCGAATTGTGCTCAGTT 59.839 45.455 0.00 0.00 0.00 3.16
6028 6387 2.816087 AGATGCGAATTGTGCTCAGTTT 59.184 40.909 0.00 0.00 0.00 2.66
6029 6388 3.254166 AGATGCGAATTGTGCTCAGTTTT 59.746 39.130 0.00 0.00 0.00 2.43
6030 6389 2.730069 TGCGAATTGTGCTCAGTTTTG 58.270 42.857 0.00 0.00 0.00 2.44
6031 6390 1.453148 GCGAATTGTGCTCAGTTTTGC 59.547 47.619 8.90 8.90 0.00 3.68
6032 6391 2.053627 CGAATTGTGCTCAGTTTTGCC 58.946 47.619 0.00 0.00 0.00 4.52
6034 6393 3.311966 GAATTGTGCTCAGTTTTGCCTC 58.688 45.455 0.00 0.00 0.00 4.70
6035 6394 2.057137 TTGTGCTCAGTTTTGCCTCT 57.943 45.000 0.00 0.00 0.00 3.69
6037 6396 2.771089 TGTGCTCAGTTTTGCCTCTAG 58.229 47.619 0.00 0.00 0.00 2.43
6038 6397 2.104792 TGTGCTCAGTTTTGCCTCTAGT 59.895 45.455 0.00 0.00 0.00 2.57
6039 6398 2.739379 GTGCTCAGTTTTGCCTCTAGTC 59.261 50.000 0.00 0.00 0.00 2.59
6040 6399 2.289694 TGCTCAGTTTTGCCTCTAGTCC 60.290 50.000 0.00 0.00 0.00 3.85
6041 6400 2.611518 CTCAGTTTTGCCTCTAGTCCG 58.388 52.381 0.00 0.00 0.00 4.79
6043 6402 2.069273 CAGTTTTGCCTCTAGTCCGTG 58.931 52.381 0.00 0.00 0.00 4.94
6046 6405 3.642778 TTGCCTCTAGTCCGTGCGC 62.643 63.158 0.00 0.00 0.00 6.09
6047 6406 4.129737 GCCTCTAGTCCGTGCGCA 62.130 66.667 5.66 5.66 0.00 6.09
6048 6407 2.202623 CCTCTAGTCCGTGCGCAC 60.203 66.667 30.42 30.42 0.00 5.34
6050 6409 4.111016 TCTAGTCCGTGCGCACCG 62.111 66.667 33.23 26.86 0.00 4.94
6051 6410 4.111016 CTAGTCCGTGCGCACCGA 62.111 66.667 33.23 28.69 0.00 4.69
6052 6411 4.409218 TAGTCCGTGCGCACCGAC 62.409 66.667 38.09 38.09 39.00 4.79
6057 6416 3.636043 CGTGCGCACCGACTTGTT 61.636 61.111 33.23 0.00 0.00 2.83
6058 6417 2.248431 GTGCGCACCGACTTGTTC 59.752 61.111 30.12 0.00 0.00 3.18
6060 6419 4.072088 GCGCACCGACTTGTTCCG 62.072 66.667 0.30 0.00 0.00 4.30
6061 6420 2.660552 CGCACCGACTTGTTCCGT 60.661 61.111 0.00 0.00 0.00 4.69
6062 6421 2.935955 GCACCGACTTGTTCCGTG 59.064 61.111 0.00 0.00 36.75 4.94
6063 6422 1.593209 GCACCGACTTGTTCCGTGA 60.593 57.895 0.00 0.00 35.99 4.35
6064 6423 1.155424 GCACCGACTTGTTCCGTGAA 61.155 55.000 0.00 0.00 35.99 3.18
6065 6424 0.580104 CACCGACTTGTTCCGTGAAC 59.420 55.000 9.13 9.13 42.26 3.18
6066 6425 0.462789 ACCGACTTGTTCCGTGAACT 59.537 50.000 14.95 0.00 42.39 3.01
6067 6426 1.137513 CCGACTTGTTCCGTGAACTC 58.862 55.000 14.95 6.45 42.39 3.01
6068 6427 1.269621 CCGACTTGTTCCGTGAACTCT 60.270 52.381 14.95 1.68 42.39 3.24
6069 6428 1.787155 CGACTTGTTCCGTGAACTCTG 59.213 52.381 14.95 9.11 42.39 3.35
6071 6430 0.868406 CTTGTTCCGTGAACTCTGCC 59.132 55.000 14.95 0.00 42.39 4.85
6073 6432 1.300697 GTTCCGTGAACTCTGCCGT 60.301 57.895 8.87 0.00 39.23 5.68
6075 6434 1.461091 TTCCGTGAACTCTGCCGTCT 61.461 55.000 0.00 0.00 0.00 4.18
6076 6435 1.006102 CCGTGAACTCTGCCGTCTT 60.006 57.895 0.00 0.00 0.00 3.01
6077 6436 1.009389 CCGTGAACTCTGCCGTCTTC 61.009 60.000 0.00 0.00 0.00 2.87
6078 6437 1.337817 CGTGAACTCTGCCGTCTTCG 61.338 60.000 0.00 0.00 0.00 3.79
6079 6438 0.318784 GTGAACTCTGCCGTCTTCGT 60.319 55.000 0.00 0.00 35.01 3.85
6080 6439 0.387929 TGAACTCTGCCGTCTTCGTT 59.612 50.000 0.00 0.00 35.01 3.85
6081 6440 1.610038 TGAACTCTGCCGTCTTCGTTA 59.390 47.619 0.00 0.00 35.01 3.18
6082 6441 2.251893 GAACTCTGCCGTCTTCGTTAG 58.748 52.381 0.00 0.00 35.01 2.34
6083 6442 0.526662 ACTCTGCCGTCTTCGTTAGG 59.473 55.000 0.00 0.00 35.01 2.69
6084 6443 0.526662 CTCTGCCGTCTTCGTTAGGT 59.473 55.000 0.00 0.00 35.01 3.08
6086 6445 0.242825 CTGCCGTCTTCGTTAGGTCA 59.757 55.000 0.00 0.00 35.01 4.02
6087 6446 0.675083 TGCCGTCTTCGTTAGGTCAA 59.325 50.000 0.00 0.00 35.01 3.18
6088 6447 1.066136 GCCGTCTTCGTTAGGTCAAC 58.934 55.000 0.00 0.00 35.01 3.18
6089 6448 1.706443 CCGTCTTCGTTAGGTCAACC 58.294 55.000 0.00 0.00 33.19 3.77
6090 6449 1.271656 CCGTCTTCGTTAGGTCAACCT 59.728 52.381 6.95 6.95 41.72 3.50
6091 6450 2.288640 CCGTCTTCGTTAGGTCAACCTT 60.289 50.000 7.07 0.00 40.33 3.50
6092 6451 3.387397 CGTCTTCGTTAGGTCAACCTTT 58.613 45.455 7.07 0.00 46.09 3.11
6093 6452 3.805971 CGTCTTCGTTAGGTCAACCTTTT 59.194 43.478 7.07 0.00 46.09 2.27
6094 6453 4.318546 CGTCTTCGTTAGGTCAACCTTTTG 60.319 45.833 7.07 0.00 46.09 2.44
6095 6454 4.812626 GTCTTCGTTAGGTCAACCTTTTGA 59.187 41.667 7.07 0.30 46.09 2.69
6102 6461 3.015516 TCAACCTTTTGACTCGGCC 57.984 52.632 0.00 0.00 36.79 6.13
6103 6462 0.536460 TCAACCTTTTGACTCGGCCC 60.536 55.000 0.00 0.00 36.79 5.80
6106 6465 1.061546 ACCTTTTGACTCGGCCCTTA 58.938 50.000 0.00 0.00 0.00 2.69
6107 6466 1.271217 ACCTTTTGACTCGGCCCTTAC 60.271 52.381 0.00 0.00 0.00 2.34
6110 6469 0.323629 TTTGACTCGGCCCTTACAGG 59.676 55.000 0.00 0.00 34.30 4.00
6116 6475 2.675371 GGCCCTTACAGGTGGGAC 59.325 66.667 1.75 0.00 46.15 4.46
6117 6476 2.675371 GCCCTTACAGGTGGGACC 59.325 66.667 1.75 0.00 46.15 4.46
6119 6478 1.683441 CCCTTACAGGTGGGACCAC 59.317 63.158 13.03 13.03 46.15 4.16
6137 6496 2.125512 GCGGCAGAGACGACCAAT 60.126 61.111 0.00 0.00 35.20 3.16
6138 6497 1.741770 GCGGCAGAGACGACCAATT 60.742 57.895 0.00 0.00 35.20 2.32
6140 6499 1.156736 CGGCAGAGACGACCAATTTT 58.843 50.000 0.00 0.00 35.20 1.82
6141 6500 2.343101 CGGCAGAGACGACCAATTTTA 58.657 47.619 0.00 0.00 35.20 1.52
6142 6501 2.936498 CGGCAGAGACGACCAATTTTAT 59.064 45.455 0.00 0.00 35.20 1.40
6143 6502 3.374058 CGGCAGAGACGACCAATTTTATT 59.626 43.478 0.00 0.00 35.20 1.40
6149 6508 6.591834 CAGAGACGACCAATTTTATTCAGACT 59.408 38.462 0.00 0.00 0.00 3.24
6150 6509 6.591834 AGAGACGACCAATTTTATTCAGACTG 59.408 38.462 0.00 0.00 0.00 3.51
6151 6510 6.231211 AGACGACCAATTTTATTCAGACTGT 58.769 36.000 1.59 0.00 0.00 3.55
6154 6513 5.569059 CGACCAATTTTATTCAGACTGTTGC 59.431 40.000 1.59 0.00 0.00 4.17
6155 6514 6.403866 ACCAATTTTATTCAGACTGTTGCA 57.596 33.333 1.59 0.00 0.00 4.08
6156 6515 6.215845 ACCAATTTTATTCAGACTGTTGCAC 58.784 36.000 1.59 0.00 0.00 4.57
6157 6516 5.343058 CCAATTTTATTCAGACTGTTGCACG 59.657 40.000 1.59 0.00 0.00 5.34
6158 6517 3.536158 TTTATTCAGACTGTTGCACGC 57.464 42.857 1.59 0.00 0.00 5.34
6159 6518 1.067693 TATTCAGACTGTTGCACGCG 58.932 50.000 3.53 3.53 0.00 6.01
6160 6519 0.880278 ATTCAGACTGTTGCACGCGT 60.880 50.000 5.58 5.58 0.00 6.01
6161 6520 1.761244 TTCAGACTGTTGCACGCGTG 61.761 55.000 34.01 34.01 0.00 5.34
6162 6521 2.967076 AGACTGTTGCACGCGTGG 60.967 61.111 37.47 23.74 0.00 4.94
6163 6522 4.666532 GACTGTTGCACGCGTGGC 62.667 66.667 37.47 28.75 0.00 5.01
6167 6526 4.250431 GTTGCACGCGTGGCTTGT 62.250 61.111 37.47 0.00 30.33 3.16
6168 6527 4.249020 TTGCACGCGTGGCTTGTG 62.249 61.111 37.47 13.78 36.70 3.33
6175 6534 4.263572 CGTGGCTTGTGGGACCCA 62.264 66.667 9.95 9.95 0.00 4.51
6176 6535 2.282462 GTGGCTTGTGGGACCCAG 60.282 66.667 15.52 3.22 32.34 4.45
6177 6536 4.284550 TGGCTTGTGGGACCCAGC 62.285 66.667 15.52 14.41 32.34 4.85
6179 6538 2.674380 GCTTGTGGGACCCAGCAG 60.674 66.667 15.52 13.94 32.34 4.24
6181 6540 1.002868 CTTGTGGGACCCAGCAGAG 60.003 63.158 15.52 5.72 32.34 3.35
6182 6541 1.461268 TTGTGGGACCCAGCAGAGA 60.461 57.895 15.52 0.00 32.34 3.10
6183 6542 1.483595 TTGTGGGACCCAGCAGAGAG 61.484 60.000 15.52 0.00 32.34 3.20
6184 6543 3.005539 TGGGACCCAGCAGAGAGC 61.006 66.667 9.95 0.00 46.19 4.09
6193 6552 2.047844 GCAGAGAGCCGTTGAGCA 60.048 61.111 0.00 0.00 37.23 4.26
6194 6553 2.099431 GCAGAGAGCCGTTGAGCAG 61.099 63.158 0.00 0.00 37.23 4.24
6195 6554 1.588597 CAGAGAGCCGTTGAGCAGA 59.411 57.895 0.00 0.00 34.23 4.26
6198 6557 0.179140 GAGAGCCGTTGAGCAGAGAG 60.179 60.000 0.00 0.00 34.23 3.20
6199 6558 1.809209 GAGCCGTTGAGCAGAGAGC 60.809 63.158 0.00 0.00 46.19 4.09
6217 6576 2.435938 CGTTGGCGGGTGTGCTAT 60.436 61.111 0.00 0.00 34.52 2.97
6218 6577 1.153529 CGTTGGCGGGTGTGCTATA 60.154 57.895 0.00 0.00 34.52 1.31
6220 6579 1.269883 CGTTGGCGGGTGTGCTATATA 60.270 52.381 0.00 0.00 34.52 0.86
6222 6581 2.806244 GTTGGCGGGTGTGCTATATAAG 59.194 50.000 0.00 0.00 34.52 1.73
6232 6591 1.630148 GCTATATAAGCGGGCGACAG 58.370 55.000 0.00 0.00 42.53 3.51
6253 6612 2.428569 CGGTGACCACGACGACAG 60.429 66.667 0.00 0.00 0.00 3.51
6255 6614 1.081376 GGTGACCACGACGACAGAG 60.081 63.158 0.00 0.00 0.00 3.35
6258 6617 1.154188 GACCACGACGACAGAGAGC 60.154 63.158 0.00 0.00 0.00 4.09
6259 6618 1.853114 GACCACGACGACAGAGAGCA 61.853 60.000 0.00 0.00 0.00 4.26
6261 6620 1.794003 CACGACGACAGAGAGCACG 60.794 63.158 0.00 0.00 0.00 5.34
6262 6621 2.202362 CGACGACAGAGAGCACGG 60.202 66.667 0.00 0.00 0.00 4.94
6263 6622 2.505118 GACGACAGAGAGCACGGC 60.505 66.667 0.00 0.00 0.00 5.68
6266 6625 4.057428 GACAGAGAGCACGGCGGT 62.057 66.667 13.24 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.642343 GATTTATCAGGGTCCTAATTTTAAGGT 57.358 33.333 0.00 0.00 35.48 3.50
18 19 3.931317 TCGGGATTTATCAGGGTCCTAA 58.069 45.455 0.00 0.00 0.00 2.69
27 28 1.202440 CCGGACGTTCGGGATTTATCA 60.202 52.381 28.28 0.00 45.78 2.15
59 60 3.118298 AGTTTGAAAATGTTTGGGCTGCT 60.118 39.130 0.00 0.00 0.00 4.24
61 62 4.635324 ACAAGTTTGAAAATGTTTGGGCTG 59.365 37.500 0.00 0.00 0.00 4.85
63 64 4.633565 TGACAAGTTTGAAAATGTTTGGGC 59.366 37.500 0.00 0.00 0.00 5.36
83 84 5.438761 AACTTTAGTTGATGCAAGGTGAC 57.561 39.130 0.00 0.00 36.80 3.67
110 111 3.233578 CATGACAACCCGAACGATTTTG 58.766 45.455 0.00 0.00 0.00 2.44
115 117 0.250124 AAGCATGACAACCCGAACGA 60.250 50.000 0.00 0.00 0.00 3.85
127 129 6.098679 CCGAACATTTGGATTTTAAGCATGA 58.901 36.000 0.00 0.00 33.23 3.07
140 142 3.932545 TGACAAATCCCGAACATTTGG 57.067 42.857 14.36 0.00 42.99 3.28
168 170 0.535553 TTGCGTTCGCCTAGGGTTTT 60.536 50.000 11.72 0.00 0.00 2.43
297 309 1.831286 GGGCAATCAGCTGGGATGG 60.831 63.158 15.13 0.00 44.79 3.51
305 317 0.469917 TACTAGCCTGGGCAATCAGC 59.530 55.000 14.39 0.00 44.88 4.26
306 318 3.281727 TTTACTAGCCTGGGCAATCAG 57.718 47.619 14.39 7.52 44.88 2.90
307 319 3.245087 TGTTTTACTAGCCTGGGCAATCA 60.245 43.478 14.39 2.05 44.88 2.57
345 359 1.202627 GCCATCGGCTGAGAGAAAGAT 60.203 52.381 0.00 0.00 46.69 2.40
369 383 4.778143 GGCAACGGCTGGGACGAT 62.778 66.667 0.00 0.00 35.20 3.73
434 448 7.792374 TCCATAAAGAAATCTGGAAATCTCG 57.208 36.000 0.00 0.00 34.91 4.04
741 755 2.231235 ACATGCACATCACGTAGAGACA 59.769 45.455 0.00 0.00 0.00 3.41
929 947 5.306532 TCTAACACCATCAACTACTCGAC 57.693 43.478 0.00 0.00 0.00 4.20
934 952 5.050769 CGATGCATCTAACACCATCAACTAC 60.051 44.000 23.73 0.00 35.08 2.73
935 953 5.049828 CGATGCATCTAACACCATCAACTA 58.950 41.667 23.73 0.00 35.08 2.24
936 954 3.873361 CGATGCATCTAACACCATCAACT 59.127 43.478 23.73 0.00 35.08 3.16
980 1002 4.084171 CCATGCGTGAACACATGAGATATC 60.084 45.833 7.72 0.00 45.23 1.63
981 1003 3.811497 CCATGCGTGAACACATGAGATAT 59.189 43.478 7.72 0.00 45.23 1.63
982 1004 3.197265 CCATGCGTGAACACATGAGATA 58.803 45.455 7.72 0.00 45.23 1.98
984 1006 1.441738 CCATGCGTGAACACATGAGA 58.558 50.000 7.72 0.00 45.23 3.27
985 1007 0.448990 CCCATGCGTGAACACATGAG 59.551 55.000 7.72 0.00 45.23 2.90
986 1008 0.959867 CCCCATGCGTGAACACATGA 60.960 55.000 7.72 0.00 45.23 3.07
987 1009 0.959867 TCCCCATGCGTGAACACATG 60.960 55.000 7.72 4.77 42.67 3.21
988 1010 0.960364 GTCCCCATGCGTGAACACAT 60.960 55.000 7.72 0.00 0.00 3.21
990 1012 2.677003 CGTCCCCATGCGTGAACAC 61.677 63.158 7.72 0.00 0.00 3.32
991 1013 2.358125 CGTCCCCATGCGTGAACA 60.358 61.111 7.72 0.00 0.00 3.18
992 1014 3.799755 GCGTCCCCATGCGTGAAC 61.800 66.667 7.72 1.85 0.00 3.18
993 1015 4.015406 AGCGTCCCCATGCGTGAA 62.015 61.111 7.72 0.00 39.81 3.18
1011 1036 0.867746 TCATGTCAACAGCGCAGTTC 59.132 50.000 15.89 6.32 0.00 3.01
1074 1099 2.610859 AAGGAGGCGGTGGGTGAT 60.611 61.111 0.00 0.00 0.00 3.06
1363 1388 3.448686 GTGAAGACATCATGTAGTCCCG 58.551 50.000 13.93 0.00 40.97 5.14
1417 1442 2.725008 GGAGGCGACCATCTCTCG 59.275 66.667 0.00 0.00 0.00 4.04
1454 1479 0.875059 GGTGCTGTTGTTGTAGAGGC 59.125 55.000 0.00 0.00 0.00 4.70
1501 1526 3.792047 CGTGTCCATGCCGTGCAG 61.792 66.667 4.90 0.00 43.65 4.41
1545 1570 2.747686 GACGACTTCCCCTTGCCA 59.252 61.111 0.00 0.00 0.00 4.92
1678 1703 1.944177 TCCAGGAAGGAGGAGTTCAG 58.056 55.000 0.00 0.00 43.07 3.02
1859 1884 2.116125 GCTGCAAACCTCCCACCT 59.884 61.111 0.00 0.00 0.00 4.00
1869 1894 1.377202 GAGGTGATCGGGCTGCAAA 60.377 57.895 0.50 0.00 0.00 3.68
1878 1903 1.264557 CTGGCGTAGTAGAGGTGATCG 59.735 57.143 0.00 0.00 0.00 3.69
2036 2064 7.690952 AAAATAAAAATTGATGCATGGCTGT 57.309 28.000 2.46 0.00 0.00 4.40
2072 2100 2.007113 GCATGGTTGCCATCGCATGA 62.007 55.000 0.00 0.00 46.67 3.07
2073 2101 1.590525 GCATGGTTGCCATCGCATG 60.591 57.895 13.60 0.00 46.67 4.06
2074 2102 2.809706 GCATGGTTGCCATCGCAT 59.190 55.556 13.60 0.00 46.67 4.73
2081 2109 6.348073 TGTGTAACTTGATGCATGGTTGCC 62.348 45.833 2.46 5.46 43.07 4.52
2082 2110 3.305267 TGTGTAACTTGATGCATGGTTGC 60.305 43.478 2.46 10.47 43.68 4.17
2083 2111 4.216042 TCTGTGTAACTTGATGCATGGTTG 59.784 41.667 2.46 0.00 38.04 3.77
2084 2112 4.216257 GTCTGTGTAACTTGATGCATGGTT 59.784 41.667 2.46 9.09 38.04 3.67
2086 2114 4.005650 AGTCTGTGTAACTTGATGCATGG 58.994 43.478 2.46 0.00 38.04 3.66
2107 2141 7.488471 CCTAAATCCTCAAGTCTACGTAAACAG 59.512 40.741 1.23 0.00 0.00 3.16
2257 2293 8.580720 TCTCAATCTGACTTGGCTATAATCTAC 58.419 37.037 0.00 0.00 0.00 2.59
2258 2294 8.580720 GTCTCAATCTGACTTGGCTATAATCTA 58.419 37.037 0.00 0.00 0.00 1.98
2259 2295 7.441017 GTCTCAATCTGACTTGGCTATAATCT 58.559 38.462 0.00 0.00 0.00 2.40
2260 2296 6.648725 GGTCTCAATCTGACTTGGCTATAATC 59.351 42.308 0.00 0.00 35.04 1.75
2262 2298 5.451937 CGGTCTCAATCTGACTTGGCTATAA 60.452 44.000 0.00 0.00 35.04 0.98
2263 2299 4.038042 CGGTCTCAATCTGACTTGGCTATA 59.962 45.833 0.00 0.00 35.04 1.31
2264 2300 3.181471 CGGTCTCAATCTGACTTGGCTAT 60.181 47.826 0.00 0.00 35.04 2.97
2265 2301 2.166459 CGGTCTCAATCTGACTTGGCTA 59.834 50.000 0.00 0.00 35.04 3.93
2266 2302 1.066573 CGGTCTCAATCTGACTTGGCT 60.067 52.381 0.00 0.00 35.04 4.75
2267 2303 1.363744 CGGTCTCAATCTGACTTGGC 58.636 55.000 0.00 0.00 35.04 4.52
2268 2304 1.066573 AGCGGTCTCAATCTGACTTGG 60.067 52.381 0.00 0.00 35.04 3.61
2269 2305 1.998315 CAGCGGTCTCAATCTGACTTG 59.002 52.381 0.00 0.00 35.04 3.16
2270 2306 1.620819 ACAGCGGTCTCAATCTGACTT 59.379 47.619 0.00 0.00 35.04 3.01
2271 2307 1.261480 ACAGCGGTCTCAATCTGACT 58.739 50.000 0.00 0.00 35.04 3.41
2295 2331 2.687370 CATACTTTTGGCAAGTTGGGC 58.313 47.619 4.75 0.00 0.00 5.36
2342 2378 5.634859 GCGGCATTTGATTCAATATAAAGGG 59.365 40.000 0.00 0.00 0.00 3.95
2380 2416 3.033185 GTGTGTGCGTATTGTGTTTGTC 58.967 45.455 0.00 0.00 0.00 3.18
2392 2428 1.003972 CAAAATGTCGAGTGTGTGCGT 60.004 47.619 0.00 0.00 0.00 5.24
2417 2453 4.735662 TTTACGTTGTGTGCATCCTAAC 57.264 40.909 0.00 0.00 0.00 2.34
2434 2470 3.058570 TGTGTGTGTGCATCGGATTTTAC 60.059 43.478 0.00 0.00 0.00 2.01
2445 2481 2.077627 ACGTTAGTTTGTGTGTGTGCA 58.922 42.857 0.00 0.00 0.00 4.57
2450 2486 1.740297 TGGCACGTTAGTTTGTGTGT 58.260 45.000 0.00 0.00 38.36 3.72
2459 2495 1.601903 TGCTCTTTGTTGGCACGTTAG 59.398 47.619 0.00 0.00 0.00 2.34
2464 2500 3.054878 CTCAATTGCTCTTTGTTGGCAC 58.945 45.455 0.00 0.00 35.62 5.01
2469 2505 3.299503 ACACCCTCAATTGCTCTTTGTT 58.700 40.909 0.00 0.00 0.00 2.83
2488 2528 9.693739 ATTTTAGGTGTCCATGAACATATTACA 57.306 29.630 0.00 0.00 0.00 2.41
2499 2539 6.824305 AAGACTTGATTTTAGGTGTCCATG 57.176 37.500 0.00 0.00 0.00 3.66
2506 2546 7.231467 TGGCTTTCTAAGACTTGATTTTAGGT 58.769 34.615 0.00 0.00 37.45 3.08
2510 2550 7.069950 AGGTTTGGCTTTCTAAGACTTGATTTT 59.930 33.333 0.00 0.00 37.45 1.82
2511 2551 6.551227 AGGTTTGGCTTTCTAAGACTTGATTT 59.449 34.615 0.00 0.00 37.45 2.17
2520 2560 7.013369 ACAGTAAGAAAGGTTTGGCTTTCTAAG 59.987 37.037 0.00 0.00 45.70 2.18
2530 2570 6.866770 TCGTATCAGACAGTAAGAAAGGTTTG 59.133 38.462 0.00 0.00 0.00 2.93
2544 2584 2.434336 CCCATTTCCCTCGTATCAGACA 59.566 50.000 0.00 0.00 0.00 3.41
2545 2585 2.807108 GCCCATTTCCCTCGTATCAGAC 60.807 54.545 0.00 0.00 0.00 3.51
2571 2611 1.561643 TCATCTTCTTCCACTCGGCT 58.438 50.000 0.00 0.00 0.00 5.52
2572 2612 2.386661 TTCATCTTCTTCCACTCGGC 57.613 50.000 0.00 0.00 0.00 5.54
2591 2635 2.776053 TTACTCCCCCTTCCGCCCTT 62.776 60.000 0.00 0.00 0.00 3.95
2613 2657 1.615424 TTCCCCTTCCCCTTCTCCG 60.615 63.158 0.00 0.00 0.00 4.63
2640 2684 0.039618 GCCATTCAACTCCCCCTTCA 59.960 55.000 0.00 0.00 0.00 3.02
2651 2699 0.776810 TCCCAAGGTGAGCCATTCAA 59.223 50.000 0.00 0.00 37.61 2.69
2676 2724 2.295349 GCTGAAATCGGCCATCATGAAT 59.705 45.455 2.24 0.00 42.27 2.57
2677 2725 1.677576 GCTGAAATCGGCCATCATGAA 59.322 47.619 2.24 0.00 42.27 2.57
2679 2727 0.040692 CGCTGAAATCGGCCATCATG 60.041 55.000 2.24 0.00 45.16 3.07
2680 2728 0.179048 TCGCTGAAATCGGCCATCAT 60.179 50.000 2.24 0.00 45.16 2.45
2681 2729 0.811219 CTCGCTGAAATCGGCCATCA 60.811 55.000 2.24 0.00 45.16 3.07
2686 2734 1.447838 TGACCTCGCTGAAATCGGC 60.448 57.895 4.09 4.09 44.53 5.54
2692 2740 0.249868 CCTTGTGTGACCTCGCTGAA 60.250 55.000 0.00 0.00 0.00 3.02
2705 2753 0.180171 TACCCATCGGATGCCTTGTG 59.820 55.000 12.54 0.00 0.00 3.33
2706 2754 0.469917 CTACCCATCGGATGCCTTGT 59.530 55.000 12.54 8.70 0.00 3.16
2709 2757 1.971357 CTAACTACCCATCGGATGCCT 59.029 52.381 12.54 2.07 0.00 4.75
2722 2770 5.379732 CCTGATAGGCTGCTACTAACTAC 57.620 47.826 0.00 0.00 0.00 2.73
2742 2790 3.350219 TTTAGCATTTCCTCGAAGCCT 57.650 42.857 0.00 0.00 0.00 4.58
2798 2847 1.741770 GTCGCCGGCTTTGTCTGAT 60.742 57.895 26.68 0.00 0.00 2.90
3224 3319 4.835284 ACAAATCTCTCTTTCTCTCCCC 57.165 45.455 0.00 0.00 0.00 4.81
3339 3434 6.262944 AGGTTTAACGTCCGTCCTTAAAAATT 59.737 34.615 0.00 0.00 0.00 1.82
3351 3447 7.816945 TTTTTAGATAGAGGTTTAACGTCCG 57.183 36.000 13.25 0.00 33.78 4.79
3388 3491 2.289945 ACTCTCTTTCATGCGCCTCTTT 60.290 45.455 4.18 0.00 0.00 2.52
3402 3505 2.507471 CCCCCTCTGCAATTACTCTCTT 59.493 50.000 0.00 0.00 0.00 2.85
3415 3518 1.425448 ACAACCTTCTTTCCCCCTCTG 59.575 52.381 0.00 0.00 0.00 3.35
3523 3628 8.025445 ACTGAAAATGAGAAACTATGCACATTC 58.975 33.333 0.00 0.00 0.00 2.67
3569 3675 6.803320 TGATTCTTGCTCTTTAAAATCTTGCG 59.197 34.615 0.00 0.00 0.00 4.85
3594 3701 7.568349 TCATCTGGAGTAATATTTGACTTGCT 58.432 34.615 0.00 0.00 0.00 3.91
3686 3797 7.435068 TGTTCATTTTTAGTAGGCAGAAGAC 57.565 36.000 0.00 0.00 0.00 3.01
3730 3841 0.171903 GGGCGTCACGTATGTGTACT 59.828 55.000 14.63 0.00 46.49 2.73
3731 3842 1.135699 CGGGCGTCACGTATGTGTAC 61.136 60.000 14.63 10.38 46.49 2.90
3749 3863 5.911280 GCCATGAACTCAAATCATTCATACG 59.089 40.000 0.00 0.00 40.30 3.06
3750 3864 7.035840 AGCCATGAACTCAAATCATTCATAC 57.964 36.000 0.00 0.00 40.30 2.39
3769 3883 2.133281 TTGTAGCTGCATGAAGCCAT 57.867 45.000 22.72 7.40 44.68 4.40
3770 3884 1.908344 TTTGTAGCTGCATGAAGCCA 58.092 45.000 22.72 11.31 44.68 4.75
3771 3885 2.424601 TGATTTGTAGCTGCATGAAGCC 59.575 45.455 22.72 8.55 44.68 4.35
3772 3886 3.770263 TGATTTGTAGCTGCATGAAGC 57.230 42.857 18.84 18.84 43.88 3.86
3773 3887 6.097356 ACAATTGATTTGTAGCTGCATGAAG 58.903 36.000 13.59 0.00 46.75 3.02
3774 3888 6.028146 ACAATTGATTTGTAGCTGCATGAA 57.972 33.333 13.59 0.00 46.75 2.57
3775 3889 5.648178 ACAATTGATTTGTAGCTGCATGA 57.352 34.783 13.59 0.00 46.75 3.07
3801 3915 1.269831 CCGGATTTGTTCGGCCAAAAA 60.270 47.619 2.24 0.00 39.78 1.94
3803 3917 0.537600 TCCGGATTTGTTCGGCCAAA 60.538 50.000 0.00 0.00 45.31 3.28
3804 3918 0.537600 TTCCGGATTTGTTCGGCCAA 60.538 50.000 4.15 0.00 45.31 4.52
3805 3919 0.322997 ATTCCGGATTTGTTCGGCCA 60.323 50.000 4.15 0.00 45.31 5.36
3806 3920 1.670791 TATTCCGGATTTGTTCGGCC 58.329 50.000 4.15 0.00 45.31 6.13
3807 3921 3.314080 TGATTATTCCGGATTTGTTCGGC 59.686 43.478 4.15 0.00 45.31 5.54
3808 3922 4.574828 ACTGATTATTCCGGATTTGTTCGG 59.425 41.667 4.15 7.07 46.89 4.30
3809 3923 5.734855 ACTGATTATTCCGGATTTGTTCG 57.265 39.130 4.15 0.00 0.00 3.95
3810 3924 8.009974 CGATTACTGATTATTCCGGATTTGTTC 58.990 37.037 4.15 0.00 0.00 3.18
3811 3925 7.519970 GCGATTACTGATTATTCCGGATTTGTT 60.520 37.037 4.15 0.00 0.00 2.83
3812 3926 6.073222 GCGATTACTGATTATTCCGGATTTGT 60.073 38.462 4.15 0.49 0.00 2.83
4007 4121 1.359475 GGCGAAGTAGGAGGCTACG 59.641 63.158 0.00 0.00 35.16 3.51
4010 4124 2.044252 TCGGCGAAGTAGGAGGCT 60.044 61.111 7.35 0.00 0.00 4.58
4091 4205 2.689771 GGCGGGAAGGGGTAAGGA 60.690 66.667 0.00 0.00 0.00 3.36
4094 4208 3.393106 GACGGCGGGAAGGGGTAA 61.393 66.667 13.24 0.00 0.00 2.85
4115 4229 7.038941 AGGATCTGGTAAATCTTTAGGGTATCG 60.039 40.741 0.00 0.00 0.00 2.92
4427 4541 1.447489 CAGCCTCTCCAGCTTGTCG 60.447 63.158 0.00 0.00 38.95 4.35
4628 4742 5.345741 TGAGTTTAATTTGGCTCGTACGTAC 59.654 40.000 15.90 15.90 0.00 3.67
4629 4743 5.468592 TGAGTTTAATTTGGCTCGTACGTA 58.531 37.500 16.05 0.00 0.00 3.57
4630 4744 4.309099 TGAGTTTAATTTGGCTCGTACGT 58.691 39.130 16.05 0.00 0.00 3.57
4631 4745 4.914312 TGAGTTTAATTTGGCTCGTACG 57.086 40.909 9.53 9.53 0.00 3.67
4637 4751 6.670695 AACAAGGATGAGTTTAATTTGGCT 57.329 33.333 0.00 0.00 0.00 4.75
4694 4890 9.525826 AAAATCATATGATGGGTTATCCTCTTC 57.474 33.333 18.85 0.00 34.77 2.87
4753 4949 7.972832 ATGTTTCTCACCGATTACTTAACAA 57.027 32.000 0.00 0.00 0.00 2.83
4778 4974 4.650734 TCTATGCATTGTTGGTCTGTCAA 58.349 39.130 3.54 0.00 0.00 3.18
4792 4988 6.494835 GTCCCCCTTCAAATTTATCTATGCAT 59.505 38.462 3.79 3.79 0.00 3.96
4806 5002 3.135530 CACCAAATTTTGTCCCCCTTCAA 59.864 43.478 8.26 0.00 0.00 2.69
4811 5007 0.036164 GCCACCAAATTTTGTCCCCC 59.964 55.000 8.26 0.00 0.00 5.40
4813 5009 0.761802 TGGCCACCAAATTTTGTCCC 59.238 50.000 0.00 0.00 0.00 4.46
4814 5010 2.857186 ATGGCCACCAAATTTTGTCC 57.143 45.000 8.16 4.72 36.95 4.02
4815 5011 4.893608 AGTTATGGCCACCAAATTTTGTC 58.106 39.130 8.16 0.00 36.95 3.18
4816 5012 4.972751 AGTTATGGCCACCAAATTTTGT 57.027 36.364 8.16 0.00 36.95 2.83
4817 5013 6.878389 ACATTAGTTATGGCCACCAAATTTTG 59.122 34.615 8.16 8.38 36.95 2.44
4818 5014 6.878389 CACATTAGTTATGGCCACCAAATTTT 59.122 34.615 8.16 0.00 36.95 1.82
4822 5018 3.766591 CCACATTAGTTATGGCCACCAAA 59.233 43.478 8.16 0.00 36.95 3.28
4823 5019 3.245443 ACCACATTAGTTATGGCCACCAA 60.245 43.478 8.16 1.55 36.95 3.67
4824 5020 2.310349 ACCACATTAGTTATGGCCACCA 59.690 45.455 8.16 0.00 38.64 4.17
4826 5022 3.352648 ACACCACATTAGTTATGGCCAC 58.647 45.455 8.16 0.00 38.64 5.01
4829 5025 7.767261 TGAATTAACACCACATTAGTTATGGC 58.233 34.615 0.00 0.00 38.64 4.40
4879 5075 1.273327 CAGCAATGAACTTTGTCCCCC 59.727 52.381 0.00 0.00 0.00 5.40
4889 5086 7.538575 ACCTGTATACAAATTCAGCAATGAAC 58.461 34.615 7.06 0.00 31.12 3.18
5519 5719 3.185594 TGCGTGAAGTTTTATCTGAACCG 59.814 43.478 0.00 0.00 0.00 4.44
5633 5862 4.425520 AGAAACGGAGAATCAGACGAATC 58.574 43.478 0.00 0.00 36.25 2.52
5678 5907 6.928492 CCCAAGTAAAACACAATGCAAGTAAT 59.072 34.615 0.00 0.00 0.00 1.89
5682 5911 4.057432 CCCCAAGTAAAACACAATGCAAG 58.943 43.478 0.00 0.00 0.00 4.01
5704 5933 0.108992 TACACGATGACAGCCCGAAC 60.109 55.000 0.00 0.00 0.00 3.95
5705 5934 0.821517 ATACACGATGACAGCCCGAA 59.178 50.000 0.00 0.00 0.00 4.30
5706 5935 0.821517 AATACACGATGACAGCCCGA 59.178 50.000 0.00 0.00 0.00 5.14
5707 5936 0.930310 CAATACACGATGACAGCCCG 59.070 55.000 0.00 0.00 0.00 6.13
5708 5937 2.024176 ACAATACACGATGACAGCCC 57.976 50.000 0.00 0.00 0.00 5.19
5709 5938 3.000041 TGAACAATACACGATGACAGCC 59.000 45.455 0.00 0.00 0.00 4.85
5710 5939 3.991069 GTGAACAATACACGATGACAGC 58.009 45.455 0.00 0.00 0.00 4.40
5751 5982 2.885861 GTGGAGTCGACCTCGCAT 59.114 61.111 13.01 0.00 41.46 4.73
5785 6016 2.685380 CTTGGGAGAGGAGGCGGT 60.685 66.667 0.00 0.00 0.00 5.68
5818 6049 1.369321 GCAGATCCCTTAGGCGGAG 59.631 63.158 0.00 0.00 31.41 4.63
5877 6109 1.768077 GGGTCTCCCTCCCCTCATG 60.768 68.421 0.00 0.00 41.34 3.07
5896 6128 3.105283 ACTACATAGACAACCCTGACCC 58.895 50.000 0.00 0.00 0.00 4.46
5901 6133 5.840081 ACCTAAGACTACATAGACAACCCT 58.160 41.667 0.00 0.00 0.00 4.34
5921 6153 5.245526 ACCGTAATGAAAACTAGAGTGACCT 59.754 40.000 0.00 0.00 0.00 3.85
5933 6165 7.008021 ACCCTAGACTTAACCGTAATGAAAA 57.992 36.000 0.00 0.00 0.00 2.29
5938 6170 6.803366 ATCAACCCTAGACTTAACCGTAAT 57.197 37.500 0.00 0.00 0.00 1.89
5942 6174 7.498443 AGAATAATCAACCCTAGACTTAACCG 58.502 38.462 0.00 0.00 0.00 4.44
5954 6186 4.466015 TGAGGGCAAAAGAATAATCAACCC 59.534 41.667 0.00 0.00 34.91 4.11
5956 6188 6.095377 CACTGAGGGCAAAAGAATAATCAAC 58.905 40.000 0.00 0.00 0.00 3.18
5957 6189 5.185635 CCACTGAGGGCAAAAGAATAATCAA 59.814 40.000 0.00 0.00 0.00 2.57
5959 6191 4.706962 ACCACTGAGGGCAAAAGAATAATC 59.293 41.667 0.00 0.00 43.89 1.75
5960 6192 4.463891 CACCACTGAGGGCAAAAGAATAAT 59.536 41.667 0.00 0.00 43.89 1.28
5961 6193 3.826157 CACCACTGAGGGCAAAAGAATAA 59.174 43.478 0.00 0.00 43.89 1.40
5962 6194 3.181434 ACACCACTGAGGGCAAAAGAATA 60.181 43.478 0.00 0.00 43.89 1.75
5963 6195 2.242043 CACCACTGAGGGCAAAAGAAT 58.758 47.619 0.00 0.00 43.89 2.40
5965 6197 0.550914 ACACCACTGAGGGCAAAAGA 59.449 50.000 0.00 0.00 43.89 2.52
5966 6198 0.954452 GACACCACTGAGGGCAAAAG 59.046 55.000 0.00 0.00 43.89 2.27
5967 6199 0.550914 AGACACCACTGAGGGCAAAA 59.449 50.000 0.00 0.00 43.89 2.44
5968 6200 1.429930 TAGACACCACTGAGGGCAAA 58.570 50.000 0.00 0.00 43.89 3.68
5970 6202 0.904649 CATAGACACCACTGAGGGCA 59.095 55.000 0.00 0.00 43.89 5.36
5971 6203 0.905357 ACATAGACACCACTGAGGGC 59.095 55.000 0.00 0.00 43.89 5.19
5972 6204 3.366396 AGTACATAGACACCACTGAGGG 58.634 50.000 0.00 0.00 43.89 4.30
5973 6205 4.017126 TGAGTACATAGACACCACTGAGG 58.983 47.826 0.00 0.00 45.67 3.86
5974 6206 4.702612 ACTGAGTACATAGACACCACTGAG 59.297 45.833 0.00 0.00 0.00 3.35
5976 6208 5.392767 AACTGAGTACATAGACACCACTG 57.607 43.478 0.00 0.00 0.00 3.66
5979 6211 4.994852 GCAAAACTGAGTACATAGACACCA 59.005 41.667 0.00 0.00 0.00 4.17
5980 6212 4.392138 GGCAAAACTGAGTACATAGACACC 59.608 45.833 0.00 0.00 0.00 4.16
5983 6342 4.833390 AGGGCAAAACTGAGTACATAGAC 58.167 43.478 0.00 0.00 0.00 2.59
5988 6347 2.703536 TCTGAGGGCAAAACTGAGTACA 59.296 45.455 0.00 0.00 0.00 2.90
5991 6350 2.787994 CATCTGAGGGCAAAACTGAGT 58.212 47.619 0.00 0.00 0.00 3.41
5992 6351 1.471684 GCATCTGAGGGCAAAACTGAG 59.528 52.381 0.00 0.00 0.00 3.35
5999 6358 1.097232 CAATTCGCATCTGAGGGCAA 58.903 50.000 5.18 0.25 0.00 4.52
6000 6359 0.035152 ACAATTCGCATCTGAGGGCA 60.035 50.000 5.18 0.00 0.00 5.36
6001 6360 0.379669 CACAATTCGCATCTGAGGGC 59.620 55.000 0.00 0.00 0.00 5.19
6006 6365 1.736126 ACTGAGCACAATTCGCATCTG 59.264 47.619 0.00 2.00 0.00 2.90
6007 6366 2.105006 ACTGAGCACAATTCGCATCT 57.895 45.000 0.00 0.00 0.00 2.90
6011 6370 1.453148 GCAAAACTGAGCACAATTCGC 59.547 47.619 0.00 0.00 0.00 4.70
6012 6371 2.053627 GGCAAAACTGAGCACAATTCG 58.946 47.619 0.00 0.00 0.00 3.34
6014 6373 2.961062 AGAGGCAAAACTGAGCACAATT 59.039 40.909 0.00 0.00 0.00 2.32
6015 6374 2.590821 AGAGGCAAAACTGAGCACAAT 58.409 42.857 0.00 0.00 0.00 2.71
6016 6375 2.057137 AGAGGCAAAACTGAGCACAA 57.943 45.000 0.00 0.00 0.00 3.33
6019 6378 2.289694 GGACTAGAGGCAAAACTGAGCA 60.290 50.000 0.00 0.00 0.00 4.26
6020 6379 2.351455 GGACTAGAGGCAAAACTGAGC 58.649 52.381 0.00 0.00 0.00 4.26
6021 6380 2.028930 ACGGACTAGAGGCAAAACTGAG 60.029 50.000 0.00 0.00 0.00 3.35
6024 6383 1.608283 GCACGGACTAGAGGCAAAACT 60.608 52.381 0.00 0.00 0.00 2.66
6025 6384 0.796927 GCACGGACTAGAGGCAAAAC 59.203 55.000 0.00 0.00 0.00 2.43
6026 6385 0.669318 CGCACGGACTAGAGGCAAAA 60.669 55.000 0.00 0.00 0.00 2.44
6027 6386 1.080093 CGCACGGACTAGAGGCAAA 60.080 57.895 0.00 0.00 0.00 3.68
6028 6387 2.571757 CGCACGGACTAGAGGCAA 59.428 61.111 0.00 0.00 0.00 4.52
6029 6388 4.129737 GCGCACGGACTAGAGGCA 62.130 66.667 0.30 0.00 0.00 4.75
6030 6389 4.129737 TGCGCACGGACTAGAGGC 62.130 66.667 5.66 0.00 0.00 4.70
6031 6390 2.202623 GTGCGCACGGACTAGAGG 60.203 66.667 26.77 0.00 33.56 3.69
6032 6391 2.202623 GGTGCGCACGGACTAGAG 60.203 66.667 32.35 0.00 36.67 2.43
6034 6393 4.111016 TCGGTGCGCACGGACTAG 62.111 66.667 37.41 22.25 36.03 2.57
6040 6399 3.558282 GAACAAGTCGGTGCGCACG 62.558 63.158 32.35 26.14 0.00 5.34
6041 6400 2.248431 GAACAAGTCGGTGCGCAC 59.752 61.111 32.15 32.15 0.00 5.34
6043 6402 4.072088 CGGAACAAGTCGGTGCGC 62.072 66.667 0.00 0.00 0.00 6.09
6047 6406 0.462789 AGTTCACGGAACAAGTCGGT 59.537 50.000 15.94 0.00 44.11 4.69
6048 6407 1.137513 GAGTTCACGGAACAAGTCGG 58.862 55.000 15.94 0.00 44.11 4.79
6050 6409 1.527311 GCAGAGTTCACGGAACAAGTC 59.473 52.381 15.94 7.56 44.11 3.01
6051 6410 1.583054 GCAGAGTTCACGGAACAAGT 58.417 50.000 15.94 0.00 44.11 3.16
6052 6411 0.868406 GGCAGAGTTCACGGAACAAG 59.132 55.000 15.94 8.32 44.11 3.16
6053 6412 0.878523 CGGCAGAGTTCACGGAACAA 60.879 55.000 15.94 0.00 44.11 2.83
6055 6414 1.282930 GACGGCAGAGTTCACGGAAC 61.283 60.000 8.26 8.26 42.25 3.62
6056 6415 1.006571 GACGGCAGAGTTCACGGAA 60.007 57.895 0.00 0.00 0.00 4.30
6057 6416 1.461091 AAGACGGCAGAGTTCACGGA 61.461 55.000 0.00 0.00 0.00 4.69
6058 6417 1.006102 AAGACGGCAGAGTTCACGG 60.006 57.895 0.00 0.00 0.00 4.94
6060 6419 0.318784 ACGAAGACGGCAGAGTTCAC 60.319 55.000 0.00 0.00 44.46 3.18
6061 6420 0.387929 AACGAAGACGGCAGAGTTCA 59.612 50.000 0.00 0.00 44.46 3.18
6062 6421 2.251893 CTAACGAAGACGGCAGAGTTC 58.748 52.381 0.00 0.00 44.46 3.01
6063 6422 1.067776 CCTAACGAAGACGGCAGAGTT 60.068 52.381 0.00 0.00 44.46 3.01
6064 6423 0.526662 CCTAACGAAGACGGCAGAGT 59.473 55.000 0.00 0.00 44.46 3.24
6065 6424 0.526662 ACCTAACGAAGACGGCAGAG 59.473 55.000 0.00 0.00 44.46 3.35
6066 6425 0.524862 GACCTAACGAAGACGGCAGA 59.475 55.000 0.00 0.00 44.46 4.26
6067 6426 0.242825 TGACCTAACGAAGACGGCAG 59.757 55.000 0.00 0.00 44.46 4.85
6068 6427 0.675083 TTGACCTAACGAAGACGGCA 59.325 50.000 0.00 0.00 44.46 5.69
6069 6428 1.066136 GTTGACCTAACGAAGACGGC 58.934 55.000 0.00 0.00 44.46 5.68
6071 6430 2.719426 AGGTTGACCTAACGAAGACG 57.281 50.000 0.00 0.00 46.48 4.18
6084 6443 0.536460 GGGCCGAGTCAAAAGGTTGA 60.536 55.000 0.00 0.00 41.57 3.18
6086 6445 0.185175 AAGGGCCGAGTCAAAAGGTT 59.815 50.000 0.00 0.00 0.00 3.50
6087 6446 1.061546 TAAGGGCCGAGTCAAAAGGT 58.938 50.000 0.00 0.00 0.00 3.50
6088 6447 1.271163 TGTAAGGGCCGAGTCAAAAGG 60.271 52.381 0.00 0.00 0.00 3.11
6089 6448 2.076863 CTGTAAGGGCCGAGTCAAAAG 58.923 52.381 0.00 0.00 0.00 2.27
6090 6449 2.178912 CTGTAAGGGCCGAGTCAAAA 57.821 50.000 0.00 0.00 0.00 2.44
6091 6450 3.927555 CTGTAAGGGCCGAGTCAAA 57.072 52.632 0.00 0.00 0.00 2.69
6103 6462 1.375523 GCGTGGTCCCACCTGTAAG 60.376 63.158 10.77 0.00 43.49 2.34
6119 6478 3.989698 ATTGGTCGTCTCTGCCGCG 62.990 63.158 0.00 0.00 0.00 6.46
6120 6479 1.298859 AAATTGGTCGTCTCTGCCGC 61.299 55.000 0.00 0.00 0.00 6.53
6121 6480 1.156736 AAAATTGGTCGTCTCTGCCG 58.843 50.000 0.00 0.00 0.00 5.69
6123 6482 5.351465 TCTGAATAAAATTGGTCGTCTCTGC 59.649 40.000 0.00 0.00 0.00 4.26
6124 6483 6.591834 AGTCTGAATAAAATTGGTCGTCTCTG 59.408 38.462 0.00 0.00 0.00 3.35
6126 6485 6.369065 ACAGTCTGAATAAAATTGGTCGTCTC 59.631 38.462 6.91 0.00 0.00 3.36
6127 6486 6.231211 ACAGTCTGAATAAAATTGGTCGTCT 58.769 36.000 6.91 0.00 0.00 4.18
6129 6488 6.668323 CAACAGTCTGAATAAAATTGGTCGT 58.332 36.000 6.91 0.00 0.00 4.34
6130 6489 5.569059 GCAACAGTCTGAATAAAATTGGTCG 59.431 40.000 6.91 0.00 0.00 4.79
6133 6492 5.343058 CGTGCAACAGTCTGAATAAAATTGG 59.657 40.000 6.91 0.00 35.74 3.16
6134 6493 5.164158 GCGTGCAACAGTCTGAATAAAATTG 60.164 40.000 6.91 0.00 35.74 2.32
6137 6496 3.605922 CGCGTGCAACAGTCTGAATAAAA 60.606 43.478 6.91 0.00 35.74 1.52
6138 6497 2.096466 CGCGTGCAACAGTCTGAATAAA 60.096 45.455 6.91 0.00 35.74 1.40
6140 6499 1.067693 CGCGTGCAACAGTCTGAATA 58.932 50.000 6.91 0.00 35.74 1.75
6141 6500 0.880278 ACGCGTGCAACAGTCTGAAT 60.880 50.000 12.93 0.00 35.74 2.57
6142 6501 1.520564 ACGCGTGCAACAGTCTGAA 60.521 52.632 12.93 0.00 35.74 3.02
6143 6502 2.106131 ACGCGTGCAACAGTCTGA 59.894 55.556 12.93 0.00 35.74 3.27
6149 6508 4.249020 CAAGCCACGCGTGCAACA 62.249 61.111 33.17 0.00 35.74 3.33
6150 6509 4.250431 ACAAGCCACGCGTGCAAC 62.250 61.111 33.17 23.01 41.40 4.17
6151 6510 4.249020 CACAAGCCACGCGTGCAA 62.249 61.111 33.17 0.00 41.40 4.08
6158 6517 4.263572 TGGGTCCCACAAGCCACG 62.264 66.667 6.47 0.00 41.74 4.94
6159 6518 2.282462 CTGGGTCCCACAAGCCAC 60.282 66.667 6.47 0.00 41.74 5.01
6160 6519 4.284550 GCTGGGTCCCACAAGCCA 62.285 66.667 6.47 0.00 44.29 4.75
6161 6520 4.284550 TGCTGGGTCCCACAAGCC 62.285 66.667 16.07 1.82 37.32 4.35
6162 6521 2.674380 CTGCTGGGTCCCACAAGC 60.674 66.667 6.47 10.28 0.00 4.01
6163 6522 1.002868 CTCTGCTGGGTCCCACAAG 60.003 63.158 6.47 7.65 0.00 3.16
6164 6523 1.461268 TCTCTGCTGGGTCCCACAA 60.461 57.895 6.47 0.00 0.00 3.33
6167 6526 3.005539 GCTCTCTGCTGGGTCCCA 61.006 66.667 11.11 11.11 38.95 4.37
6168 6527 3.791586 GGCTCTCTGCTGGGTCCC 61.792 72.222 0.00 0.00 42.39 4.46
6169 6528 4.154347 CGGCTCTCTGCTGGGTCC 62.154 72.222 0.00 0.00 44.06 4.46
6175 6534 2.264166 GCTCAACGGCTCTCTGCT 59.736 61.111 0.00 0.00 42.39 4.24
6176 6535 2.047844 TGCTCAACGGCTCTCTGC 60.048 61.111 0.00 0.00 41.94 4.26
6177 6536 0.458197 CTCTGCTCAACGGCTCTCTG 60.458 60.000 0.00 0.00 0.00 3.35
6179 6538 0.179140 CTCTCTGCTCAACGGCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
6181 6540 1.809209 GCTCTCTGCTCAACGGCTC 60.809 63.158 0.00 0.00 38.95 4.70
6182 6541 2.264166 GCTCTCTGCTCAACGGCT 59.736 61.111 0.00 0.00 38.95 5.52
6183 6542 2.817396 GGCTCTCTGCTCAACGGC 60.817 66.667 0.00 0.00 42.39 5.68
6184 6543 2.507992 CGGCTCTCTGCTCAACGG 60.508 66.667 0.00 0.00 42.39 4.44
6185 6544 1.373497 AACGGCTCTCTGCTCAACG 60.373 57.895 0.00 0.00 42.39 4.10
6189 6548 2.817396 GCCAACGGCTCTCTGCTC 60.817 66.667 0.00 0.00 46.69 4.26
6200 6559 0.531974 ATATAGCACACCCGCCAACG 60.532 55.000 0.00 0.00 39.67 4.10
6201 6560 2.536761 TATATAGCACACCCGCCAAC 57.463 50.000 0.00 0.00 0.00 3.77
6202 6561 3.120321 CTTATATAGCACACCCGCCAA 57.880 47.619 0.00 0.00 0.00 4.52
6203 6562 2.831685 CTTATATAGCACACCCGCCA 57.168 50.000 0.00 0.00 0.00 5.69
6213 6572 1.630148 CTGTCGCCCGCTTATATAGC 58.370 55.000 0.00 0.00 46.83 2.97
6214 6573 1.630148 GCTGTCGCCCGCTTATATAG 58.370 55.000 0.00 0.00 0.00 1.31
6216 6575 1.372997 CGCTGTCGCCCGCTTATAT 60.373 57.895 0.00 0.00 0.00 0.86
6217 6576 2.027024 CGCTGTCGCCCGCTTATA 59.973 61.111 0.00 0.00 0.00 0.98
6218 6577 4.891727 CCGCTGTCGCCCGCTTAT 62.892 66.667 0.00 0.00 0.00 1.73
6235 6594 4.634133 TGTCGTCGTGGTCACCGC 62.634 66.667 0.00 0.00 0.00 5.68
6236 6595 2.428569 CTGTCGTCGTGGTCACCG 60.429 66.667 0.00 0.00 0.00 4.94
6237 6596 1.081376 CTCTGTCGTCGTGGTCACC 60.081 63.158 0.00 0.00 0.00 4.02
6238 6597 0.110147 CTCTCTGTCGTCGTGGTCAC 60.110 60.000 0.00 0.00 0.00 3.67
6240 6599 1.154188 GCTCTCTGTCGTCGTGGTC 60.154 63.158 0.00 0.00 0.00 4.02
6243 6602 1.794003 CGTGCTCTCTGTCGTCGTG 60.794 63.158 0.00 0.00 0.00 4.35
6244 6603 2.556792 CGTGCTCTCTGTCGTCGT 59.443 61.111 0.00 0.00 0.00 4.34
6245 6604 2.202362 CCGTGCTCTCTGTCGTCG 60.202 66.667 0.00 0.00 0.00 5.12
6246 6605 2.505118 GCCGTGCTCTCTGTCGTC 60.505 66.667 0.00 0.00 0.00 4.20
6247 6606 4.406173 CGCCGTGCTCTCTGTCGT 62.406 66.667 0.00 0.00 0.00 4.34
6249 6608 4.057428 ACCGCCGTGCTCTCTGTC 62.057 66.667 0.00 0.00 0.00 3.51
6250 6609 4.363990 CACCGCCGTGCTCTCTGT 62.364 66.667 0.00 0.00 32.04 3.41
6251 6610 4.056125 TCACCGCCGTGCTCTCTG 62.056 66.667 0.00 0.00 40.04 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.